Works (64)

Updated: September 1st, 2023 05:00

2023 journal article

Biochemical characterization of a psychrophilic and halotolerant a-carbonic anhydrase from a deep-sea bacterium, Photobacterium profundum

AIMS MICROBIOLOGY, 9(3), 540–553.

By: V. Somalinga*, E. Foss* & A. Grunden n

author keywords: Photobacterium profundum; a-carbonic anhydrase; halotolerance; biomineralization; carbon capture
Sources: Web Of Science, ORCID
Added: July 19, 2023

2023 article

Nitrogen Fixation and Ammonium Assimilation Pathway Expression of Geobacter sulfurreducens Changes in Response to the Anode Potential in Microbial Electrochemical Cells

Ortiz-Medina, J. F., Poole, M. R., Grunden, A. M., & Call, D. F. (2023, March 28). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 3.

By: J. Ortiz-Medina n, M. Poole n, A. Grunden n & D. Call n

author keywords: electromicrobiology; Geobacter; nitrogen fixation
MeSH headings : Nitrogen Fixation; Ammonium Compounds / metabolism; Geobacter / metabolism; Electrodes; Nitrogenase / metabolism; Nitrogen / metabolism
Sources: Web Of Science, ORCID
Added: April 11, 2023

2023 article

Streptomyces spp. as biocatalyst sources in pulp and paper and textile industries: Biodegradation, bioconversion and valorization of waste

Cuebas-Irizarry, M. F., & Grunden, A. M. (2023, April 5). MICROBIAL BIOTECHNOLOGY, Vol. 4.

By: M. Cuebas-Irizarry n & A. Grunden n

Sources: ORCID, Web Of Science
Added: April 6, 2023

2023 journal article

Survivability of Salmonella Typhimurium (ATCC 14208) and Listeria innocua (ATCC 51742) on lignocellulosic materials for paper packaging

HELIYON, 9(3).

By: J. Zwilling*, J. Whitham*, F. Zambrano, A. Pifano*, A. Grunden*, H. Jameel*, R. Venditti*, R. Gonzalez*

author keywords: Lignocellulosic; Food safety; Paper; Survivability; Bacteria; Packaging
Sources: Web Of Science, ORCID
Added: May 9, 2023

2023 journal article

Trimming and Decontamination of Metagenomic Data can Significantly Impact Assembly and Binning Metrics, Phylogenomic and Functional Analysis

CURRENT BIOINFORMATICS, 18(5), 428–439.

By: J. Whitham n & A. Grunden n

author keywords: Trimming; decontamination; binning; assembly; metagenomics; MAG; QC; accessibility
Sources: Web Of Science, ORCID
Added: August 28, 2023

2022 article

Diversity and Structure of Bacterial Communities in Different Rhizocompartments (Rhizoplane, Rhizosphere, and Bulk) at Flag Leaf Emergence in Four Winter Wheat Varieties

Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Bak, F., Guan, Y., Horn Herms, C., … Nicolaisen, M. H. (2022, April 13). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 4.

By: A. Zervas*, L. Ellegaard-Jensen*, R. Hennessy*, F. Bak*, Y. Guan*, C. Horn Herms*, K. Molina Zamudio*, D. Thybo Ganzhorn* ...

Sources: Web Of Science, ORCID
Added: May 2, 2022

2022 article

Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage

Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Carbone, I., Cornish, V., … Nicolaisen, M. H. (2022, October 6). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 10.

Sources: Web Of Science, ORCID
Added: October 24, 2022

2022 article

Plasma-driven biocatalysis: In situ hydrogen peroxide production with an atmospheric pressure plasma jet increases the performance of OleT(JE) when compared to adding the same molar amount of hydrogen peroxide in bolus

Wapshott-Stehli, H. L., Myers, B. G., Quesada, M. J. H., Grunden, A., & Stapelmann, K. (2022, February 3). PLASMA PROCESSES AND POLYMERS, Vol. 2.

author keywords: atmospheric pressure plasma jet; biocatalysis; cytochrome P450 enzymes; hydrogen peroxide; plasma liquid chemistry
Sources: ORCID, Web Of Science
Added: February 4, 2022

2021 journal article

A review of clothing microbiology: the history of clothing and the role of microbes in textiles

BIOLOGY LETTERS, 17(1).

By: D. Sanders n, A. Grunden n & R. Dunn n

author keywords: clothing microbiology; textiles; fibres; degradation; microbes in clothing; microbiome
MeSH headings : Clothing; Humans; Laundering; Microbiota; Textiles
Sources: Web Of Science, ORCID
Added: February 15, 2021

2021 review

Bacterial valorization of pulp and paper industry process streams and waste

[Review of ]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 105(4), 1345–1363.

By: D. Brown n, J. Pawlak n & A. Grunden n

author keywords: Lignocellulose; Pulp and paper; Bacteria; Lignin; Cellulose; Hemicellulose
MeSH headings : Bacteria / metabolism; Biomass; Cellulose / metabolism; Fermentation; Industrial Waste / analysis; Lignin / metabolism; Paper
Sources: ORCID, Web Of Science
Added: January 23, 2021

2021 journal article

In situ H2O2 generation methods in the context of enzyme biocatalysis

ENZYME AND MICROBIAL TECHNOLOGY, 145.

