Works (79)
Updated: October 28th, 2024 08:15
2021 journal article
Toward genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles
G3-GENES GENOMES GENETICS, 11(2).
author keywords: plant-parasitic nematodes; transient expression; genetic modification; lipofection; transformation; germline
MeSH headings : Animals; Arabidopsis / genetics; Male; Plant Diseases; RNA Interference; RNA, Messenger; Tylenchoidea / genetics
TL;DR:
Some of the foundational biology required to deliver a functional genetic tool kit in plant-parasitic nematodes are developed, and the gonads of male Heterodera schachtii and Meloidogyne hapla are characterised in the context of spermatogenesis.
(via Semantic Scholar)
open access via academic.oup.com (publisher PDF)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: June 10, 2021
2020 journal article
Bacterial Community Structure Dynamics in Meloidogyne incognita-Infected Roots and Its Role in Worm-Microbiome Interactions
MSPHERE, 5(4).
author keywords: Meloidogyne incognita; bacterial succession; microbiome; plant-microbe interactions; root knot nematode
MeSH headings : Animals; Bacteria / classification; Bacteria / metabolism; DNA Barcoding, Taxonomic; Genetic Variation; Host Microbial Interactions; Microbiota; Phylogeny; Plant Roots / microbiology; Plant Roots / parasitology; RNA, Ribosomal, 16S / genetics; Rhizosphere; Soil; Soil Microbiology; Tylenchoidea / microbiology; Tylenchoidea / physiology
TL;DR:
It is indicated that a structured community develops in the root, in which gall communities diverge from root segments lacking a gall, and that this structure is maintained throughout the crop season.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: September 28, 2020
2020 journal article
Infection by cyst nematodes induces rapid remodelling of developing xylem vessels in wheat roots
SCIENTIFIC REPORTS, 10(1).
MeSH headings : Animals; Cell Wall / metabolism; Cysts / metabolism; Gene Expression Regulation, Plant / genetics; Giant Cells / cytology; Infections; Microscopy, Confocal / methods; Nematoda / metabolism; Nematode Infections / metabolism; Nematode Infections / physiopathology; Plant Diseases / parasitology; Plant Roots / metabolism; Plant Roots / parasitology; Triticum / metabolism; Triticum / parasitology; Tylenchoidea / parasitology; Tylenchoidea / physiology; Xylem / cytology
TL;DR:
By interfering with a developmental program that normally leads to programmed cell death, H. avenae may permit xylem vessel elements to remain alive for later exploitation by the parasite.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: July 20, 2020
2019 journal article
A Single, Shared Triploidy in Three Species of Parasitic Nematodes
G3-GENES GENOMES GENETICS, 10(1), 225–233.
Contributors: A. Schoonmaker*, Y. Hao*, * & G. Conant n
author keywords: polyploidy; evolutionary model; root-knot nematode
MeSH headings : Animals; Evolution, Molecular; Genome, Helminth; Phylogeny; Triploidy; Tylenchoidea / classification; Tylenchoidea / genetics
TL;DR:
Three root-knot nematodes of the genus Meloidogyne descend from a single common hybridization event that yielded triplicated genomes with three distinguishable subgenomes, and ancestral loci where two of the three gene copies have been lost are less likely to have orthologs in Caenorhabditis elegans that are lethal when knocked down than are ancestral locu with surviving duplicate copies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: January 21, 2020
2018 journal article
Identification of Cytauxzoon felis antigens via protein microarray and assessment of expression library immunization against cytauxzoonosis
CLINICAL PROTEOMICS, 15(1).
Contributors: M. Schreeg n, H. Marr n, J. Tarigo n, M. Sherrill*, H. Outi*, E. Scholl n, n , A. Vigil*
author keywords: Cytauxzoonosis; Cytauxzoon felis; Expression library immunization; Protein microarray; Piroplasmid; Vaccine
TL;DR:
Protein microarray facilitated high-throughput identification of novel antigens, substantially increasing the pool of characterized C. felis Antigens and should be considered for development of C.Felis vaccines, diagnostics, and therapeutics.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: January 14, 2019
2017 journal article
Disparate gain and loss of parasitic abilities among nematode lineages
PLOS ONE, 12(9).
Contributors: M. Holterman *, A. Karegar *, P. Mooijman*, H. Van Megen*, S. Van Den Elsen *, M. Vervoort*, C. Quist *, G. Karssen
MeSH headings : Animals; Evolution, Molecular; Host-Parasite Interactions; Nematoda / classification; Nematoda / physiology; Nematoda / virology; Phylogeny; Plants / microbiology; Plants / parasitology
TL;DR:
This first molecular characterisation of numerous basal and supposedly harmless plant parasites as well as their non-parasitic relatives was able to generate a comprehensive molecular framework that allows for the reconstruction of trophic diversification for a complete phylum.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Networks Underpinning Symbiosis Revealed Through Cross-Species eQTL Mapping
Genetics, 206(4), 2175–2184.
Contributors: Y. Guo n, S. Fudali n, J. Gimeno n, P. Digennaro n, S. Chang n, V. Williamson *, n , D. Nielsen n
author keywords: transspecies; trans-eQTL; host-pathogen interaction; symbiosis; RNA-Seq
MeSH headings : Animals; Chromosome Mapping / methods; Gene Regulatory Networks; Genetic Pleiotropy; Helminth Proteins / genetics; Helminth Proteins / metabolism; Medicago / genetics; Medicago / parasitology; Plant Proteins / genetics; Plant Proteins / metabolism; Polymorphism, Genetic; Quantitative Trait Loci; Symbiosis / genetics; Transcription Factors / genetics; Transcription Factors / metabolism; Tylenchoidea / genetics; Tylenchoidea / pathogenicity
TL;DR:
An expression quantitative trait locus (eQTL) mapping-based approach to identify cause-and-effect relationships between genes from two partners engaged in an interspecific interaction is developed and applied to data from a Salmonella infection study, successfully identifying polymorphisms in the human genome affecting bacterial expression.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2016 journal article
Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements
GENOME BIOLOGY AND EVOLUTION, 8(9), 2964–2978.
