Works (50)

Updated: February 22nd, 2024 05:54

2024 article

Serovar-level identification of bacterial foodborne pathogens from full-length 16S rRNA gene sequencing

Grinevich, D., Harden, L., Thakur, S., & Callahan, B. (2024, February 6). (M. G. I. Langille, Ed.). MSYSTEMS, Vol. 2.

By: D. Grinevich n, L. Harden n, S. Thakur n & B. Callahan n

co-author countries: United States of America 🇺🇸

Ed(s): M. Langille

author keywords: serotyping; food-borne pathogens; Salmonella; Escherichia coli; 16S rRNA; long-read sequencing
Sources: ORCID, Web Of Science
Added: February 7, 2024

2023 article

A pile of pipelines: An overview of the bioinformatics software for metabarcoding data analyses

Hakimzadeh, A., Abdala Asbun, A., Albanese, D., Bernard, M., Buchner, D., Callahan, B., … Anslan, S. (2023, August 7). MOLECULAR ECOLOGY RESOURCES, Vol. 8.

co-author countries: Belgium 🇧🇪 Canada 🇨🇦 Czechia 🇨🇿 Germany 🇩🇪 Estonia 🇪🇪 Finland 🇫🇮 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Italy 🇮🇹 Netherlands 🇳🇱 Sweden 🇸🇪 United States of America 🇺🇸
author keywords: amplicon data analysis; bioinformatics; environmental DNA; metabarcoding; pipeline; review
Sources: Web Of Science, ORCID
Added: August 28, 2023

2023 journal article

Evaluation of SARS-CoV-2 identification methods through surveillance of companion animals in SARS-CoV-2-positive homes in North Carolina, March to December 2020

PEERJ, 11.

By: T. Gin n, E. Petzold*, D. Uthappa*, C. Neighbors*, A. Borough*, C. Gin n, E. Lashnits*, G. Sempowski* ...

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
author keywords: COVID-19; Coronavirus; SARS-CoV-2; Dogs; Cats; Antibody; Serology
Sources: Web Of Science, ORCID
Added: November 27, 2023

2023 journal article

Gallbladder microbiota in healthy dogs and dogs with mucocele formation

PLOS ONE, 18(2).

By: J. Gookin n, A. Hartley n, K. Aicher n, K. Mathews n, R. Cullen n, J. Cullen n, B. Callahan n, D. Stowe n ...

co-author countries: United States of America 🇺🇸
MeSH headings : Dogs; Animals; Gallbladder / pathology; Mucocele / veterinary; RNA, Ribosomal, 16S / genetics; Bile / microbiology; Gallbladder Diseases / veterinary; Microbiota / genetics; Bile Duct Diseases; Dog Diseases / diagnosis
Sources: Web Of Science, ORCID
Added: April 24, 2023

2023 article

GardnerellaDiversity and Ecology in Pregnancy and Preterm Birth

Berman, H. L., Goltsman, D. S. A., Anderson, M., Relman, D. A., & Callahan, B. J. (2023, February 4).

By: H. Berman n, D. Goltsman*, M. Anderson n, D. Relman* & B. Callahan n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: February 5, 2023

2023 journal article

Longitudinal Analysis of Canine Oral Microbiome Using Whole Genome Sequencing in Aging Companion Dogs

ANIMALS, 13(24).

By: G. Templeton n, G. Fefer n, B. Case n, J. Roach*, M. Azcarate-Peril*, M. Gruen n, B. Callahan n, N. Olby n

co-author countries: United States of America 🇺🇸
author keywords: oral; microbiome; canine cognitive dysfunction syndrome; Alzheimer's disease
Sources: Web Of Science, ORCID
Added: January 16, 2024

2023 journal article

Meta-analysis reveals the vaginal microbiome is a better predictor of earlier than later preterm birth

BMC Biology.

