Works (60)

2020 journal article

An Improved Recombineering Toolset for Plants

The Plant Cell, 32(1), 100–122.

By: J. Brumos, C. Zhao, Y. Gong, D. Soriano, A. Patel, M. Perez-Amador, A. Stepanova, J. Alonso

Source: ORCID
Added: January 11, 2020

2020 journal article

Development of a relative quantification method for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 34(6).

By: M. Bagley, A. Stepanova, M. Ekelof, J. Alonso & D. Muddiman

Sources: Web Of Science, ORCID
Added: March 10, 2020

2020 journal article

Structure–Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes

Plant Physiology, 4, pp.00310.2020.

By: J. Brumos, B. Bobay, C. Clark, J. Alonso & A. Stepanova

Source: ORCID
Added: July 2, 2020

2019 article

An improved plant toolset for high-throughput recombineering

Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2019, June 3). (Vol. 6). Vol. 6.

By: J. Brumos, C. Zhao, Y. Gong, D. Soriano, A. Patel, M. Perez-Amador, A. Stepanova, J. Alonso

Source: ORCID
Added: December 19, 2019

2019 journal article

Epigenetic silencing of a multifunctional plant stress regulator

ELIFE, 8.

By: M. Zander, B. Willige, Y. He, T. Nguyen, A. Langford, R. Nehring, E. Howell, R. McGrath ...

Sources: Web Of Science, ORCID
Added: September 30, 2019

2019 article

From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration

Stepanova, A. N., & Alonso, J. M. (2019, July). PLANT CELL, Vol. 31, pp. 1393–1394.

By: A. Stepanova & J. Alonso

Sources: Web Of Science, ORCID
Added: July 29, 2019

2019 journal article

Monitoring Ethylene in Plants: Genetically Encoded Reporters and Biosensors

Small Methods.

By: J. Fernandez‐Moreno & A. Stepanova

Source: ORCID
Added: December 19, 2019

2019 article

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC GENOMICS, Vol. 20.

By: P. Perkins, S. Mazzoni-Putman, A. Stepanova, J. Alonso & S. Heber

Sources: Web Of Science, ORCID
Added: July 1, 2019

2018 journal article

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1).

By: R. Bhosale, J. Giri, B. Pandey, R. Giehl, A. Hartmann, R. Traini, J. Truskina, N. Leftley ...

Sources: ORCID, Crossref
Added: December 19, 2019

2018 journal article

A plant biologist’s toolbox to study translation

Frontiers in Plant Science, 9.

By: S. Mazzoni-Putman & A. Stepanova

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2018 journal article

Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1), 1818.

By: R. Bhosale, J. Giri, B. Pandey, R. Giehl, A. Hartmann, R. Traini, J. Truskina, N. Leftley ...

Sources: ORCID, Crossref
Added: December 19, 2019

2018 journal article

Local Auxin Biosynthesis Is a Key Regulator of Plant Development

Developmental Cell, 47(3), 306–318.e5.

By: J. Brumos, L. Robles, J. Yun, T. Vu, S. Jackson, J. Alonso, A. Stepanova

Sources: NC State University Libraries, ORCID
Added: November 26, 2018

2017 journal article

Editorial: Relevance of translational regulation on plant growth and environmental responses

Frontiers in Plant Science, 8.

By: A. Ferrando, M. Castellano, P. Lisón, D. Leister, A. Stepanova & J. Hanson

Source: ORCID
Added: December 19, 2019

2017 journal article

The triple response assay and its use to characterize ethylene mutants in Arabidopsis

Ethylene Signaling: Methods and Protocols, 1573, 163–209.

By: C. Merchante & A. Stepanova

Source: NC State University Libraries
Added: August 6, 2018

2017 chapter

The triple response assay and its use to characterize ethylene mutants in arabidopsis

In Methods in Molecular Biology (Vol. 1573, pp. 163–209).

By: C. Merchante & A. Stepanova

Source: ORCID
Added: December 19, 2019

2017 journal article

Translation regulation in plants: an interesting past, an exciting present and a promising future

Plant Journal, 90(4), 628–653.

By: C. Merchante, A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis

Proceedings of the National Academy of Sciences of the United States of America, 113(39), 10742–10744.

By: A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Cutting Out the Middle Man in Light-Hormone Interactions

Developmental Cell, 39(5), 524–526.

By: A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Genome-Wide Search for Translated Upstream Open Reading Frames in Arabidopsis Thaliana

IEEE Transactions on Nanobioscience, 15(2), 150–159.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Transcriptomic signature of the SHATTERPROOF2 expression domain reveals the meristematic nature of Arabidopsis gynoecial medial domain

Plant Physiology, 171(1), 42–61.

