Works (79)

Updated: July 20th, 2023 21:16

2021 journal article

Toward genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles

G3-GENES GENOMES GENETICS, 11(2).

By: O. Kranse*, H. Beasley*, S. Adams*, A. Pires-daSilva*, C. Bell*, C. Lilley*, P. Urwin*, D. Bird n ...

author keywords: plant-parasitic nematodes; transient expression; genetic modification; lipofection; transformation; germline
MeSH headings : Animals; Arabidopsis / genetics; Male; Plant Diseases; RNA Interference; RNA, Messenger; Tylenchoidea / genetics
Sources: Web Of Science, ORCID
Added: June 10, 2021

2020 journal article

A Single, Shared Triploidy in Three Species of Parasitic Nematodes

G3-GENES GENOMES GENETICS, 10(1), 225–233.

By: A. Schoonmaker*, Y. Hao*, D. Bird* & G. Conant n

author keywords: polyploidy; evolutionary model; root-knot nematode
MeSH headings : Animals; Evolution, Molecular; Genome, Helminth; Phylogeny; Triploidy; Tylenchoidea / classification; Tylenchoidea / genetics
Sources: Web Of Science, ORCID
Added: January 21, 2020

2020 journal article

Bacterial Community Structure Dynamics in Meloidogyne incognita-Infected Roots and Its Role in Worm-Microbiome Interactions

MSPHERE, 5(4).

By: T. Yergaliyev*, R. Alexander-Shani*, H. Dimerets*, S. Pivonia*, D. Bird n, S. Rachmilevitch*, A. Szitenberg*

author keywords: Meloidogyne incognita; bacterial succession; microbiome; plant-microbe interactions; root knot nematode
MeSH headings : Animals; Bacteria / classification; Bacteria / metabolism; DNA Barcoding, Taxonomic; Genetic Variation; Host Microbial Interactions; Microbiota; Phylogeny; Plant Roots / microbiology; Plant Roots / parasitology; RNA, Ribosomal, 16S / genetics; Rhizosphere; Soil; Soil Microbiology; Tylenchoidea / microbiology; Tylenchoidea / physiology
Sources: Web Of Science, ORCID
Added: September 28, 2020

2020 journal article

Infection by cyst nematodes induces rapid remodelling of developing xylem vessels in wheat roots

SCIENTIFIC REPORTS, 10(1).

MeSH headings : Animals; Cell Wall / metabolism; Cysts / metabolism; Gene Expression Regulation, Plant / genetics; Giant Cells / cytology; Infections; Microscopy, Confocal / methods; Nematoda / metabolism; Nematode Infections / metabolism; Nematode Infections / physiopathology; Plant Diseases / parasitology; Plant Roots / metabolism; Plant Roots / parasitology; Triticum / metabolism; Triticum / parasitology; Tylenchoidea / parasitology; Tylenchoidea / physiology; Xylem / cytology
Sources: Web Of Science, ORCID
Added: July 20, 2020

2018 journal article

Identification of Cytauxzoon felis antigens via protein microarray and assessment of expression library immunization against cytauxzoonosis

CLINICAL PROTEOMICS, 15(1).

By: M. Schreeg n, H. Marr n, J. Tarigo n, M. Sherrill*, H. Outi*, E. Scholl n, D. Bird n, A. Vigil* ...

author keywords: Cytauxzoonosis; Cytauxzoon felis; Expression library immunization; Protein microarray; Piroplasmid; Vaccine
Sources: Web Of Science, ORCID
Added: January 14, 2019

2017 journal article

Disparate gain and loss of parasitic abilities among nematode lineages

PLOS ONE, 12(9).

By: M. Holterman*, A. Karegar*, P. Mooijman*, H. Megen*, S. Elsen*, M. Vervoort*, C. Quist*, G. Karssen ...

MeSH headings : Animals; Evolution, Molecular; Host-Parasite Interactions; Nematoda / classification; Nematoda / physiology; Nematoda / virology; Phylogeny; Plants / microbiology; Plants / parasitology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Networks Underpinning Symbiosis Revealed Through Cross-Species eQTL Mapping

Genetics, 206(4), 2175–2184.

By: Y. Guo n, S. Fudali n, J. Gimeno n, P. DiGennaro n, S. Chang n, V. Williamson*, D. Bird n, D. Nielsen n

author keywords: transspecies; trans-eQTL; host-pathogen interaction; symbiosis; RNA-Seq
MeSH headings : Animals; Chromosome Mapping / methods; Gene Regulatory Networks; Genetic Pleiotropy; Helminth Proteins / genetics; Helminth Proteins / metabolism; Medicago / genetics; Medicago / parasitology; Plant Proteins / genetics; Plant Proteins / metabolism; Polymorphism, Genetic; Quantitative Trait Loci; Symbiosis / genetics; Transcription Factors / genetics; Transcription Factors / metabolism; Tylenchoidea / genetics; Tylenchoidea / pathogenicity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements

GENOME BIOLOGY AND EVOLUTION, 8(9), 2964–2978.

author keywords: nematoda; transposable elements evolution; RNA interference; mating system; parasitism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Mitochondrial Genome Sequences and Structures Aid in the Resolution of Piroplasmida phylogeny

PLOS ONE, 11(11).