By: C. Huang n, C. Gin n, J. Fettweis*, B. Foxman*, B. Gelaye*, D. MacIntyre*, A. Subramaniam*, W. Fraser, N. Tabatabaei, B. Callahan n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: February 1, 2024

2023 article

Microbiome analysis of bile from apparently healthy cats and cats with suspected hepatobiliary disease

Slead, T. S., Callahan, B. J., Schreeg, M. E., Seiler, G. S., Stowe, D. M., Azcarate-Peril, M. A., … Gookin, J. L. (2023, September 13). JOURNAL OF VETERINARY INTERNAL MEDICINE, Vol. 9.

By: T. Slead n, B. Callahan n, M. Schreeg n, G. Seiler n, D. Stowe n, M. Azcarate-Peril*, M. Jacob n, J. Gookin n

co-author countries: United States of America 🇺🇸
author keywords: cholangitis; feline; gallbladder; microbiota
Sources: Web Of Science, ORCID
Added: September 14, 2023

2023 article

Rookery through rehabilitation: Microbial community assembly in newborn harbour seals after maternal separation

Switzer, A. D., Callahan, B. J., Costello, E. K., Bik, E. M., Fontaine, C., Gulland, F. M. D., & Relman, D. A. (2023, June 16). ENVIRONMENTAL MICROBIOLOGY, Vol. 6.

By: A. Switzer*, B. Callahan n, E. Costello*, E. Bik*, C. Fontaine*, F. Gulland*, D. Relman*

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: July 10, 2023

2023 article

Serovar-level Identification of Bacterial Foodborne Pathogens From Full-length 16S rRNA Gene Sequencing

Grinevich, D., Harden, L., Thakur, S., & Callahan, B. J. (2023, June 28).

By: D. Grinevich, L. Harden, S. Thakur & B. Callahan n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: February 1, 2024

2022 journal article

Identification of microbial taxa present in Ctenocephalides felis (cat flea) reveals widespread co-infection and associations with vector phylogeny

PARASITES & VECTORS, 15(1).

By: C. Manvell n, H. Berman n, B. Callahan n, E. Breitschwerdt n, W. Swain n, K. Ferris n, R. Maggi n, E. Lashnits n

co-author countries: United States of America 🇺🇸
author keywords: Flea microbiome; Bartonella; Wolbachia; Rickettsia; Flea phylogenetics; Flea diversity; DNA barcoding; 16S NGS
MeSH headings : Animals; Cats; Bartonella / genetics; Cat Diseases / parasitology; Coinfection; Ctenocephalides / microbiology; Flea Infestations / epidemiology; Flea Infestations / veterinary; Phylogeny; Rickettsia / genetics
Sources: Web Of Science, ORCID
Added: November 14, 2022

2022 article

Implications of taxonomic bias for microbial differential-abundance analysis

McLaren, M. R., Nearing, J. T., Willis, A. D., Lloyd, K. G., & Callahan, B. J. (2022, August 19).

By: M. McLaren*, J. Nearing*, A. Willis*, K. Lloyd* & B. Callahan n

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
Source: ORCID
Added: August 24, 2022

2022 article

Meta-Analysis Reveals the Vaginal Microbiome is a Better Predictor of Earlier Than Later Preterm Birth

Huang, C., Gin, C., Fettweis, J., Foxman, B., Gelaye, B., MacIntyre, D. A., … Callahan, B. (2022, September 27).

By: C. Huang n, C. Gin n, J. Fettweis*, B. Foxman*, B. Gelaye*, D. MacIntyre*, A. Subramaniam*, W. Fraser*, N. Tabatabaei*, B. Callahan n

co-author countries: Canada 🇨🇦 United Kingdom of Great Britain and Northern Ireland 🇬🇧 India 🇮🇳 United States of America 🇺🇸
Source: ORCID
Added: October 20, 2022

2022 journal article

Phylogeny-guided microbiome OTU-specific association test (POST)

MICROBIOME, 10(1).

