2024 article
A rapid and scalable approach to build synthetic repetitive hormone-responsive promoters
Fernandez-Moreno, J.-P., Yaschenko, A. E., Neubauer, M., Marchi, A. J., Zhao, C., Ascencio-Ibanez, J. T., … Stepanova, A. N. (2024, February 21). PLANT BIOTECHNOLOGY JOURNAL, Vol. 2.
2024 article
Arabidopsis as a model for translational research
Yaschenko, A. E., Alonso, J. M., & Stepanova, A. N. (2024, February 27). PLANT CELL, Vol. 2.
2024 article
Development of modular geminivirus-based vectors for high cargo expression and gene targeting in plants
Neubauer, M., Vollen, K., Ascencio-Ibanez, J. T., Hanley-Bowdoin, L., Stepanova, A. N., & Alonso, J. M. (2024, June 29).
2024 review
Sourcing DNA parts for synthetic biology applications in plants
[Review of ]. CURRENT OPINION IN BIOTECHNOLOGY, 87.
2022 review
Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 68.
2021 journal article
Auxin Interactions with Other Hormones in Plant Development
Cold Spring Harbor Perspectives in Biology, 13(10), a039990.
2021 journal article
Broadening the impact of plant science through innovative, integrative, and inclusive outreach
PLANT DIRECT, 5(4).
2021 article
Editorial overview: Toward deciphering the molecular basis of plant phenotypic plasticity
Qiao, H., & Stepanova, A. N. (2021, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 63.
2021 journal article
Leveraging synthetic biology approaches in plant hormone research
Current Opinion in Plant Biology.
2021 review
Leveraging synthetic biology approaches in plant hormone research
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 60.
2021 article
Plant Biology Research: What Is Next?
Stepanova, A. N. (2021, September 30). FRONTIERS IN PLANT SCIENCE, Vol. 12.
2021 journal article
To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses
PLANTS-BASEL, 11(1).
2020 journal article
Structure–Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes
Plant Physiology, 183(3), 1110–1125.
2019 journal article
An Improved Recombineering Toolset for Plants
The Plant Cell.
2019 article
An improved plant toolset for high-throughput recombineering
Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2019, June 3). (Vol. 6). Vol. 6.
2019 journal article
Development of a relative quantification method for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 34(6).
2019 journal article
Epigenetic silencing of a multifunctional plant stress regulator
ELIFE, 8.
2019 article
From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration
Stepanova, A. N., & Alonso, J. M. (2019, July). PLANT CELL, Vol. 31, pp. 1393–1394.
2019 journal article
Monitoring Ethylene in Plants: Genetically Encoded Reporters and Biosensors
Small Methods.
2019 article
RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data
Perkins, P., Mazzoni-Putman, S., Stepanova, A., Alonso, J., & Heber, S. (2019, June 6). BMC GENOMICS, Vol. 20.
2018 review
A Plant Biologist's Toolbox to Study Translation
[Review of ]. FRONTIERS IN PLANT SCIENCE, 9.
2018 journal article
A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate
Nature Communications, 9(1).
Contributors: R. Bhosale *, J. Giri *, B. Pandey *, R. Giehl *, A. Hartmann *, R. Traini*, J. Truskina *, N. Leftley *
2018 journal article
Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate
Nature Communications, 9(1), 1818.
Contributors: R. Bhosale *, J. Giri *, B. Pandey *, R. Giehl *, A. Hartmann *, R. Traini*, J. Truskina *, N. Leftley *
2018 journal article
Local Auxin Biosynthesis Is a Key Regulator of Plant Development
DEVELOPMENTAL CELL, 47(3), 306-+.
Contributors: J. Brumos n, L. Robles n, J. Yun n, T. Vu n, S. Jackson n, J. Alonso n, n
2017 journal article
Editorial: Relevance of translational regulation on plant growth and environmental responses
Frontiers in Plant Science, 8.
Contributors: A. Ferrando *, M. Castellano *, P. Lisón *, D. Leister *, n & J. Hanson *
2017 journal article
The triple response assay and its use to characterize ethylene mutants in Arabidopsis
Ethylene Signaling: Methods and Protocols, 1573, 163–209.
2017 chapter
The triple response assay and its use to characterize ethylene mutants in arabidopsis
In Methods in Molecular Biology (Vol. 1573, pp. 163–209).
Contributors: C. Merchante * & n
2017 journal article
Translation regulation in plants: an interesting past, an exciting present and a promising future
PLANT JOURNAL, 90(4), 628–653.