By: M. Schreeg n, H. Marr n, J. Tarigo n, L. Cohn*, D. Bird n, E. Scholl n, M. Levy n, B. Wiegmann n, A. Birkenheuer n

MeSH headings : DNA, Protozoan / genetics; Genome, Mitochondrial; Humans; Phylogeny; Piroplasmida / classification; Piroplasmida / genetics; Protozoan Infections / parasitology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

PCR amplification of a multi-copy mitochondrial gene (cox3) improves detection of Cytauxzoon felis infection as compared to a ribosomal gene (18S)

VETERINARY PARASITOLOGY, 225, 123–130.

By: M. Schreeg n, H. Marr n, E. Griffith n, J. Tarigo n, D. Bird n, M. Reichard*, L. Cohn*, M. Levy n, A. Birkenheuer n

author keywords: Cytauxzoonosis; Cytochrome c oxidase; Piroplasmosis; Mitochondria; Feline; Molecular diagnostic assays
MeSH headings : Animals; Cat Diseases / diagnosis; Cats; DNA, Protozoan / blood; DNA, Protozoan / genetics; Electron Transport Complex IV / genetics; Gene Dosage; Haemosporida / genetics; Polymerase Chain Reaction / standards; Polymerase Chain Reaction / veterinary; Protozoan Infections, Animal / diagnosis; RNA, Ribosomal, 18S / genetics; Sensitivity and Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 book

Exploiting solved genomes of plant-parasitic nematodes to understand parasitism

In Advances in Botanical Research (Vol. 73, pp. 241–258).

By: D. Bird n, V. Williamson* & C. Opperman n

Source: ORCID
Added: January 30, 2020

2015 journal article

Signatures of adaptation to plant parasitism in nematode genomes

Parasitology, 142(S1), S71–S84.

author keywords: nematodes; genomes; plant parasitism; adaptation; convergence
MeSH headings : Adaptation, Physiological; Animals; Genomics; Host-Parasite Interactions; Nematoda / genetics; Nematoda / physiology; Phylogeny; Plants / parasitology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

The plant parasite Pratylenchus coffeae carries a minimal nematode genome

NEMATOLOGY, 17(6), 621–637.

By: M. Burke n, E. Scholl n, D. Bird n, J. Schaff n, S. Colman*, R. Crowell*, S. Diener*, O. Gordon* ...

author keywords: Caenorhabditis elegans; lesion nematode; Meloidogyne hapla; migratory endoparasitic nematodes; nematode evolution; protein encoding genes
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

A Novel Candidate Vaccine for Cytauxzoonosis Inferred from Comparative Apicomplexan Genomics

PLOS ONE, 8(8).

By: J. Tarigo n, E. Scholl n, D. Bird n, C. Brown*, L. Cohn*, G. Dean n, M. Levy n, D. Doolan* ...

MeSH headings : Animals; Antigens, Protozoan / genetics; Antigens, Protozoan / immunology; Cat Diseases / immunology; Cat Diseases / parasitology; Cat Diseases / prevention & control; Cats; Cattle; Conserved Sequence; Genome, Protozoan; Genomics; Immune Sera / immunology; Piroplasmida / genetics; Piroplasmida / immunology; Protozoan Infections, Animal / immunology; Protozoan Infections, Animal / parasitology; Protozoan Infections, Animal / prevention & control; Protozoan Proteins / genetics; Protozoan Proteins / immunology; Protozoan Vaccines / genetics; Protozoan Vaccines / immunology; Recombinant Proteins / genetics; Recombinant Proteins / immunology; Synteny; Theileria parva / genetics; Theileria parva / immunology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Solution NMR studies of the plant peptide hormone CEP inform function

FEBS Letters, 587(24), 3979–3985.

By: B. Bobay, P. Digennaro, E. Scholl, N. Imin, M. Djordjevic & D. McK Bird

author keywords: NMR; Molecular dynamic; CEP; Root-knot nematode; Peptide; CLE; Meloidogyne
MeSH headings : Amino Acid Sequence; Animals; Genome, Plant / physiology; Host-Parasite Interactions / physiology; Models, Molecular; Molecular Dynamics Simulation; Molecular Mimicry / physiology; Molecular Sequence Data; Nuclear Magnetic Resonance, Biomolecular; Plant Diseases / genetics; Plant Diseases / parasitology; Plant Growth Regulators / chemistry; Plant Growth Regulators / physiology; Plants / genetics; Plants / metabolism; Root Nodules, Plant / metabolism; Root Nodules, Plant / parasitology; Sequence Homology, Amino Acid; Tylenchoidea / genetics; Tylenchoidea / metabolism
Source: ORCID
Added: January 30, 2020

2012 journal article

A sequence-anchored linkage map of the plant-parasitic nematode meloidogyne hapla reveals exceptionally high genome-wide recombination

G3: Genes, Genomes, Genetics, 2(7), 815–824.

