Works (37)

Updated: July 5th, 2023 16:04

2004 journal article

Metabolic profiling: A new tool in the study of wood formation

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 52(6), 1427–1434.

By: C. Morris n, J. Scott n, H. Chang n, R. Sederoff n, . D O'Malley & J. Kadla n

author keywords: metabolic profiling; principal component analysis (PCA); loblolly pine; xylem tissue; lipid metabolites; polar metabolites
MeSH headings : Cellulose / analysis; Gas Chromatography-Mass Spectrometry; Genotype; Lipid Metabolism; Phenotype; Pinus taeda / chemistry; Pinus taeda / genetics; Pinus taeda / metabolism; Plant Extracts / chemistry; Wood
TL;DR: The first application of metabolic profiling on differentiating xylem tissue of loblolly pine is reported, demonstrating the use of metabolic profiles for the study of wood-forming tissue and as a tool in functional genomics. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Phenotypic plasticity of fine roots increases plant productivity in pine seedlings

BMC Ecology, 4, 14.

By: R. Wu, J. Grissom, S. McKeand & D. O'Malley

Source: NC State University Libraries
Added: August 6, 2018

2003 journal article

Analysis of lignin produced by cinnamyl alcohol dehydrogenase-deficient Pinus taeda cultured cells

PLANT PHYSIOLOGY AND BIOCHEMISTRY, 41(5), 439–445.

By: C. Stasolla*, J. Scott, U. Egertsdotter, J. Kadla*, . D O'Malley, R. Sederoff*, L. Zyl

author keywords: cinnamyl alcohol dehydrogenase; cultured cells; dihydroconiferyl alcohol; lignin; Pinus taeda; xylem
TL;DR: The striking similarities in lignin composition observed both in vivo and in vitro, open new possibilities for the use of culture systems aimed at revealing the mechanisms controlling lign in biosynthesis, and the formation of DHCA subunits. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2003 journal article

Comparing EST-based genetic maps between Pinus sylvestris and Pinus taeda

THEORETICAL AND APPLIED GENETICS, 107(4), 667–678.

By: P. Komulainen*, G. Brown*, M. Mikkonen*, A. Karhu*, M. Garcia-Gil*, . D O'Malley, B. Lee n, D. Neale*, O. Savolainen*

author keywords: Pinus sylvestris; Pinus taeda; ESTP; AFLP; genetic mapping
MeSH headings : Base Sequence; Chromosome Mapping; DNA Primers / genetics; DNA, Plant / genetics; Expressed Sequence Tags; Genetic Markers; Microsatellite Repeats; Pinus sylvestris / genetics; Pinus taeda / genetics; Polymerase Chain Reaction; Polymorphism, Genetic; Polymorphism, Single-Stranded Conformational; Species Specificity
TL;DR: A genetic map of Pinus sylvestris was constructed using ESTP (expressed sequence tag polymorphism) markers and other gene-based markers, AFLP markers and microsatellites, which provides a first ESTP-containing map of P. syLvestris, which can also be used for comparing this species to additional species mapped with the same markers. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2002 journal article

Pulping and bleaching of partially CAD-deficient wood

JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY, 22(4), 235–248.

By: D. Dimmel, J. MacKay, C. Courchene, J. Kadla*, J. Scott, . DM O'Malley, S. McKeand*

author keywords: pulping; bleaching; kraft; lignin; cinnamyl alcohol dehydrogenase; CAD-deficient; loblolly pine; mutant
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2001 conference paper

Cinnamyl alcohol dehydrogenase (cad) and genomic approaches to manipulating wood properties in loblolly pine

7th Brazilian Symposium on the Chemistry of Lignins and Other Wood Components, 19–24.

By: D. O'Malley, J. Scott, D. Harkins, J. Kadia, S. McKeand & H. Chang

Source: NC State University Libraries
Added: August 6, 2018

2001 article

Elucidation of new structures in lignins of CAD- and COMT-deficient plants by NMR

Ralph, J., Lapierre, C., Marita, J. M., Kim, H., Lu, F. C., Hatfield, R. D., … Boerjan, W. (2001, July). PHYTOCHEMISTRY, Vol. 57, pp. 993–1003.

By: J. Ralph*, C. Lapierre*, J. Marita*, H. Kim*, F. Lu*, R. Hatfield*, S. Ralph*, C. Chapple* ...

author keywords: NMR; transgenic; mutant; O-methyltransferase; monolignol; coniferyl aldehyde; sinapyl aldehyde; 5-hydroxyconiferyl alcohol
MeSH headings : Alcohol Oxidoreductases / deficiency; Alcohol Oxidoreductases / metabolism; Cycadopsida / enzymology; Cycadopsida / metabolism; Lignin / biosynthesis; Lignin / chemistry; Methyltransferases / deficiency; Methyltransferases / metabolism; Models, Chemical; Molecular Structure; Nuclear Magnetic Resonance, Biomolecular / methods; Plants, Toxic; Tobacco / enzymology; Tobacco / metabolism
TL;DR: The recognition that novel units can incorporate into lignins portends significantly expanded opportunities for engineering the composition and consequent properties of lignin for improved utilization of valuable plant resources. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2001 journal article

High-throughput AFLP analysis using infrared dye-labeled primers and an automated DNA sequencer

BIOTECHNIQUES, 30(2), 348-+.

