Works (4)

Updated: July 14th, 2023 21:14

2021 journal article

Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation

CURRENT BIOLOGY, 31(3), 591-+.

MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Cell Cycle; Cytosine; DNA Methylation; DNA, Plant; Gene Expression Regulation, Plant; Germ Cells / metabolism; Histones / genetics; Histones / metabolism; Plants / metabolism; RNA, Small Interfering / genetics
TL;DR: Comparative analysis with methylomes of various tissues and cell types suggests that loss of small-RNA-directed non-CG methylation during DNA replication promotes germline reprogramming and epigenetic variation in plants propagated as clones. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: December 4, 2020

2020 journal article

Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin(1)([OPEN])

PLANT PHYSIOLOGY, 183(1), 206–220.

By: E. Wheeler n, A. Brooks n, L. Concia n, D. Vera*, E. Wear n, C. LeBlanc*, U. Ramu*, M. Vaughn ...

MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Chromatin / metabolism; DNA Replication / genetics; DNA Replication / physiology; DNA, Plant / metabolism; DNA, Plant / physiology; Replication Origin / genetics; Replication Origin / physiology
TL;DR: A new functional assay to label and map very early replicating loci that must, by definition, include at least a subset of replication origins, and indicates that IRs are associated with accessible chromatin. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: June 15, 2020

2018 journal article

Genome-Wide Analysis of the Arabidopsis Replication Timing Program

PLANT PHYSIOLOGY, 176(3), 2166–2185.

By: L. Concia n, A. Brooks n, E. Wheeler n, G. Zynda, E. Wear n, C. LeBlanc*, J. Song, T. Lee n ...

MeSH headings : Arabidopsis / genetics; Chromatin / genetics; Chromatin / metabolism; Chromosomes, Plant; DNA Replication Timing; DNA Transposable Elements; Flow Cytometry; Genome, Plant; Genome-Wide Association Study; S Phase / genetics; Sequence Analysis, DNA / methods
TL;DR: The thymidine analog, 5-ethynyl-2′-deoxyuridine, is used in combination with flow sorting and Repli-Seq to describe the genome-wide replication timing program for Arabidopsis (Arabidopsis thaliana) Col-0 suspension cells, and genomic regions that replicate predominantly during early, mid, and late S phase are identified. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Estimation of heritability of benzoxazinoid production in rye (Secale cereale) using gas chromatographic analysis

PLANT BREEDING, 131(1), 104–109.

By: A. Brooks n, D. Danehower n, J. Murphy n, S. Reberg-Horton n & J. Burton n

author keywords: Secale cereale; allelopathy; DIBOA; benzoxazinoid; heritability
TL;DR: GC analysis was determined to be a good system for moderate throughput screening of lines and several genotypes were consistently ‘high’ or ‘low’ DIBOA producers across all locations and years. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

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