By: V. Thomas*, S. Fudali*, J. Schaff*, Q. Liu*, E. Scholl*, C. Opperman*, D. Bird n, V. Williamson*

author keywords: root-knot nematode; SNP; integrated map
MeSH headings : Amplified Fragment Length Polymorphism Analysis; Animals; Cellulase / classification; Chromosome Mapping; Contig Mapping; Crosses, Genetic; Genetic Linkage; Genetic Variation; Genome, Helminth; Genome, Plant; Genotype; Meiosis; Phylogeny; Plants / genetics; Plants / parasitology; Polymorphism, Single Nucleotide; Polysaccharide-Lyases / classification; Recombination, Genetic; Tylenchoidea / genetics
Source: ORCID
Added: January 30, 2020

2011 journal article

Abstracts of NEMASYM: The Third Nematode-Bacteria Symbioses Research Coordination Network Meeting

Symbiosis, 55(3), 97–109.

By: S. Stock*, D. Bird n, E. Ghedin* & H. Goodrich-Blair*

Sources: Crossref, ORCID
Added: February 12, 2020

2011 article

Computational and phylogenetic validation of nematode horizontal gene transfer

Scholl, E. H., & Bird, D. M. K. (2011, February 22). BMC BIOLOGY, Vol. 9.

By: E. Scholl n & D. Bird n

MeSH headings : Animals; Cellulase / genetics; Evolution, Molecular; Gene Transfer, Horizontal; Genes, Helminth; Molecular Sequence Data; Nematoda / classification; Nematoda / genetics; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

RNAi Effector Diversity in Nematodes

PLOS NEGLECTED TROPICAL DISEASES, 5(6).

By: J. Dalzell*, P. McVeigh*, N. Warnock*, M. Mitreva*, D. Bird n, P. Abad*, C. Fleming*, T. Day* ...

MeSH headings : Animals; Conserved Sequence; Gene Expression Profiling; Helminth Proteins / biosynthesis; Helminth Proteins / genetics; Nematoda / genetics; RNA Interference
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism

Journal of Proteome Research, 9(10), 5370–5381.

By: F. Mbeunkui n, E. Scholl n, C. Opperman n, M. Goshe n & D. Bird n

author keywords: LC/MSE; plant-parasite; nematode; data-independent acquisition; computational proteome
MeSH headings : Animals; Chromatography, Liquid; Computational Biology / methods; Databases, Protein; Genome, Helminth / genetics; Helminth Proteins / genetics; Helminth Proteins / metabolism; Humans; Internet; Plant Roots / parasitology; Proteomics / methods; Tandem Mass Spectrometry; Tylenchoidea / genetics; Tylenchoidea / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2010 review

Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

[Review of ]. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 74(4), 479–503.

By: T. Torto-Alalibo*, C. Collmer*, M. Gwinn-Giglio*, M. Lindeberg*, S. Meng n, M. Chibucos*, T. Tseng*, J. Lomax* ...

MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Bacterial Physiological Phenomena; Cell Adhesion; Computational Biology / methods; Fungi / genetics; Fungi / metabolism; Fungi / physiology; Host-Pathogen Interactions / genetics; Host-Pathogen Interactions / immunology; Plants / immunology; Plants / microbiology; Protein Transport; Symbiosis / genetics; Symbiosis / immunology; Virulence Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 review

Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene Ontology

[Review of ]. BMC MICROBIOLOGY, 9(SUPPL. 1).

By: T. Torto-Alalibo*, C. Collmer*, M. Lindeberg*, D. Bird n, A. Collmer* & B. Tyler*

MeSH headings : Animals; Bacteria / metabolism; Biological Transport; Fungi / metabolism; Host-Pathogen Interactions; Nematoda / metabolism; Oomycetes / metabolism; Plant Diseases / microbiology; Plants / metabolism; Plants / microbiology; Symbiosis; Terminology as Topic; Vocabulary, Controlled
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 book

Genomic analysis of the root-knot nematode genome

In Plant Cell Monographs (Vol. 15, pp. 221–237).

By: C. Opperman n, D. Bird n & J. Schaff n

Source: ORCID
Added: January 30, 2020

2009 book

Plant infection by root-knot nematode

In Plant Cell Monographs (Vol. 15, pp. 1–13).

By: D. Bird n, C. Opperman n & V. Williamson*

Source: ORCID
Added: January 30, 2020

2009 article

The Genomes of Root-Knot Nematodes

ANNUAL REVIEW OF PHYTOPATHOLOGY, Vol. 47, pp. 333–351.