By: C. Huang n, B. Callahan n, M. Wu*, S. Holloway n, H. Brochu n, W. Lu n, X. Peng n, J. Tzeng n

co-author countries: United States of America 🇺🇸
author keywords: Association test; Phylogenetic tree; Kernel machine regression
MeSH headings : Computational Biology / methods; Computer Simulation; Female; Humans; Infant, Newborn; Microbiota / genetics; Phylogeny; Premature Birth
Sources: Web Of Science, ORCID
Added: June 20, 2022

2021 journal article

Effects of danofloxacin dosing regimen on gastrointestinal pharmacokinetics and fecal microbiome in steers

SCIENTIFIC REPORTS, 11(1).

By: J. Halleran n, B. Callahan n, M. Jacob n, H. Sylvester n, T. Prange n, M. Papich n, D. Foster n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Cattle; Enterococcus / drug effects; Escherichia coli / drug effects; Fluoroquinolones / pharmacology; Gastrointestinal Microbiome / drug effects; Gastrointestinal Tract / drug effects; Gastrointestinal Tract / microbiology; Male
Sources: Web Of Science, ORCID
Added: July 26, 2021

2021 journal article

Ultra-accurate microbial amplicon sequencing with synthetic long reads

MICROBIOME, 9(1).

By: B. Callahan n, D. Grinevich n, S. Thakur n, M. Balamotis & T. Ben Yehezkel

co-author countries: United States of America 🇺🇸
author keywords: Synthetic long reads; Amplicon sequencing; Metagenomics; Long-read sequencing
MeSH headings : High-Throughput Nucleotide Sequencing; Metagenome; Microbiota / genetics; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA
Sources: ORCID, Web Of Science
Added: June 6, 2021

2020 journal article

Clostridioides difficile carriage in animals and the associated changes in the host fecal microbiota

ANAEROBE, 66.

By: R. Thanissery n, M. McLaren n, A. Rivera n, A. Reed n, N. Betrapally n, T. Burdette n, J. Winston n, M. Jacob n, B. Callahan n, C. Theriot n

co-author countries: United States of America 🇺🇸
author keywords: C. difficile; C. hiranonis; Microbiome; Ribotype; Antibiotic resistance; Animal; Canine; Equine; Feline
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bacterial Toxins / genetics; Bacterial Toxins / metabolism; Bacterial Typing Techniques; Cats; Chlorocebus aethiops; Clostridioides difficile / classification; Clostridioides difficile / drug effects; Clostridioides difficile / physiology; Clostridium Infections / epidemiology; Clostridium Infections / microbiology; Clostridium Infections / veterinary; Coculture Techniques; Dogs; Feces / microbiology; Female; Gastrointestinal Microbiome; Horses; Hospitals, Animal; Host-Pathogen Interactions; Male; Microbial Interactions; Microbial Sensitivity Tests; North Carolina; Polymerase Chain Reaction; Prevalence; RNA, Ribosomal, 16S; Ribotyping; Risk Factors; Tertiary Healthcare; Vero Cells
Sources: Web Of Science, ORCID
Added: January 11, 2021

2020 journal article

Pathogen resistance may be the principal evolutionary advantage provided by the microbiome

Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1808), 20190592.

By: M. McLaren n & B. Callahan n

co-author countries: United States of America 🇺🇸
author keywords: colonization resistance; commensal bacteria; defensive symbionts; evolution of immunity; host-microbiome interactions; microbiome
MeSH headings : Animals; Biological Evolution; Disease Resistance; Host Microbial Interactions; Invertebrates / microbiology; Plant Diseases; Plants / microbiology; Symbiosis; Vertebrates / microbiology
Source: ORCID
Added: August 12, 2020

2020 journal article

The role of the microbiome in host evolution

Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1808), 20190588.

By: O. Kolodny*, B. Callahan n & A. Douglas*

co-author countries: Israel 🇮🇱 United States of America 🇺🇸
author keywords: beneficial microbes; coevolution; commensals; eco-evolutionary dynamics
MeSH headings : Animals; Biological Evolution; Communicable Disease Control; Crops, Agricultural / microbiology; Host Microbial Interactions; Humans; Microbiota; Nutritive Value; Pest Control
Source: ORCID
Added: August 12, 2020

2020 article

Ultra-accurate Microbial Amplicon Sequencing Directly from Complex Samples with Synthetic Long Reads

Callahan, B. J., Grinevich, D., Thakur, S., Balamotis, M. A., & Yehezkel, T. B. (2020, July 7). (Vol. 7). Vol. 7.