By: H. Wapshott-Stehli n & A. Grunden n

author keywords: Hydrogen peroxide; Peroxidases; Unspecific peroxygenases; Biocatalysis
MeSH headings : Biocatalysis; Heme; Hydrogen; Hydrogen Peroxide
Sources: Web Of Science, ORCID
Added: April 19, 2021

2021 review

Leveraging Pseudomonas Stress Response Mechanisms for Industrial Applications

[Review of ]. FRONTIERS IN MICROBIOLOGY, 12.

By: K. Craig*, B. Johnson* & A. Grunden n

author keywords: stress; Pseudomonas; formulation; heat; desiccation; cold; biofilm; chaperone
Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

Plasma agriculture: Review from the perspective of the plant and its ecosystem

Plasma Processes and Polymers, 9.

By: P. Ranieri n, N. Sponsel n, J. Kizer n, M. Rojas‐Pierce n, R. Hernández n, L. Gatiboni n, A. Grunden n, K. Stapelmann n

author keywords: plant fertilizer; nonthermal plasma; plant development; seed germination; soil microbiome
Source: ORCID
Added: October 1, 2020

2021 journal article

Structure, Function, and Thermal Adaptation of the Biotin Carboxylase Domain Dimer from Hydrogenobacter thermophilus 2-Oxoglutarate Carboxylase

BIOCHEMISTRY, 60(4), 324–345.

By: G. Buhrman n, P. Enriquez n, L. Dillard n, H. Baer n, V. Truong n, A. Grunden n, R. Rose n

MeSH headings : Bacteria / enzymology; Bacterial Proteins / chemistry; Carbon-Nitrogen Ligases / chemistry; Crystallography, X-Ray; Enzyme Stability; Hot Temperature; Protein Domains; Structure-Activity Relationship
Sources: Web Of Science, ORCID
Added: January 20, 2021

2021 journal article

Temperature and solvent exposure response of three fatty acid peroxygenase enzymes for application in industrial enzyme processes

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 571, 60–65.

By: H. Wapshott-Stehli n & A. Grunden n

author keywords: Hydrogen peroxide; Cytochrome P450 (CYP450); Peroxygenases; Biocatalysis; OleT; CYP152K6
MeSH headings : Acetone / chemistry; Acetone / metabolism; Bacillus / enzymology; Dimethylformamide / chemistry; Dimethylformamide / metabolism; Fatty Acids / metabolism; Mixed Function Oxygenases / metabolism; Solvents / chemistry; Solvents / metabolism; Temperature
Sources: ORCID, Web Of Science
Added: July 23, 2021

2020 journal article

Bacterial exposure leads to variable mortality but not a measurable increase in surface antimicrobials across ant species

PEERJ, 8.

By: O. Halawani n, R. Dunn n, A. Grunden n & A. Smith n

author keywords: Entomopathogen; Metapleural gland; Social immunity; Bacterial exposure; Social insects; Sociobiology; Antimicrobial
Sources: Web Of Science, ORCID
Added: January 11, 2021

2020 journal article

Thermostable endoglucanase gene derived by amplification from the genomic DNA of a cellulose-enriched mixed culture from mudspring water of Mt. Makiling, Laguna, Philippines

WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 36(3).

By: R. Tambalo*, A. Raymundo* & A. Grunden n

author keywords: Endoglucanase; Saccharolobus; Mt; Makiling mudspring; Lignocellulose hydrolysis; Thermophiles
MeSH headings : Amino Acid Sequence; Archaea / enzymology; Archaea / genetics; Bacteria / enzymology; Bacteria / genetics; Base Sequence; Cellulase / genetics; Cellulase / metabolism; Cellulose / metabolism; Cloning, Molecular; DNA; Enzyme Stability; Escherichia coli / genetics; Genomics; Hydrogen-Ion Concentration; Molecular Weight; Philippines; Recombinant Proteins; Sequence Alignment; Sulfolobales / enzymology; Sulfolobales / genetics; Temperature; Water / metabolism; Water Microbiology
Sources: Web Of Science, ORCID
Added: April 6, 2020

2019 journal article

Nitrogen Gas Fixation and Conversion to Ammonium Using Microbial Electrolysis Cells

ACS Sustainable Chemistry & Engineering, 7(3), 3511–3519.

By: J. Ortiz-Medina n, A. Grunden n, M. Hyman n & D. Call n

author keywords: Nitrogen fixation; Ammonium production; Haber-Bosch; Microbial electrochemical technology; Geobacter
Sources: Crossref, ORCID, Web Of Science
Added: February 5, 2019

2019 journal article

Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste

ROYAL SOCIETY OPEN SCIENCE, 6(3).