MeSH headings : Electrophoresis; Genetic Markers; Genotype; Infrared Rays; Polymerase Chain Reaction; Polymorphism, Genetic; Sequence Analysis, DNA
TL;DR: A protocol for high-throughput AFLP analysis that allows up to 70,000 polymorphic marker genotype determinations per week on a single automated DNA sequencer is developed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2001 journal article

Polymix breeding with parental analysis of progeny: an alternative to full-sib breeding and testing

THEORETICAL AND APPLIED GENETICS, 103(6-7), 930–943.

By: C. Lambeth*, B. Lee n, . D O'Malley & N. Wheeler*

author keywords: polymix crossing; mating design; genetic fingerprinting; genetic markers; genetic gain
TL;DR: PMX breeding with parental analysis is called, which is easy to implement, ensures good estimates of breeding values of the parent being pollinated, and provides for increased genetic gain opportunity because of the significantly increased number of effective parental combinations tested. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2001 journal article

Susceptibility of parent and interspecific F1 hybrid pine trees to tip moth damage in a coastal North Carolina planting

CANADIAN JOURNAL OF FOREST RESEARCH-REVUE CANADIENNE DE RECHERCHE FORESTIERE, 31(5), 919–923.

By: M. Highsmith, J. Frampton*, . D O'Malley, J. Richmond* & M. Webb

UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
14. Life Below Water (OpenAlex)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2001 journal article

Whole-tree biomass and carbon allocation of juvenile trees of loblolly pine (Pinus taeda): influence of genetics and fertilization

CANADIAN JOURNAL OF FOREST RESEARCH, 31(6), 960–970.

By: W. Retzlaff, J. Handest, . DM O'Malley, S. McKeand* & M. Topa

TL;DR: Although constrained by a sample size of three harvested trees per family, this study suggests that biomass allocation on a whole-tree level was similar between fast- and slow-growing families of different provenances of juvenile loblolly pine and was not affected by fertilizer treatment. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2000 journal article

Evaluation of major genetic loci contributing to inbreeding depression for survival and early growth in a selfed family of Pinus taeda

Evolution, 54(5), 1580–1589.

By: D. Remington & D. O'Malley

Source: NC State University Libraries
Added: August 6, 2018

2000 journal article

Genetic discontinuity revealed by chloroplast microsatellites in eastern North American Abies (Pinaceae)

AMERICAN JOURNAL OF BOTANY, 87(6), 774–782.

author keywords: Abies; chloroplast DNA; chloroplast haplotypes; chloroplast microsatellites; chloroplast SSRs; conservation; Fraser fir; Pinaceae
TL;DR: The genetic differentiation of chloroplast DNA markers provides justification for the recognition of Fraser fir as a distinct Management Unit (MU) for conservation purposes, regardless of its taxonomic classification. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2000 patent

Methods for within family selection in woody perennials using genetic markers

Washington, DC: U.S. Patent and Trademark Office.

By: D. O'Malley, R. Sederoff & D. Grattapaglia

Source: NC State University Libraries
Added: August 6, 2018

2000 journal article

Responsiveness of diverse provenances of loblolly pine to fertilization - age 4 results

Journal of Sustainable Forestry, 10, 87–94.

By: S. McKeand n, J. Grissom n, J. Handest n, D. O'Malley n & H. Allen n

UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

2000 journal article

Root architectural plasticity to nutrient stress in two contrasting ecotypes of loblolly pine

Journal of Sustainable Forestry, 10(3), 307.

By: R. Wu*, J. Grissom, D. O'Malley & S. McKeand

UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

2000 journal article

The case for molecular mapping in forest tree breeding

Plant Breeding Reviews, 19(2000), 41–68.

By: W. Rongling, Z. Zeng, . McKeand & D. O'Malley

Source: NC State University Libraries
Added: August 6, 2018

2000 journal article

Whole-genome characterization of embryonic stage inbreeding depression in a selfed loblolly pine family

Genetics, 155(1), 337–348.