By: G. Villarino, Q. Hu, S. Manrique, M. Flores-Vergara, B. Sehra, L. Robles, J. Brumos, A. Stepanova ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 chapter

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana

In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Sources: ORCID, Crossref
Added: December 19, 2019

2015 journal article

A recombineering-based gene tagging system for Arabidopsis

Methods in Molecular Biology (Clifton, N.J.), 1227, 233–243.

By: J. Alonso & A. Stepanova

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 conference paper

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

Bioinformatics research and applications (isbra 2015), 9096, 138–149.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

Cell, 163(3), 684–697.

By: C. Merchante, J. Brumos, J. Yun, Q. Hu, K. Spencer, P. Enríquez, B. Binder, S. Heber, A. Stepanova, J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 conference paper

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

2015 IEEE 5th International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2015.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 book

Plant Functional genomics: Methods and protocols: Second Edition

In Plant Functional Genomics: Methods and Protocols: Second Edition (pp. 1–526).

By: J. Alonso & A. Stepanova

Source: ORCID
Added: December 19, 2019

2015 journal article

Plant functional genomics methods and protocols second edition preface

Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.

By: J. Alonso & A. Stepanova

Source: NC State University Libraries
Added: August 6, 2018

2015 book

Plant functional genomics: Methods and protocols

New York: Humana Press.

Source: NC State University Libraries
Added: August 6, 2018

2014 chapter

A recombineering-based gene tagging system for Arabidopsis

In Bacterial Artificial Chromosomes: Second Edition (pp. 233–243).

By: J. Alonso & A. Stepanova

Source: ORCID
Added: December 19, 2019

2014 book

Arabidopsis transformation with large bacterial artificial chromosomes

In Methods in Molecular Biology (Vol. 1062, pp. 271–283).

By: J. Alonso & A. Stepanova

Source: ORCID
Added: December 19, 2019

2014 journal article

Genetic aspects of auxin biosynthesis and its regulation

Physiologia Plantarum, 151(1), 3–12.

By: J. Brumos, J. Alonso & A. Stepanova

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

ArabidopsisSABRE and CLASP interact to stabilize cell division plane orientation and planar polarity

Nature Communications, 4.

By: S. Pietra, A. Gustavsson, C. Kiefer, L. Kalmbach, P. Hörstedt, Y. Ikeda, A. Stepanova, J. Alonso, M. Grebe

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 conference paper

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants

2013 IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2013.

By: K. Merchante, Q. Hu, A. Stepanova, J. Eonso & S. Heber

Source: ORCID
Added: December 19, 2019

2013 journal article

Ethylene signaling: Simple ligand, complex regulation

Current Opinion in Plant Biology, 16(5), 554–560.

By: C. Merchante, J. Alonso & A. Stepanova

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

Kinetic analysis of Arabidopsis glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition

Biochemical Journal, 450(1), 37–46.

By: J. Kopycki, E. Wieduwild, J. Kohlschmidt, W. Brandt, A. Stepanova, J. Alonso, M. Pedras, S. Abel, C. Grubb

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

Local auxin sources orient the apical-basal axis in arabidopsis embryos

Current Biology, 23(24), 2506–2512.

By: H. Robert, P. Grones, A. Stepanova, L. Robles, A. Lokerse, J. Alonso, D. Weijers, J. Friml

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2013 journal article

Molecular mechanisms of ethylene-auxin interaction

Molecular Plant, 6(6), 1734–1737.

By: L. Robles, A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2011 journal article

A recombineering-based gene tagging system for Arabidopsis

Plant Journal, 66(4), 712–723.

By: R. Zhou, L. Benavente, A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2011 journal article

A small-molecule screen identifies L-Kynurenine as a competitive inhibitor of TAA1/TAR activity in Ethylene-Directed Auxin Biosynthesis and root growth in Arabidopsis

Plant Cell, 23(11), 3944–3960.

By: W. He, J. Brumos, H. Li, Y. Ji, M. Ke, X. Gong, Q. Zeng, W. Li ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2011 journal article

Bypassing Transcription: A Shortcut in Cytokinin-Auxin Interactions

Developmental Cell, 21(4), 608–610.

By: A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2011 journal article

The Arabidopsis YUCCA1 Flavin Monooxygenase functions in the Indole-3-Pyruvic acid branch of Auxin Biosynthesis

Plant Cell, 23(11), 3961–3973.