By: S. Mathews*, M. Epps*, R. Blackburn n, M. Goshe n, A. Grunden n & R. Dunn n

author keywords: greenhouse camel cricket; hide beetle; Cedecea lapagei; lignocellulose; secretome
Sources: Web Of Science, ORCID
Added: May 28, 2019

2018 review

Bacteria and archaea as the sources of traits for enhanced plant phenotypes

[Review of ]. BIOTECHNOLOGY ADVANCES, 36(7), 1900–1916.

By: C. Smith-Moore n & A. Grunden n

author keywords: Abiotic Stress; Archaea; Bacteria; Carbon Fixation; Genetic Engineering; Nitrogen Acquisition; Phosphate Acquisition; Yield
MeSH headings : Archaea / genetics; Bacteria / genetics; Carbon Cycle; Genetic Engineering; Nitrogen / metabolism; Phenotype; Phosphates / metabolism; Photosynthesis; Plant Development; Plant Physiological Phenomena; Plants / genetics; Plants / microbiology; Plants, Genetically Modified; Stress, Physiological
Sources: Web Of Science, ORCID
Added: October 16, 2018

2018 journal article

Cloning, Over-Expression, and Purification of Carbonic Anhydrase from an Extremophilic Bacterium: An Introduction to Advanced Molecular Biology

AMERICAN BIOLOGY TEACHER, 80(1), 29–34.

By: V. Somalinga*, H. Klemmer n, A. Arun n, S. Mathews*, H. Wapshott n & A. Grunden n

author keywords: research methods; high school student research program; carbonic anhydrase; protein purification; protonography; Photobacterium profundum
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 review

Methods for enhancing cyanobacterial stress tolerance to enable improved production of biofuels and industrially relevant chemicals

[Review of ]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 102(4), 1617–1628.

By: R. Kitchener n & A. Grunden n

author keywords: Cyanobacteria; Biofuel; Stress tolerance; Stress response; Stress mitigation
MeSH headings : Alcohols / metabolism; Alcohols / toxicity; Alkanes / metabolism; Alkanes / toxicity; Biofuels / toxicity; Cyanobacteria / drug effects; Cyanobacteria / genetics; Cyanobacteria / physiology; Drug Tolerance; Ethylenes / metabolism; Ethylenes / toxicity; Fatty Acids / metabolism; Fatty Acids / toxicity; Genetic Engineering / methods; Industrial Microbiology / methods; Stress, Physiological
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Construction and setup of a bench-scale algal photosynthetic bioreactor with temperature, light, and ph monitoring for kinetic growth tests

Jove-Journal of Visualized Experiments, (124).

By: A. Karam, C. McMillan, Y. Lai, F. Reyes, H. Sederoff, A. Grunden, R. Ranjithan, J. Levis, J. Ducoste

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Escherichia coli O157:H7 Acid Sensitivity Correlates with Flocculation Phenotype during Nutrient Limitation

FRONTIERS IN MICROBIOLOGY, 8.

By: K. Kay n, F. Breidt n, P. Fratamico*, G. Baranzoni*, G. Kim*, A. Grunden n, D. Oh*

author keywords: STEC; acid resistance; nutrient limitation; curli; GcvB
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Revisiting Graduate Student Training to Address Agricultural and Environmental Societal Challenges

Agricultural & Environmental Letters, 2(1), 170019.

By: O. Duckworth n, M. Andrews n, M. Cubeta n, A. Grunden n & P. Ojiambo n

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

A High-Resolution Crystal Structure of a Psychrohalophilic alpha-Carbonic Anhydrase from Photobacterium profundum Reveals a Unique Dimer Interface

PLOS ONE, 11(12).

By: V. Somalinga n, G. Buhrman n, A. Arun n, R. Rose n & A. Grunden n

Ed(s): A. Hofmann

MeSH headings : Carbonic Anhydrases / chemistry; Chlorides / chemistry; Chromatography, Gel; Crystallography, X-Ray; Dimerization; Molecular Dynamics Simulation; Photobacterium / enzymology; Protein Conformation
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Characterization of Clostridium ljungdahlii OTA1: a non-autotrophic hyper ethanol-producing strain

Applied Microbiology and Biotechnology, 101(4), 1615–1630.

By: J. Whitham n, M. Schulte n, B. Bobay*, J. Bruno-Barcena n, M. Chinn n, M. Flickinger n, J. Pawlak n, A. Grunden n

author keywords: Acetyl-coA; Carbon monoxide dehydrogenase; Clostridium ljungdahlii; Ethanol; Wood-Ljungdahl pathway
MeSH headings : Acetyl Coenzyme A / metabolism; Aldehyde Oxidoreductases / metabolism; Carbon Dioxide / metabolism; Carbon Monoxide / metabolism; Clostridium / metabolism; Ethanol / metabolism; Multienzyme Complexes / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Degradation of lignocellulose and lignin by Paenibacillus glucanolyticus

INTERNATIONAL BIODETERIORATION & BIODEGRADATION, 110, 79–86.

