@article{davis_wiegers_johnson_sciaky_wiegers_mattingly_2022, title={Comparative Toxicogenomics Database (CTD): update 2023}, volume={9}, ISSN={["1362-4962"]}, DOI={10.1093/nar/gkac833}, journal={NUCLEIC ACIDS RESEARCH}, author={Davis, Allan Peter and Wiegers, Thomas C. and Johnson, Robin J. and Sciaky, Daniela and Wiegers, Jolene and Mattingly, Carolyn J.}, year={2022}, month={Sep} } @article{davis_wiegers_wiegers_grondin_johnson_sciaky_mattingly_2021, title={CTD anatomy: Analyzing chemical-induced phenotypes and exposures from an anatomical perspective, with implications for environmental health studies}, volume={2}, ISSN={["2666-027X"]}, DOI={10.1016/j.crtox.2021.03.001}, journal={CURRENT RESEARCH IN TOXICOLOGY}, author={Davis, Allan Peter and Wiegers, Thomas C. and Wiegers, Jolene and Grondin, Cynthia J. and Johnson, Robin J. and Sciaky, Daniela and Mattingly, Carolyn J.}, year={2021}, pages={128–139} } @article{davis_grondin_johnson_sciaky_wiegers_wiegers_mattingly_2021, title={Comparative Toxicogenomics Database (CTD): update 2021}, volume={49}, ISSN={["1362-4962"]}, DOI={10.1093/nar/gkaa891}, number={D1}, journal={NUCLEIC ACIDS RESEARCH}, author={Davis, Allan Peter and Grondin, Cynthia J. and Johnson, Robin J. and Sciaky, Daniela and Wiegers, Jolene and Wiegers, Thomas C. and Mattingly, Carolyn J.}, year={2021}, month={Jan}, pages={D1138–D1143} } @article{grondin_davis_wiegers_wiegers_sciaky_johnson_mattingly_2021, title={Predicting molecular mechanisms, pathways, and health outcomes induced by Juul e-cigarette aerosol chemicals using the Comparative Toxicogenomics Database}, volume={2}, ISSN={["2666-027X"]}, DOI={10.1016/j.crtox.2021.08.001}, journal={CURRENT RESEARCH IN TOXICOLOGY}, author={Grondin, Cynthia J. and Davis, Allan Peter and Wiegers, Jolene A. and Wiegers, Thomas C. and Sciaky, Daniela and Johnson, Robin J. and Mattingly, Carolyn J.}, year={2021}, pages={272–281} } @article{pinkhasova_jameson_conrow_simeone_davis_wiegers_mattingly_leung_2021, title={Regulatory status of pesticide residues in cannabis: Implications to medical use in neurological diseases}, volume={2}, ISSN={["2666-027X"]}, DOI={10.1016/j.crtox.2021.02.007}, journal={CURRENT RESEARCH IN TOXICOLOGY}, author={Pinkhasova, Dorina V. and Jameson, Laura E. and Conrow, Kendra D. and Simeone, Michael P. and Davis, Allan Peter and Wiegers, Thomas C. and Mattingly, Carolyn J. and Leung, Maxwell C. K.}, year={2021}, pages={140–148} } @article{davis_wiegers_grondin_johnson_sciaky_wiegers_mattingly_2020, title={Leveraging the Comparative Toxicogenomics Database to Fill in Knowledge Gaps for Environmental Health: A Test Case for Air Pollution-induced Cardiovascular Disease}, volume={177}, ISSN={["1096-0929"]}, DOI={10.1093/toxsci/kfaa113}, number={2}, journal={TOXICOLOGICAL SCIENCES}, author={Davis, Allan Peter and Wiegers, Thomas C. and Grondin, Cynthia J. and Johnson, Robin J. and Sciaky, Daniela and Wiegers, Jolene and Mattingly, Carolyn J.}, year={2020}, month={Oct}, pages={392–404} } @article{davis_grondin_johnson_sciaky_mcmorran_wiegers_wiegers_mattingly_2019, title={The Comparative Toxicogenomics Database: update 2019}, volume={47}, ISSN={["1362-4962"]}, DOI={10.1093/nar/gky868}, number={D1}, journal={NUCLEIC ACIDS RESEARCH}, author={Davis, Allan Peter and Grondin, Cynthia J. and Johnson, Robin J. and Sciaky, Daniela and McMorran, Roy and Wiegers, Jolene and Wiegers, Thomas C. and Mattingly, Carolyn J.