Contributors: C. Merchante *, n & J. Alonso n
2016 article
Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis
Stepanova, A. N., & Alonso, J. M. (2016, September 27). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 113, pp. 10742–10744.
Contributors: & J. Alonso n n
2016 article
Cutting Out the Middle Man in Light-Hormone Interactions
Stepanova, A. N., & Alonso, J. M. (2016, December 5). DEVELOPMENTAL CELL, Vol. 39, pp. 524–526.
Contributors: & J. Alonso n n
2016 journal article
Genome-Wide Search for Translated Upstream Open Reading Frames in Arabidopsis Thaliana
IEEE Transactions on Nanobioscience, 15(2), 150–159.
Contributors: Q. Hu n, C. Merchante *, n , J. Alonso n & S. Heber n
2016 journal article
Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain
PLANT PHYSIOLOGY, 171(1), 42–61.
Contributors: G. Villarino n, Q. Hu n, S. Manrique *, M. Flores-Vergara n, B. Sehra n, L. Robles n, J. Brumos n, n
2015 chapter
A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana
In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).
Contributors: Q. Hu n, C. Merchante n, n , J. Alonso n & S. Heber n
2015 conference paper
A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana
Bioinformatics research and applications (isbra 2015), 9096, 138–149.
2015 journal article
Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2
CELL, 163(3), 684–697.
Contributors: C. Merchante n, J. Brumos n, J. Yun n, Q. Hu n, K. Spencer n, P. Enríquez n, B. Binder *, S. Heber n , n , J. Alonso n
2015 conference paper
Mining transcript features related to translation in Arabidopsis using LASSO and random forest
2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015.
Contributors: Q. Hu n, C. Merchante n, n , J. Alonso n & S. Heber n
2015 journal article
Plant functional genomics methods and protocols second edition preface
Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.
2015 book
Plant functional genomics: Methods and protocols
In J. M. Alonso & A. N. Stepanova (Eds.), Plant Functional Genomics: Methods and Protocols: Second Edition (2nd ed., pp. 1–526).
Contributors: J. Alonso n & n
Ed(s): J. Alonso n & n
2014 journal article
A recombineering-based gene tagging system for Arabidopsis
Methods in Molecular Biology (Clifton, N.J.), 1227, 233–243.
Contributors: J. Alonso n & n
2013 journal article
Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity
NATURE COMMUNICATIONS, 4.
Contributors: S. Pietra *, A. Gustavsson*, C. Kiefer*, L. Kalmbach *, P. Hörstedt*, Y. Ikeda *, n , J. Alonso n, M. Grebe *
2013 book
Arabidopsis transformation with large bacterial artificial chromosomes
In Methods in Molecular Biology (Vol. 1062, pp. 271–283).
Contributors: J. Alonso n & n
2013 conference paper
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants
2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.
Contributors: K. Merchante n, Q. Hu n, n , J. Eonso & S. Heber n
2013 review
Ethylene signaling: simple ligand, complex regulation
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 16(5), 554–560.
Contributors: C. Merchante n, J. Alonso n & n
2013 journal article
Genetic aspects of auxin biosynthesis and its regulation
PHYSIOLOGIA PLANTARUM, 151(1), 3–12.
Contributors: J. Brumos n, J. Alonso n & n
2013 journal article
Local Auxin Sources Orient the Apical-Basal Axis in Arabidopsis Embryos
CURRENT BIOLOGY, 23(24), 2506–2512.
Contributors: H. Robert *, P. Grones *, n , L. Robles n, A. Lokerse*, J. Alonso n, D. Weijers *, J. Friml *
2013 journal article
Molecular Mechanisms of EthyleneAuxin Interaction
MOLECULAR PLANT, 6(6), 1734–1737.
Contributors: L. Robles n, n & J. Alonso n
2012 journal article
Kinetic analysis of Arabidopsis glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition
BIOCHEMICAL JOURNAL, 450(1), 37–46.
Contributors: J. Kopycki*, E. Wieduwild *, J. Kohlschmidt*, W. Brandt *, n , J. Alonso n, M. Pedras *, S. Abel *, C. Grubb*
2011 journal article
A Small-Molecule Screen Identifies l-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis
The Plant Cell, 23(11), 3944–3960.
2011 journal article
A recombineering-based gene tagging system for Arabidopsis
PLANT JOURNAL, 66(4), 712–723.