By: S. Mathews n, A. Grunden n & J. Pawlak n

author keywords: Lignin degradation; Lignocellulose degradation; Paenibacillus glucanolyticus; Bioproducts
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Enhancing Heat Tolerance of the Little Dogwood Cornus canadensis L. f. with Introduction of a Superoxide Reductase Gene from the Hyperthermophilic Archaeon Pyrococcus furiosus

Frontiers in Plant Science, 7.

By: X. Geng n, X. Liu n, M. Ji n, W. Hoffmann n, A. Grunden n & Q. Xiang n

author keywords: antioxidant enzyme; Cornus canadensis; genetic transformation; heat tolerance; Pyrococcus furiosus; reactive oxygen species (ROS); superoxide reductase (SOR)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Microbial diversity of extreme habitats in human homes

PeerJ, 4(9), e2376.

By: A. Savage*, J. Hills*, K. Driscoll, D. Fergus*, A. Grunden n & R. Dunn n

author keywords: Community Ecology; Extreme environments; Human Homes; Interactive effects; Microbialdiversity; Temperature; pH; Chemical
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2016 journal article

Purification and characterization of a recombinant laccase-like multi-copper oxidase from Paenibacillus glucanolyticus SLM1

JOURNAL OF APPLIED MICROBIOLOGY, 121(5), 1335–1345.

By: S. Mathews n, C. Smithson* & A. Grunden n

author keywords: dye decolorization; laccase; lignin degradation; Paenibacillus glucanolyticus SLM1; recombinant expression
MeSH headings : Benzothiazoles / metabolism; Catechols / metabolism; Coloring Agents / metabolism; Hydrogen-Ion Concentration; Oxidoreductases / chemistry; Oxidoreductases / genetics; Oxidoreductases / isolation & purification; Oxidoreductases / metabolism; Paenibacillus / enzymology; Pyrogallol / analogs & derivatives; Pyrogallol / metabolism; Recombinant Proteins / chemistry; Recombinant Proteins / isolation & purification; Recombinant Proteins / metabolism; Sulfonic Acids / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

A novel gateway-compatible binary vector series (PC-GW) for flexible cloning of multiple genes for genetic transformation of plants

PLASMID, 81, 55–62.

By: J. Dalal n, R. Yalamanchili n, C. Hovary n, M. Ji n, M. Rodriguez-Welsh n, D. Aslett n, S. Ganapathy n, A. Grunden n ...

author keywords: Gateway; Plant transformation; Agrobacterium; Gene stacking
MeSH headings : Cloning, Molecular / methods; Gene Expression; Gene Order; Genes, Reporter; Genetic Vectors / genetics; Plants, Genetically Modified; Plasmids / genetics; Transformation, Genetic; Transgenes
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Bacterial biodegradation and bioconversion of industrial lignocellulosic streams

Applied Microbiology and Biotechnology, 99(7), 2939–2954.

By: S. Mathews n, J. Pawlak n & A. Grunden n

author keywords: Bacteria; Biodegradation; Cellulose; Hemicellulose; Lignin; Lignocellulose
MeSH headings : Bacteria / growth & development; Bacteria / metabolism; Biodegradation, Environmental; Biotechnology / methods; Cellulose / chemistry; Cellulose / metabolism; Enzymes / genetics; Enzymes / metabolism; Fungi / metabolism; Industrial Waste; Lignin / chemistry; Lignin / metabolism; Polysaccharides / chemistry; Polysaccharides / metabolism; Recombinant Proteins / genetics; Recombinant Proteins / metabolism; Waste Management / methods
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Characterization of recombinant glutathione reductase from the psychrophilic Antarctic bacterium Colwellia psychrerythraea

EXTREMOPHILES, 19(4), 863–874.

By: M. Ji n, C. Barnwell n & A. Grunden n

author keywords: Colwellia psychrerythraea; Glutathione reductase; Psychrophile; Oxidative stress; Antioxidant enzyme
MeSH headings : Alteromonadaceae / enzymology; Alteromonadaceae / genetics; Antarctic Regions; Bacterial Proteins / biosynthesis; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Glutathione Reductase / biosynthesis; Glutathione Reductase / chemistry; Glutathione Reductase / genetics; Recombinant Proteins / biosynthesis; Recombinant Proteins / chemistry; Recombinant Proteins / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Metabolic Response of Clostridium ljungdahlii to Oxygen Exposure

Applied and Environmental Microbiology, 81(24), 8379–8391.

By: J. Whitham n, O. Tirado-Acevedo n, M. Chinn n, J. Pawlak n & A. Grunden n

Ed(s): R. Parales

MeSH headings : Acetates / metabolism; Aldehyde Oxidoreductases / metabolism; Base Sequence; Biofuels / microbiology; Bioreactors / microbiology; Carbon Dioxide / metabolism; Clostridium / enzymology; Clostridium / growth & development; Clostridium / metabolism; DNA, Bacterial / genetics; Energy Metabolism / physiology; Ethanol / metabolism; Fermentation / physiology; Gene Expression / drug effects; Molecular Sequence Data; Oxidation-Reduction / drug effects; Oxidoreductases / metabolism; Oxygen / metabolism; Oxygen / pharmacology; Reactive Oxygen Species / metabolism; Sequence Alignment; Sequence Analysis, DNA
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies

Scientific Data, 2(1).