By: D. Bird n, V. Williamson*, P. Abad, J. McCarter*, E. Danchin, P. Castagnone-Sereno, C. Opperman n

author keywords: asexual reproduction; genetics; horizontal gene transfer; Meloidogyne; plant parasite
MeSH headings : Animals; Biological Evolution; Gene Transfer, Horizontal; Genome, Helminth; Nematoda / genetics; Plant Diseases / genetics; Plant Roots / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 review

The secret(ion) life of worms

[Review of ]. GENOME BIOLOGY, 10(1).

By: D. Bird n & C. Opperman n

MeSH headings : Animals; Helminth Proteins / analysis; Helminth Proteins / metabolism; Host-Parasite Interactions / immunology; Humans; Nematoda / chemistry; Nematoda / immunology; Nematoda / metabolism; Plants / immunology; Plants / parasitology; Proteomics
Source: Web Of Science
Added: August 6, 2018

2009 journal article

The secret(ion) life of worms.

Genome Biology, 10(1), 205. http://www.scopus.com/inward/record.url?eid=2-s2.0-69449107507&partnerID=MN8TOARS

By: D. Bird & C. Opperman

Source: ORCID
Added: January 30, 2020

2008 journal article

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

Plant Journal, 56(5), 840–854.

By: J. Schaff, F. Mbeunkui, K. Blackburn, D. Bird & M. Goshe

Source: NC State University Libraries
Added: August 6, 2018

2008 journal article

SILIP: A novel stable isotope labeling method for in planta quantitative proteomic analysis

Plant Journal, 56(5), 840–854.

By: J. Schaff n, F. Mbeunkui n, K. Blackburn n, D. Bird n & M. Goshe n

author keywords: plant proteomics; quantitative analysis; mass spectrometry; liquid chromatography; isotope-coded; isotope ratio
MeSH headings : Chromatography, Liquid; Isotope Labeling / methods; Solanum lycopersicum / metabolism; Nitrogen / metabolism; Nitrogen Isotopes / metabolism; Phenotype; Plant Proteins / metabolism; Proteomics / methods; Soil; Tandem Mass Spectrometry
Source: ORCID
Added: January 30, 2020

2008 journal article

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(39), 14802–14807.

By: C. Opperman n, D. Bird n, V. Williamson*, D. Rokhsar*, M. Burke n, J. Cohn n, J. Cromer n, S. Diener n ...

author keywords: compaction; dauer; development; horizontal gene transfer; gene
MeSH headings : Animals; Base Sequence; Caenorhabditis elegans / genetics; Chromosome Mapping; Evolution, Molecular; Gene Duplication; Gene Transfer, Horizontal; Genome, Helminth; Host-Parasite Interactions / genetics; Molecular Sequence Data; Multigene Family; Operon; Phylogeny; Plants / parasitology; Synteny; Tylenchoidea / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Comprehensive Transcriptome Profiling in Tomato Reveals a Role for Glycosyltransferase in Mi-Mediated Nematode Resistance

Plant Physiology, 144(2), 1079–1092.

By: J. Schaff n, D. Nielsen n, C. Smith n, E. Scholl n & D. Bird n

MeSH headings : Animals; Feeding Behavior / physiology; Gene Expression; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Silencing; Genomics; Glycosyltransferases / metabolism; Host-Parasite Interactions / physiology; Solanum lycopersicum / enzymology; Solanum lycopersicum / genetics; Solanum lycopersicum / parasitology; Oligonucleotide Array Sequence Analysis; Plant Roots / enzymology; Plant Roots / metabolism; Plant Roots / parasitology; Reproduction / physiology; Tylenchoidea / physiology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2007 journal article

Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines

GENOME BIOLOGY, 8(10).

By: A. Elling*, M. Mitreva*, J. Recknor*, X. Gai*, J. Martin*, T. Maier*, J. McDermott*, T. Hewezi* ...

MeSH headings : Animals; Caenorhabditis elegans / metabolism; Computational Biology; Expressed Sequence Tags; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Library; Larva / metabolism; Oligonucleotide Array Sequence Analysis; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, DNA; Soybeans / parasitology; Species Specificity; Tylenchoidea / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

A method for generating Meloidogyne incognita males

Journal of Nematology, 38(2), 192–194. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750134280&partnerID=MN8TOARS

By: D. Snyder, C. Opperman & D. Bird

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2006 journal article

A method for isolation of Pasteuria penetrans endospores for bioassay and genomic studies

Journal of Nematology, 38(1), 165–167. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248330929&partnerID=MN8TOARS

By: J. Waterman, D. Bird & C. Opperman

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2006 journal article

A white paper on nematode comparative genomics

Journal of Nematology, 37(4), 408–416.

By: D. Bird, M. Blaxter, J. McCarter, M. Mitreva, P. Sternberg & W. Thomas

Source: NC State University Libraries
Added: August 6, 2018

2006 journal article

Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii

Parasitology Research, 98(5), 414–424.

