Amanda Hulse-Kemp

Islam, M. S., Corak, K., McCord, P., Hulse-Kemp, A. M., & Lipka, A. E. (2023). A first look at the ability to use genomic prediction for improving the ratooning ability of sugarcane. FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1205999

Schoonmaker, A. N., Hulse-Kemp, A. M., Youngblood, R. C., Rahmat, Z., Iqbal, M. A., Rahman, M.-ur, … Scheffler, J. A. (2023). Detecting Cotton Leaf Curl Virus Resistance Quantitative Trait Loci in Gossypium hirsutum and iCottonQTL a New R/Shiny App to Streamline Genetic Mapping. PLANTS-BASEL, 12(5). https://doi.org/10.3390/plants12051153

Newman, C. S. S., Andres, R. J. J., Youngblood, R. C. C., Campbell, J. D. D., Simpson, S. A. A., Cannon, S. B. B., … Dunne, J. C. C. (2023). Initiation of genomics-assisted breeding in Virginia-type peanuts through the generation of a de novo reference genome and informative markers. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.1073542

Huff, M., Hulse-Kemp, A. M., Scheffler, B. E., Youngblood, R. C., Simpson, S. A., Babiker, E., & Staton, M. (2023). Long-read, chromosome-scale assembly of Vitis rotundifolia cv. Carlos and its unique resistance to Xylella fastidiosa subsp. fastidiosa. BMC GENOMICS, 24(1). https://doi.org/10.1186/s12864-023-09514-y

Delorean, E. E., Youngblood, R. C., Simpson, S. A., Schoonmaker, A. N., Scheffler, B. E., Rutter, W. B., & Hulse-Kemp, A. M. (2023). Representing true plant genomes: haplotype-resolved hybrid pepper genome with trio-binning. FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1184112

Wu, X., Simpson, S. A., Youngblood, R. C., Liu, X. F., Scheffler, B. E., Rinehart, T. A., … Hulse-Kemp, A. M. (2023). Two haplotype-resolved genomes reveal important flower traits in bigleaf hydrangea (Hydrangea macrophylla) and insights into Asterid evolution. HORTICULTURE RESEARCH, 10(12). https://doi.org/10.1093/hr/uhad217

Kloppe, T., Whetten, R. B., Kim, S. B., Powell, O. R., Lück, S., Douchkov, D., … Cowger, C. (2023). Two pathogen loci determine <i>Blumeria graminis. New Phytologist, 238(4), 1546–1561. https://doi.org/10.1111/nph.18809

Chang, J., Marczuk-Rojas, J. P., Waterman, C., Garcia-Llanos, A., Chen, S., Ma, X., … Carretero-Paulet, L. (2022, July 27). Chromosome-scale assembly of the Moringa oleifera Lam. genome uncovers polyploid history and evolution of secondary metabolism pathways through tandem duplication. PLANT GENOME, Vol. 7. https://doi.org/10.1002/tpg2.20238

Graham, B. P., Park, J., Billings, G. T., Hulse-Kemp, A. M., Haigler, C. H., & Lobaton, E. (2022, November 26). Efficient imaging and computer vision detection of two cell shapes in young cotton fibers. APPLICATIONS IN PLANT SCIENCES, Vol. 11. https://doi.org/10.1002/aps3.11503

Yu, S., Schoonmaker, A. N., Yan, L., Hulse-Kemp, A. M., Fontanier, C. H., Martin, D. L., … Wu, Y. Q. (2022, October 26). Genetic variability and QTL mapping of winter survivability and leaf firing in African bermudagrass. CROP SCIENCE, Vol. 10. https://doi.org/10.1002/csc2.20849

Vaughn, J. N., Branham, S. E., Abernathy, B., Hulse-Kemp, A. M., Rivers, A. R., Levi, A., & Wechter, W. P. (2022). Graph-based pangenomics maximizes genotyping density and reveals structural impacts on fungal resistance in melon. NATURE COMMUNICATIONS, 13(1). https://doi.org/10.1038/s41467-022-35621-7