MeSH headings : Algorithms; Clostridium / genetics; Genome, Bacterial; Genomics; Sequence Analysis, DNA / methods
Sources: Crossref, ORCID
Added: March 4, 2019

2014 review

Biotechnological applications of halophilic lipases and thioesterases

[Review of ]. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 98(3), 1011–1021.

By: S. Schreck n & A. Grunden n

author keywords: Lipase; Thioesterase; Halophilic; Halotolerant; Biofuel; Algae; Dunaliella
MeSH headings : Biotechnology / methods; Lipase / metabolism; Thiolester Hydrolases / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Isolation of Paenibacillus glucanolyticus from pulp mill sources with potential to deconstruct pulping waste

BIORESOURCE TECHNOLOGY, 164, 100–105.

By: S. Mathews n, J. Pawlak n & A. Grunden n

author keywords: Biodegradation (bacterial degradation); Pulp mill waste; Black liquor; Lignin; Paenibacillus glucanolyticus
MeSH headings : Anaerobiosis / drug effects; Biomass; Carbon / pharmacology; Fermentation / drug effects; Gas Chromatography-Mass Spectrometry; Hydrogen-Ion Concentration; Industrial Waste; Lignin / metabolism; Paenibacillus / genetics; Paenibacillus / growth & development; Paenibacillus / isolation & purification; Paper; RNA, Ribosomal, 16S / genetics; Temperature
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

ASI:Dunaliellamarine microalgae to drop-in replacement liquid transportation fuel

Environmental Progress & Sustainable Energy, 32(4), 916–925.

By: W. Wang n, E. Allen n, A. Campos n, R. Cade n, L. Dean*, M. Dvora n, J. Immer n, S. Mixson n ...

Sources: Crossref, ORCID
Added: March 1, 2020

2012 journal article

A versatile method for preparation of hydrated microbial–latex biocatalytic coatings for gas absorption and gas evolution

Journal of Industrial Microbiology & Biotechnology, 39(9), 1269–1278.

By: J. Gosse n, M. Chinn n, A. Grunden n, O. Bernal n, J. Jenkins n, C. Yeager*, S. Kosourov*, M. Seibert*, M. Flickinger n

author keywords: Latex coating immobilization on chromatography paper; Chlamydomonas; Rhodopseudomonas; Clostridium; Synechococcus
MeSH headings : Absorption; Bacterial Adhesion; Biocatalysis; Bioreactors; Carbon Dioxide / metabolism; Carbon Monoxide / metabolism; Gases / chemistry; Gases / metabolism; Hydrogen / metabolism; Latex / chemistry; Oxygen / metabolism; Paper; Rhodopseudomonas / growth & development; Rhodopseudomonas / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Evaluation of a quantitative H2S MPN test for fecal microbes analysis of water using biochemical and molecular identification

WATER RESEARCH, 46(6), 1693–1704.

By: L. McMahan*, A. Grunden n, A. Devine* & M. Sobsey*

author keywords: Quantitative H2S test; Microbial water quality; TRFLP; Fecal indicator
MeSH headings : Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Cell Culture Techniques; DNA, Bacterial / genetics; DNA, Bacterial / isolation & purification; Environmental Monitoring / methods; Feces / microbiology; Genome, Bacterial / genetics; Hydrogen Sulfide / pharmacology; Lakes / microbiology; North Carolina; Polymorphism, Restriction Fragment Length; Rain / microbiology; Software; Software Design; Species Specificity; Universities; Water; Water Microbiology; Water Wells / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 review

Prolidase function in proline metabolism and its medical and biotechnological applications

[Review of ]. JOURNAL OF APPLIED MICROBIOLOGY, 113(2), 233–247.

By: R. Kitchener n & A. Grunden n

author keywords: biotechnology; degradation; diagnosis; enzymes; peptides
MeSH headings : Animals; Archaea / enzymology; Bacteria / enzymology; Biodegradation, Environmental; Biotechnology; Collagen / metabolism; Dipeptidases / deficiency; Dipeptidases / metabolism; Dipeptidases / therapeutic use; Enzyme Replacement Therapy; Food Industry; Humans; Proline / metabolism; Protein Structure, Tertiary
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Improving the Catalytic Activity of Hyperthermophilic Pyrococcus horikoshii Prolidase for Detoxification of Organophosphorus Nerve Agents over a Broad Range of Temperatures

Archaea, 2011, 1–9.