MeSH headings : Animals; Computational Biology / methods; Contig Mapping; DNA, Helminth / chemistry; DNA, Helminth / genetics; Expressed Sequence Tags; Gene Library; Glycoside Hydrolases / chemistry; Glycoside Hydrolases / genetics; Helminth Proteins / genetics; Plants / parasitology; Protein Sorting Signals / genetics; Protein Structure, Tertiary / genetics; Tylenchoidea / genetics
Source: ORCID
Added: January 30, 2020

2006 journal article

Nematode gene sequences: Update for December 2005

Journal of Nematology, 37(4), 417–421.

By: J. McCarter, D. Bird & M. Mitreva

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

A white paper on nematode comparative genomics

Journal of Nematology, 37(4), 408–416. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744994353&partnerID=MN8TOARS

By: D. Bird, M. Blaxter, J. McCarter, M. Mitreva, P. Sternberg & W. Thomas

Source: ORCID
Added: January 30, 2020

2005 review

Comparative genomics of nematodes

[Review of ]. TRENDS IN GENETICS, 21(10), 573–581.

By: M. Mitreva*, M. Blaxter*, D. Bird n & J. McCarter*

MeSH headings : Animals; Chromosome Aberrations; Databases, Genetic; Evolution, Molecular; Gene Transfer, Horizontal / genetics; Genetic Variation; Genome / genetics; Genomics / methods; Genomics / trends; Nematoda / genetics; Phylogeny; Species Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Model systems in agriculture: Lessons from worms

Annals of Applied Biology, 146(2), 147–154.

By: D. Bird n

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2005 journal article

Nematode gene sequences: Update for December 2005

Journal of Nematology, 37(4), 417–421. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744980477&partnerID=MN8TOARS

By: J. McCarter, D. Bird & M. Mitreva

Source: ORCID
Added: January 30, 2020

2005 journal article

Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci

JOURNAL OF BACTERIOLOGY, 187(16), 5700–5708.

By: L. Charles n, I. Carbone n, K. Davies*, D. Bird n, M. Burke n, B. Kerry*, C. Opperman n

MeSH headings : Animals; Bacillus / genetics; Bacterial Proteins / genetics; Bayes Theorem; Models, Genetic; Phylogeny; Tylenchoidea / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Resolving tylenchid evolutionary relationships through multiple gene analysis derived from EST data

MOLECULAR PHYLOGENETICS AND EVOLUTION, 36(3), 536–545.

By: E. Scholl n & D. Bird n

author keywords: Bayesian; Caenorhabditis elegans; COG; cyst nematode; orthologues; root-knot nematode
MeSH headings : Animals; Evolution, Molecular; Expressed Sequence Tags; Phylogeny; Selection, Genetic; Tylenchida / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Root-knot nematodes and bacterial Nod factors elicit common signal transduction events in Lotus japonicus

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(8), 3147–3152.

By: R. Weerasinghe n, D. Bird n & N. Allen n

author keywords: cytoskeleton; NemF; rhizobia; actin; microtubule
MeSH headings : Animals; Cytoskeleton / physiology; Lipopolysaccharides / pharmacology; Lotus / physiology; Signal Transduction / physiology; Symbiosis; Tylenchoidea / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

A survey of SL1-spliced transcipts from the root-lesion nematode Pratylenchus penetrans

MOLECULAR GENETICS AND GENOMICS, 272(2), 138–148.

By: M. Mitreva*, A. Elling*, M. Dante*, A. Kloek*, A. Kalyanaraman*, S. Aluru*, S. Clifton*, D. Bird n, T. Baum*, J. McCarter*

author keywords: Pratylenchus; expressed sequence tags (ESTs); comparative genomics; gene expression; parasite
MeSH headings : Animals; Caenorhabditis elegans / genetics; DNA, Helminth / genetics; Expressed Sequence Tags; Gene Library; Gene Transfer, Horizontal; Genes, Helminth; Multigene Family; Phenotype; Plant Diseases / parasitology; Plants / parasitology; Polymerase Chain Reaction; RNA Interference; RNA, Helminth / genetics; RNA, Spliced Leader / genetics; Species Specificity; Tylenchoidea / genetics; Tylenchoidea / growth & development; Tylenchoidea / pathogenicity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

Cytokinins play opposite roles in lateral root formation, and nematode and Rhizobial symbioses

PLANT JOURNAL, 38(2), 203–214.

By: D. Lohar n, J. Schaff n, J. Laskey*, J. Kieber*, K. Bilyeu* & D. Bird n

author keywords: cytokinins; lateral root; symbiosis; cytokinin oxidase; ARR; Lotus japonicus
MeSH headings : Animals; Arabidopsis / genetics; Base Sequence; Cytokinins / physiology; DNA, Plant / genetics; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; Genes, Reporter; Glucuronidase / genetics; Lotus / genetics; Lotus / growth & development; Lotus / microbiology; Lotus / parasitology; Oxidoreductases / genetics; Plant Diseases / genetics; Plant Diseases / parasitology; Plant Roots / growth & development; Plants, Genetically Modified; Promoter Regions, Genetic; Rhizobium / physiology; Symbiosis / physiology; Tylenchoidea / pathogenicity; Tylenchoidea / physiology; Zea mays / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

High society (of nematologists)

Genome Biology, 5(11).

