Works (3)

Updated: July 5th, 2023 15:58

2008 journal article

Rates of nucleotide substitution in Cornaceae (Cornales)—Pattern of variation and underlying causal factors

Molecular Phylogenetics and Evolution, 49(1), 327–342.

By: Q. Xiang n, J. Thorne n, T. Seo n, W. Zhang n, D. Thomas n & R. Ricklefs*

author keywords: Comus; Cornaceae; Divergence time; Rate of molecular evolution; Rate of morphological evolution; Speciation
MeSH headings : Bayes Theorem; Chloroplasts / genetics; Cornus / anatomy & histology; Cornus / classification; Cornus / genetics; DNA, Chloroplast / genetics; DNA, Plant / genetics; Evolution, Molecular; Fossils; Genes, Plant; Genetic Speciation; Genome, Chloroplast; Models, Genetic; Nucleotides / genetics; Phylogeny; Sequence Analysis, DNA
TL;DR: This study examined the rate and pattern of molecular evolution for five DNA regions over a phylogeny of Cornus, the single genus of Cornaceae, and suggested a possible localized link between species richness and rate of nonsynonymous nucleotide substitution for the combined cpDNA regions. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2005 journal article

Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data


By: T. Seo n, H. Kishino n & J. Thorne n

MeSH headings : Biological Evolution; Databases, Genetic; Genetic Techniques; Genetic Variation; Likelihood Functions; Models, Genetic; Phylogeny
TL;DR: Two criteria for inferring the optimal tree topology from data sets with multiple genes and a two-stage bootstrap procedure that involves resampling genes and then resamplings alignment columns within resampled genes are discussed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences


By: T. Seo n, H. Kishino & J. Thorne*

author keywords: Bayesian method; Markov chain Monte Carlo (MCMC); rate change model; lognormal; evolutionary rate; selection; synonymous rate; nonsynonymous rate
MeSH headings : Animals; Base Sequence / genetics; Bayes Theorem; Electron Transport Complex IV / genetics; Evolution, Molecular; Genetic Variation; Nucleotides / genetics; Polymorphism, Genetic; Primates / genetics; Rodentia / genetics; Selection, Genetic; Sequence Analysis, DNA / methods
TL;DR: This work analyzes cytochrome oxidase subunit I evolution in primates and infer that nonsynonymous rates have a greater tendency to change over time than do synonymous rates, and suggests that rates have been positively correlated. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

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