Contributors: A. Szitenberg *, S. Cha n, C. Opperman n, n , M. Blaxter * & D. Lunt *
author keywords: nematoda; transposable elements evolution; RNA interference; mating system; parasitism
TL;DR:
Although statistical power to detect selection is demonstrated, there is no evidence that variation in these factors influence genomic TE loads across extended periods of time, and the effects of genetic drift appear to persist and control TE variation among species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2016 journal article
Mitochondrial Genome Sequences and Structures Aid in the Resolution of Piroplasmida phylogeny
PLOS ONE, 11(11).
Contributors: M. Schreeg n, H. Marr n, J. Tarigo n, L. Cohn *, n , E. Scholl n, M. Levy n, B. Wiegmann n , A. Birkenheuer n
MeSH headings : DNA, Protozoan / genetics; Genome, Mitochondrial; Humans; Phylogeny; Piroplasmida / classification; Piroplasmida / genetics; Protozoan Infections / parasitology
TL;DR:
Phylogenetic analysis of concatenated mitochondrial and 18S sequences as well as cox1 amino acid sequence identified five distinct Piroplasmida groups, each of which possesses a unique mitochondrial genome structure.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2016 journal article
PCR amplification of a multi-copy mitochondrial gene (cox3) improves detection of Cytauxzoon felis infection as compared to a ribosomal gene (18S)
VETERINARY PARASITOLOGY, 225, 123–130.
Contributors: M. Schreeg n, H. Marr n, E. Griffith n , J. Tarigo n, n , M. Reichard *, L. Cohn *, M. Levy n, A. Birkenheuer n
author keywords: Cytauxzoonosis; Cytochrome c oxidase; Piroplasmosis; Mitochondria; Feline; Molecular diagnostic assays
MeSH headings : Animals; Cat Diseases / diagnosis; Cats; DNA, Protozoan / blood; DNA, Protozoan / genetics; Electron Transport Complex IV / genetics; Gene Dosage; Haemosporida / genetics; Polymerase Chain Reaction / standards; Polymerase Chain Reaction / veterinary; Protozoan Infections, Animal / diagnosis; RNA, Ribosomal, 18S / genetics; Sensitivity and Specificity
TL;DR:
A PCR assay targeting the C. felis mitochondrial gene cytochrome c oxidase subunit III (cox3) is designed and demonstrated that the cox3 PCR can detect as low as 1 copy of DNA target and can detect C.Felis during early infections.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2015 book
Exploiting solved genomes of plant-parasitic nematodes to understand parasitism
In Advances in Botanical Research (Vol. 73, pp. 241–258).
Contributors: n , V. Williamson * & C. Opperman n
TL;DR:
Comparative genomics has confirmed much of what had been deduced from expressed sequence tag sequencing, and expanded the understanding of the extent of horizontal gene transfer as a source of novelty during the evolution of parasitism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: January 30, 2020
2015 journal article
The plant parasite Pratylenchus coffeae carries a minimal nematode genome
NEMATOLOGY, 17(6), 621–637.
Contributors: M. Burke n, E. Scholl n, D. Bird n, J. Schaff n, S. Colman*, R. Crowell*, S. Diener*, O. Gordon*
author keywords: Caenorhabditis elegans; lesion nematode; Meloidogyne hapla; migratory endoparasitic nematodes; nematode evolution; protein encoding genes
TL;DR:
The genome sequence of the lesion nematode, Pratylenchus coffeae, a significant pest of banana and other staple crops in tropical and sub-tropical regions worldwide is reported, and the P. coffeaegenome sequence may help to define timelines related to evolution of parasitism amongst nematodes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
Signatures of adaptation to plant parasitism in nematode genomes
Parasitology, 142(S1), S71–S84.
Contributors: n , J. Jones *, C. Opperman n, T. Kikuchi * & E. Danchin *
author keywords: nematodes; genomes; plant parasitism; adaptation; convergence
MeSH headings : Adaptation, Physiological; Animals; Genomics; Host-Parasite Interactions; Nematoda / genetics; Nematoda / physiology; Phylogeny; Plants / parasitology
TL;DR:
Overall, nematodes appear to have developed convergent genomic solutions to adapt to plant parasitism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2013 journal article
A Novel Candidate Vaccine for Cytauxzoonosis Inferred from Comparative Apicomplexan Genomics
PLOS ONE, 8(8).
Contributors: J. Tarigo n, E. Scholl n, D. Bird n, C. Brown *, L. Cohn *, G. Dean n, M. Levy n, D. Doolan *
MeSH headings : Animals; Antigens, Protozoan / genetics; Antigens, Protozoan / immunology; Cat Diseases / immunology; Cat Diseases / parasitology; Cat Diseases / prevention & control; Cats; Cattle; Conserved Sequence; Genome, Protozoan; Genomics; Immune Sera / immunology; Piroplasmida / genetics; Piroplasmida / immunology; Protozoan Infections, Animal / immunology; Protozoan Infections, Animal / parasitology; Protozoan Infections, Animal / prevention & control; Protozoan Proteins / genetics; Protozoan Proteins / immunology; Protozoan Vaccines / genetics; Protozoan Vaccines / immunology; Recombinant Proteins / genetics; Recombinant Proteins / immunology; Synteny; Theileria parva / genetics; Theileria parva / immunology
TL;DR:
Comparative genomics is used to computationally and experimentally interpret the C. felis genome to identify a novel candidate vaccine antigen for cytauxzoonosis, and this approach emphasizes the use of comparative genomics as an accelerated path to developing vaccines against experimentally intractable pathogens.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2013 journal article
Solution NMR studies of the plant peptide hormone CEP inform function
FEBS Letters, 587(24), 3979–3985.
Contributors: B. Bobay n, P. Digennaro n, E. Scholl n, N. Imin *, M. Djordjevic * & D. McK Bird
author keywords: NMR; Molecular dynamic; CEP; Root-knot nematode; Peptide; CLE; Meloidogyne
MeSH headings : Amino Acid Sequence; Animals; Genome, Plant / physiology; Host-Parasite Interactions / physiology; Models, Molecular; Molecular Dynamics Simulation; Molecular Mimicry / physiology; Molecular Sequence Data; Nuclear Magnetic Resonance, Biomolecular; Plant Diseases / genetics; Plant Diseases / parasitology; Plant Growth Regulators / chemistry; Plant Growth Regulators / physiology; Plants / genetics; Plants / metabolism; Root Nodules, Plant / metabolism; Root Nodules, Plant / parasitology; Sequence Homology, Amino Acid; Tylenchoidea / genetics; Tylenchoidea / metabolism
TL;DR:
The first NMR structures of CEP are presented and it is shown that root‐knot nematode also encodes CEP, presumably to mimic plant CEP as part of their stereotypic, parasitic interaction with vascular plants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: January 30, 2020
2012 journal article
A sequence-anchored linkage map of the plant-parasitic nematode meloidogyne hapla reveals exceptionally high genome-wide recombination
G3: Genes, Genomes, Genetics, 2(7), 815–824.