MeSH headings : Animals; Bacteria / metabolism; Caenorhabditis / genetics; Caenorhabditis / metabolism; Caenorhabditis / microbiology; Caenorhabditis elegans / genetics; Caenorhabditis elegans / metabolism; Caenorhabditis elegans / microbiology; Chorismate Mutase / genetics; Cytoskeleton / chemistry; Evolution, Molecular; Helminth Proteins / metabolism; Microscopy, Confocal / methods; Nematoda / genetics; Nematoda / metabolism; Nematoda / microbiology; Phylogeny; Plant Cells; Plants / chemistry; Plants / metabolism; Plants / parasitology; United States
Source: ORCID
Added: January 30, 2020

2004 review

Signaling between nematodes and plants

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 7(4), 372–376.

By: D. Bird n

MeSH headings : Animals; Gene Expression Regulation, Plant; Host-Parasite Interactions; Nematoda / genetics; Nematoda / metabolism; Nematoda / pathogenicity; Plant Roots / metabolism; Plant Roots / parasitology; Plants / metabolism; Plants / parasitology; Signal Transduction
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Analysis and functional classification of transcripts from the nematode Meloidogyne incognita.

Genome Biology, 4(4), R26–1. http://www.scopus.com/inward/record.url?eid=2-s2.0-9444261296&partnerID=MN8TOARS

By: J. McCarter, M. Mitreva, J. Martin, M. Dante, T. Wylie, U. Rao, D. Pape, Y. Bowers ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2003 review

Are roots special? Nematodes have their say

[Review of ]. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY, 62(2), 115–123.

By: D. Bird n & I. Kaloshian*

author keywords: Caenorhabditis elegans; genomics; horizontal-gene transfer; Macrosiphum euphorbiae; Meloidogyne spp; rhizobia
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach.

Genome Biology, 4(6), R39–1. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038576862&partnerID=MN8TOARS

By: E. Scholl, J. Thorne, J. McCarter & D. Bird

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2003 review

Interactions between bacteria and plant-parasitic nematodes: now and then

[Review of ]. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 33(11), 1269–1276.

By: D. Bird n, C. Opperman n & K. Davies*

author keywords: horizontal gene transfer; Meloidogyne; Pasteuria penetrans; rhizobia; root-knot nematode; synteny
MeSH headings : Animals; Bacillus / genetics; Bacillus / physiology; Gene Transfer, Horizontal; Genes, Bacterial; Genes, Helminth; Life Cycle Stages; Plants / parasitology; Rhizobiaceae / genetics; Rhizobiaceae / physiology; Synteny; Tylenchoidea / genetics; Tylenchoidea / parasitology; Tylenchoidea / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Lotus japonicus: A new model to study root-parasitic nematodes

PLANT AND CELL PHYSIOLOGY, 44(11), 1176–1184.

By: D. Lohar n & D. Bird n

author keywords: CLAVATA1-like receptor kinase; har1; Heterodera glycines; hypersensitive response; Lotus japonicus; Meloidogyne spp.
MeSH headings : Animals; Lotus / parasitology; Models, Biological; Nematoda / physiology; Plant Roots / parasitology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Molecular signals and receptors: Controlling rhizosphere interactions between plants and other organisms

ECOLOGY, 84(4), 858–868.

By: A. Hirsch*, W. Bauer*, D. Bird n, J. Cullimore*, B. Tyler & J. Yoder*

author keywords: parasitism; pathogenesis; predation; quorum sensing; receptors; rhizosphere interactions; signals; symbiosis
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Nematode gene sequences: Update for December 2003

Journal of Nematology, 35(4), 465–469. http://www.scopus.com/inward/record.url?eid=2-s2.0-1842510703&partnerID=MN8TOARS

By: J. McCarter, M. Mitreva, S. Clifton, D. Bird & R. Waterston

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2002 journal article

Nematode gene sequences, update for June 2002

Journal of Nematology, 34(2), 71–74. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036618995&partnerID=MN8TOARS

By: J. McCarter, S. Clifton, D. Bird & R. Waterston

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2002 journal article

Recovery and sequence validation of the histological signal following in situ RT-PCR localization of plant gene transcripts

PLANT MOLECULAR BIOLOGY REPORTER, 20(4), 391–397.

By: H. Koltai* & D. Bird n

author keywords: functional genomics; in situ RT-PCR; Medicago truncatula; nodule; signal specificity; transcription
Sources: Web Of Science, ORCID
Added: August 6, 2018

2001 journal article

Cytochrome c is not essential for viability of the fungus Aspergillus nidulans

Molecular Genetics and Genomics, 266(1), 48–55.