By: A. Stepanova, J. Yun, L. Robles, O. Novak, W. He, H. Guo, K. Ljung, J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2009 journal article

Ethylene signaling and response: where different regulatory modules meet

Current Opinion in Plant Biology, 12(5), 548–555.

By: A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2009 journal article

Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis

Nature Cell Biology, 11(6), 731–738.

By: Y. Ikeda, S. Men, U. Fischer, A. Stepanova, J. Alonso, K. Ljung, M. Grebe

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2008 journal article

TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development

Cell, 133(1), 177–191.

By: A. Stepanova, J. Robertson-Hoyt, J. Yun, L. Benavente, D. Xie, K. Dole?al, A. Schlereth, G. Jürgens, J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2007 journal article

Multilevel interactions between ethylene and auxin in Arabidopsis roots

Plant Cell, 19(7), 2169–2185.

By: A. Stepanova, J. Yun, A. Likhacheva & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2006 journal article

PCR-based screening for insertional mutants.

Methods in Molecular Biology (Clifton, N.J.), 323, 163–172.

By: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2005 journal article

A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in arabidopsis

Plant Cell, 17(8), 2230–2242.

By: A. Stepanova, J. Hoyt, A. Hamilton & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2005 journal article

Arabidopsis ethylene signaling pathway.

Science's STKE : Signal Transduction Knowledge Environment, 2005(276).

By: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2005 journal article

Ethylene signaling pathway.

Science's STKE : Signal Transduction Knowledge Environment, 2005(276).

By: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2005 journal article

Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

By: A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2005 journal article

Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

By: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2004 journal article

Convergence of signaling pathways in the control of differential cell growth in Arabidopsis

Developmental Cell, 7(2), 193–204.

By: H. Li, P. Johnson, A. Stepanova, J. Alonso & J. Ecker

Source: ORCID
Added: December 19, 2019

2004 journal article

Short-term growth responses to ethylene in arabidopsis seedlings are EIN3/EIL1 independent

Plant Physiology, 136(2), 2921–2927.

By: B. Binder, L. Mortimore, A. Stepanova, J. Ecker & A. Bleecker

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2004 journal article

The ethylene signaling pathway

Science, 306(5701), 1513–1515.

By: J. Alonso & A. Stepanova

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2003 journal article

Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis

Proceedings of the National Academy of Sciences of the United States of America, 100(5), 2992–2997.

By: J. Alonso, A. Stepanova, R. Solano, E. Wisman, S. Ferrari, F. Ausubel, J. Ecker

Source: ORCID
Added: December 19, 2019

2003 journal article

Genome-wide insertional mutagenesis of Arabidopsis thaliana

Science, 301(5633), 653–657.

By: J. Alonso, A. Stepanova, T. Leisse, C. Kim, H. Chen, P. Shinn, D. Stevenson, J. Zimmerman ...

Source: ORCID
Added: December 19, 2019

2003 chapter

T-DNA mutagenesis in Arabidopsis

In Plant functional genomics.

By: A. Stepanova & J. Alonso

Source: NC State University Libraries
Added: August 6, 2018

2003 journal article

T-DNA mutagenesis in Arabidopsis.

Methods in Molecular Biology (Clifton, N.J.), 236, 177–188.

By: J. Alonso & A. Stepanova

Source: ORCID
Added: December 19, 2019

2000 journal article

Ethylene signaling: From mutants to molecules

Current Opinion in Plant Biology, 3(5), 353–360.

By: A. Stepanova & J. Ecker

Source: ORCID
Added: December 19, 2019

1998 journal article

Nuclear events in ethylene signaling: A transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1

Genes and Development, 12(23), 3703–3714.

By: R. Solano, A. Stepanova, Q. Chao & J. Ecker

Source: ORCID
Added: December 19, 2019

Employment

2019 - present

North Carolina State University Raleigh, NC, US
Associate Professor Plant and Microbial Biology

2014 - 2019

North Carolina State University Raleigh, NC, US
Assistant Professor Plant and Microbial Biology

2009 - 2013

North Carolina State University Raleigh, NC, US
Research Assistant Professor Genetics

2003 - 2009

North Carolina State University Raleigh, NC, US
Research Associate Genetics

2001 - 2003

North Carolina State University Raleigh, NC, US
Postdoctoral fellow Genetics

Education

1995 - 2001

University of Pennsylvania Philadelphia, PA, US
PhD Biology

1993 - 1995

University of Nevada Reno Reno, NV, US
BS Biology

1990 - 1995

N. I. Lobachevsky State University of Nizhny Novgorod Nizhny Novgorod, RU
BS/MS Biology