David M Bird

Toward genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles

G3-GENES GENOMES GENETICS, 11(2).

A Single, Shared Triploidy in Three Species of Parasitic Nematodes

G3-GENES GENOMES GENETICS, 10(1), 225–233.

Bacterial Community Structure Dynamics in Meloidogyne incognita-Infected Roots and Its Role in Worm-Microbiome Interactions

MSPHERE, 5(4).

Infection by cyst nematodes induces rapid remodelling of developing xylem vessels in wheat roots

SCIENTIFIC REPORTS, 10(1).

Identification of Cytauxzoon felis antigens via protein microarray and assessment of expression library immunization against cytauxzoonosis

Clinical Proteomics, 15(1).

Disparate gain and loss of parasitic abilities among nematode lineages

PLoS ONE, 12(9).

Networks Underpinning Symbiosis Revealed Through Cross-Species eQTL Mapping

Genetics, 206(4), 2175–2184.

Genetic drift, not life history or RNAi, determine long-Term evolution of transposable elements

Genome Biology and Evolution, 8(9), 2964–2978.

Mitochondrial genome sequences and structures aid in the resolution of Piroplasmida phylogeny

PLoS ONE, 11(11).

PCR amplification of a multi-copy mitochondrial gene (cox3) improves detection of Cytauxzoon felis infection as compared to a ribosomal gene (18S)

Veterinary Parasitology, 225, 123–130.

Exploiting solved genomes of plant-parasitic nematodes to understand parasitism

In Advances in Botanical Research (Vol. 73, pp. 241–258).

Signatures of adaptation to plant parasitism in nematode genomes

Parasitology, 142(S1), S71–S84.

The plant parasite Pratylenchus coffeae carries a minimal nematode genome

Nematology, 17(6), 621–637.

A Novel Candidate Vaccine for Cytauxzoonosis Inferred from Comparative Apicomplexan Genomics

PLoS ONE, 8(8).

Solution NMR studies of the plant peptide hormone CEP inform function

FEBS Letters, 587(24), 3979–3985.

A sequence-anchored linkage map of the plant-parasitic nematode meloidogyne hapla reveals exceptionally high genome-wide recombination

G3: Genes, Genomes, Genetics, 2(7), 815–824.

Abstracts of NEMASYM: The Third Nematode-Bacteria Symbioses Research Coordination Network Meeting

Symbiosis, 55(3), 97–109.

Computational and phylogenetic validation of nematode horizontal gene transfer

BMC Biology, 9.

RNAi effector diversity in nematodes

PLoS Neglected Tropical Diseases, 5(6).

Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism

Journal of Proteome Research, 9(10), 5370–5381.

Unifying themes in microbial associations with animal and plant hosts described using the gene ontology

Microbiology and Molecular Biology Reviews, 74(4), 479–503.

Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene Ontology

BMC Microbiology, 9(SUPPL. 1).

Genomic analysis of the root-knot nematode genome

In Plant Cell Monographs (Vol. 15, pp. 221–237).

Plant infection by root-knot nematode

In Plant Cell Monographs (Vol. 15, pp. 1–13).

The genomes of root-knot nematodes

In Annual Review of Phytopathology (Vol. 47, pp. 333–351).

The secret(ion) life of worms

[Review of ]. Genome Biology, 10(1).

The secret(ion) life of worms.

Genome Biology, 10(1), 205. http://www.scopus.com/inward/record.url?eid=2-s2.0-69449107507&partnerID=MN8TOARS

A sequence-anchored genetic linkage map for the moss, Physcomitrella patens

Plant Journal, 56(5), 840–854.

SILIP: A novel stable isotope labeling method for in planta quantitative proteomic analysis

Plant Journal, 56(5), 840–854.

Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism

Proceedings of the National Academy of Sciences of the United States of America, 105(39), 14802–14807.

Comprehensive Transcriptome Profiling in Tomato Reveals a Role for Glycosyltransferase in Mi-Mediated Nematode Resistance

Plant Physiology, 144(2), 1079–1092.

Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines

Genome Biology, 8(10).

A method for generating Meloidogyne incognita males

Journal of Nematology, 38(2), 192–194. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750134280&partnerID=MN8TOARS

A method for isolation of Pasteuria penetrans endospores for bioassay and genomic studies

Journal of Nematology, 38(1), 165–167. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248330929&partnerID=MN8TOARS

A white paper on nematode comparative genomics

Journal of Nematology, 37(4), 408–416.

Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii

Parasitology Research, 98(5), 414–424.

Nematode gene sequences: Update for December 2005

Journal of Nematology, 37(4), 417–421.

A white paper on nematode comparative genomics

Journal of Nematology, 37(4), 408–416. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744994353&partnerID=MN8TOARS

Comparative genomics of nematodes

Trends in Genetics, 21(10), 573–581.

Model systems in agriculture: Lessons from worms

Annals of Applied Biology, 146(2), 147–154.

Nematode gene sequences: Update for December 2005

Journal of Nematology, 37(4), 417–421. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744980477&partnerID=MN8TOARS

Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci

Journal of Bacteriology, 187(16), 5700–5708.

Resolving tylenchid evolutionary relationships through multiple gene analysis derived from EST data

Molecular Phylogenetics and Evolution, 36(3), 536–545.