Contributors: V. Thomas*, S. Fudali*, J. Schaff*, Q. Liu *, E. Scholl*, C. Opperman *, n , V. Williamson *
author keywords: root-knot nematode; SNP; integrated map
MeSH headings : Amplified Fragment Length Polymorphism Analysis; Animals; Cellulase / classification; Chromosome Mapping; Contig Mapping; Crosses, Genetic; Genetic Linkage; Genetic Variation; Genome, Helminth; Genome, Plant; Genotype; Meiosis; Phylogeny; Plants / genetics; Plants / parasitology; Polymorphism, Single Nucleotide; Polysaccharide-Lyases / classification; Recombination, Genetic; Tylenchoidea / genetics
TL;DR:
This work presents the most comprehensive linkage map of a parasitic nematode to date and, together with genomic and transcript sequence resources, empowers M. hapla as a tractable model for analyses of genome organization and the inheritance of phenotypic traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: January 30, 2020
2011 journal article
Abstracts of NEMASYM: The Third Nematode-Bacteria Symbioses Research Coordination Network Meeting
Symbiosis, 55(3), 97–109.
TL;DR:
This project has focused on one of the most common eukaryote-prokaryote interactions: that between nematodes and bacteria, and the ubiquity and diversity of nematode-bacterium symbioses make them an excellent model to understand the key questions in symbiosis.
(via Semantic Scholar)
Sources: Crossref, NC State University Libraries
Added: February 12, 2020
2011 article
Computational and phylogenetic validation of nematode horizontal gene transfer
Scholl, E. H., & Bird, D. M. K. (2011, February 22). BMC BIOLOGY, Vol. 9.
Contributors: E. Scholl n & n
MeSH headings : Animals; Cellulase / genetics; Evolution, Molecular; Gene Transfer, Horizontal; Genes, Helminth; Molecular Sequence Data; Nematoda / classification; Nematoda / genetics; Phylogeny
TL;DR:
A detailed phylogenetic analysis of cellulase genes in the free-living nematode Pristionchus pacificus at the species, genus and family levels substantiates the hypothesis that such transfer has been a driving force in the evolution of niche specificity.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
RNAi Effector Diversity in Nematodes
PLOS NEGLECTED TROPICAL DISEASES, 5(6).
Contributors: J. Dalzell *, P. McVeigh *, N. Warnock*, M. Mitreva *, n , P. Abad *, C. Fleming *, T. Day *
MeSH headings : Animals; Conserved Sequence; Gene Expression Profiling; Helminth Proteins / biosynthesis; Helminth Proteins / genetics; Nematoda / genetics; RNA Interference
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2010 journal article
Proteomic and Bioinformatic Analysis of the Root-Knot Nematode Meloidogyne hapla: The Basis for Plant Parasitism
Journal of Proteome Research, 9(10), 5370–5381.
Contributors: F. Mbeunkui n, E. Scholl n, C. Opperman n, M. Goshe n & n
author keywords: LC/MSE; plant-parasite; nematode; data-independent acquisition; computational proteome
MeSH headings : Animals; Chromatography, Liquid; Computational Biology / methods; Databases, Protein; Genome, Helminth / genetics; Helminth Proteins / genetics; Helminth Proteins / metabolism; Humans; Internet; Plant Roots / parasitology; Proteomics / methods; Tandem Mass Spectrometry; Tylenchoidea / genetics; Tylenchoidea / metabolism
TL;DR:
To experimentally confirm the HapPep3 assignments using proteomics, a data-independent LC/MS(E) analysis to M. hapla protein extracts fractionated by SDS-PAGE was applied, and it was concluded that the identified proteins reflect a true and unbiased sampling of Happep3.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2010 review
Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology
[Review of ]. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 74(4), 479–503.
Contributors: T. Torto-Alalibo*, C. Collmer*, M. Gwinn-Giglio*, M. Lindeberg *, S. Meng n, M. Chibucos *, T. Tseng *, J. Lomax *
MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Bacterial Physiological Phenomena; Cell Adhesion; Computational Biology / methods; Fungi / genetics; Fungi / metabolism; Fungi / physiology; Host-Pathogen Interactions / genetics; Host-Pathogen Interactions / immunology; Plants / immunology; Plants / microbiology; Protein Transport; Symbiosis / genetics; Symbiosis / immunology; Virulence Factors
TL;DR:
Some unifying themes common to diverse host-microbe associations are reviewed and areas where new terms need to be developed are highlighted, an ongoing process that should involve the whole community.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 review
Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene Ontology
[Review of ]. BMC MICROBIOLOGY, 9(SUPPL. 1).
Contributors: T. Torto-Alalibo*, C. Collmer*, M. Lindeberg *, n , A. Collmer * & B. Tyler *
MeSH headings : Animals; Bacteria / metabolism; Biological Transport; Fungi / metabolism; Host-Pathogen Interactions; Nematoda / metabolism; Oomycetes / metabolism; Plant Diseases / microbiology; Plants / metabolism; Plants / microbiology; Symbiosis; Terminology as Topic; Vocabulary, Controlled
TL;DR:
This mini-review will summarize both similarities and differences in effectors and effector delivery systems found in diverse plant-associated symbionts as well as how these are described with Plant-Associated Microbe Gene Ontology (PAMGO) terms.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 article
The Genomes of Root-Knot Nematodes
ANNUAL REVIEW OF PHYTOPATHOLOGY, Vol. 47, pp. 333–351.