By: C. Theriot*, R. Semcer n, S. Shah & A. Grunden n

Ed(s): B. C.M. & S. Shah

MeSH headings : Biotransformation; Chemical Warfare Agents / metabolism; Dipeptidases / genetics; Dipeptidases / metabolism; Enzyme Stability; Hydrogen-Ion Concentration; Mutant Proteins / genetics; Mutant Proteins / metabolism; Mutation; Organophosphates / metabolism; Pyrococcus horikoshii / chemistry; Pyrococcus horikoshii / enzymology; Pyrococcus horikoshii / metabolism; Sarin / metabolism; Soman / metabolism; Temperature
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2011 journal article

Validation of the H2S method to detect bacteria of fecal origin by cultured and molecular methods

Applied Microbiology and Biotechnology, 92(6), 1287–1295.

By: L. McMahan*, A. Devine*, A. Grunden n & M. Sobsey*

author keywords: H2S test; TRFLP; Microbial water quality
MeSH headings : Amplified Fragment Length Polymorphism Analysis / methods; Bacteria / chemistry; Bacteria / genetics; Bacteria / isolation & purification; Bacteria / metabolism; Biochemistry / methods; Feces / microbiology; Hydrogen Sulfide / analysis; Hydrogen Sulfide / metabolism; Polymorphism, Restriction Fragment Length; Water Microbiology; Water Pollution / analysis
Sources: Crossref, ORCID
Added: September 8, 2020

2010 journal article

Basal Signaling Regulates Plant Growth and Development

PLANT PHYSIOLOGY, 154(2), 439–443.

By: W. Boss n, H. Sederoff n, Y. Im n, N. Moran n, A. Grunden n & I. Perera n

MeSH headings : Plant Development; Plant Physiological Phenomena; Second Messenger Systems
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Hydrolysis of organophosphorus compounds by microbial enzymes

Applied Microbiology and Biotechnology, 89(1), 35–43.

By: C. Theriot n & A. Grunden n

author keywords: Organophosphorus compound; OP nerve agent; Pesticide; OPAA; OPH; Phosphotriesterase; Prolidase
MeSH headings : Aryldialkylphosphatase / chemistry; Aryldialkylphosphatase / genetics; Aryldialkylphosphatase / metabolism; Bacteria / chemistry; Bacteria / enzymology; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Biocatalysis; Hydrolysis; Kinetics; Organophosphorus Compounds / chemistry; Substrate Specificity
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2010 journal article

Improving the catalytic activity of hyperthermophilic Pyrococcus prolidases for detoxification of organophosphorus nerve agents over a broad range of temperatures

Applied Microbiology and Biotechnology, 87(5), 1715–1726.

By: C. Theriot n, X. Du n, S. Tove n & A. Grunden n

author keywords: Prolidase; Pyrococcus furiosus; OP nerve agents; Mutagenesis; Directed evolution
MeSH headings : Amino Acid Substitution / genetics; Archaeal Proteins / chemistry; Archaeal Proteins / genetics; Archaeal Proteins / isolation & purification; Archaeal Proteins / metabolism; Chemical Warfare Agents / metabolism; Culture Media / chemistry; Dipeptidases / chemistry; Dipeptidases / genetics; Dipeptidases / isolation & purification; Dipeptidases / metabolism; Enzyme Stability; Escherichia coli / genetics; Models, Molecular; Mutagenesis; Organophosphorus Compounds / metabolism; Pesticides / metabolism; Plasmids; Polymerase Chain Reaction / methods; Protein Stability; Protein Structure, Tertiary; Pyrococcus furiosus / enzymology; Pyrococcus furiosus / genetics; Sequence Deletion; Temperature
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2010 review

Production of biofuels from synthesis gas using microbial catalysts

[Review of ]. Advances in applied microbiology, vol 70, 70, 57–92.

By: O. Tirado-Acevedo, M. Chinn & A. Grunden

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

Characterization of two proline dipeptidases (prolidases) from the hyperthermophilic archaeon Pyrococcus horikoshii

Applied Microbiology and Biotechnology, 86(1), 177–188.

By: C. Theriot n, S. Tove n & A. Grunden n

author keywords: Prolidase; Pyrococcus horikoshii; Hyperthermophile; Metalloenzyme; Cobalt enzyme
MeSH headings : Amino Acid Sequence; Archaeal Proteins / chemistry; Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Biotechnology / methods; Catalytic Domain; Cobalt / metabolism; Dipeptidases / chemistry; Dipeptidases / genetics; Dipeptidases / metabolism; Enzyme Stability; Hot Temperature; Hydrogen-Ion Concentration; Molecular Sequence Data; Pyrococcus horikoshii / enzymology; Pyrococcus horikoshii / genetics; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Recombinant Proteins / metabolism; Substrate Specificity
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2009 journal article

Effects of antibiotics and oil on microbial profiles and fermentation in mixed cultures of ruminal microorganisms

JOURNAL OF DAIRY SCIENCE, 92(9), 4467–4480.

