Works (40)

2022 journal article

Identification of microbial taxa present in Ctenocephalides felis (cat flea) reveals widespread co-infection and associations with vector phylogeny

PARASITES & VECTORS, ["15"](1), [""].

By: C. Manvell, H. Berman, B. Callahan, E. Breitschwerdt, W. Swain, K. Ferris, R. Maggi, E. Lashnits

Sources: Web Of Science, ORCID
Added: November 14, 2022

2022 article

Implications of taxonomic bias for microbial differential-abundance analysis

McLaren, M. R., Nearing, J. T., Willis, A. D., Lloyd, K. G., & Callahan, B. J. (2022, August 19).

By: M. McLaren, J. Nearing, A. Willis, K. Lloyd & B. Callahan

Source: ORCID
Added: August 24, 2022

2022 article

Meta-Analysis Reveals the Vaginal Microbiome is a Better Predictor of Earlier Than Later Preterm Birth

Huang, C., Gin, C., Fettweis, J., Foxman, B., Gelaye, B., MacIntyre, D. A., … Callahan, B. (2022, September 27).

By: C. Huang*, C. Gin*, J. Fettweis*, B. Foxman*, B. Gelaye*, D. MacIntyre*, A. Subramaniam*, W. Fraser*, N. Tabatabaei*, B. Callahan

Source: ORCID
Added: October 20, 2022

2022 journal article

Phylogeny-guided microbiome OTU-specific association test (POST)

MICROBIOME, ["10"](1), [""].

By: C. Huang*, B. Callahan, M. Wu, S. Holloway, H. Brochu, W. Lu, X. Peng, J. Tzeng

Sources: Web Of Science, ORCID
Added: June 20, 2022

2021 journal article

Effects of danofloxacin dosing regimen on gastrointestinal pharmacokinetics and fecal microbiome in steers

SCIENTIFIC REPORTS, ["11"](1), [""].

Sources: Web Of Science, ORCID
Added: July 26, 2021

2021 journal article

Ultra-accurate microbial amplicon sequencing with synthetic long reads

MICROBIOME, ["9"](1), [""].

By: B. Callahan, D. Grinevich, S. Thakur, M. Balamotis* & T. Ben Yehezkel*

Sources: ORCID, Web Of Science
Added: June 6, 2021

2020 journal article

Clostridioides difficile carriage in animals and the associated changes in the host fecal microbiota

ANAEROBE, 66.

Sources: Web Of Science, ORCID
Added: January 11, 2021

2020 journal article

Pathogen resistance may be the principal evolutionary advantage provided by the microbiome

Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1808), 20190592.

By: M. McLaren & B. Callahan

Source: ORCID
Added: August 12, 2020

2020 journal article

The role of the microbiome in host evolution

Philosophical Transactions of the Royal Society B: Biological Sciences, 375(1808), 20190588.

By: O. Kolodny*, B. Callahan & A. Douglas*

Source: ORCID
Added: August 12, 2020

2020 article

Ultra-accurate Microbial Amplicon Sequencing Directly from Complex Samples with Synthetic Long Reads

Callahan, B. J., Grinevich, D., Thakur, S., Balamotis, M. A., & Yehezkel, T. B. (2020, July 7). (Vol. 7). Vol. 7.

By: B. Callahan, D. Grinevich*, S. Thakur*, M. Balamotis* & T. Yehezkel*

Source: ORCID
Added: July 9, 2020

2020 journal article

Understanding and interpreting community sequencing measurements of the vaginal microbiome

BJOG: An International Journal of Obstetrics & Gynaecology, 127(2), 139–146.

By: H. Berman*, . McLaren* & B. Callahan

Source: ORCID
Added: November 2, 2019

2019 journal article

Ceftiofur formulation differentially affects the intestinal drug concentration, resistance of fecal Escherichia coli, and the microbiome of steers

PLOS ONE, 14(10).

By: D. Foster, M. Jacob, K. Farmer*, B. Callahan, C. Theriot, S. Kathariou, N. Cernicchiaro*, T. Prange, M. Papich

Sources: Web Of Science, ORCID
Added: June 1, 2020

2019 article

Consistent and correctable bias in metagenomic sequencing experiments

McLaren, M. R., Willis, A. D., & Callahan, B. J. (2019, February 25). BioRxiv, Vol. 2, p. 559831.

