Genomics, Genetics, Cotton, Marker Development, Physical Mapping, Genome Assembly
2024 journal article
A Blueberry (<i> Vaccinium</i> L.) Crop Ontology to Enable Standardized Phenotyping for Blueberry Breeding and Research
HORTSCIENCE, 59(10), 1433–1442.
2024 journal article
CitDet: A Benchmark Dataset for Citrus Fruit Detection
IEEE Robotics and Automation Letters.
2023 journal article
A first look at the ability to use genomic prediction for improving the ratooning ability of sugarcane
FRONTIERS IN PLANT SCIENCE, 14.
2023 journal article
Detecting Cotton Leaf Curl Virus Resistance Quantitative Trait Loci in Gossypium hirsutum and iCottonQTL a New R/Shiny App to Streamline Genetic Mapping
PLANTS-BASEL, 12(5).
2023 journal article
Initiation of genomics-assisted breeding in Virginia-type peanuts through the generation of a de novo reference genome and informative markers
FRONTIERS IN PLANT SCIENCE, 13.
2023 journal article
Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa
BMC GENOMICS, 24(1).
2023 journal article
Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning
FRONTIERS IN PLANT SCIENCE, 14.
2023 journal article
Two haplotype-resolved genomes reveal important flower traits in bigleaf hydrangea (Hydrangea macrophylla) and insights into Asterid evolution
HORTICULTURE RESEARCH, 10(12).
2023 journal article
Two pathogen loci determine <i>Blumeria graminis
New Phytologist, 238(4), 1546–1561.
2022 article
Chromosome-scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication
Chang, J., Marczuk-Rojas, J. P., Waterman, C., Garcia-Llanos, A., Chen, S., Ma, X., … Carretero-Paulet, L. (2022, July 27). PLANT GENOME, Vol. 7.
2022 article
Efficient imaging and computer vision detection of two cell shapes in young cotton fibers
Graham, B. P., Park, J., Billings, G. T., Hulse-Kemp, A. M., Haigler, C. H., & Lobaton, E. (2022, November 26). APPLICATIONS IN PLANT SCIENCES, Vol. 11.
2022 article
Genetic variability and QTL mapping of winter survivability and leaf firing in African bermudagrass
Yu, S., Schoonmaker, A. N., Yan, L., Hulse-Kemp, A. M., Fontanier, C. H., Martin, D. L., … Wu, Y. Q. (2022, October 26). CROP SCIENCE, Vol. 10.
2022 journal article
Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon
NATURE COMMUNICATIONS, 13(1).
2022 journal article
Leveraging National Germplasm Collections to Determine Significantly Associated Categorical Traits in Crops: Upland and Pima Cotton as a Case Study
FRONTIERS IN PLANT SCIENCE, 13.
2022 journal article
Nuclear DNA contents and ploidy levels of North American Vaccinium species and interspecific hybrids
SCIENTIA HORTICULTURAE, 297.
2022 journal article
Outlook for Implementation of Genomics-Based Selection in Public Cotton Breeding Programs
PLANTS-BASEL, 11(11).
2022 journal article
There and back again; historical perspective and future directions for Vaccinium breeding and research studies
HORTICULTURE RESEARCH, 9.
2021 article
An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids
Hulse-Kemp, A. M., Bostan, H., Chen, S., Ashrafi, H., Stoffel, K., Sanseverino, W., … Van Deynze, A. (2021, June 10). PLANT GENOME, Vol. 6.
2021 journal article
Genomic Resource Development for Hydrangea (Hydrangea macrophylla (Thunb.) Ser.)-A Transcriptome Assembly and a High-Density Genetic Linkage Map
HORTICULTURAE, 7(2).
2021 journal article
High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii)
HORTICULTURE RESEARCH, 8(1).
2021 journal article
Population structure and genetic diversity of the Pee Dee cotton breeding program
G3-GENES GENOMES GENETICS, 11(7).
Contributors: G. Billings n , M. Jones *, S. Rustgi *, n & B. Campbell *
2019 journal article
Capsicum-An Abbreviated Compendium
JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, 144(1), 3–22.
2019 journal article
Enhancing Upland cotton for drought resilience, productivity, and fiber quality: comparative evaluation and genetic dissection
MOLECULAR GENETICS AND GENOMICS, 295(1), 155–176.
2018 journal article
Feeding high-oleic peanuts to layer hens enhances egg yolk color and oleic fatty acid content in shell eggs
Poultry Science, 98(4), 1732–1748.
2018 journal article
Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library
HORTICULTURE RESEARCH, 5.
2018 journal article
Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection
PLANT GENOME, 12(1).
2017 journal article
Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array.
BMC Plant Biology, 17(1), 37,
2017 article
Reference Quality Assembly of the 3.5 Gb genome ofCapsicum annuumfrom a Single Linked-Read Library
Hulse-Kemp, A. M., Maheshwari, S., Stoffel, K., Hill, T. A., Jaffe, D., Williams, S., … Deynze, A. V. (2017, June 20).
2016 journal article
A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding
HORTICULTURE RESEARCH, 3(1).
2016 journal article
Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton.
PLoS Genetics, 12(7), 1006206,
2016 journal article
DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton
PLOS GENETICS, 12(5).
Ed(s): K. Bomblies
2015 journal article
BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping.
G3&Amp;#58; Genes|Genomes|Genetics, 5(6), 1095–1105.
2015 journal article
Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.
5(6), 1187–1209,
2015 journal article
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.
Nature Biotechnology, 33(5), 531–537,
2014 journal article
Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts.
BMC Genomics, 15(1), 945.
2013 journal article
Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations
J Anim Sci Biotechnol, 4(1), 30.
2013 journal article
Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing
G3&Amp;#58; Genes|Genomes|Genetics, 3(10), 1809â1818.
2012 journal article
Evolutionary Analysis of Sequence Divergence and Diversity of Duplicate Genes in Aspergillus fumigatus
EBO, 11, 623.
2012 journal article
Genetic Variants Contribute to Gene Expression Variability in Humans
Genetics, 193(1), 95â108.
Updated: June 20th, 2017 15:39
2016 - present
Updated: July 20th, 2014 09:56
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