Root-knot nematodes and bacterial Nod factors elicit common signal transduction events in Lotus japonicus

Proceedings of the National Academy of Sciences of the United States of America, 102(8), 3147–3152.

A survey of SL1-spliced transcripts from the root-lesion nematode Pratylenchus penetrans

Molecular Genetics and Genomics, 272(2), 138–148.

Cytokinins play opposite roles in lateral root formation, and nematode and Rhizobial symbioses

Plant Journal, 38(2), 203–214.

High society (of nematologists)

Genome Biology, 5(11).

Signaling between nematodes and plants.

Current Opinion in Plant Biology, 7(4), 372–376.

Analysis and functional classification of transcripts from the nematode Meloidogyne incognita.

Genome Biology, 4(4), R26–1. http://www.scopus.com/inward/record.url?eid=2-s2.0-9444261296&partnerID=MN8TOARS

Are roots special? Nematodes have their say

Physiological and Molecular Plant Pathology, 62(2), 115–123.

Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach.

Genome Biology, 4(6), R39–1. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038576862&partnerID=MN8TOARS

Interactions between bacteria and plant-parasitic nematodes: Now and then

International Journal for Parasitology, 33(11), 1269–1276.

Lotus japonicus: A New Model to Study Root-Parasitic Nematodes

Plant and Cell Physiology, 44(11), 1176–1184.

Molecular signals and receptors: Controlling rhizosphere interactions between plants and other organisms

Ecology, 84(4), 858–868.

Nematode gene sequences: Update for December 2003

Journal of Nematology, 35(4), 465–469. http://www.scopus.com/inward/record.url?eid=2-s2.0-1842510703&partnerID=MN8TOARS

Nematode gene sequences, update for June 2002

Journal of Nematology, 34(2), 71–74. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036618995&partnerID=MN8TOARS

Recovery and sequence validation of the histological signal following in situ RT-PCR localization of plant gene transcripts

Plant Molecular Biology Reporter, 20(4), 391–397.

Cytochrome c is not essential for viability of the fungus Aspergillus nidulans

Molecular Genetics and Genomics, 266(1), 48–55.

Overlapping plant signal transduction pathways induced by a parasitic nematode and a rhizobial endosymbiont

Molecular Plant-Microbe Interactions, 14(10), 1168–1177.

Alan Francis Bird: 1928-99

Journal of Nematology, 32(1), 1–3.

Epistatic repression of PHANTASTICA and class 1 KNOTTED genes is uncoupled in tomato

Plant Journal, 22(5), 455–459.

High throughput cellular localization of specific plant mRNAs by liquid-phase in situ reverse transcription-polymerase chain reaction of tissue sections

Plant Physiology, 123(4), 1203–1212.

Nematode gene sequences, December 2000 update

Journal of Nematology, 32(4), 331–333. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034353966&partnerID=MN8TOARS

Plant parasitic nematodes: Habitats, hormones, and horizontally-acquired genes

Journal of Plant Growth Regulation, 19(2), 183–194. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033758702&partnerID=MN8TOARS

Rapid gene discovery in plant parasitic nematodes via expressed sequence tags

Nematology, 2(7), 719–731.

The Caenorhabditis elegans genome: A guide in the post genomics age

Annual Review of Phytopathology, 37(1999), 247–265.

Caenorhabditis elegans: A genetic guide to parasitic nematode biology

Journal of Nematology, 30(3), 299–308. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032357095&partnerID=MN8TOARS

The soybean cyst nematode, Heterodera glycines: A genetic model system for the study of plant-parasitic nematodes

Current Opinion in Plant Biology, 1(4), 342–346.

Gene targeting is locus dependent in the filamentous fungus Aspergillus nidulans

Molecular and General Genetics, 255(2), 219–225.

Promoter structure of the RNA polymerase II large subunit gene in caenorhabditis elegans and C. Briggsae

Journal of Nematology, 29(2), 144–152. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030786968&partnerID=MN8TOARS

Manipulation of host gene expression by root-knot nematodes

Journal of Parasitology, 82(6), 881–888.

A comprehensive subtractive cDNA cloning approach to identify nematode-induced transcripts in tomato

Phytopathology, 84(3), 299–303.

A genetic nomenclature for parasitic nematodes

Journal of Nematology, 26(2), 138–143. http://www.scopus.com/inward/record.url?eid=2-s2.0-0028054366&partnerID=MN8TOARS

DNA sequence and expression analysis of root-knot nematode-elicited giant cell transcripts

Molecular Plant-Microbe Interactions, 7(3), 419–424.

Rapid miniprep isolation of mitochondrial DNA from metacestodes, and free- living and parasitic nematodes

Journal of Parasitology, 79(6), 964–967.

Efficient removal of hybridization signal from Southern blots probed with radiolabeled oligonucleotides

BioTechniques, 13(1), 34–36. http://www.scopus.com/inward/record.url?eid=2-s2.0-0026653183&partnerID=MN8TOARS

Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes, and their deduced collagen products

Gene, 120(2), 261–266.

Molecular cloning and sequencing of ama-1, the gene encoding the largest subunit of Caenorhabditis elegans RNA polymerase II

Molecular and Cellular Biology, 9(10), 4119–4130.

dpy-13: A nematode collagen gene that affects body shape

Cell, 55(4), 567–576.