Contributors: D. McK Bird, V. Williamson *, P. Abad *, J. McCarter *, E. Danchin *, P. Castagnone-Sereno *, C. Opperman n
author keywords: asexual reproduction; genetics; horizontal gene transfer; Meloidogyne; plant parasite
MeSH headings : Animals; Biological Evolution; Gene Transfer, Horizontal; Genome, Helminth; Nematoda / genetics; Plant Diseases / genetics; Plant Roots / genetics
TL;DR:
Sequencing revealed that Meloidogyne hapla, a diploid that reproduces by facultative, meiotic parthenogenesis, encodes approximately 14,200 genes in a compact, 54 Mpb genome, which is the smallest metazoan genome completed to date and suggests new routes to their control.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 review
The secret(ion) life of worms
[Review of ]. GENOME BIOLOGY, 10(1).
MeSH headings : Animals; Helminth Proteins / analysis; Helminth Proteins / metabolism; Host-Parasite Interactions / immunology; Humans; Nematoda / chemistry; Nematoda / immunology; Nematoda / metabolism; Plants / immunology; Plants / parasitology; Proteomics
TL;DR:
Tandem mass spectrographic analysis of the secreted proteins of plant- and human-parasitic nematodes reveals molecular similarities that reflect the shared need to counter host defenses.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2009 journal article
The secret(ion) life of worms.
Genome Biology, 10(1), 205. http://www.scopus.com/inward/record.url?eid=2-s2.0-69449107507&partnerID=MN8TOARS
Source: ORCID
Added: January 30, 2020
2008 journal article
A sequence-anchored genetic linkage map for the moss, Physcomitrella patens
Plant Journal, 56(5), 840–854.
Source: NC State University Libraries
Added: August 6, 2018
2008 book
Genomic analysis of the root-knot nematode genome
In Plant Cell Monographs (Vol. 15, pp. 221–237).
Contributors: C. Opperman n, n & J. Schaff n
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: January 30, 2020
2008 book
Plant infection by root-knot nematode
In Plant Cell Monographs (Vol. 15, pp. 1–13).
Contributors: n , C. Opperman n & V. Williamson *
TL;DR:
The role of signaling molecules and their interplay with nematode development from hatch through primary interaction with the plant is considered.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
2008 journal article
SILIP: A novel stable isotope labeling method for in planta quantitative proteomic analysis
Plant Journal, 56(5), 840–854.
Contributors: J. Schaff n, F. Mbeunkui n, K. Blackburn n, D. Bird n & M. Goshe n
author keywords: plant proteomics; quantitative analysis; mass spectrometry; liquid chromatography; isotope-coded; isotope ratio
MeSH headings : Chromatography, Liquid; Isotope Labeling / methods; Solanum lycopersicum / metabolism; Nitrogen / metabolism; Nitrogen Isotopes / metabolism; Phenotype; Plant Proteins / metabolism; Proteomics / methods; Soil; Tandem Mass Spectrometry
TL;DR:
SILIP (stable isotope labeling in planta) is developed using tomato plants as a method that allows soil-grown plants to be efficiently labeled using a 14N/15N isotope coding strategy, and thus provides a new quantitative proteomics tool to study both plant and plant-microorganism systems.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: ORCID
Added: January 30, 2020
2008 journal article
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(39), 14802–14807.
Contributors: C. Opperman n, n , V. Williamson *, D. Rokhsar *, M. Burke n, J. Cohn n, J. Cromer n, S. Diener n
author keywords: compaction; dauer; development; horizontal gene transfer; gene
MeSH headings : Animals; Base Sequence; Caenorhabditis elegans / genetics; Chromosome Mapping; Evolution, Molecular; Gene Duplication; Gene Transfer, Horizontal; Genome, Helminth; Host-Parasite Interactions / genetics; Molecular Sequence Data; Multigene Family; Operon; Phylogeny; Plants / parasitology; Synteny; Tylenchoidea / genetics
TL;DR:
Meloidogyne hapla is established as a tractable model plant-parasitic nematode amenable to forward and reverse genetics, and a complete genome sequence is presented that defines a platform to elucidate mechanisms of parasitism by what is the largest uncontrolled group of plant pathogens worldwide.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2007 journal article
Comprehensive Transcriptome Profiling in Tomato Reveals a Role for Glycosyltransferase in Mi-Mediated Nematode Resistance
Plant Physiology, 144(2), 1079–1092.
Contributors: J. Schaff n, D. Nielsen n , C. Smith n, E. Scholl n & D. Bird n
MeSH headings : Animals; Feeding Behavior / physiology; Gene Expression; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Silencing; Genomics; Glycosyltransferases / metabolism; Host-Parasite Interactions / physiology; Solanum lycopersicum / enzymology; Solanum lycopersicum / genetics; Solanum lycopersicum / parasitology; Oligonucleotide Array Sequence Analysis; Plant Roots / enzymology; Plant Roots / metabolism; Plant Roots / parasitology; Reproduction / physiology; Tylenchoidea / physiology
TL;DR:
The root transcriptome of the resistant and susceptible cultivars ‘Motelle’ and ‘Moneymaker’ is interrogated, providing a picture of global gene expression changes in roots during compatible and incompatible associations with RKN, and point to candidates for further investigation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2007 journal article
Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines
GENOME BIOLOGY, 8(10).
Contributors: A. Elling *, M. Mitreva *, J. Recknor*, X. Gai *, J. Martin *, T. Maier*, J. McDermott*, T. Hewezi *
MeSH headings : Animals; Caenorhabditis elegans / metabolism; Computational Biology; Expressed Sequence Tags; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Library; Larva / metabolism; Oligonucleotide Array Sequence Analysis; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, DNA; Soybeans / parasitology; Species Specificity; Tylenchoidea / metabolism
TL;DR:
The results indicate that hallmark gene expression patterns and metabolism features are not shared in the developmentally arrested life stages of C. elegans and H. glycines, suggesting that developmental arrest in these two nematode species has undergone more divergent evolution than previously thought and pointing to the need for detailed genomic analyses of individual parasite species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2006 journal article
A method for generating Meloidogyne incognita males
Journal of Nematology, 38(2), 192–194. http://www.scopus.com/inward/record.url?eid=2-s2.0-33750134280&partnerID=MN8TOARS
Contributors: D. Snyder, C. Opperman & D. Bird
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2006 journal article
A method for isolation of Pasteuria penetrans endospores for bioassay and genomic studies
Journal of Nematology, 38(1), 165–167. http://www.scopus.com/inward/record.url?eid=2-s2.0-34248330929&partnerID=MN8TOARS
Contributors: J. Waterman, D. Bird & C. Opperman
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2006 journal article
A white paper on nematode comparative genomics
Journal of Nematology, 37(4), 408–416.
