Asger Hobolth

Works (3)

Updated: July 5th, 2023 15:56

2008 journal article

A Markov chain Monte Carlo expectation maximization algorithm for statistical analysis of DNA sequence evolution with neighbor-dependent substitution rates

JOURNAL OF COMPUTATIONAL AND GRAPHICAL STATISTICS, 17(1), 138–162.

By: A. Hobolth*

author keywords: EM-algorithm; Gibbs sampling; likelihood inference; molecular evolution; neighbor-dependence; path sampling
TL;DR: This work describes statistical inference of neighbor-dependent models using a Markov chain Monte Carlo expectation maximization (MCMC-EM) algorithm and estimates the high-dimensional integrals required in the EM algorithm are estimated using MCMC sampling. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2006 journal article

CpG plus CpNpG analysis of protein-coding sequences from tomato

MOLECULAR BIOLOGY AND EVOLUTION, 23(6), 1318–1323.

By: A. Hobolth n, R. Nielsen, Y. Wang*, F. Wu & S. Tanksley

author keywords: codon model; context dependency; CpG plus CpNpG methylation
MeSH headings : Base Composition; CpG Islands / genetics; DNA Methylation; Genes, Plant; Solanum lycopersicum / genetics; Models, Genetic; Mutation
TL;DR: The results suggest different roles of CpG and CpNpG methylation, with Cp npG possibly playing a specialized role in defense against transposons and RNA viruses. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2006 article

On error prediction in circular systematic sampling

Jonsdottir, K. Y., Hoffmann, L. M., Hobolth, A., & Jensen, E. B. V. (2006, June). JOURNAL OF MICROSCOPY, Vol. 222, pp. 212–216.

By: K. Jonsdottir*, L. Hoffmann*, A. Hobolth n & E. Jensen *

author keywords: covariogram; error prediction; shape; stereology; stochastic processes; systematic sampling; variance estimation
TL;DR: An extended covariogram model is discussed for estimating the precision of circular systematic sampling, motivated by recent developments in shape analysis of featureless planar objects. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

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