By: D. Remington & D. O'Malley

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

Average effect of a mutation in lignin biosynthesis in loblolly pine

THEORETICAL AND APPLIED GENETICS, 99(3-4), 705–710.

author keywords: average effect; CAD; lignin biosynthesis; loblolly pine; mutant; RAPDs
TL;DR: It is found that the substitution of a wild-type allele by cad-n1 was associated with a significant effect on 2nd-year shoot elongation in a half-sib family of loblolly pine (designated family 7–1037), and the average effect appeared to increase with tree growth and was greater for stem radial growth than height growth. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

1999 journal article

Construction of an AFLP genetic map with nearly complete genome coverage in Pinus taeda

THEORETICAL AND APPLIED GENETICS, 98(8), 1279–1292.

author keywords: Pinus taeda; linkage map; AFLP; locus ordering; genome length estimation
MeSH headings : Chromosome Mapping; Genes, Plant; Genetic Linkage; Genome, Plant; Lod Score; Models, Genetic; Pinus / genetics; Pinus taeda; Polymorphism, Genetic; Software
TL;DR: This map should provide a useful framework for merging existing loblolly pine maps and adding multiallelic markers as they become available, and coverage with dominant markers in both linkage phases will make the map useful for subsequent quantitative trait locus mapping in families derived by self-pollination. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

1999 journal article

Genetic dissection of vegetative propagation traits in Eucalyptus tereticornis and E-globulus

THEORETICAL AND APPLIED GENETICS, 99(6), 936–946.

By: C. Marques, J. Vasquez-Kool*, V. Carocha*, J. Ferreira*, . DM O'Malley, B. Liu*, R. Sederoff*

author keywords: AFLP; pseudo-testcross; Eucalyptus; QTL; vegetative propagation
TL;DR: Results indicate that phenotypic variation in these traits has a meaningful genetic component and that stable QTLs can be found in a family of reasonable size where no previous knowledge of the trait was available. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

1999 patent

Methods for within family selection of disease resistance in woody perennials using genetic markers

Washington, DC: U.S. Patent and Trademark Office.

By: H. Amerson, P. Wilcox, R. Sederoff, E. Kuhlman, D. O'Malley & D. Grattapaglia

Source: NC State University Libraries
Added: August 6, 2018

1999 journal article

Modified lignin and delignification with a CAD-deficient loblolly pine

HOLZFORSCHUNG, 53(4), 403–410.

By: J. MacKay*, T. Presnell, H. Jameel*, H. Taneda, . D O'Malley & R. Sederoff*

author keywords: pine; genetic modification; lignin mutant; delignification; soda pulping; coniferaldehyde
TL;DR: More extensive lignin removal, both in mild alkali treatment and in soda pulping, indicate that suppression of CAD in softwood trees may hold promise to produce woods well suited for “milder” pulping conditions that consume less chemicals and generate less waste. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

1999 journal article

Understanding the genetic architecture of a quantitative trait in gymnosperms by genotyping haploid megagametophytes

THEORETICAL AND APPLIED GENETICS, 99(6), 1031–1038.

By: R. Wu*, . DM O'Malley & S. McKeand*

author keywords: average effect; candidate gene; genetic architecture; gymnosperm; megagametophyte
TL;DR: A quantitative genetic approach is proposed to study the genetic architecture of a quantitative trait in gymnosperms by taking advantage of the megagametophyte and the concept of average effect of a gene. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

1998 journal article

AFLP genetic maps of Eucalyptus globulus and E-tereticornis

THEORETICAL AND APPLIED GENETICS, 96(6-7), 727–737.

By: C. Marques, J. Araujo*, J. Ferreira*, R. Whetten*, . DM O'Malley, B. Liu*, R. Sederoff*

author keywords: genetic map; linkage; Eucalyptus; AFLP marker
TL;DR: Amplified fragment length polymorphism analysis is a rapid and efficient technique for detecting large numbers of DNA markers in eucalypts and the linkage data developed in these maps will be used to detect loci controlling commercially important traits. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

1998 patent

Method of altering lignin in trees

Washington, DC: U.S. Patent and Trademark Office.

By: J. MacKay, D. O'Malley, R. Whetten & R. Sederoff

Source: NC State University Libraries
Added: August 6, 2018

1998 journal article

Nonlinear genotypic response to macro- and microenvironments

THEORETICAL AND APPLIED GENETICS, 96(5), 669–675.

author keywords: additive-multiplicative model; ANOVA; macroenvironment; microenvironment; genotype x environment interaction
TL;DR: The model extends Gimelfarb’s additive-multiplicative model for genotype×environment interaction by considering both macro- and microenvironmental variation and the mechanistic basis of genotypic response to a particular macroenvironmental factor. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

1997 journal article

Abnormal lignin in a loblolly pine mutant

SCIENCE, 277(5323), 235–239.