By: M. McLaren, A. Willis* & B. Callahan

Source: ORCID
Added: February 26, 2019

2019 journal article

Consistent and correctable bias in metagenomic sequencing experiments

ELife.

By: M. McLaren, A. Willis* & B. Callahan

Source: ORCID
Added: September 10, 2019

2019 journal article

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

Nucleic Acids Research, 7.

By: B. Callahan, J. Wong*, C. Heiner*, S. Oh*, C. Theriot*, A. Gulati*, S. McGill*, M. Dougherty*

Source: ORCID
Added: August 21, 2019

2019 journal article

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

BIOINFORMATICS, 35(1), 95–103.

By: M. Ghaemi*, D. DiGiulio*, K. Contrepois*, B. Callahan, T. Ngo*, B. Lee-McMullen*, B. Lehallier*, A. Robaczewska* ...

Ed(s): J. Wren

Sources: Web Of Science, ORCID
Added: March 11, 2019

2018 article

High-throughput amplicon sequencing of the full-length 16S rRNA gene with single-nucleotide resolution

Callahan, B. J., Wong, J., Heiner, C., Oh, S., Theriot, C. M., Gulati, A. S., … Dougherty, M. K. (2018, August 15). (Vol. 8). Vol. 8.

By: B. Callahan, J. Wong*, C. Heiner*, S. Oh*, C. Theriot*, A. Gulati*, S. McGill*, M. Dougherty*

Source: ORCID
Added: August 21, 2019

2018 journal article

In nature, there is only diversity

MBio, 9(1), e02149–17.

By: M. McLaren & B. Callahan

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2018 journal article

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Microbiome, 6(1).

By: N. Davis*, D. Proctor*, S. Holmes*, D. Relman* & B. Callahan

Sources: NC State University Libraries, ORCID
Added: January 7, 2019

2017 journal article

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

The ISME Journal, 11(12), 2639–2643.

By: B. Callahan, P. McMurdie* & S. Holmes*

Sources: Crossref, ORCID
Added: July 21, 2019

2017 journal article

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

Proceedings of the National Academy of Sciences of the United States of America, 114(37), 9966–9971.

By: B. Callahan, D. DiGiulio*, D. Goltsman*, C. Sun*, E. Costello*, P. Jeganathan*, J. Biggio*, R. Wong* ...

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Replication and refinement of a vaginal microbial signature of preterm birth in two racially distinct cohorts of US women

Proceedings of the National Academy of Sciences, 201705899.

By: B. Callahan, D. DiGiulio, D. Goltsman, C. Sun, E. Costello, P. Jeganathan, J. Biggio, R. Wong ...

Source: ORCID
Added: August 21, 2019

2017 article

Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data

Davis, N. M., Proctor, D. M., Holmes, S. P., Relman, D. A., & Callahan, B. J. (2017, November 17). (Vol. 11). Vol. 11.

By: N. Davis*, D. Proctor*, S. Holmes*, D. Relman* & B. Callahan

Source: ORCID
Added: August 21, 2019

2016 journal article

1,2-Dichloroethane Exposure Alters the Population Structure, Metabolism, and Kinetics of a Trichloroethene-Dechlorinating Dehalococcoides mccartyi Consortium

Environmental Science & Technology, 50(22), 12187–12196.

By: K. Mayer-Blackwell*, M. Fincker*, O. Molenda*, B. Callahan, H. Sewell*, S. Holmes*, E. Edwards*, A. Spormann

Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

Bioconductor Workflow for Microbiome Data Analysis: from raw reads to community analyses

F1000Research, 5, 1492.

By: B. Callahan, K. Sankaran*, J. Fukuyama*, P. McMurdie* & S. Holmes*

Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

DADA2: High-resolution sample inference from Illumina amplicon data

Nature Methods, 13(7), 581–583.

By: B. Callahan, P. McMurdie*, M. Rosen*, A. Han*, A. Johnson* & S. Holmes*

Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea

Nature Communications, 7(1), 10516.

By: E. Bik*, E. Costello*, A. Switzer*, B. Callahan, S. Holmes*, R. Wells*, K. Carlin*, E. Jensen*, S. Venn-Watson*, D. Relman*

Sources: Crossref, ORCID
Added: July 21, 2019

2016 journal article

Reproducible research workflow in R for the analysis of personalized human microbiome data

Pacific Symposium on Biocomputing, 21, 183–194.

