W. Patrick Cumbie

Works (5)

Updated: July 5th, 2023 15:48

2011 journal article

Association genetics of carbon isotope discrimination, height and foliar nitrogen in a natural population of Pinus taeda L

Heredity, 107(2), 105–114.

By: W. Cumbie n, A. Eckert *, J. Wegrzyn *, R. Whetten n , D. Neale * & B. Goldfarb n

author keywords: water use efficiency; forest tree; population genetics; loblolly pine
MeSH headings : Carbon Isotopes / metabolism; Gene Frequency / genetics; Genes, Plant / genetics; Genetic Association Studies; Molecular Sequence Annotation; Nitrogen / metabolism; Phenotype; Pinus taeda / genetics; Pinus taeda / metabolism; Polymorphism, Single Nucleotide / genetics
topics (OpenAlex): Genetic Mapping and Diversity in Plants and Animals; Plant Stress Responses and Tolerance; Plant Gene Expression Analysis
TL;DR: An association genetics approach was taken, using an unimproved population of 380 clonally replicated unrelated trees, to test 3938 single nucleotide polymorphisms in as many genes for association with phenotypic variation in carbon isotope discrimination, foliar nitrogen concentration and total tree height after two growing seasons. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Sources: Web Of Science, Crossref, NC State University Libraries
Added: August 6, 2018

2011 article

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

Eckert, A. J., Wegrzyn, J. L., Cumbie, W. P., Goldfarb, B., Huber, D. A., Tolstikov, V., … Neale, D. B. (2011, November 30). New Phytologist.

By: A. Eckert *, J. Wegrzyn *, W. Cumbie n, B. Goldfarb n, D. Huber*, V. Tolstikov *, O. Fiehn *, D. Neale *

author keywords: association genetics; forest trees; loblolly pine (Pinus taeda); metabolome; natural selection; single nucleotide polymorphisms (SNPs)
MeSH headings : Bayes Theorem; Gene Frequency; Genetic Association Studies; Genetics, Population; Metabolome; Models, Genetic; Pinus taeda / genetics; Pinus taeda / metabolism; Polymorphism, Single Nucleotide; Southeastern United States
topics (OpenAlex): Plant biochemistry and biosynthesis; Genetic diversity and population structure; Plant Gene Expression Analysis
TL;DR: Standard association genetic methods are used to correlate 3563 single nucleotide polymorphisms (SNPs) to concentrations of 292 metabolites measured in a single loblolly pine (Pinus taeda) association population, highlighting the importance of multi-SNP models to association mapping and the implications for association mapping in forest trees. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2011 journal article

Effects of propagule type on genetic parameters of wood density and growth in a loblolly pine progeny test at ages 10 and 11 years

Tree Genetics & Genomes, 7(6), 1147–1158.

By: W. Cumbie n, F. Isik n , B. Li n & B. Goldfarb n

author keywords: Pinus taeda; Wood density; Heritability; Clones; Vegetative propagation
topics (OpenAlex): Forest ecology and management; Wood Treatment and Properties; Tree Root and Stability Studies
TL;DR: Nine full-sib families of loblolly pine produced by a 3 × 3 factorial mating design showed that individual-tree and family heritability estimates from rooted cuttings were similar to or higher than those from seedlings for all traits, which suggests that wood density and height breeding value estimates can be estimated by traditional seedling tests, but not for tree diameter. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018

2010 article

Association Mapping of Quantitative Disease Resistance in a Natural Population of Loblolly Pine (Pinus taeda L.)

Quesada, T., Gopal, V., Cumbie, W. P., Eckert, A. J., Wegrzyn, J. L., Neale, D. B., … Davis, J. M. (2010, July 14). Genetics.

By: T. Quesada, V. Gopal, W. Cumbie n, A. Eckert, J. Wegrzyn *, D. Neale *, B. Goldfarb n, D. Huber, G. Casella *, J. Davis *

MeSH headings : Chromosome Mapping; Fusarium / pathogenicity; Fusarium / physiology; Genes, Plant; Genetic Association Studies; Genetic Linkage; Genetic Variation; Genotype; Host-Pathogen Interactions; Immunity, Innate / genetics; Inheritance Patterns; Phenotype; Pinus taeda / genetics; Pinus taeda / immunology; Pinus taeda / microbiology; Plant Diseases / genetics; Plant Diseases / immunology; Plant Diseases / microbiology; Polymorphism, Single Nucleotide
topics (OpenAlex): Plant Pathogens and Fungal Diseases; Yeasts and Rust Fungi Studies; Horticultural and Viticultural Research
TL;DR: A population genomic approach was used to identify genes in loblolly pine that are associated with resistance to pitch canker, a disease incited by the necrotrophic pathogen Fusarium circinatum, and discovered associated genes with unknown function. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2010 article

Natural variation in expression of genes involved in xylem development in loblolly pine (Pinus taeda L.)

Palle, S. R., Seeve, C. M., Eckert, A. J., Cumbie, W. P., Goldfarb, B., & Loopstra, C. A. (2010, August 30). Tree Genetics & Genomes.

By: S. Palle*, C. Seeve *, A. Eckert *, W. Cumbie n, B. Goldfarb n & C. Loopstra *

author keywords: Gene expression; Natural variation; Pinus taeda L; Xylem
topics (OpenAlex): Plant Gene Expression Analysis; Bioenergy crop production and management; Forest ecology and management
TL;DR: Genes encoding lignin biosynthetic enzymes and arabinogalactan proteins were more variable than those encoding cellulose synthases or those involved in signal transduction, and transcription factors that may be key regulators of xylem development in pine were identified. (via Semantic Scholar)
UN Sustainable Development Goals Color Wheel
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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