Source: NC State University Libraries
Added: August 6, 2018
2006 journal article
Nematode gene sequences: Update for December 2005
Journal of Nematology, 37(4), 417–421.
Source: NC State University Libraries
Added: August 6, 2018
2005 journal article
A white paper on nematode comparative genomics
Journal of Nematology, 37(4), 408–416. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744994353&partnerID=MN8TOARS
Contributors: D. Bird, M. Blaxter, J. McCarter, M. Mitreva, P. Sternberg & W. Thomas
Source: ORCID
Added: January 30, 2020
2005 review
Comparative genomics of nematodes
[Review of ]. TRENDS IN GENETICS, 21(10), 573–581.
Contributors: M. Mitreva *, M. Blaxter *, n & J. McCarter *
MeSH headings : Animals; Chromosome Aberrations; Databases, Genetic; Evolution, Molecular; Gene Transfer, Horizontal / genetics; Genetic Variation; Genome / genetics; Genomics / methods; Genomics / trends; Nematoda / genetics; Phylogeny; Species Specificity
TL;DR:
Analysis of draft nematode genome sequences have revealed multiple unexpected results, which will underpin both molecular understanding of these most abundant metazoan organisms and aid in the examination of the dynamics of genome evolution in animals.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2005 journal article
Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii
Parasitology Research, 98(5), 414–424.
Contributors: B. Vanholme *, M. Mitreva *, W. Van Criekinge *, M. Logghe*, n , J. McCarter *, G. Gheysen *
MeSH headings : Animals; Computational Biology / methods; Contig Mapping; DNA, Helminth / chemistry; DNA, Helminth / genetics; Expressed Sequence Tags; Gene Library; Glycoside Hydrolases / chemistry; Glycoside Hydrolases / genetics; Helminth Proteins / genetics; Plants / parasitology; Protein Sorting Signals / genetics; Protein Structure, Tertiary / genetics; Tylenchoidea / genetics
TL;DR:
The in silico approach described here is an effective way to identify putative secreted proteins and prioritize candidates for further studies and provides the first report of an arabinogalactan endo-1,4-β-galactosidase enzyme in animals.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: January 30, 2020
2005 journal article
Model systems in agriculture: Lessons from worms
Annals of Applied Biology, 146(2), 147–154.
TL;DR:
Genomic tools are expanding the utility of organisms originally developed as models for biomedical research as a means to address complex agricultural problems, and agricultural pests are serving as models to help unravel questions of basic biology.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2005 journal article
Nematode gene sequences: Update for December 2005
Journal of Nematology, 37(4), 417–421. http://www.scopus.com/inward/record.url?eid=2-s2.0-33744980477&partnerID=MN8TOARS
Contributors: J. McCarter, D. Bird & M. Mitreva
Source: ORCID
Added: January 30, 2020
2005 journal article
Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci
JOURNAL OF BACTERIOLOGY, 187(16), 5700–5708.
Contributors: L. Charles n, I. Carbone n , K. Davies *, n , M. Burke n, B. Kerry*, C. Opperman n
MeSH headings : Animals; Bacillus / genetics; Bacterial Proteins / genetics; Bayes Theorem; Models, Genetic; Phylogeny; Tylenchoidea / microbiology
TL;DR:
It is suggested that P. penetrans may have evolved from an ancient symbiotic bacterial associate of nematodes, possibly as the root knot nematode evolved to be a highly specialized parasite of plants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2005 journal article
Resolving tylenchid evolutionary relationships through multiple gene analysis derived from EST data
MOLECULAR PHYLOGENETICS AND EVOLUTION, 36(3), 536–545.
Contributors: E. Scholl n & n
author keywords: Bayesian; Caenorhabditis elegans; COG; cyst nematode; orthologues; root-knot nematode
MeSH headings : Animals; Evolution, Molecular; Expressed Sequence Tags; Phylogeny; Selection, Genetic; Tylenchida / genetics
TL;DR:
This EST-based multi-gene analysis is a first step towards accomplishing genome-wide coverage for tylenchid evolutionary analyses and reveals significant differences in selective pressure for some genes under some hypotheses, though all but one gene are exclusively under purifying selection.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2005 journal article
Root-knot nematodes and bacterial Nod factors elicit common signal transduction events in Lotus japonicus
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(8), 3147–3152.
Contributors: R. Weerasinghe n, D. Bird n & N. Allen n
author keywords: cytoskeleton; NemF; rhizobia; actin; microtubule
MeSH headings : Animals; Cytoskeleton / physiology; Lipopolysaccharides / pharmacology; Lotus / physiology; Signal Transduction / physiology; Symbiosis; Tylenchoidea / physiology
TL;DR:
It is proposed that plant-parasitic root-knot nematodes have adapted at least part of the symbiont-response pathway to enhance their parasitic ability.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2004 journal article
A survey of SL1-spliced transcipts from the root-lesion nematode Pratylenchus penetrans
MOLECULAR GENETICS AND GENOMICS, 272(2), 138–148.
Contributors: M. Mitreva *, A. Elling *, M. Dante*, A. Kloek*, A. Kalyanaraman*, S. Aluru *, S. Clifton*, D. Bird n, T. Baum *, J. McCarter *
author keywords: Pratylenchus; expressed sequence tags (ESTs); comparative genomics; gene expression; parasite
MeSH headings : Animals; Caenorhabditis elegans / genetics; DNA, Helminth / genetics; Expressed Sequence Tags; Gene Library; Gene Transfer, Horizontal; Genes, Helminth; Multigene Family; Phenotype; Plant Diseases / parasitology; Plants / parasitology; Polymerase Chain Reaction; RNA Interference; RNA, Helminth / genetics; RNA, Spliced Leader / genetics; Species Specificity; Tylenchoidea / genetics; Tylenchoidea / growth & development; Tylenchoidea / pathogenicity
TL;DR:
The generation and analysis of 1928 expressed sequence tags (ESTs) of a splice-leader 1 (SL1) library from mixed life stages of the root-lesion nematode Pratylenchus penetrans are described.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2004 journal article
Cytokinins play opposite roles in lateral root formation, and nematode and Rhizobial symbioses
PLANT JOURNAL, 38(2), 203–214.