}, year={2019}, month={Jan}, pages={D948–D954} } @article{grondin_davis_wiegers_wiegers_mattingly_2018, title={Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database}, volume={126}, ISSN={["1552-9924"]}, DOI={10.1289/ehp2873}, number={1}, journal={ENVIRONMENTAL HEALTH PERSPECTIVES}, author={Grondin, Cynthia J. and Davis, Allan Peter and Wiegers, Thomas C. and Wiegers, Jolene A. and Mattingly, Carolyn J.}, year={2018}, month={Jan} } @article{davis_wiegers_wiegers_johnson_sciaky_grondin_mattingly_2018, title={Chemical-Induced Phenotypes at CTD Help Inform the Predisease State and Construct Adverse Outcome Pathways}, volume={165}, ISSN={["1096-0929"]}, DOI={10.1093/toxsci/kfy131}, number={1}, journal={TOXICOLOGICAL SCIENCES}, author={Davis, Allan Peter and Wiegers, Thomas C. and Wiegers, Jolene and Johnson, Robin J. and Sciaky, Daniela and Grondin, Cynthia J. and Mattingly, Carolyn J.}, year={2018}, month={Sep}, pages={145–156} } @article{davis_grondin_johnson_sciaky_king_mcmorran_wiegers_wiegers_mattingly_2017, title={The Comparative Toxicogenomics Database: update 2017}, volume={45}, ISSN={["1362-4962"]}, DOI={10.1093/nar/gkw838}, number={D1}, journal={NUCLEIC ACIDS RESEARCH}, author={Davis, Allan Peter and Grondin, Cynthia J. and Johnson, Robin J. and Sciaky, Daniela and King, Benjamin L. and McMorran, Roy and Wiegers, Jolene and Wiegers, Thomas C. and Mattingly, Carolyn J.}, year={2017}, month={Jan}, pages={D972–D978} } @article{grondin_davis_wiegers_king_wiegers_reif_hoppin_mattingly_2016, title={Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database}, volume={124}, ISSN={0091-6765 1552-9924}, url={http://dx.doi.org/10.1289/EHP174}, DOI={10.1289/ehp174}, number={10}, journal={Environmental Health Perspectives}, publisher={Environmental Health Perspectives}, author={Grondin, Cynthia J. and Davis, Allan Peter and Wiegers, Thomas C. and King, Benjamin L. and Wiegers, Jolene A. and Reif, David M. and Hoppin, Jane A. and Mattingly, Carolyn J.}, year={2016}, month={Oct}, pages={1592–1599} } @article{wei_peng_leaman_davis_mattingly_li_wiegers_lu_2016, title={Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task}, ISSN={["1758-0463"]}, DOI={10.1093/database/baw032}, journal={DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION}, author={Wei, Chih-Hsuan and Peng, Yifan and Leaman, Robert and Davis, Allan Peter and Mattingly, Carolyn J. and Li, Jiao and Wiegers, Thomas C. and Lu, Zhiyong}, year={2016}, month={Mar} } @article{li_sun_johnson_sciaky_wei_leaman_davis_mattingly_wiegers_lu_et al._2016, title={BioCreative V CDR task corpus: a resource for chemical disease relation extraction}, ISSN={["1758-0463"]}, DOI={10.1093/database/baw068}, journal={DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION}, author={Li, J. and Sun, Y. P. and Johnson, R. J. and Sciaky, D. and Wei, C. H. and Leaman, R. and Davis, A. P. and Mattingly, Carolyn and Wiegers, T. C. and Lu, Z. Y. and et al.}, year={2016}, month={May} } @article{davis_wiegers_king_wiegers_grondin_sciaky_johnson_mattingly_2016, title={Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database}, volume={11}, ISSN={["1932-6203"]}, DOI={10.1371/journal.pone.0155530}, number={5}, journal={PLOS ONE}, author={Davis, Allan Peter and Wiegers, Thomas C. and King, Benjamin L. and Wiegers, Jolene and Grondin, Cynthia J. and Sciaky, Daniela and Johnson, Robin J. and Mattingly, Carolyn J.