By: B. Callahan n, D. Grinevich n, S. Thakur n, M. Balamotis* & T. Yehezkel*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: July 9, 2020

2020 journal article

Understanding and interpreting community sequencing measurements of the vaginal microbiome

BJOG: An International Journal of Obstetrics & Gynaecology, 127(2), 139–146.

By: H. Berman n, . McLaren n & B. Callahan n

co-author countries: United States of America 🇺🇸
author keywords: 16S rRNA gene; amplicon sequencing; metagenomics; metatranscriptomics; vaginal microbiome
MeSH headings : Female; Humans; Microbiota / genetics; RNA, Ribosomal, 16S; Reproducibility of Results; Sequence Analysis, DNA; Vagina / microbiology
Source: ORCID
Added: November 2, 2019

2019 journal article

Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers

PLOS ONE, 14(10).

By: D. Foster n, M. Jacob n, K. Farmer n, B. Callahan n, C. Theriot n, S. Kathariou n, N. Cernicchiaro*, T. Prange n, M. Papich n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Anti-Bacterial Agents / administration & dosage; Anti-Bacterial Agents / chemistry; Anti-Bacterial Agents / pharmacokinetics; Cattle; Cattle Diseases / drug therapy; Cattle Diseases / microbiology; Cephalosporins / administration & dosage; Cephalosporins / chemistry; Cephalosporins / pharmacokinetics; Drug Resistance, Bacterial; Escherichia coli / classification; Escherichia coli / drug effects; Escherichia coli / genetics; Feces / microbiology; Microbial Sensitivity Tests; Microbiota; RNA, Ribosomal, 16S / genetics
Sources: Web Of Science, ORCID
Added: June 1, 2020

2019 article

Consistent and correctable bias in metagenomic sequencing experiments

McLaren, M. R., Willis, A. D., & Callahan, B. J. (2019, February 25). BioRxiv, Vol. 2, p. 559831.

By: M. McLaren n, A. Willis* & B. Callahan n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: February 26, 2019

2019 journal article

Consistent and correctable bias in metagenomic sequencing experiments

ELife.

By: M. McLaren n, A. Willis* & B. Callahan n

co-author countries: United States of America 🇺🇸
MeSH headings : Bacteria / classification; Bacteria / genetics; Bias; Biota; Cluster Analysis; DNA, Ribosomal / chemistry; DNA, Ribosomal / genetics; Metagenomics / methods; Models, Theoretical; Phylogeny; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA / methods
Source: ORCID
Added: September 10, 2019

2019 journal article

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

Nucleic Acids Research, 7.

By: B. Callahan n, J. Wong*, C. Heiner*, S. Oh*, C. Theriot n, A. Gulati*, S. McGill*, M. Dougherty*

co-author countries: United States of America 🇺🇸
MeSH headings : Escherichia coli K12 / classification; Escherichia coli K12 / genetics; Escherichia coli O157 / classification; Escherichia coli O157 / genetics; Feces / microbiology; High-Throughput Nucleotide Sequencing; Humans; Microbiota / genetics; Phylogeny; Polymerase Chain Reaction / methods; Polymorphism, Single Nucleotide / genetics; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA
Source: ORCID
Added: August 21, 2019

2019 journal article

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

BIOINFORMATICS, 35(1), 95–103.

By: M. Ghaemi*, D. DiGiulio*, K. Contrepois*, B. Callahan n, T. Ngo*, B. Lee-McMullen*, B. Lehallier*, A. Robaczewska* ...

co-author countries: Canada 🇨🇦 United States of America 🇺🇸

Ed(s): J. Wren

MeSH headings : Computational Biology; Female; Humans; Metabolome; Microbiota; Pregnancy; Proteome; Transcriptome
Sources: Web Of Science, ORCID
Added: March 11, 2019

2018 article

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

Callahan, B. J., Wong, J., Heiner, C., Oh, S., Theriot, C. M., Gulati, A. S., … Dougherty, M. K. (2018, August 15). (Vol. 8). Vol. 8.