Contributors: D. Lohar n, J. Schaff n, J. Laskey*, J. Kieber *, K. Bilyeu * & D. Bird n
author keywords: cytokinins; lateral root; symbiosis; cytokinin oxidase; ARR; Lotus japonicus
MeSH headings : Animals; Arabidopsis / genetics; Base Sequence; Cytokinins / physiology; DNA, Plant / genetics; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; Genes, Reporter; Glucuronidase / genetics; Lotus / genetics; Lotus / growth & development; Lotus / microbiology; Lotus / parasitology; Oxidoreductases / genetics; Plant Diseases / genetics; Plant Diseases / parasitology; Plant Roots / growth & development; Plants, Genetically Modified; Promoter Regions, Genetic; Rhizobium / physiology; Symbiosis / physiology; Tylenchoidea / pathogenicity; Tylenchoidea / physiology; Zea mays / genetics
TL;DR:
A dynamic role for cytokinin in lateral root development is suggested, as seen in curled/deformed root hairs, and also in nodule primordia in response to Rhizobial inoculation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2004 journal article
MeSH headings : Animals; Bacteria / metabolism; Caenorhabditis / genetics; Caenorhabditis / metabolism; Caenorhabditis / microbiology; Caenorhabditis elegans / genetics; Caenorhabditis elegans / metabolism; Caenorhabditis elegans / microbiology; Chorismate Mutase / genetics; Cytoskeleton / chemistry; Evolution, Molecular; Helminth Proteins / metabolism; Microscopy, Confocal / methods; Nematoda / genetics; Nematoda / metabolism; Nematoda / microbiology; Phylogeny; Plant Cells; Plants / chemistry; Plants / metabolism; Plants / parasitology; United States
TL;DR:
A report on the 43rd annual meeting of the Society of Nematologists (SON), Estes Park, USA, 7-11 August 2004.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
2004 review
Signaling between nematodes and plants
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 7(4), 372–376.
Contributors: D. Bird n
MeSH headings : Animals; Gene Expression Regulation, Plant; Host-Parasite Interactions; Nematoda / genetics; Nematoda / metabolism; Nematoda / pathogenicity; Plant Roots / metabolism; Plant Roots / parasitology; Plants / metabolism; Plants / parasitology; Signal Transduction
TL;DR:
After hatching in the soil, root-knot nematodes must locate and penetrate a root, migrate into the vascular cylinder, and establish a permanent feeding site, Presumably, these events are accompanied by extensive signaling between the nematode parasite and the host.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2003 journal article
Analysis and functional classification of transcripts from the nematode Meloidogyne incognita.
Genome Biology, 4(4), R26–1. http://www.scopus.com/inward/record.url?eid=2-s2.0-9444261296&partnerID=MN8TOARS
Contributors: J. McCarter, M. Mitreva, J. Martin, M. Dante, T. Wylie, U. Rao, D. Pape, Y. Bowers
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2003 review
Are roots special? Nematodes have their say
[Review of ]. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY, 62(2), 115–123.
Contributors: D. Bird n & I. Kaloshian *
author keywords: Caenorhabditis elegans; genomics; horizontal-gene transfer; Macrosiphum euphorbiae; Meloidogyne spp; rhizobia
TL;DR:
Based on recent molecular evidence, several scenarios involving phytohormones in the induction of giant cells by root-knot nematodes are presented and parallels with aphid-plant interactions are emphasized.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2003 journal article
Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach.
Genome Biology, 4(6), R39–1. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038576862&partnerID=MN8TOARS
Contributors: E. Scholl, J. Thorne, J. McCarter &
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2003 review
Interactions between bacteria and plant-parasitic nematodes: now and then
[Review of ]. INTERNATIONAL JOURNAL FOR PARASITOLOGY, 33(11), 1269–1276.
Contributors: D. Bird n, C. Opperman n & K. Davies *
author keywords: horizontal gene transfer; Meloidogyne; Pasteuria penetrans; rhizobia; root-knot nematode; synteny
MeSH headings : Animals; Bacillus / genetics; Bacillus / physiology; Gene Transfer, Horizontal; Genes, Bacterial; Genes, Helminth; Life Cycle Stages; Plants / parasitology; Rhizobiaceae / genetics; Rhizobiaceae / physiology; Synteny; Tylenchoidea / genetics; Tylenchoidea / parasitology; Tylenchoidea / physiology
TL;DR:
It is proposed that the origin of parasitism in Meloidogyne may have been facilitated by acquisition of genetic material from soil bacteria through horizontal transfer, and that such events represented key steps in speciation of plant-parasitic nematodes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2003 journal article
Lotus japonicus: A new model to study root-parasitic nematodes
PLANT AND CELL PHYSIOLOGY, 44(11), 1176–1184.
author keywords: CLAVATA1-like receptor kinase; har1; Heterodera glycines; hypersensitive response; Lotus japonicus; Meloidogyne spp.
MeSH headings : Animals; Lotus / parasitology; Models, Biological; Nematoda / physiology; Plant Roots / parasitology
TL;DR:
Lotus japonicus is a powerful model legume for studying compatible and incompatible plant-nematode interactions, and is developed as such a model by establishing conditions for efficient parasitism by root-knot nematode of the widely used Lotus "Gifu" ecotype.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2003 journal article
Molecular signals and receptors: Controlling rhizosphere interactions between plants and other organisms
ECOLOGY, 84(4), 858–868.
Contributors: A. Hirsch *, W. Bauer *, n , J. Cullimore *, B. Tyler & J. Yoder *
author keywords: parasitism; pathogenesis; predation; quorum sensing; receptors; rhizosphere interactions; signals; symbiosis
TL;DR:
A new age of experimental field ecology may soon burst forth in rhizosphere studies by identifying the signals, receptors, and the critical control points, to better understand the organismal dynamics in this key belowground ecosystem.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2003 journal article
Nematode gene sequences: Update for December 2003
Journal of Nematology, 35(4), 465–469. http://www.scopus.com/inward/record.url?eid=2-s2.0-1842510703&partnerID=MN8TOARS
Contributors: J. McCarter, M. Mitreva, S. Clifton, D. Bird & R. Waterston
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2002 journal article
Nematode gene sequences, update for June 2002
Journal of Nematology, 34(2), 71–74. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036618995&partnerID=MN8TOARS
Contributors: J. McCarter, S. Clifton, D. Bird & R. Waterston
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2002 journal article
Recovery and sequence validation of the histological signal following in situ RT-PCR localization of plant gene transcripts
PLANT MOLECULAR BIOLOGY REPORTER, 20(4), 391–397.
