Works (6)
Updated: July 5th, 2023 15:51
2011 journal article
Comparative Genomics of Duplicate gamma-Glutamyl Transferase Genes in Teleosts: Medaka (Oryzias latipes), Stickleback (Gasterosteus aculeatus), Green Spotted Pufferfish (Tetraodon nigroviridis), Fugu (Takifugu rubripes), and Zebrafish (Danio rerio)
JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION, 318B(1), 35–49.
MeSH headings : Amino Acid Sequence; Animals; Female; Fishes / classification; Fishes / genetics; Gene Expression Profiling; Gene Expression Regulation, Developmental; Genes, Duplicate / genetics; Genomics; Larva; Male; Molecular Sequence Data; Phylogeny; Sequence Alignment; Synteny; gamma-Glutamyltransferase / chemistry; gamma-Glutamyltransferase / genetics
TL;DR:
Examination of multiple paralogous genes of γ-glutamyl transferase (GGT) in several distantly related teleost species including medaka, stickleback, green spotted pufferfish, fugu, and zebrafish demonstrates that multiple GGT genes have been retained within teleost genomes.
(via Semantic Scholar)
open access via europepmc.org (repository)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2009 journal article
Improving phylogenetic analyses by incorporating additional information from genetic sequence databases
BIOINFORMATICS, 25(19), 2530–2536.
MeSH headings : Algorithms; Computational Biology / methods; Databases, Genetic; Markov Chains; Phylogeny; Sequence Alignment
TL;DR:
A fully Bayesian semiparametric hierarchical model is constructed using hierarchical random effect models that combine additional datasets whose parameters are not of direct interest but are similar to the analysis of interest.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Reconstructing ancestral ranges in historical biogeography: properties and prospects
JOURNAL OF SYSTEMATICS AND EVOLUTION, 47(5), 369–382.
author keywords: allopatry; ancestral range; ancestral state reconstruction; biogeography; dispersal; historical biogeography; review; speciation; statistics; vicariance
TL;DR:
It is explored how the form of allowed ancestral ranges and allowed transitions can both affect the outcome of ancestral range estimation and some promising avenues for future work in the development of model‐based approaches to biogeographic analysis are mentioned.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 363(1512), 3931–3939.
author keywords: variable-length Markov model; profile hidden Markov model; insertion-deletion model; scaled selection coefficient; fitness; Pfam
MeSH headings : Computer Simulation; DNA / genetics; Evolution, Molecular; Genetics, Population; INDEL Mutation / genetics; Markov Chains; Models, Genetic; Population Density; Proteins / genetics; Selection, Genetic
TL;DR:
This work explores how to construct time-reversible evolutionary models that yield stationary distributions of sequences that match given target distributions, and introduces an insertion–deletion model that describes selectively neutral evolutionary changes to DNA.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Incorporating indel information into phylogeny estimation for rapidly emerging pathogens
BMC Evolutionary Biology, 7.
Source: NC State University Libraries
Added: August 6, 2018
2006 journal article
BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny
Bioinformatics, 22(16), 2047–2048.
Source: NC State University Libraries
Added: August 6, 2018
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