Alon Greenbaum

Spiner, deep learning-based automated detection of spiral ganglion neurons in intact cochleae

Cai, Y., Leitz-Najarian, G. M., Rosen, R., Hutson, K. A., Moatti, A., Li, C., … Greenbaum, A. (2025, June 18). IScience.

A gene edited pig model for studying LGR5+ stem cells: implications for future applications in tissue regeneration and biomedical research

Hill, A. B. T., Murphy, Y. M., Polkoff, K. M., Edwards, L., Walker, D. M., Moatti, A., … Piedrahita, J. A. (2024, June 6). Frontiers in Genome Editing, Vol. 6.

Intelligent Beam Optimization for Light-Sheet Fluorescence Microscopy through Deep Learning

Li, C., Rai, M. R., Cai, Y., Ghashghaei, H. T., & Greenbaum, A. (2024, January 1). Intelligent Computing.

Novel Porcine Model Reveals Two Distinct LGR5 Cell Types during Lung Development and Homeostasis

Polkoff, K. M., Lampe, R., Gupta, N. K., Murphy, Y., Chung, J., Carter, A., … Piedrahita, J. A. (2024, November 5). American Journal of Respiratory Cell and Molecular Biology, Vol. 72, pp. 496–509.

Roadmap on computational methods in optical imaging and holography [invited]

Rosen, J., Alford, S., Allan, B., Anand, V., Arnon, S., Arockiaraj, F. G., … Ahmad, A. (2024, August 29). Applied Physics B.

Surgical procedure of intratympanic injection and inner ear pharmacokinetics simulation in domestic pigs

Frontiers in Pharmacology, 15.

Assessment of drug permeability through an ex vivo porcine round window membrane model

Moatti, A., Silkstone, D., Martin, T., Abbey, K., Hutson, K. A., Fitzpatrick, D. C., … Greenbaum, A. (2023, May 2). IScience.

Bulk and mosaic deletions of Egfr reveal regionally defined gliogenesis in the developing mouse forebrain

IScience, 26(3), 106242.

COMBINe enables automated detection and classification of neurons and astrocytes in tissue-cleared mouse brains

Cai, Y., Zhang, X., Li, C., Ghashghaei, H. T., & Greenbaum, A. (2023, April 1). Cell Reports Methods.

Deep learning-based adaptive optics for light sheet fluorescence microscopy

Rai, M. R., Li, C., Ghashghaei, H. T., & Greenbaum, A. (2023, May 19). Biomedical Optics Express.

Specific Inhibition of Orai1-mediated Calcium Signalling Resolves Inflammation and Clears Bacteria in an Acute Respiratory Distress Syndrome Model

Ahmad, S., Wrennall, J. A., Goriounova, A. S., Sekhri, M., Iskarpatyoti, J. A., Ghosh, A., … Tarran, R. (2023, November 16). American Journal of Respiratory and Critical Care Medicine.

Tissue clearing and three-dimensional imaging of the whole cochlea and vestibular system from multiple large-animal models

Moatti, A., Cai, Y., Li, C., Popowski, K. D., Cheng, K., Ligler, F. S., & Greenbaum, A. (2023, April 14). STAR Protocols.

Illumination angle correction during image acquisition in light-sheet fluorescence microscopy using deep learning

Li, C., Rai, M. R., Ghashghaei, H. T., & Greenbaum, A. (2022, January 6). Biomedical Optics Express.

Inhalable dry powder mRNA vaccines based on extracellular vesicles

Matter, 5(9), 2960–2974.

Maternal organophosphate flame retardant exposure alters the developing mesencephalic dopamine system in fetal rat

Newell, A. J., Kapps, V. A., Cai, Y., Rai, M. R., Armour, G. S., Horman, B. M., … Patisaul, H. B. (2022, December 22). Toxicological Sciences, Vol. 191, pp. 357–373.

Ontogeny of cellular organization and LGR5 expression in porcine cochlea revealed using tissue clearing and 3D imaging

Moatti, A., Li, C., Sivadanam, S., Cai, Y., Ranta, J., Piedrahita, J. A., … Greenbaum, A. (2022, June 30). IScience, Vol. 25.

Quantitative analysis of illumination and detection corrections in adaptive light sheet fluorescence microscopy

Rai, M. R., Li, C., & Greenbaum, A. (2022, April 18). Biomedical Optics Express.

Deep learning-based autofocus method enhances image quality in light-sheet fluorescence microscopy: publisher’s note

Li, C., Moatti, A., Zhang, X., Ghashghaei, H. T., & Greenbaum, A. (2021, December 8). Biomedical Optics Express.

Detection and classification of neurons and glial cells in the MADM mouse brain using RetinaNet

Cai, Y., Zhang, X., Kovalsky, S. Z., Ghashghaei, H. T., & Greenbaum, A. (2021, September 24). PLoS ONE.

Enhancement of Bone Regeneration Through the Converse Piezoelectric Effect, A Novel Approach for Applying Mechanical Stimulation

Carter, A., Popowski, K., Cheng, K., Greenbaum, A., Ligler, F. S., & Moatti, A. (2021, September 24). Bioelectricity, Vol. 9.

Light-guided sectioning for precise in situ localization and tissue interface analysis for brain-implanted optical fibers and GRIN lenses

Kahan, A., Greenbaum, A., Jang, M. J., Robinson, J. E., Cho, J. R., Chen, X., … Gradinaru, V. (2021, September 1). Cell Reports.

Multiplexed Cre-dependent selection yields systemic AAVs for targeting distinct brain cell types

Kumar, S. R., Miles, T. F., Chen, X., Brown, D., Dobreva, T., Huang, Q., … Gradinaru, V. (2020, April 20). Nature Methods.

Phenotyping Intact Mouse Bones Using Bone CLARITY

Treweek, J. B., Beres, A., Johnson, N., & Greenbaum, A. (2020, November 16). Methods in Molecular Biology.

Three-dimensional imaging of intact porcine cochlea using tissue clearing and custom-built light-sheet microscopy

Moatti, A., Cai, Y., Li, C., Sattler, T., Edwards, L., Piedrahita, J., … Greenbaum, A. (2020, September 30). Biomedical Optics Express, Vol. 11, pp. 6181–6196.