Works (7)

Updated: October 3rd, 2023 05:00

2023 journal article

FIOLA: an accelerated pipeline for fluorescence imaging online analysis

NATURE METHODS, 20(9), 1417-+.

By: C. Cai*, C. Dong*, J. Friedrich*, M. Rozsa*, E. Pnevmatikakis* & A. Giovannucci n

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: October 2, 2023

2022 article

A deep learning framework for inference of single-trial neural population dynamics from calcium imaging with subframe temporal resolution

Zhu, F., Grier, H. A., Tandon, R., Cai, C., Agarwal, A., Giovannucci, A., … Pandarinath, C. (2022, November 24). NATURE NEUROSCIENCE.

By: F. Zhu*, H. Grier*, R. Tandon*, C. Cai n, A. Agarwal, A. Giovannucci n, M. Kaufman*, C. Pandarinath*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Mice; Brain; Calcium; Deep Learning; Diagnostic Imaging; Population Dynamics
Source: Web Of Science
Added: December 12, 2022

2022 journal article

Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy

CELL, 185(18), 3408-+.

By: Z. Liu*, X. Lu*, V. Villette*, Y. Gou*, K. Colbert*, S. Lai*, S. Guan*, M. Land* ...

co-author countries: Germany 🇩🇪 France 🇫🇷 Greece 🇬🇷 United States of America 🇺🇸
MeSH headings : Animals; Interneurons; Mice; Microscopy / methods; Neurons / physiology; Photons; Wakefulness
Source: Web Of Science
Added: September 26, 2022

2022 review

Two-photon calcium imaging of neuronal activity

[Review of ]. NATURE REVIEWS METHODS PRIMERS, 2(1).

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: December 12, 2022

2021 journal article

Inhibitory gating of coincidence-dependent sensory binding in secondary auditory cortex

NATURE COMMUNICATIONS, 12(1).

By: A. Kline*, D. Aponte*, H. Tsukano*, A. Giovannucci n & H. Kato*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Auditory Cortex / physiology; Auditory Perception / physiology; Evoked Potentials, Auditory / physiology; Female; Interneurons / physiology; Male; Mice; Mice, Inbred BALB C; Mice, Inbred C57BL; Mice, Inbred CBA; Parvalbumins / metabolism; Somatostatin / metabolism; Sound
Source: Web Of Science
Added: August 16, 2021

2021 journal article

VolPy: Automated and scalable analysis pipelines for voltage imaging datasets

PLOS COMPUTATIONAL BIOLOGY, 17(4).

By: C. Cai n, J. Friedrich*, A. Singh*, M. Eybposh n, E. Pnevmatikakis*, K. Podgorski*, A. Giovannucci n

co-author countries: United States of America 🇺🇸
MeSH headings : Algorithms; Automation; Brain; Datasets as Topic; Electrophysiological Phenomena; Humans; Image Processing, Computer-Assisted / methods; Neuroimaging / methods; Neurons / physiology; Software
Source: Web Of Science
Added: May 17, 2021

2020 journal article

Limbs Detection and Tracking of Head-Fixed Mice for Behavioral Phenotyping Using Motion Tubes and Deep Learning

IEEE ACCESS, 8, 37891–37901.

By: W. Abbas*, D. Masip* & A. Giovannucci n

co-author countries: Spain 🇪🇸 United States of America 🇺🇸
author keywords: Tracking; Mice; Cameras; Electron tubes; Feature extraction; Training; Deep networks; motion detection; CNN; LSTM; optical flow; spatiotemporal; neuroscience; behavioral phenotyping
Source: Web Of Science
Added: May 8, 2020