Anna N. Stepanova

Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 68.

To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses

PLANTS-BASEL, 11(1).

Auxin Interactions with Other Hormones in Plant Development

Cold Spring Harbor Perspectives in Biology, 13(10), a039990.

Broadening the impact of plant science through innovative, integrative, and inclusive outreach

PLANT DIRECT, 5(4).

Editorial overview: Toward deciphering the molecular basis of plant phenotypic plasticity

Qiao, H., & Stepanova, A. N. (2021, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 63.

Leveraging synthetic biology approaches in plant hormone research

Current Opinion in Plant Biology.

Leveraging synthetic biology approaches in plant hormone research

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 60.

Plant Biology Research: What Is Next?

Stepanova, A. N. (2021, September 30). FRONTIERS IN PLANT SCIENCE, Vol. 12.

An Improved Recombineering Toolset for Plants

The Plant Cell.

Development of a relative quantification method for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 34(6).

Monitoring Ethylene in Plants: Genetically Encoded Reporters and Biosensors

Small Methods, 4(8), 1900260.

Structure–Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes

Plant Physiology, 183(3), 1110–1125.

An improved plant toolset for high-throughput recombineering

Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2019, June 3). (Vol. 6). Vol. 6.

Epigenetic silencing of a multifunctional plant stress regulator

ELIFE, 8.

From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration

Stepanova, A. N., & Alonso, J. M. (2019, July). PLANT CELL, Vol. 31, pp. 1393–1394.

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

Perkins, P., Mazzoni-Putman, S., Stepanova, A., Alonso, J., & Heber, S. (2019, June 6). BMC GENOMICS, Vol. 20.

A Plant Biologist's Toolbox to Study Translation

[Review of ]. FRONTIERS IN PLANT SCIENCE, 9.

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1).

Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1), 1818.

Local Auxin Biosynthesis Is a Key Regulator of Plant Development

DEVELOPMENTAL CELL, 47(3), 306-+.

Editorial: Relevance of translational regulation on plant growth and environmental responses

Frontiers in Plant Science, 8.

The triple response assay and its use to characterize ethylene mutants in Arabidopsis

Ethylene Signaling: Methods and Protocols, 1573, 163–209.

The triple response assay and its use to characterize ethylene mutants in arabidopsis

In Methods in Molecular Biology (Vol. 1573, pp. 163–209).

Translation regulation in plants: an interesting past, an exciting present and a promising future

PLANT JOURNAL, 90(4), 628–653.

Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis

Stepanova, A. N., & Alonso, J. M. (2016, September 27). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 113, pp. 10742–10744.

Cutting Out the Middle Man in Light-Hormone Interactions

Stepanova, A. N., & Alonso, J. M. (2016, December 5). DEVELOPMENTAL CELL, Vol. 39, pp. 524–526.

Genome-Wide Search for Translated Upstream Open Reading Frames in Arabidopsis Thaliana

IEEE Transactions on Nanobioscience, 15(2), 150–159.

Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain

PLANT PHYSIOLOGY, 171(1), 42–61.

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana

In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).

A recombineering-based gene tagging system for Arabidopsis

Methods in Molecular Biology (Clifton, N.J.), 1227, 233–243.

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

Bioinformatics research and applications (isbra 2015), 9096, 138–149.

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

CELL, 163(3), 684–697.

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015.

Plant functional genomics methods and protocols second edition preface

Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.

Plant functional genomics: Methods and protocols

In J. M. Alonso & A. N. Stepanova (Eds.), Plant Functional Genomics: Methods and Protocols: Second Edition (2nd ed., pp. 1–526).

A recombineering-based gene tagging system for Arabidopsis

In Bacterial Artificial Chromosomes: Second Edition (pp. 233–243).

Arabidopsis transformation with large bacterial artificial chromosomes

In Methods in Molecular Biology (Vol. 1062, pp. 271–283).

Genetic aspects of auxin biosynthesis and its regulation

PHYSIOLOGIA PLANTARUM, 151(1), 3–12.

Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity

NATURE COMMUNICATIONS, 4.

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants

2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.

Ethylene signaling: simple ligand, complex regulation

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 16(5), 554–560.

Kinetic analysis of Arabidopsis glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition

BIOCHEMICAL JOURNAL, 450(1), 37–46.

Local Auxin Sources Orient the Apical-Basal Axis in Arabidopsis Embryos

CURRENT BIOLOGY, 23(24), 2506–2512.

Molecular Mechanisms of EthyleneAuxin Interaction

MOLECULAR PLANT, 6(6), 1734–1737.

A Small-Molecule Screen Identifies l-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis

The Plant Cell, 23(11), 3944–3960.

A recombineering-based gene tagging system for Arabidopsis

PLANT JOURNAL, 66(4), 712–723.

Bypassing Transcription: A Shortcut in Cytokinin-Auxin Interactions

Stepanova, A. N., & Alonso, J. M. (2011, October 18). DEVELOPMENTAL CELL, Vol. 21, pp. 608–610.

The Arabidopsis YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis

PLANT CELL, 23(11), 3961–3973.

Ethylene signaling and response: where different regulatory modules meet

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 12(5), 548–555.

Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis

NATURE CELL BIOLOGY, 11(6), 731–U70.

TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development

Cell, 133(1), 177–191.

Multilevel interactions between ethylene and auxin in Arabidopsis roots

PLANT CELL, 19(7), 2169–2185.

PCR-based screening for insertional mutants.

Methods in Molecular Biology (Clifton, N.J.), 323, 163–172. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745265233&partnerID=MN8TOARS

A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis

PLANT CELL, 17(8), 2230–2242.

Arabidopsis ethylene signaling pathway.

Science's STKE : Signal Transduction Knowledge Environment, 2005(276). http://www.scopus.com/inward/record.url?eid=2-s2.0-33644876995&partnerID=MN8TOARS

Ethylene signaling pathway.

Science's STKE : Signal Transduction Knowledge Environment, 2005(276). http://www.scopus.com/inward/record.url?eid=2-s2.0-33644877967&partnerID=MN8TOARS

Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

Convergence of signaling pathways in the control of differential cell growth in Arabidopsis

Developmental Cell, 7(2), 193–204.

Short-term growth responses to ethylene in arabidopsis seedlings are EIN3/EIL1 independent

PLANT PHYSIOLOGY, 136(2), 2921–2927.

The ethylene signaling pathway

SCIENCE, 306(5701), 1513–1515.

Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis

Proceedings of the National Academy of Sciences of the United States of America, 100(5), 2992–2997.

Genome-wide insertional mutagenesis of Arabidopsis thaliana

Science, 301(5633), 653–657.

T-DNA mutagenesis in Arabidopsis

In Plant functional genomics.

T-DNA mutagenesis in Arabidopsis.

Methods in Molecular Biology (Clifton, N.J.), 236, 177–188. http://www.scopus.com/inward/record.url?eid=2-s2.0-1542548233&partnerID=MN8TOARS

Ethylene signaling: From mutants to molecules

Current Opinion in Plant Biology, 3(5), 353–360.

Nuclear events in ethylene signaling: A transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1

Genes and Development, 12(23), 3703–3714.