By: J. Ralph n, J. MacKay n, R. Hatfield n, D. OMalley n, R. Whetten n & R. Sederoff n

MeSH headings : Alcohol Oxidoreductases / deficiency; Alcohol Oxidoreductases / genetics; Alcohol Oxidoreductases / metabolism; Aldehydes / analysis; Lignin / biosynthesis; Lignin / chemistry; Magnetic Resonance Spectroscopy; Mutation; Oxidation-Reduction; Phenols / analysis; Phenols / metabolism; Pinus taeda; Plant Proteins / genetics; Plant Proteins / metabolism
TL;DR: Novel lignin is formed in a mutant loblolly pine severely depleted in cinnamyl alcohol dehydrogenase, which converts coniferaldehyde to coniferyl alcohol, the primary lignIn precursor in pines. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

1997 conference paper

Early growth response of diverse families of loblolly pine to nutrient amendments on a poor site

Proceedings of the 24th Southern Forest Tree Improvement Conference, 267–274.

By: S. McKeand, J. Grissom, D. O'Malley & H. Allen

Source: NC State University Libraries
Added: August 6, 2018

1997 article

Inheritance, gene expression, and lignin characterization in a mutant pine deficient in cinnamyl alcohol dehydrogenase

MacKay, J. J., OMalley, D. M., Presnell, T., Booker, F. L., Campbell, M. M., Whetten, R. W., & Sederoff, R. R. (1997, July 22). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 94, pp. 8255–8260.

MeSH headings : Alcohol Oxidoreductases / genetics; Alcohol Oxidoreductases / metabolism; Chromosome Mapping; Gene Expression Regulation, Enzymologic / genetics; Gene Expression Regulation, Plant / genetics; Homozygote; Lignin / metabolism; Mutation; Phenotype; Substrate Specificity; Trees / enzymology; Trees / genetics; Trees / metabolism
TL;DR: Lignin composition in this mutant loblolly pine shows dramatic modifications, including increased incorporation of the substrate of CAD (coniferaldehyde), indicating that CAD may modulate lign in composition in pine. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

1997 chapter

Molecular markers and forest trees

In P. M. G. G. Caetano-Anolles (Ed.), DNA markers: Protocols, applications, and overviews (pp. 237–257). New York: Wiley-VCH.

By: D. O'Malley & R. Whetten

Ed(s): P. G. Caetano-Anolles

Source: NC State University Libraries
Added: August 6, 2018

1996 conference paper

Molecular markers, forest genetics, and tree breeding

In J. P. Gustafson & R. B. Flavell (Eds.), Genomes of Plants and Animals: 21 Stadler Genetics Symposium (pp. 87–102).

By: D. O'Malley n, D. Grattapaglia*, J. Chaparro n, P. Wilcox n, H. Amerson n, B. Liu n, R. Whetten n, S. McKeand n ...

Ed(s): J. Gustafson & R. Flavell

TL;DR: It is argued that important traits in forest trees such as wood volume, are likely to be controlled by large numbers of genes with small effects, and therefore, are unlikely to have useful marker trait associations. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

1995 conference paper

Detection of QTLs for economically important traits in loblolly pine

Proceedings of the 23rd Southern Forest Tree Improvement Conference, 119.

By: B. Crane, D. O'Malley, S. McKeand & R. Sederoff

Source: NC State University Libraries
Added: August 6, 2018

1994 journal article

Marker assisted selection for breeding value in forest trees

Forest Genetics, 1, 231–242.

By: D. O'Malley & S. McKeand

Source: NC State University Libraries
Added: August 6, 2018

1993 conference paper

Application of genetic markers to tree breeding

Proceedings of the 22nd Southern Forest Tree Improvement Conference, 452–463.

By: D. Grattapaglia, J. Chaparro, P. Wilcox, S. McCord, B. Crane, H. Amerson, D. Werner, B. Liu ...

Source: NC State University Libraries
Added: August 6, 2018

1992 conference paper

Mapping in woody plants with RAPD markers: application to breeding in forestry and horticulture

Proceedings of the Symposium on the Applications of RAPD Technology to Plant Breeding, 37–40. Joint Plant Breeding Symposium Series, Crop Science Society of America, American Society for Horticultural Science, and American Genetics Association.

By: D. Grattapaglia, J. Chaparro, P. Wilcox, S. McCord, D. Werner, H. Amerson, S. McKeand, F. Bridgwater ...

Source: NC State University Libraries
Added: August 6, 2018

1992 journal article

PURIFICATION, CHARACTERIZATION, AND CLONING OF CINNAMYL ALCOHOL-DEHYDROGENASE IN LOBLOLLY-PINE (PINUS-TAEDA L)

PLANT PHYSIOLOGY, 98(4), 1364–1371.

By: D. Omalley n, S. Porter & R. Sederoff

TL;DR: Kinetic data strongly suggest that coniferin is a noncompetitive inhibitor of CAD enzyme activity and demonstrated that the enzyme is the same in both tissues. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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