Anna N Stepanova

A rapid and scalable approach to build synthetic repetitive hormone‐responsive promoters

Plant Biotechnology Journal, 22(7), 1942–1956.

Arabidopsis as a model for translational research

The Plant Cell, 2.

Development of modular geminivirus-based vectors for high cargo expression and gene targeting in plants

Leveraging synthetic biology to monitor and control plant hormone activity

Syngenta Plant Expression Community Seminar Series. Presented at the Syngenta Plant Expression Community Seminar Series, Raleigh, NC.

Leveraging synthetic biology to monitor and control plant hormone activity

2024 Maize Genetics Meeting. Presented at the 2024 Maize Genetics Meeting, Raleigh, NC.

New gene stacking system compatible with all major Type IIS cloning technologies in plants

International Conference on Arabidopsis Research. Presented at the International Conference on Arabidopsis Research, San Diego, CA.

Sourcing DNA parts for synthetic biology applications in plants

Current Opinion in Biotechnology, 87, 103140.

Targeted DNA ADP-ribosylation triggers templated repair in bacteria and base mutagenesis in eukaryotes

Tracking plant hormones, Joseph Ecker 65th Birthday Symposium “From plants to brains and beyond

Salk Institute. Presented at the Salk Institute, La Jolla, CA.

Auxin biosynthesis: a geneticist’s perspective, American Society of Plant Biology

Mid-Atlantic Section and University of Maryland Plant Symposium. Presented at the Mid-Atlantic Section and University of Maryland Plant Symposium, College Park, MD.

Leveraging synthetic biology to monitor and control plant hormone activity

Plant and Microbial Biology Departmental Seminar Series. Presented at the Plant and Microbial Biology Departmental Seminar Series, NCSU, Raleigh, NC.

Leveraging synthetic biology to monitor and control plant hormone activity

24th International Conference on Plant Growth Substances. Presented at the 24th International Conference on Plant Growth Substances, Gyeongju, Korea.

Monitoring ethylene in plants using synthetic transcriptional reporters

XII International Symposium on the Plant Hormone Ethylene (Ethylene 2023). Presented at the XII International Symposium on the Plant Hormone Ethylene (Ethylene 2023), Toulouse, France.

Multi-Class Segmentation of Dark-Grown Arabidopsis Seedlings with U-Net

Tailoring hormone responses in plants via synthetic signal integration devices

NSF CAREER Awardee Meeting. Presented at the NSF CAREER Awardee Meeting, Alexandria, VA.

A Ribo-Seq Method to Study Genome-Wide Translational Regulation in Plants

Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?

Current Opinion in Plant Biology, 68, 102241.

Tailoring gene expression in plants using CRISPR-based logic gates

32nd International conference on Arabidopsis Research. Presented at the 32nd International conference on Arabidopsis Research, Belfast, UK.

Auxin Interactions with Other Hormones in Plant Development

Cold Spring Harbor Perspectives in Biology, 13(10), a039990.

Broadening the impact of plant science through innovative, integrative, and inclusive outreach

Plant Direct, 5(4).

Editorial overview: Toward deciphering the molecular basis of plant phenotypic plasticity

Current Opinion in Plant Biology, 63, 102107.

Leveraging synthetic biology approaches in plant hormone research

Current Opinion in Plant Biology, 60, 101998.

Leveraging synthetic biology approaches in plant hormone research

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 60.

Plant Biology Research: What Is Next?

Frontiers in Plant Science, 12.

Synthetic ethylene-responsive binding element and uses thereof

(U.S. Patent No. US20230235346A1).

To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses

Plants, 11(1), 33.

Vision, challenges and opportunities for a Plant Cell Atlas

ELife, 10.

An Improved Recombineering Toolset for Plants

ASPB PLANT BIOLOGY 2020. Presented at the ASPB PLANT BIOLOGY 2020.

RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data

(I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums, & A. Zelikovsky, Eds.).

Structure–Function Analysis of Interallelic Complementation in <i>ROOTY</i> Transheterozygotes

Plant Physiology, 183(3), 1110–1125.

crRNA:tracrRNA-based binary logic gate design as a tool for synthetic biology

(U.S. Patent No. US20230051466A1).

An Improved Recombineering Toolset for Plants

The Plant Cell, 32(1), 100–122.

An improved plant toolset for high-throughput recombineering

Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2019, June 3). (Vol. 6). Vol. 6.

Development of a relative quantification method for infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging of <i>Arabidopsis</i> seedlings

Rapid Communications in Mass Spectrometry, 34(6).

Epigenetic silencing of a multifunctional plant stress regulator

ELIFE, 8.

From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration

The Plant Cell, 31(7), 1393–1394.

Monitoring Ethylene in Plants: Genetically Encoded Reporters and Biosensors

Small Methods, 4(8).

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC Genomics, 20(S5).

A Plant Biologist’s Toolbox to Study Translation

Frontiers in Plant Science, 9.