Restrepo-Montoya, D., Hulse-Kemp, A. M., Scheffler, J. A., Haigler, C. H., Hinze, L. L., Love, J., … Frelichowski, J. (2022). Leveraging National Germplasm Collections to Determine Significantly Associated Categorical Traits in Crops: Upland and Pima Cotton as a Case Study. FRONTIERS IN PLANT SCIENCE, 13. https://doi.org/10.3389/fpls.2022.837038

Redpath, L. E., Aryal, R., Lynch, N., Spencer, J. A., Hulse-Kemp, A. M., Ballington, J. R., … Ashrafi, H. (2022). Nuclear DNA contents and ploidy levels of North American Vaccinium species and interspecific hybrids. SCIENTIA HORTICULTURAE, 297. https://doi.org/10.1016/j.scienta.2022.110955

Billings, G. T., Jones, M. A., Rustgi, S., Bridges, W. C., Holland, J. B., Hulse-Kemp, A. M., & Campbell, B. T. (2022). Outlook for Implementation of Genomics-Based Selection in Public Cotton Breeding Programs. PLANTS-BASEL, 11(11). https://doi.org/10.3390/plants11111446

Edger, P. P., Iorizzo, M., Bassil, N. V., Benevenuto, J., Ferrao, L. F. V., Giongo, L., … Zalapa, J. (2022). There and back again; historical perspective and future directions for Vaccinium breeding and research studies. HORTICULTURE RESEARCH, 9. https://doi.org/10.1093/hr/uhac083

Hulse-Kemp, A. M., Bostan, H., Chen, S., Ashrafi, H., Stoffel, K., Sanseverino, W., … Van Deynze, A. (2021, June 10). An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids. PLANT GENOME, Vol. 6. https://doi.org/10.1002/tpg2.20101

Wu, X., Hulse-Kemp, A. M., Wadl, P. A., Smith, Z., Mockaitis, K., Staton, M. E., … Alexander, L. W. (2021). Genomic Resource Development for Hydrangea (Hydrangea macrophylla (Thunb.) Ser.)-A Transcriptome Assembly and a High-Density Genetic Linkage Map. HORTICULTURAE, 7(2). https://doi.org/10.3390/horticulturae7020025

Yu, J., Hulse-Kemp, A. M., Babiker, E., & Staton, M. (2021). High-quality reference genome and annotation aids understanding of berry development for evergreen blueberry (Vaccinium darrowii). HORTICULTURE RESEARCH, 8(1). https://doi.org/10.1038/s41438-021-00641-9

Billings, G. T., Jones, M. A., Rustgi, S., Hulse-Kemp, A. M., & Campbell, B. T. (2021). Population structure and genetic diversity of the Pee Dee cotton breeding program. G3-GENES GENOMES GENETICS, 11(7). https://doi.org/10.1093/g3journal/jkab145

Ulloa, M., De Santiago, L. M., Hulse-Kemp, A. M., Stelly, D. M., & Burke, J. J. (2020). Enhancing Upland cotton for drought resilience, productivity, and fiber quality: comparative evaluation and genetic dissection. MOLECULAR GENETICS AND GENOMICS, 295(1), 155–176. https://doi.org/10.1007/s00438-019-01611-6

Jarret, R. L., Barboza, G. E., Costa Batista, F. R., Berke, T., Chou, Y.-Y., Hulse-Kemp, A., … Szoke, A. (2019). Capsicum-An Abbreviated Compendium. JOURNAL OF THE AMERICAN SOCIETY FOR HORTICULTURAL SCIENCE, 144(1), 3–22. https://doi.org/10.21273/JASHS04446-18

Toomer, O. T., Hulse-Kemp, A. M., Dean, L. L., Boykin, D. L., Malheiros, R., & Anderson, K. E. (2019). Feeding high-oleic peanuts to layer hens enhances egg yolk color and oleic fatty acid content in shell eggs. Poultry Science, 98(4), 1732–1748. https://doi.org/10.3382/ps/pey531

Gonda, I., Ashrafi, H., Lyon, D. A., Strickler, S. R., Hulse-Kemp, A. M., Ma, Q., … Foolad, M. R. (2019). Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection. PLANT GENOME, 12(1). https://doi.org/10.3835/plantgenome2018.02.0010