Contributors: H. Koltai* & n
author keywords: functional genomics; in situ RT-PCR; Medicago truncatula; nodule; signal specificity; transcription
TL;DR:
The ability to experimentally establish the specificity of an in situ signal after the fact enhances the high-throughput capability of the in-well RT-PCR method and further increases the utility of this technique as a powerful tool for functional genomics studies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2001 journal article
Cytochrome c is not essential for viability of the fungus Aspergillus nidulans
Molecular Genetics and Genomics, 266(1), 48–55.
Contributors: R. Bradshaw *, * , S. Brown *, R. Gardiner* & P. Hirst*
author keywords: cytochrome c; Aspergillus; gene replacement; alternative respiration
MeSH headings : Aspergillus nidulans / enzymology; Aspergillus nidulans / genetics; Aspergillus nidulans / growth & development; Aspergillus nidulans / metabolism; Cytochrome c Group / metabolism; Diploidy; Ethanol / metabolism; Fermentation; Genes, Fungal; Mutation; Oxygen / metabolism; Spores, Fungal
TL;DR:
This is the first report of a filamentous fungus that remains viable after complete elimination of a functional cytochrome c gene, and it is proposed that the mutants are viable due to their ability to ferment and to use alternative respiratory pathways.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
2001 journal article
Overlapping plant signal transduction pathways induced by a parasitic nematode and a rhizobial endosymbiont
MOLECULAR PLANT-MICROBE INTERACTIONS, 14(10), 1168–1177.
Contributors: H. Koltai n, M. Dhandaydham, C. Opperman*, J. Thomas* & n
author keywords: cytokinin; Meloidogyne incognita; Nod factor; PHANTASTICA; polar auxin flow; rough sheath2
MeSH headings : Amino Acid Sequence; Animals; Cell Cycle Proteins / genetics; Cell Cycle Proteins / physiology; Cell Size; DNA-Binding Proteins / genetics; DNA-Binding Proteins / physiology; Gene Expression Regulation, Plant; Growth Substances / genetics; Growth Substances / physiology; Homeodomain Proteins / genetics; Homeodomain Proteins / physiology; Host-Parasite Interactions; Humans; Medicago / genetics; Medicago / microbiology; Medicago / parasitology; Mitosis; Molecular Sequence Data; Nematoda / genetics; Nematoda / physiology; Nuclear Proteins / genetics; Nuclear Proteins / physiology; Plant Diseases / microbiology; Plant Diseases / parasitology; Plant Proteins / genetics; Plant Proteins / physiology; Plant Roots / genetics; Plant Roots / microbiology; Plant Roots / parasitology; Proto-Oncogene Proteins c-myb; Sequence Homology, Amino Acid; Signal Transduction / physiology; Sinorhizobium meliloti / genetics; Sinorhizobium meliloti / physiology; Symbiosis
TL;DR:
Common elements of host responses to mutualistic and parasitic plant endosymbionts are revealed and imply that overlapping regulatory pathways lead to giant cells and nodules.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2000 journal article
Alan Francis Bird: 1928-99
Journal of Nematology, 32(1), 1–3.
Source: NC State University Libraries
Added: August 6, 2018
2000 journal article
Epistatic repression of PHANTASTICA and class 1 KNOTTED genes is uncoupled in tomato
PLANT JOURNAL, 22(5), 455–459.
Contributors: H. Koltai n & n
MeSH headings : Base Sequence; DNA Primers; DNA-Binding Proteins / genetics; Epistasis, Genetic; Homeodomain Proteins / genetics; Solanum lycopersicum / genetics; Molecular Sequence Data; Plant Proteins / genetics; Proto-Oncogene Proteins c-myb
TL;DR:
The results imply that the expression of Le-phan is insufficient for the repression of Tkn2 in tomato and suggest an expanded role for either gene in the establishment of cell identity in plant development.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2000 journal article
High throughput cellular localization of specific plant mRNAs by liquid-phase in situ reverse transcription-polymerase chain reaction of tissue sections
PLANT PHYSIOLOGY, 123(4), 1203–1212.
Contributors: H. Koltai n & D. McKenzie Bird
MeSH headings : Arabidopsis / anatomy & histology; Arabidopsis / genetics; Gene Expression Profiling / methods; Genes, Plant; Solanum lycopersicum / anatomy & histology; Solanum lycopersicum / genetics; Microscopy, Interference; RNA, Messenger / analysis; Reverse Transcriptase Polymerase Chain Reaction / methods
TL;DR:
A polymerase chain reaction-based method to detect mRNA species in situ in which essentially all of the steps are carried out in liquid phase in a 96-well microtiter tray and only the final signal detection is performed on a microscope slide, which may become a powerful tool for functional genomics studies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
10. Reduced Inequalities
(OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2000 journal article
Nematode gene sequences, December 2000 update
Journal of Nematology, 32(4), 331–333. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034353966&partnerID=MN8TOARS
Contributors: J. McCarter, D. Bird, S. Clifton & R. Waterston
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2000 journal article
Plant parasitic nematodes: Habitats, hormones, and horizontally-acquired genes
Journal of Plant Growth Regulation, 19(2), 183–194. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033758702&partnerID=MN8TOARS
Contributors: & H. Koltai
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2000 journal article
Rapid gene discovery in plant parasitic nematodes via Expressed Sequence Tags
NEMATOLOGY, 2(7), 719–731.
Contributors: J. McCarter, P. Abad*, J. Jones * & n
author keywords: Caenorhabditis elegans; clustering; EST; Globodera; Meloidogyne; NemaGene
TL;DR:
The process used to create sequences called expressed sequence tags or ESTs, which are single-sequence reads from randomly-selected cDNA clones, are reviewed and the strengths and weaknesses of ESTs as research tools are outlined.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
1999 review
The Caenorhabditis elegans genome: A guide in the post genomics age
[Review of ]. ANNUAL REVIEW OF PHYTOPATHOLOGY, 37(1999), 247–265.