}, year={2016}, month={May} } @article{davis_grondin_lennon-hopkins_saraceni-richards_sciaky_king_wiegers_mattingly_2015, title={The Comparative Toxicogenomics Database's 10th year anniversary: update 2015}, volume={43}, ISSN={["1362-4962"]}, DOI={10.1093/nar/gku935}, number={D1}, journal={NUCLEIC ACIDS RESEARCH}, author={Davis, Allan Peter and Grondin, Cynthia J. and Lennon-Hopkins, Kelley and Saraceni-Richards, Cynthia and Sciaky, Daniela and King, Benjamin L. and Wiegers, Thomas C. and Mattingly, Carolyn J.}, year={2015}, month={Jan}, pages={D914–D920} } @article{wiegers_davis_mattingly_2014, title={Web services-based text-mining demonstrates broad impacts for interoperability and process simplification}, ISSN={["1758-0463"]}, DOI={10.1093/database/bau050}, journal={DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION}, author={Wiegers, Thomas C. and Davis, Allan Peter and Mattingly, Carolyn J.}, year={2014}, month={Jun} } @article{davis_wiegers_roberts_king_lay_lennon-hopkins_sciaky_johnson_keating_greene_et al._2013, title={A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions}, ISSN={["1758-0463"]}, DOI={10.1093/database/bat080}, journal={DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION}, author={Davis, Allan Peter and Wiegers, Thomas C. and Roberts, Phoebe M. and King, Benjamin L. and Lay, Jean M. and Lennon-Hopkins, Kelley and Sciaky, Daniela and Johnson, Robin and Keating, Heather and Greene, Nigel and et al.}, year={2013}, month={Nov} } @article{davis_wiegers_johnson_lay_lennon-hopkins_saraceni-richards_sciaky_murphy_mattingly_2013, title={Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database}, volume={8}, ISSN={["1932-6203"]}, DOI={10.1371/journal.pone.0058201}, number={4}, journal={PLOS ONE}, author={Davis, Allan Peter and Wiegers, Thomas C. and Johnson, Robin J. and Lay, Jean M. and Lennon-Hopkins, Kelley and Saraceni-Richards, Cynthia and Sciaky, Daniela and Murphy, Cynthia Grondin and Mattingly, Carolyn J.}, year={2013}, month={Apr} } @article{king_davis_rosenstein_wiegers_mattingly_2012, title={Ranking Transitive Chemical-Disease Inferences Using Local Network Topology in the Comparative Toxicogenomics Database}, volume={7}, ISSN={["1932-6203"]}, DOI={10.1371/journal.pone.0046524}, number={11}, journal={PLOS ONE}, author={King, Benjamin L. and Davis, Allan Peter and Rosenstein, Michael C. and Wiegers, Thomas C. and Mattingly, Carolyn J.}, year={2012}, month={Nov} } @article{davis_johnson_lennon-hopkins_sciaky_rosenstein_wiegers_mattingly_2012, title={Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database}, journal={Database-The Journal of Biological Databases and Curation}, author={Davis, A. P. and Johnson, R. J. and Lennon-Hopkins, K. and Sciaky, D. and Rosenstein, M. C. and Wiegers, T. C. and Mattingly, C. J.}, year={2012} } @article{davis_murphy_johnson_lay_lennon-hopkins_saraceni-richards_sciaky_king_rosenstein_wiegers_et al._2012, title={The Comparative Toxicogenomics Database: update 2013}, volume={41}, ISSN={0305-1048 1362-4962}, url={http://dx.doi.org/10.1093/nar/gks994}, DOI={10.1093/nar/gks994}, number={D1}, journal={Nucleic Acids Research}, publisher={Oxford University Press (OUP)}, author={Davis, Allan Peter and Murphy, Cynthia Grondin and Johnson, Robin and Lay, Jean M. and Lennon-Hopkins, Kelley and Saraceni-Richards, Cynthia and Sciaky, Daniela and King, Benjamin L. and Rosenstein, Michael C. and Wiegers, Thomas C. and et al.}, year={2012}, month={Oct}, pages={D1104–D1114} }