By: B. Callahan n, J. Wong*, C. Heiner*, S. Oh*, C. Theriot n, A. Gulati*, S. McGill*, M. Dougherty*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: August 21, 2019

2018 article

In Nature, There Is Only Diversity

MBIO, Vol. 9.

By: M. McLaren n & B. Callahan n

co-author countries: United States of America 🇺🇸
author keywords: metagenomics; microbial ecology; microbiome
MeSH headings : Metagenomics; RNA, Ribosomal, 16S
Sources: Web Of Science, ORCID
Added: August 6, 2018

2018 journal article

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

MICROBIOME, 6(1).

By: N. Davis*, D. Proctor*, S. Holmes*, D. Relman* & B. Callahan n

co-author countries: United States of America 🇺🇸
author keywords: Microbiome; Metagenomics; Marker-gene; 16S rRNA gene; DNA contamination
MeSH headings : Bacteria / classification; Bacteria / genetics; DNA Contamination; DNA, Bacterial / genetics; DNA, Ribosomal / genetics; Databases, Genetic; Genetic Markers; Humans; Internet; Metagenomics / methods; Models, Statistical; Mouth / microbiology; RNA, Ribosomal, 16S / genetics; Sequence Analysis, DNA / methods; Software
Sources: Web Of Science, ORCID
Added: January 7, 2019

2017 journal article

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

The ISME Journal, 11(12), 2639–2643.

By: B. Callahan n, P. McMurdie & S. Holmes*

co-author countries: United States of America 🇺🇸
MeSH headings : Bacteria / classification; Bacteria / genetics; Bacteria / isolation & purification; Classification / methods; Databases, Nucleic Acid; Genetic Variation; Sequence Analysis, DNA
Sources: Crossref, ORCID
Added: July 21, 2019

2017 journal article

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(37), 9966–9971.

By: B. Callahan n, D. DiGiulio*, D. Goltsman*, C. Sun*, E. Costello*, P. Jeganathan*, J. Biggio*, R. Wong* ...

co-author countries: United States of America 🇺🇸
author keywords: pregnancy; prematurity; vaginal microbiota; Lactobacillus; Gardnerella
MeSH headings : Adult; Black or African American; Case-Control Studies; Cohort Studies; DNA Replication; Female; Gardnerella vaginalis / classification; Humans; Lactobacillus / classification; Microbiota / genetics; Microbiota / immunology; Pregnancy; Premature Birth / etiology; Premature Birth / microbiology; RNA, Ribosomal, 16S / genetics; United States / epidemiology; Vagina / microbiology; White People
Source: Web Of Science
Added: August 6, 2018

2017 journal article

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

Proceedings of the National Academy of Sciences, 201705899.

By: B. Callahan, D. DiGiulio, D. Goltsman, C. Sun, E. Costello, P. Jeganathan, J. Biggio, R. Wong ...

Source: ORCID
Added: August 21, 2019

2017 article

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Davis, N. M., Proctor, D. M., Holmes, S. P., Relman, D. A., & Callahan, B. J. (2017, November 17). (Vol. 11). Vol. 11.

By: N. Davis*, D. Proctor*, S. Holmes*, D. Relman* & B. Callahan n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: August 21, 2019

2016 journal article

1,2-Dichloroethane Exposure Alters the Population Structure, Metabolism, and Kinetics of a Trichloroethene-Dechlorinating Dehalococcoides mccartyi Consortium

Environmental Science & Technology, 50(22), 12187–12196.

By: K. Mayer-Blackwell*, M. Fincker*, O. Molenda*, B. Callahan*, H. Sewell*, S. Holmes*, E. Edwards*, A. Spormann*

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
MeSH headings : Biodegradation, Environmental; Chloroflexi / metabolism; Halogenation; Kinetics; Trichloroethylene / metabolism; Vinyl Chloride / metabolism
Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

F1000Research, 5, 1492.