By: M. Johnson*, A. Devine n, J. Ellis, A. Grunden n & V. Fellner*

author keywords: ionophore; soybean oil; rumen microbial diversity; continuous culture
MeSH headings : Ammonia / metabolism; Animals; Anti-Bacterial Agents / pharmacology; Bacteria / classification; Bacteria / drug effects; Biodiversity; Bioreactors; Cattle; Fatty Acids, Volatile / metabolism; Female; Fermentation / drug effects; Hydrogen-Ion Concentration; In Vitro Techniques; Methane / metabolism; Rumen / microbiology; Soybean Oil / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Erratum to: Characterization of two proline dipeptidases (prolidases) from the hyperthermophilic archaeon Pyrococcus horikoshii

Applied Microbiology and Biotechnology, 86(1), 393–393.

By: C. Theriot n, S. Tove n & A. Grunden n

Sources: Crossref, ORCID
Added: January 21, 2021

2009 journal article

Ethanol and acetate production by Clostridium ljungdahlii and Clostridium autoethanogenum using resting cells

BIOPROCESS AND BIOSYSTEMS ENGINEERING, 32(3), 369–380.

By: J. Cotter n, M. Chinn n & A. Grunden n

author keywords: Clostridium ljungdahlii; Clostridium autoethanaogenum; Ethanol; Acetate; Resting cells; Non-growing cells
MeSH headings : Acetates / metabolism; Cell Culture Techniques / methods; Clostridium / chemistry; Clostridium / classification; Clostridium / growth & development; Clostridium / metabolism; Ethanol / metabolism; Hydrogen-Ion Concentration; Nitrogen / metabolism; Species Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Expression of Pyrococcus furiosus Superoxide Reductase in Arabidopsis Enhances Heat Tolerance

PLANT PHYSIOLOGY, 151(2), 893–904.

By: Y. Im n, M. Ji n, A. Lee n, R. Killens n, A. Grunden n & W. Boss n

MeSH headings : Adaptation, Physiological; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Ascorbate Peroxidases; Chlorophyll / metabolism; Gene Expression Regulation, Plant; Germination; Heat-Shock Response; Hot Temperature; Hydrogen Peroxide / metabolism; Immunoprecipitation; Oxidoreductases / genetics; Oxidoreductases / metabolism; Peroxidases / metabolism; Plant Extracts / metabolism; Plant Leaves / metabolism; Plant Roots / metabolism; Plants, Genetically Modified; Pyrococcus furiosus / enzymology; RNA, Messenger / genetics; RNA, Messenger / metabolism; Seedlings / enzymology; Seeds / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Influence of process parameters on growth of Clostridium ljungdahlii and Clostridium autoethanogenum on synthesis gas

ENZYME AND MICROBIAL TECHNOLOGY, 44(5), 281–288.

By: J. Cotter n, M. Chinn n & A. Grunden n

author keywords: Clostridium ljungdahlii; Clostridium autoethanaogenum; Synthesis gas fermentation; Ethanol; Acetate
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Molecular characterization of the recombinant iron-containing alcohol dehydrogenase from the hyperthermophilic Archaeon, Thermococcus strain ES1

EXTREMOPHILES, 13(2), 299–311.

By: X. Ying*, A. Grunden n, L. Nie*, M. Adams* & K. Ma*

author keywords: Iron-containing alcohol dehydrogenase; Heterologous expression; Hyperthermophile; Archaea; Thermococcus
MeSH headings : Alcohol Dehydrogenase / chemistry; Amino Acid Sequence; Archaea; Cloning, Molecular; Hydrogen-Ion Concentration; Iron / chemistry; Kinetics; Molecular Sequence Data; NADP / metabolism; Protein Structure, Tertiary; Recombinant Proteins / chemistry; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Temperature; Thermococcus / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Proteomics of Pyrococcus furiosus, a Hyperthermophilic Archaeon Refractory to Traditional Methods

JOURNAL OF PROTEOME RESEARCH, 8(8), 3844–3851.

By: A. Lee n, J. Sevinsky n, J. Bundy n, A. Grunden n & J. Stephenson n

author keywords: Pyrococcus furiosus; shotgun proteomics; archaea; hyperthermophile; high throughput; IPG-IEF; LC-MS/MS; archaeal proteins; microwave assisted acid hydrolysis
MeSH headings : Archaeal Proteins / analysis; Archaeal Proteins / metabolism; Hydrogen-Ion Concentration; Hydrolysis; Isoelectric Point; Microwaves; Peptide Fragments / analysis; Peptide Fragments / metabolism; Peptide Mapping; Protein Conformation; Proteome / analysis; Proteome / metabolism; Proteomics / methods; Pyrococcus furiosus / chemistry; Trypsin / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 review

biotechnological applications of recombinant microbial prolidases

[Review of ]. Advances in applied microbiology, vol 68, 68, 99-.

By: C. Theriot, S. Tove & A. Grunden

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Characterization of the dinuclear metal center of Pyrococcus furiosus prolidase by analysis of targeted mutants

FEBS LETTERS, 579(27), 6140–6146.