By: B. Callahan, D. Proctor, D. Relman, J. Fukuyama & S. Holmes

Source: NC State University Libraries
Added: July 11, 2019

2016 conference paper

Reproducible research workflow in R for the analysis of personalized human microbiome data

Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 21, 183.

By: B. Callahan, D. Proctor, D. Relman, J. Fukuyama & S. Holmes

Event: NIH Public Access

Source: ORCID
Added: August 21, 2019

2015 journal article

Temporal and spatial variation of the human microbiota during pregnancy

Proceedings of the National Academy of Sciences, 112(35), 11060–11065.

By: D. DiGiulio*, B. Callahan, P. McMurdie*, E. Costello*, D. Lyell*, A. Robaczewska*, C. Sun*, D. Goltsman* ...

Source: Crossref
Added: July 21, 2019

2015 journal article

Temporal and spatial variation of the human microbiota during pregnancy

Proceedings of the National Academy of Sciences, 112(35), 11060–11065.

By: D. DiGiulio, B. Callahan, P. McMurdie, E. Costello, D. Lyell, A. Robaczewska, C. Sun, D. Goltsman ...

Source: ORCID
Added: August 21, 2019

2014 journal article

Rapid evolution of adaptive niche construction in experimental microbial populations

Evolution, 68(11), 3307–3316.

By: B. Callahan, T. Fukami* & D. Fisher*

Sources: Crossref, ORCID
Added: July 21, 2019

2013 journal article

Evolutionary dynamics and information hierarchies in biological systems

Annals of the New York Academy of Sciences, 1305(1), 1–17.

By: S. Walker*, B. Callahan, G. Arya*, J. Barry*, T. Bhattacharya*, S. Grigoryev*, M. Pellegrini*, K. Rippe*, S. Rosenberg*

Sources: Crossref, ORCID
Added: July 21, 2019

2012 journal article

Denoising PCR-amplified metagenome data

BMC Bioinformatics, 13(1), 283.

By: M. Rosen, B. Callahan, D. Fisher & S. Holmes

Sources: NC State University Libraries, ORCID
Added: July 28, 2019

2012 journal article

The length scale of selection in protein evolution

Fly, 6(1), 16–20.

By: B. Callahan

Sources: Crossref, ORCID
Added: July 21, 2019

2011 journal article

Correlated Evolution of Nearby Residues in Drosophilid Proteins

PLoS Genetics, 7(2), e1001315.

By: B. Callahan, R. Neher, D. Bachtrog*, P. Andolfatto* & B. Shraiman*

Ed(s): G. McVean

Sources: Crossref, ORCID
Added: July 28, 2019

2011 journal article

Heterozygote advantage as a natural consequence of adaptation in diploids

Proceedings of the National Academy of Sciences, 108(51), 20666–20671.

By: D. Sellis*, B. Callahan, D. Petrov & P. Messer

Sources: Crossref, ORCID
Added: July 21, 2019

2009 journal article

Emergent gene order in a model of modular polyketide synthases

Proceedings of the National Academy of Sciences, 106(46), 19410–19415.

By: B. Callahan, M. Thattai* & B. Shraiman*

Sources: Crossref, ORCID
Added: July 28, 2019

2009 thesis

Evolution on an interacting fitness landscape: The effects of the interplay of epistasis and recombination on genetic structure

University of California, Santa Barbara.

By: B. Callahan

Source: ORCID
Added: August 21, 2019

2003 journal article

Exploring the Interplay between Topology and Secondary Structural Formation in the Protein Folding Problem

The Journal of Physical Chemistry B, 107(40), 11193–11200.

By: M. Cheung*, J. Finke*, B. Callahan & J. Onuchic*

Sources: Crossref, ORCID
Added: July 28, 2019

Employment

2017 - present

NC State University, College of Veterinary Medicine Raleigh, NC, US
Assistant Professor Population Health & Pathobiology

Education

2003 - 2009

University of California, Santa Barbara Santa Barbara, CA, US
Ph.D. Physics

1998 - 2002

Iowa State University Ames, IA, US
Bachelors of Science Physics, Math