@article{barr_wiegmann_2009, title={Phylogenetic relationships of Ceratitis fruit flies inferred from nuclear CAD and tango/ARNT gene fragments: Testing monophyly of the subgenera Ceratitis (Ceratitis) and C. (Pterandrus)}, volume={53}, ISSN={["1095-9513"]}, DOI={10.1016/j.ympev.2009.07.008}, abstractNote={Systematic studies of Ceratitis (Tephritidae) fruit flies using molecular (i.e., COI, ND6, and period genes) and morphological (plus host-use characters) data have recently challenged the monophyly of the subgenera Ceratitis (Ceratitis) and Ceratitis (Pterandrus). In this paper, we report on the phylogenetic utility of three single-copy nuclear gene regions (two non-overlapping fragments of the carbamoylphosphate synthetase, CPS, locus of CAD, and a fragment of tango) within these taxa and investigate evolutionary relationships based on a concatenated ca. 3.4kb data set that includes the six protein encoding gene regions. Results indicate that the CAD and tango genes provide useful phylogenetic signal within the taxa and are compatible with the previously studied genes. The two subgenera, as currently classified, are not monophyletic. Our molecular phylogenetic analyses support a revised classification in which (1) the subgenus C. (Pterandrus) comprises two lineages called A and B, (2) the C. (Pterandrus) B species should be included in C. (Ceratitis), and (3) the newly defined subgenera C. (Pterandrus) (=Pterandrus section A) and C. (Ceratitis) [=C. (Ceratitis)+C. (Pterandrus) section B] are reciprocally monophyletic.}, number={2}, journal={MOLECULAR PHYLOGENETICS AND EVOLUTION}, author={Barr, Norman B. and Wiegmann, Brian M.}, year={2009}, month={Nov}, pages={412–424} }
 @article{barr_cui_mcpheron_2005, title={Molecular systematics of nuclear gene period in genus Anastrepha (Tephritidae)}, volume={98}, ISSN={["1938-2901"]}, DOI={10.1603/0013-8746(2005)098[0173:MSONGP]2.0.CO;2}, abstractNote={Abstract The nuclear gene period is used to reconstruct the phylogeny of Anastrepha, a genus of tephritid fruit flies. Specifically, a region of period termed C3C5 that is located in the dCLK:CYC inhibition domain (CCID) is analyzed. This is the first study using this C-terminal region of the period gene for phylogenetics. Variation in the gene is informative for this genus, and period trees are compared with phylogenies based on mitochondrial and morphological data sets. In general, branches that are supported in the other data sets are recovered in the period tree; moreover, trees built using the period gene support branching patterns previously unresolved with 16S rRNA gene data. Important relationships recovered in the period gene tree include a paraphyletic placement of Anastrepha with respect to Toxotrypana, support for the separation of Anastrepha species groups into two evolutionary sections (with the exception of the pseudoparallela species group), and evidence that several species groups are not monophyletic.}, number={2}, journal={ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA}, author={Barr, NB and Cui, LW and McPheron, BA}, year={2005}, month={Mar}, pages={173–180} }