Contributors: R. Zhou n, L. Benavente n, n & J. Alonso n
2011 article
Bypassing Transcription: A Shortcut in Cytokinin-Auxin Interactions
Stepanova, A. N., & Alonso, J. M. (2011, October 18). DEVELOPMENTAL CELL, Vol. 21, pp. 608–610.
Contributors: & J. Alonso n n
2011 journal article
The Arabidopsis YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis
PLANT CELL, 23(11), 3961–3973.
Contributors: , J. Yun n, L. Robles n, O. Novak *, W. He *, H. Guo *, K. Ljung *, J. Alonso n n
2009 review
Ethylene signaling and response: where different regulatory modules meet
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 12(5), 548–555.
Contributors: & J. Alonso n n
2009 journal article
Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis
NATURE CELL BIOLOGY, 11(6), 731–U70.
Contributors: Y. Ikeda *, S. Men *, U. Fischer *, n , J. Alonso n, K. Ljung *, M. Grebe *
2008 journal article
TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development
Cell, 133(1), 177–191.
Contributors: , J. Robertson-Hoyt n, J. Yun n, L. Benavente n, D. Xie n , K. Doležal *, A. Schlereth*, G. Jürgens *, J. Alonso n n
2007 journal article
Multilevel interactions between ethylene and auxin in Arabidopsis roots
PLANT CELL, 19(7), 2169–2185.
Contributors: , J. Yun n, A. Likhacheva n & J. Alonso n n
2006 journal article
PCR-based screening for insertional mutants.
Methods in Molecular Biology (Clifton, N.J.), 323, 163–172. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745265233&partnerID=MN8TOARS
2005 journal article
A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis
PLANT CELL, 17(8), 2230–2242.
Contributors: , J. Hoyt n, A. Hamilton n & J. Alonso n n
2005 journal article
Arabidopsis ethylene signaling pathway.
Science's STKE : Signal Transduction Knowledge Environment, 2005(276). http://www.scopus.com/inward/record.url?eid=2-s2.0-33644876995&partnerID=MN8TOARS
2005 journal article
Ethylene signaling pathway.
Science's STKE : Signal Transduction Knowledge Environment, 2005(276). http://www.scopus.com/inward/record.url?eid=2-s2.0-33644877967&partnerID=MN8TOARS
2005 journal article
Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs
Physiologia Plantarum, 123(2), 195–206.
2005 journal article
Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs
Physiologia Plantarum, 123(2), 195–206.
Contributors: & J. Alonso n n
2004 journal article
Convergence of signaling pathways in the control of differential cell growth in Arabidopsis
Developmental Cell, 7(2), 193–204.
Contributors: H. Li *, P. Johnson*, * , J. Alonso * & J. Ecker *
2004 journal article
Short-term growth responses to ethylene in arabidopsis seedlings are EIN3/EIL1 independent
PLANT PHYSIOLOGY, 136(2), 2921–2927.
Contributors: B. Binder n, L. Mortimore n, n , J. Ecker n & A. Bleecker n
2004 journal article
2003 journal article
Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis
Proceedings of the National Academy of Sciences of the United States of America, 100(5), 2992–2997.
Contributors: J. Alonso *, * , R. Solano *, E. Wisman*, S. Ferrari *, F. Ausubel *, J. Ecker *
2003 journal article
Genome-wide insertional mutagenesis of Arabidopsis thaliana
Science, 301(5633), 653–657.
Contributors: J. Alonso *, * , T. Leisse*, C. Kim*, H. Chen *, P. Shinn*, D. Stevenson*, J. Zimmerman*
2003 chapter
T-DNA mutagenesis in Arabidopsis
In Plant functional genomics.
2003 journal article
T-DNA mutagenesis in Arabidopsis.
Methods in Molecular Biology (Clifton, N.J.), 236, 177–188. http://www.scopus.com/inward/record.url?eid=2-s2.0-1542548233&partnerID=MN8TOARS
2000 journal article
Ethylene signaling: From mutants to molecules
Current Opinion in Plant Biology, 3(5), 353–360.
Contributors: & J. Ecker * *
1998 journal article
Nuclear events in ethylene signaling: A transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1
Genes and Development, 12(23), 3703–3714.
Contributors: R. Solano *, * , Q. Chao* & J. Ecker *
Updated: June 3rd, 2019 15:48
2019 - present
2014 - 2019
2009 - 2013
2003 - 2009
2001 - 2003
Updated: October 11th, 2019 13:37
1995 - 2001
1993 - 1995
1990 - 1995
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