Hulse-Kemp, A. M., Maheshwari, S., Stoffel, K., Hill, T. A., Jaffe, D., Williams, S. R., … Van Deynze, A. (2018). Reference quality assembly of the 3.5-Gb genome of Capsicum annuum from a single linked-read library. HORTICULTURE RESEARCH, 5. https://doi.org/10.1038/s41438-017-0011-0

Hinze, L. L., Hulse-Kemp, A. M., Wilson, I. W., Zhu, Q. H., Llewellyn, D. J., Taylor, J. M., … Stelly, D. M. (2017). Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array. BMC Plant Biology, 17(1), 37, https://doi.org/10.1186/s12870-017-0981-y

Hulse-Kemp, A. M., Maheshwari, S., Stoffel, K., Hill, T. A., Jaffe, D., Williams, S., … Deynze, A. V. (2017, June 20). Reference Quality Assembly of the 3.5 Gb genome of Capsicum annuum from a Single Linked-Read Library (Vol. 6). Vol. 6. https://doi.org/10.1101/152777

Hulse-Kemp, A. M., Ashrafi, H., Plieske, J., Lemm, J., Stoffel, K., Hill, T., … Van Deynze, A. (2016). A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding. HORTICULTURE RESEARCH, 3(1). https://doi.org/10.1038/hortres.2016.36

Page, J. T., Liechty, Z. S., Alexander, R. H., Clemons, K., Hulse-Kemp, A. M., Ashrafi, H., … Udall, J. A. (2016). Correction: DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton. PLoS Genetics, 12(7), 1006206, https://doi.org/10.1371/journal.pgen.1006206

Page, J. T., Liechty, Z. S., Alexander, R. H., Clemons, K., Hulse-Kemp, A. M., Ashrafi, H., … Udall, J. A. (2016). DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton. PLOS GENETICS, 12(5). https://doi.org/10.1371/journal.pgen.1006012

Hulse-Kemp, A. M., Ashrafi, H., Stoffel, K., Zheng, X., Saski, C. A., Scheffler, B. E., … G3. (2015). BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping. G3#58; Genes|Genomes|Genetics, 5(6), 1095–1105. https://doi.org/10.1534/g3.115.017749

Hulse-Kemp, A. M., Lemm, J., Plieske, J., Ashrafi, H., Buyyarapu, R., Fang, D. D., … Stelly, D. M. (2015). Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp. 5(6), 1187–1209, https://doi.org/10.1534/g3.115.018416

Zhang, T., Hu, Y., Jiang, W., Fang, L., Guan, X., Chen, J., … Chen, Z. J. (2015). Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement. Nature Biotechnology, 33(5), 531–537, https://doi.org/10.1038/nbt.3207

Hulse-Kemp, A. M., Ashrafi, H., Zheng, X., Wang, F., Hoegenauer, K. A., Maeda, A. B., … Stelly, D. M. (2014). Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts. BMC Genomics, 15(1), 945. https://doi.org/10.1186/1471-2164-15-945

Hulse, A. M., & Cai, J. J. (2013). Genetic Variants Contribute to Gene Expression Variability in Humans. Genetics, 193(1), 95–108. https://doi.org/10.1534/genetics.112.146779

Gomez-Raya, L., Hulse, A. M., Thain, D., & Rauw, W. M. (2013). Haplotype phasing after joint estimation of recombination and linkage disequilibrium in breeding populations. J Anim Sci Biotechnol, 4(1), 30. https://doi.org/10.1186/2049-1891-4-30

Page, J. T., Huynh, M. D., Liechty, Z. S., Grupp, K., Stelly, D., Hulse, A. M., … Udall, J. A. (2013). Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing. G3#58; Genes|Genomes|Genetics, 3(10), 1809–1818. https://doi.org/10.1534/g3.113.007229

Cai, Yang, E., Hulse, A. M., & Cai. (2012). Evolutionary Analysis of Sequence Divergence and Diversity of Duplicate Genes in Aspergillus fumigatus. EBO, 11, 623. https://doi.org/10.4137/ebo.s10372