Works (4)

Updated: July 5th, 2023 15:57

2008 journal article

Biochemical and functional evidence of p53 homology is inconsistent with molecular phylogenetics for distant sequences

JOURNAL OF MOLECULAR EVOLUTION, 67(1), 51–67.

By: A. Fernandes n & W. Atchley n

co-author countries: United States of America 🇺🇸
author keywords: p53; p63; p73; beta-Sandwich; transcription factor; p731
MeSH headings : Animals; Arthropods / genetics; DNA-Binding Proteins / classification; Evolution, Molecular; Genes, p53; Mollusca / genetics; Nematoda / genetics; Nuclear Proteins / classification; Phylogeny; Sequence Homology, Amino Acid; Tumor Protein p73; Tumor Suppressor Protein p53 / chemistry; Tumor Suppressor Protein p53 / classification; Tumor Suppressor Proteins / classification; Urochordata / genetics
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Site-specific evolutionary rates in proteins are better modeled as non-independent and strictly relative

BIOINFORMATICS, 24(19), 2177–2183.

By: A. Fernandes n & W. Atchley n

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
MeSH headings : Algorithms; Animals; Basic-Leucine Zipper Transcription Factors / chemistry; Basic-Leucine Zipper Transcription Factors / genetics; Computational Biology; Databases, Protein; Evolution, Molecular; Genes, myc; Humans; Proteins / chemistry; Proteins / genetics; Sequence Alignment; Tumor Suppressor Protein p53 / chemistry; Tumor Suppressor Protein p53 / genetics
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6401–6406.

By: W. Atchley n & A. Fernandes n

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: Myc; predictive motif; transcription factor; oncoprotein; molecular evolution
MeSH headings : Amino Acid Sequence / genetics; Basic-Leucine Zipper Transcription Factors; Computational Biology / methods; DNA-Binding Proteins / genetics; Fuzzy Logic; Genetic Variation; Genomics / methods; Helix-Loop-Helix Motifs / genetics; Molecular Sequence Data; Protein Conformation; Proto-Oncogene Proteins c-myc / genetics; Repressor Proteins / genetics; Sequence Alignment; Sequence Homology; Transcription Factors / genetics
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Solving the protein sequence metric problem

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6395–6400.

By: W. Atchley n, J. Zhao n, A. Fernandes n & T. Druke n

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: basic helix-loop-helix; molecular evolution; multivariate statistics; amino acid attributes; factor analysis
MeSH headings : Amino Acid Sequence / genetics; Analysis of Variance; Cluster Analysis; Codon / genetics; Computational Biology / methods; Discriminant Analysis; Genetic Variation; Models, Genetic; Multivariate Analysis; Phylogeny; Protein Conformation; Static Electricity; Statistics as Topic / methods
Source: Web Of Science
Added: August 6, 2018

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