Contributors: D. Bird n, C. Opperman n, S. Jones * & D. Baillie*
author keywords: genetics; Heterodera glycines; host resistance; nematode; parasites
TL;DR:
The completion of the entire genome sequence of the free-living nematode, Caenorhabditis elegans is a tremendous milestone in modern biology and genetic and genomic approaches to the study of parasitic nematodes now have a clearly marked path to follow.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
1998 journal article
Caenorhabditis elegans: A genetic guide to parasitic nematode biology
Journal of Nematology, 30(3), 299–308. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032357095&partnerID=MN8TOARS
Contributors: D. Bird & C. Opperman
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
1998 review
The soybean cyst nematode, Heterodera glycines: a genetic model system for the study of plant-parasitic nematodes
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 1(4), 342–346.
Contributors: C. Opperman n & n
MeSH headings : Animals; Models, Biological; Nematoda / genetics; Nematoda / physiology; Physical Chromosome Mapping; Soybeans / genetics; Soybeans / parasitology
TL;DR:
Integration of classic and reverse genetics and genomic approaches for the parasite, with host genetics and genomics will expand the knowledge of nematode parasitism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
1997 journal article
Gene targeting is locus dependent in the filamentous fungus Aspergillus nidulans
Molecular and General Genetics, 255(2), 219–225.
Contributors: * & R. Bradshaw *
author keywords: Aspergillus nidulans; gene targeting nitrate reductase; acetamidase
MeSH headings : Amidohydrolases / genetics; Aspergillus nidulans / genetics; Aspergillus nidulans / growth & development; DNA / chemistry; DNA / genetics; DNA Damage; Nitrate Reductase; Nitrate Reductases / genetics; Plasmids / chemistry; Plasmids / genetics; Temperature; Transcription, Genetic; Transformation, Genetic
TL;DR:
The most dramatic effect was the difference between targeting efficiency at different genetic loci, with targeting of niaD being at least five fold more efficient than amdS under all conditions tested.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
1997 journal article
Promoter structure of the RNA polymerase II large subunit gene in caenorhabditis elegans and C. Briggsae
Journal of Nematology, 29(2), 144–152. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030786968&partnerID=MN8TOARS
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
1996 article
Manipulation of host gene expression by root-knot nematodes
Bird, D. M. (1996, December). JOURNAL OF PARASITOLOGY, Vol. 82, pp. 881–888.
Contributors: D. Bird n
TL;DR:
Based on analysis of approximately 220 giant cell expressed genes, key elements of giant cell function and regulation have been identified; examples are discussed in the context of giants cell biology and ontogeny.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
1994 journal article
A comprehensive subtractive cDNA cloning approach to identify nematode-induced transcripts in tomato
Phytopathology, 84(3), 299–303.
TL;DR:
Using a cDNA cloning technique that incorporated polymerase chain reaction amplification of cDNA and subtraction in a single-strand phage-mid vector, a library of transcripts exhibiting up regulation in tomato cells infected with the parasitic nematode Meloidogyne incognita was constructed.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
1994 journal article
A genetic nomenclature for parasitic nematodes
Journal of Nematology, 26(2), 138–143. http://www.scopus.com/inward/record.url?eid=2-s2.0-0028054366&partnerID=MN8TOARS
Source: ORCID
Added: January 30, 2020
1994 journal article
DNA sequence and expression analysis of root-knot nematode-elicited giant cell transcripts
Molecular Plant-Microbe Interactions, 7(3), 419–424.
TL;DR:
The identities of approximately 20% of the giant cell transcripts were inferred from DNA sequence data; they include sequences encoding a plasmalemma proton ATPase, a putative Myb-type transcription factor, and the largest subunit of RNA polymerase II.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Source: ORCID
Added: January 30, 2020
1993 journal article
Rapid miniprep isolation of mitochondrial DNA from metacestodes, and free- living and parasitic nematodes
Journal of Parasitology, 79(6), 964–967.
TL;DR:
A method, based on one to isolate supercoiled plasmid DNA from bacterial cells, has been developed to purify mitochondrial DNA from cestode and nematode tissue easily and efficiently.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
1992 journal article
Efficient removal of hybridization signal from Southern blots probed with radiolabeled oligonucleotides
BioTechniques, 13(1), 34–36. http://www.scopus.com/inward/record.url?eid=2-s2.0-0026653183&partnerID=MN8TOARS
Source: ORCID
Added: January 30, 2020
1992 journal article
Sequence comparison of the Caenorhabditis elegans dpy-13 and col-34 genes, and their deduced collagen products
Gene, 120(2), 261–266.
Contributors: D. Bird *
author keywords: RECOMBINANT DNA; NEMATODES; MORPHOGENESIS; PROTEINS; SECONDARY STRUCTURE; GENETIC MAP; MUTANT
MeSH headings : Amino Acid Sequence; Animals; Caenorhabditis elegans / genetics; Cloning, Molecular; Collagen / genetics; Genes; Introns; Molecular Sequence Data; Restriction Mapping; Sequence Homology, Amino Acid; Sequence Homology, Nucleic Acid; TATA Box
TL;DR:
The deduced amino acid sequence of Col-34 has a high degree of homology with the Dpy-13 collagen, although there are significant differences.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
1989 journal article
Molecular cloning and sequencing of ama-1, the gene encoding the largest subunit of Caenorhabditis elegans RNA polymerase II
Molecular and Cellular Biology, 9(10), 4119–4130.
Source: ORCID
Added: January 30, 2020
1988 journal article
dpy-13: A nematode collagen gene that affects body shape
Cell, 55(4), 567–576.
Contributors: N. Mende*, D. Bird *, P. Albert * & D. Riddle*
MeSH headings : Alleles; Animals; Base Sequence; Caenorhabditis / genetics; Caenorhabditis / growth & development; Chromosome Deletion; Collagen / genetics; DNA / analysis; DNA Transposable Elements; Molecular Sequence Data; Mutation; RNA Polymerase II / genetics
TL;DR:
The DNA sequence reveals that dpy-13 is a member of the collagen multi-gene family, and it could encode a polypeptide of 302 amino acids, which is unique in the C. elegans genome.
(via Semantic Scholar)
Source: ORCID
Added: January 30, 2020
Employment
Updated: January 28th, 2020 12:18
1995 - present
North Carolina State University Raleigh, NC, US
Named Professor
Entomology and Plant Pathology
Education
Updated: January 30th, 2020 13:08
1980 - 1984
University of Adelaide Adelaide, SA, AU
PhD
Biochemistry
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