By: R. Bradshaw*, D. Bird*, S. Brown*, R. Gardiner* & P. Hirst*

author keywords: cytochrome c; Aspergillus; gene replacement; alternative respiration
MeSH headings : Aspergillus nidulans / enzymology; Aspergillus nidulans / genetics; Aspergillus nidulans / growth & development; Aspergillus nidulans / metabolism; Cytochrome c Group / metabolism; Diploidy; Ethanol / metabolism; Fermentation; Genes, Fungal; Mutation; Oxygen / metabolism; Spores, Fungal
Source: ORCID
Added: January 30, 2020

2001 journal article

Overlapping plant signal transduction pathways induced by a parasitic nematode and a rhizobial endosymbiont

MOLECULAR PLANT-MICROBE INTERACTIONS, 14(10), 1168–1177.

By: H. Koltai*, M. Dhandaydham, C. Opperman*, J. Thomas* & D. Bird*

author keywords: cytokinin; Meloidogyne incognita; Nod factor; PHANTASTICA; polar auxin flow; rough sheath2
MeSH headings : Amino Acid Sequence; Animals; Cell Cycle Proteins / genetics; Cell Cycle Proteins / physiology; Cell Size; DNA-Binding Proteins / genetics; DNA-Binding Proteins / physiology; Gene Expression Regulation, Plant; Growth Substances / genetics; Growth Substances / physiology; Homeodomain Proteins / genetics; Homeodomain Proteins / physiology; Host-Parasite Interactions; Humans; Medicago / genetics; Medicago / microbiology; Medicago / parasitology; Mitosis; Molecular Sequence Data; Nematoda / genetics; Nematoda / physiology; Nuclear Proteins / genetics; Nuclear Proteins / physiology; Plant Diseases / microbiology; Plant Diseases / parasitology; Plant Proteins / genetics; Plant Proteins / physiology; Plant Roots / genetics; Plant Roots / microbiology; Plant Roots / parasitology; Proto-Oncogene Proteins c-myb; Sequence Homology, Amino Acid; Signal Transduction / physiology; Sinorhizobium meliloti / genetics; Sinorhizobium meliloti / physiology; Symbiosis
Sources: Web Of Science, ORCID
Added: August 6, 2018

2000 journal article

Alan Francis Bird: 1928-99

Journal of Nematology, 32(1), 1–3.

By: D. Bird

Source: NC State University Libraries
Added: August 6, 2018

2000 journal article

Epistatic repression of PHANTASTICA and class 1 KNOTTED genes is uncoupled in tomato

PLANT JOURNAL, 22(5), 455–459.

By: H. Koltai n & D. Bird*

MeSH headings : Base Sequence; DNA Primers; DNA-Binding Proteins / genetics; Epistasis, Genetic; Homeodomain Proteins / genetics; Solanum lycopersicum / genetics; Molecular Sequence Data; Plant Proteins / genetics; Proto-Oncogene Proteins c-myb
Sources: Web Of Science, ORCID
Added: August 6, 2018

2000 journal article

High throughput cellular localization of specific plant mRNAs by liquid-phase in situ reverse transcription-polymerase chain reaction of tissue sections

PLANT PHYSIOLOGY, 123(4), 1203–1212.

By: H. Koltai n & D. Bird n

MeSH headings : Arabidopsis / anatomy & histology; Arabidopsis / genetics; Gene Expression Profiling / methods; Genes, Plant; Solanum lycopersicum / anatomy & histology; Solanum lycopersicum / genetics; Microscopy, Interference; RNA, Messenger / analysis; Reverse Transcriptase Polymerase Chain Reaction / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2000 journal article

Nematode gene sequences, December 2000 update

Journal of Nematology, 32(4), 331–333. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034353966&partnerID=MN8TOARS

By: J. McCarter, D. Bird, S. Clifton & R. Waterston

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2000 journal article

Plant parasitic nematodes: Habitats, hormones, and horizontally-acquired genes

Journal of Plant Growth Regulation, 19(2), 183–194. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033758702&partnerID=MN8TOARS

By: D. Bird & H. Koltai

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2000 journal article

Rapid gene discovery in plant parasitic nematodes via Expressed Sequence Tags

NEMATOLOGY, 2(7), 719–731.

author keywords: Caenorhabditis elegans; clustering; EST; Globodera; Meloidogyne; NemaGene
Sources: Web Of Science, ORCID
Added: August 6, 2018

1999 review

The Caenorhabditis elegans genome: A guide in the post genomics age

[Review of ]. ANNUAL REVIEW OF PHYTOPATHOLOGY, 37(1999), 247–265.

By: D. Bird n, C. Opperman n, S. Jones* & D. Baillie*

author keywords: genetics; Heterodera glycines; host resistance; nematode; parasites
Sources: Web Of Science, ORCID
Added: August 6, 2018

1998 journal article

Caenorhabditis elegans: A genetic guide to parasitic nematode biology

Journal of Nematology, 30(3), 299–308. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032357095&partnerID=MN8TOARS

By: D. Bird & C. Opperman

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

1998 review

The soybean cyst nematode, Heterodera glycines: a genetic model system for the study of plant-parasitic nematodes

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 1(4), 342–346.