By: X. Du*, S. Tove, K. Kast-Hutcheson & A. Grunden*

author keywords: prolidase; aminopeptidase; dinuclear metal center; cobalt enzyme; Pyrococcus furiosus
MeSH headings : Archaeal Proteins / chemistry; Archaeal Proteins / genetics; Binding Sites; Catalysis; Cobalt / chemistry; Dipeptidases / chemistry; Dipeptidases / genetics; Mutation; Pyrococcus furiosus / enzymology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

In vitro reconstitution of an NADPH-dependent superoxide reduction pathway from Pyrococcus furiosus

APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 71(3), 1522–1530.

By: A. Grunden n, F. Jenney*, K. Ma*, M. Ji n, M. Weinberg* & M. Adams*

MeSH headings : Amino Acid Sequence; Base Sequence; Biophysical Phenomena; Biophysics; DNA, Archaeal / genetics; Genes, Archaeal; Hydrogen Peroxide / metabolism; Kinetics; Molecular Sequence Data; NADH, NADPH Oxidoreductases / chemistry; NADH, NADPH Oxidoreductases / genetics; NADH, NADPH Oxidoreductases / metabolism; NADP / metabolism; Oxidation-Reduction; Pyrococcus furiosus / genetics; Pyrococcus furiosus / metabolism; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Recombinant Proteins / metabolism; Sequence Homology, Amino Acid; Superoxides / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Production of a thermostable archaeal superoxide reductase in plant cells

FEBS LETTERS, 579(25), 5521–5526.

By: Y. Im n, M. Ji n, A. Lee n, W. Boss n & A. Grunden n

author keywords: archaeal; heat-stress; hyperthermophile; plant; reactive oxygen species; superoxide dismutase; superoxide reductase
MeSH headings : Archaeal Proteins / analysis; Archaeal Proteins / biosynthesis; Archaeal Proteins / genetics; Cells, Cultured; Cytoplasm / chemistry; Enzyme Stability; Green Fluorescent Proteins / analysis; Green Fluorescent Proteins / biosynthesis; Hot Temperature; Oxidoreductases / analysis; Oxidoreductases / biosynthesis; Oxidoreductases / genetics; Plants, Genetically Modified / cytology; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Pyrococcus furiosus / enzymology; Recombinant Fusion Proteins / analysis; Recombinant Fusion Proteins / biosynthesis; Superoxides / metabolism; Tobacco / cytology; Tobacco / genetics; Tobacco / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

Structure of the Prolidase fromPyrococcus furiosus†

Biochemistry, 43(10), 2771–2783.

By: M. Maher*, M. Ghosh*, A. Grunden*, A. Menon*, M. Adams*, H. Freeman*, J. Guss*

MeSH headings : Archaeal Proteins / antagonists & inhibitors; Archaeal Proteins / chemistry; Binding Sites; Cobalt / chemistry; Crystallization; Crystallography, X-Ray; Dimerization; Dipeptidases / antagonists & inhibitors; Dipeptidases / chemistry; Oligopeptides / chemistry; Proline / analogs & derivatives; Protease Inhibitors / chemistry; Pyrococcus furiosus / enzymology; Zinc / chemistry
Sources: Crossref, ORCID
Added: January 24, 2021

2004 journal article

Synthesis/degradation ratio mass spectrometry for measuring relative dynamic protein turnover

ANALYTICAL CHEMISTRY, 76(1), 86–97.

By: B. Cargile n, J. Bundy n, A. Grunden n & J. Stephenson n

MeSH headings : Bacterial Proteins / analysis; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Base Sequence / genetics; Mass Spectrometry / methods; Sequence Analysis, Protein / methods; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 journal article

Molybdate transport

RESEARCH IN MICROBIOLOGY, 152(3-4), 311–321.

By: W. Self, A. Grunden*, A. Hasona & K. Shanmugam

author keywords: molybdate transport; genetics; biochemistry; bacteria; archaea
MeSH headings : ATP-Binding Cassette Transporters / genetics; ATP-Binding Cassette Transporters / metabolism; Bacterial Proteins / metabolism; Carrier Proteins / metabolism; Escherichia coli / metabolism; Escherichia coli Proteins / metabolism; Ion Transport; Molybdenum / metabolism; Multigene Family; Operon; Periplasmic Binding Proteins; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 journal article

Proline dipeptidase from Pyrococcus furiosus

Hyperthermophilic Enzymes. Part A, 330, 433–445.

By: A. Grunden n, M. Ghosh & M. Adams

MeSH headings : Amino Acid Sequence; Base Sequence; DNA Primers; Dipeptidases / chemistry; Dipeptidases / isolation & purification; Dipeptidases / metabolism; Enzyme Stability; Molecular Sequence Data; Protein Conformation; Pyrococcus furiosus / enzymology; Recombinant Proteins / chemistry; Recombinant Proteins / isolation & purification; Recombinant Proteins / metabolism; Sequence Homology, Amino Acid
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

Employment

Updated: December 30th, 2019 15:44

2000 - present

North Carolina State University Raleigh, NC, US
William Neal Reynolds Distinguished Professor of Microbiology Plant and Microbial Biology

Education

Updated: December 30th, 2019 15:47

1993 - 1996

University of Florida Gainesville, FL, US
PhD Microbiology and Cell Science