By: B. Callahan*, K. Sankaran*, J. Fukuyama*, P. McMurdie & S. Holmes*

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

DADA2: High-resolution sample inference from Illumina amplicon data

Nature Methods, 13(7), 581–583.

By: B. Callahan*, P. McMurdie*, M. Rosen*, A. Han*, A. Johnson* & S. Holmes*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Cohort Studies; Computational Biology / methods; DNA, Bacterial / genetics; False Positive Reactions; Feces / microbiology; Female; High-Throughput Nucleotide Sequencing / methods; Humans; Lactobacillus / classification; Lactobacillus / genetics; Lactobacillus / isolation & purification; Mice; Microbiota / genetics; Pregnancy; RNA, Ribosomal, 16S / genetics; Reproducibility of Results; Sequence Analysis, DNA / methods; Software; Vagina / microbiology
Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

Nature Communications, 7(1), 10516.

By: E. Bik*, E. Costello*, A. Switzer*, B. Callahan*, S. Holmes*, R. Wells*, K. Carlin*, E. Jensen*, S. Venn-Watson*, D. Relman*

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Bacteroidetes / genetics; Bottle-Nosed Dolphin / microbiology; Gastrointestinal Microbiome / genetics; Microbiota / genetics; Mouth / microbiology; Phylogeny; RNA, Ribosomal, 16S / genetics; Respiratory System / microbiology; Sea Lions / microbiology; Seawater / microbiology; Sequence Analysis, RNA; Tenericutes / genetics; Water Microbiology
Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

Reproducible research workflow in R for the analysis of personalized human microbiome data

Pacific Symposium on Biocomputing, 21, 183–194.

By: B. Callahan, D. Proctor, D. Relman, J. Fukuyama & S. Holmes

Source: NC State University Libraries
Added: July 11, 2019

2016 conference paper

Reproducible research workflow in R for the analysis of personalized human microbiome data

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 21, 183.

By: B. Callahan, D. Proctor, D. Relman, J. Fukuyama & S. Holmes

Event: NIH Public Access

Source: ORCID
Added: August 21, 2019

2015 journal article

Temporal and spatial variation of the human microbiota during pregnancy

Proceedings of the National Academy of Sciences, 112(35), 11060–11065.

By: D. DiGiulio*, B. Callahan*, P. McMurdie*, E. Costello*, D. Lyell*, A. Robaczewska*, C. Sun*, D. Goltsman* ...

co-author countries: United States of America 🇺🇸
author keywords: 16S rRNA gene; pregnancy; preterm birth; microbiome; premature labor
MeSH headings : Female; Humans; Intestines / microbiology; Microbiota; Periodontium / microbiology; Pregnancy; Saliva / microbiology; Vagina / microbiology
Source: Crossref
Added: July 21, 2019

2015 journal article

Temporal and spatial variation of the human microbiota during pregnancy

Proceedings of the National Academy of Sciences, 112(35), 11060–11065.

By: D. DiGiulio, B. Callahan, P. McMurdie, E. Costello, D. Lyell, A. Robaczewska, C. Sun, D. Goltsman ...

Source: ORCID
Added: August 21, 2019

2014 journal article

Rapid evolution of adaptive niche construction in experimental microbial populations

Evolution, 68(11), 3307–3316.

By: B. Callahan*, T. Fukami* & D. Fisher*

co-author countries: United States of America 🇺🇸
author keywords: Adaptation; mutations; population biology; selection-experimental
MeSH headings : Adaptation, Biological; Directed Molecular Evolution; Environment; Genetic Fitness; Pseudomonas fluorescens / genetics; Pseudomonas fluorescens / physiology
Sources: Crossref, ORCID
Added: July 21, 2019

2013 journal article

Evolutionary dynamics and information hierarchies in biological systems

Annals of the New York Academy of Sciences, 1305(1), 1–17.

co-author countries: Germany 🇩🇪 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: evolution; information hierarchy; chromatin; epigenetics; viruses; networks
MeSH headings : Animals; Biological Evolution; Chromatin / metabolism; Computational Biology / methods; Epigenomics; Evolution, Molecular; Humans
Sources: Crossref, ORCID
Added: July 21, 2019

2012 journal article

Denoising PCR-amplified metagenome data

BMC Bioinformatics, 13(1), 283.