By: C. Opperman n & D. Bird n

MeSH headings : Animals; Models, Biological; Nematoda / genetics; Nematoda / physiology; Physical Chromosome Mapping; Soybeans / genetics; Soybeans / parasitology
Sources: Web Of Science, ORCID
Added: August 6, 2018

1997 journal article

Gene targeting is locus dependent in the filamentous fungus Aspergillus nidulans

Molecular and General Genetics, 255(2), 219–225.

By: D. Bird* & R. Bradshaw

author keywords: Aspergillus nidulans; gene targeting nitrate reductase; acetamidase
MeSH headings : Amidohydrolases / genetics; Aspergillus nidulans / genetics; Aspergillus nidulans / growth & development; DNA / chemistry; DNA / genetics; DNA Damage; Nitrate Reductase; Nitrate Reductases / genetics; Plasmids / chemistry; Plasmids / genetics; Temperature; Transcription, Genetic; Transformation, Genetic
Source: ORCID
Added: January 30, 2020

1997 journal article

Promoter structure of the RNA polymerase II large subunit gene in caenorhabditis elegans and C. Briggsae

Journal of Nematology, 29(2), 144–152. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030786968&partnerID=MN8TOARS

By: D. Bird, I. Kaloshian & S. Molinari

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

1996 article

Manipulation of host gene expression by root-knot nematodes

Bird, D. M. (1996, December). JOURNAL OF PARASITOLOGY, Vol. 82, pp. 881–888.

By: D. Bird*

Sources: Web Of Science, ORCID
Added: August 6, 2018

1994 journal article

A comprehensive subtractive cDNA cloning approach to identify nematode-induced transcripts in tomato

Phytopathology, 84(3), 299–303.

By: M. Wilson, D. Bird & E. Knaap

Source: ORCID
Added: January 30, 2020

1994 journal article

A genetic nomenclature for parasitic nematodes

Journal of Nematology, 26(2), 138–143. http://www.scopus.com/inward/record.url?eid=2-s2.0-0028054366&partnerID=MN8TOARS

By: D. Bird & D. Riddle

Source: ORCID
Added: January 30, 2020

1994 journal article

DNA sequence and expression analysis of root-knot nematode-elicited giant cell transcripts

Molecular Plant-Microbe Interactions, 7(3), 419–424.

By: D. Bird* & M. Wilson

Source: ORCID
Added: January 30, 2020

1993 journal article

Rapid miniprep isolation of mitochondrial DNA from metacestodes, and free- living and parasitic nematodes

Journal of Parasitology, 79(6), 964–967.

By: J. Peloquin*, D. Bird* & E. Platzer

Source: ORCID
Added: January 30, 2020

1992 journal article

Efficient removal of hybridization signal from Southern blots probed with radiolabeled oligonucleotides

BioTechniques, 13(1), 34–36. http://www.scopus.com/inward/record.url?eid=2-s2.0-0026653183&partnerID=MN8TOARS

By: I. Kaloshian & D. Bird

Source: ORCID
Added: January 30, 2020

1992 journal article

Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes, and their deduced collagen products

Gene, 120(2), 261–266.

By: D. Bird

author keywords: RECOMBINANT DNA; NEMATODES; MORPHOGENESIS; PROTEINS; SECONDARY STRUCTURE; GENETIC MAP; MUTANT
MeSH headings : Amino Acid Sequence; Animals; Caenorhabditis elegans / genetics; Cloning, Molecular; Collagen / genetics; Genes; Introns; Molecular Sequence Data; Restriction Mapping; Sequence Homology, Amino Acid; Sequence Homology, Nucleic Acid; TATA Box
Source: ORCID
Added: January 30, 2020

1989 journal article

Molecular cloning and sequencing of ama-1, the gene encoding the largest subunit of Caenorhabditis elegans RNA polymerase II

Molecular and Cellular Biology, 9(10), 4119–4130.

By: D. Bird* & D. Riddle

Source: ORCID
Added: January 30, 2020

1988 journal article

dpy-13: A nematode collagen gene that affects body shape

Cell, 55(4), 567–576.

By: N. Mende*, D. Bird*, P. Albert* & D. Riddle*

MeSH headings : Alleles; Animals; Base Sequence; Caenorhabditis / genetics; Caenorhabditis / growth & development; Chromosome Deletion; Collagen / genetics; DNA / analysis; DNA Transposable Elements; Molecular Sequence Data; Mutation; RNA Polymerase II / genetics
Source: ORCID
Added: January 30, 2020

Employment

Updated: January 28th, 2020 12:18

1995 - present

North Carolina State University Raleigh, NC, US
Named Professor Entomology and Plant Pathology

Education

Updated: January 30th, 2020 13:08

1980 - 1984

University of Adelaide Adelaide, SA, AU
PhD Biochemistry