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1).

Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1), 1818.

Local Auxin Biosynthesis Is a Key Regulator of Plant Development

Developmental Cell, 47(3), 306–318.e5.

Editorial: Relevance of Translational Regulation on Plant Growth and Environmental Responses

Frontiers in Plant Science, 8.

The Triple Response Assay and Its Use to Characterize Ethylene Mutants in Arabidopsis

The triple response assay and its use to characterize ethylene mutants in Arabidopsis

Ethylene Signaling: Methods and Protocols, 1573, 163–209.

Translation regulation in plants: an interesting past, an exciting present and a promising future

The Plant Journal, 90(4), 628–653.

A Ribosome Footprinting Protocol for Plants

BIO-PROTOCOL, 6(21).

Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis

Proceedings of the National Academy of Sciences, 113(39), 10742–10744.

Cutting Out the Middle Man in Light-Hormone Interactions

Developmental Cell, 39(5), 524–526.

Genome-Wide Search for Translated Upstream Open Reading Frames in Arabidopsis Thaliana

IEEE Transactions on NanoBioscience, 15(2), 148–157.

Transcriptomic Signature of the <i>SHATTERPROOF2</i> Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain

Plant Physiology, 171(1), 42–61.

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana

In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

Bioinformatics research and applications (isbra 2015), 9096, 138–149.

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

Cell, 163(3), 684–697.

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015.

Plant functional genomics methods and protocols second edition preface

Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.

Plant functional genomics: Methods and protocols

In J. M. Alonso & A. N. Stepanova (Eds.), Plant Functional Genomics: Methods and Protocols: Second Edition (2nd ed., pp. 1–526).

A Recombineering-Based Gene Tagging System for Arabidopsis

In K. Narayanan (Ed.), Bacterial Artificial Chromosomes (pp. 233–243).

Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity

Nature Communications, 4(1).

Arabidopsis Transformation with Large Bacterial Artificial Chromosomes

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants

2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.

Ethylene signaling: simple ligand, complex regulation

Current Opinion in Plant Biology, 16(5), 554–560.

Genetic aspects of auxin biosynthesis and its regulation

Physiologia Plantarum, 151(1), 3–12.

Local Auxin Sources Orient the Apical-Basal Axis in Arabidopsis Embryos

Current Biology, 23(24), 2506–2512.

Molecular Mechanisms of Ethylene–Auxin Interaction

Molecular Plant, 6(6), 1734–1737.

Kinetic analysis of <i>Arabidopsis</i> glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition

Biochemical Journal, 450(1), 37–46.

A Small-Molecule Screen Identifies<scp>l</scp>-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in <i>Arabidopsis</i>   

The Plant Cell, 23(11), 3944–3960.

A recombineering‐based gene tagging system for Arabidopsis

The Plant Journal, 66(4), 712–723.

Bypassing Transcription: A Shortcut in Cytokinin-Auxin Interactions

Developmental Cell, 21(4), 608–610.

The <i>Arabidopsis</i> YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis

The Plant Cell, 23(11), 3961–3973.

Ethylene signaling and response: where different regulatory modules meet

Current Opinion in Plant Biology, 12(5), 548–555.

Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis

Nature Cell Biology, 11(6), 731–738.

TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development

Cell, 133(1), 177–191.

Multilevel Interactions between Ethylene and Auxin in <i>Arabidopsis</i>Roots

The Plant Cell, 19(7), 2169–2185.

PCR-Based Screening for Insertional Mutants

PCR-based screening for insertional mutants.

Methods in Molecular Biology (Clifton, N.J.), 323, 163–172. http://www.scopus.com/inward/record.url?eid=2-s2.0-33745265233&partnerID=MN8TOARS

A Link between Ethylene and Auxin Uncovered by the Characterization of Two Root-Specific Ethylene-Insensitive Mutants in Arabidopsis

The Plant Cell, 17(8), 2230–2242.

Arabidopsis Ethylene Signaling Pathway

Science's STKE, 2005(276).

Arabidopsis ethylene signaling pathway.

Science's STKE : Signal Transduction Knowledge Environment, 2005(276). http://www.scopus.com/inward/record.url?eid=2-s2.0-33644876995&partnerID=MN8TOARS

Ethylene Signaling Pathway

Science's STKE, 2005(276).

Ethylene signaling pathway.

Science's STKE : Signal Transduction Knowledge Environment, 2005(276). http://www.scopus.com/inward/record.url?eid=2-s2.0-33644877967&partnerID=MN8TOARS

Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

Ethylene signalling and response pathway: a unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

Convergence of Signaling Pathways in the Control of Differential Cell Growth in Arabidopsis

Developmental Cell, 7(2), 193–204.

Short-Term Growth Responses to Ethylene in Arabidopsis Seedlings Are EIN3/EIL1 Independent

Plant Physiology, 136(2), 2921–2927.

The Ethylene Signaling Pathway

Science, 306(5701), 1513–1515.