By: M. Rosen, B. Callahan, D. Fisher & S. Holmes

Sources: NC State University Libraries, ORCID
Added: July 28, 2019

2012 journal article

The length scale of selection in protein evolution

Fly, 6(1), 16–20.

By: B. Callahan*

co-author countries: United States of America 🇺🇸
author keywords: molecular evolution; epistasis; fitness landscape; protein; correlation function; length scale; Drosophila; positive selection; molecular clock; overdispersion
MeSH headings : Animals; Drosophila; Drosophila Proteins / chemistry; Drosophila Proteins / genetics; Drosophila melanogaster; Evolution, Molecular; Selection, Genetic
Sources: Crossref, ORCID
Added: July 21, 2019

2011 journal article

Correlated Evolution of Nearby Residues in Drosophilid Proteins

PLoS Genetics, 7(2), e1001315.

co-author countries: United States of America 🇺🇸

Ed(s): G. McVean

MeSH headings : Amino Acid Substitution; Animals; Drosophila Proteins / genetics; Drosophila melanogaster / genetics; Evolution, Molecular; Multigene Family; Mutation; Phylogeny; Selection, Genetic
Sources: Crossref, ORCID
Added: July 28, 2019

2011 journal article

Heterozygote advantage as a natural consequence of adaptation in diploids

Proceedings of the National Academy of Sciences, 108(51), 20666–20671.

By: D. Sellis, B. Callahan*, D. Petrov & P. Messer

co-author countries: United States of America 🇺🇸
MeSH headings : Adaptation, Physiological / genetics; Alleles; Animal Migration; Animals; Diploidy; Emigration and Immigration; Gene Expression; Genetic Variation; Haploidy; Heterozygote; Humans; Models, Genetic; Mutation; Phenotype; Polymorphism, Genetic; Selection, Genetic
Sources: Crossref, ORCID
Added: July 21, 2019

2009 journal article

Emergent gene order in a model of modular polyketide synthases

Proceedings of the National Academy of Sciences, 106(46), 19410–19415.

By: B. Callahan*, M. Thattai* & B. Shraiman*

co-author countries: India 🇮🇳 United States of America 🇺🇸
author keywords: polyketides; horizontal transfer; evolution; collinearity; evolvability
MeSH headings : Animals; Bacteria / enzymology; Bacteria / genetics; Computer Simulation; Evolution, Molecular; Gene Order; Macrolides / metabolism; Models, Genetic; Plants / enzymology; Plants / genetics; Polyketide Synthases / biosynthesis; Polyketide Synthases / genetics; Protein Biosynthesis / genetics; Selection, Genetic
Sources: Crossref, ORCID
Added: July 28, 2019

2009 thesis

Evolution on an interacting fitness landscape: The effects of the interplay of epistasis and recombination on genetic structure

University of California, Santa Barbara.

By: B. Callahan

Source: ORCID
Added: August 21, 2019

2003 journal article

Exploring the Interplay between Topology and Secondary Structural Formation in the Protein Folding Problem

The Journal of Physical Chemistry B, 107(40), 11193–11200.

By: M. Cheung*, J. Finke*, B. Callahan* & J. Onuchic*

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID
Added: July 28, 2019

Employment

Updated: November 17th, 2017 13:45

2017 - present

NC State University, College of Veterinary Medicine Raleigh, NC, US
Assistant Professor Population Health & Pathobiology

Education

Updated: November 17th, 2017 13:44

2003 - 2009

University of California, Santa Barbara Santa Barbara, CA, US
Ph.D. Physics

1998 - 2002

Iowa State University Ames, IA, US
Bachelors of Science Physics, Math

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2024) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.