@article{hornstein_charles_franklin_edwards_vintila_kleiner_sederoff_2024, title={<i>IPD3</i>, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host <i>Arabidopsis</i> when restored long after its evolutionary loss}, volume={114}, ISSN={["1573-5028"]}, url={https://doi.org/10.1007/s11103-024-01422-3}, DOI={10.1007/s11103-024-01422-3}, abstractNote={Abstract}, number={2}, journal={PLANT MOLECULAR BIOLOGY}, author={Hornstein, Eli D. and Charles, Melodi and Franklin, Megan and Edwards, Brianne and Vintila, Simina and Kleiner, Manuel and Sederoff, Heike}, year={2024}, month={Apr} }
 @article{budnick_franklin_utley_edwards_charles_hornstein_sederoff_2024, title={Long- and short-read sequencing methods discover distinct circular RNA pools in <i>Lotus japonicus</i>}, volume={1}, ISSN={["1940-3372"]}, url={https://doi.org/10.1002/tpg2.20429}, DOI={10.1002/tpg2.20429}, abstractNote={Abstract}, journal={PLANT GENOME}, author={Budnick, Asa and Franklin, Megan J. and Utley, Delecia and Edwards, Brianne and Charles, Melodi and Hornstein, Eli D. and Sederoff, Heike}, year={2024}, month={Jan} }
 @article{charles_edwards_ravishankar_calero_henry_rech_saravitz_you_ade_o'connor_et al._2023, title={Emergent molecular traits of lettuce and tomato grown under wavelength-selective solar cells}, volume={14}, ISSN={["1664-462X"]}, DOI={10.3389/fpls.2023.1087707}, abstractNote={The integration of semi-transparent organic solar cells (ST-OSCs) in greenhouses offers new agrivoltaic opportunities to meet the growing demands for sustainable food production. The tailored absorption/transmission spectra of ST-OSCs impacts the power generated as well as crop growth, development and responses to the biotic and abiotic environments. To characterize crop responses to ST-OSCs, we grew lettuce and tomato, traditional greenhouse crops, under three ST-OSC filters that create different light spectra. Lettuce yield and early tomato development are not negatively affected by the modified light environment. Our genomic analysis reveals that lettuce production exhibits beneficial traits involving nutrient content and nitrogen utilization while select ST-OSCs impact regulation of flowering initiation in tomato. These results suggest that ST-OSCs integrated into greenhouses are not only a promising technology for energy-neutral, sustainable and climate-change protected crop production, but can deliver benefits beyond energy considerations.}, journal={FRONTIERS IN PLANT SCIENCE}, author={Charles, Melodi and Edwards, Brianne and Ravishankar, Eshwar and Calero, John and Henry, Reece and Rech, Jeromy and Saravitz, Carole and You, Wei and Ade, Harald and O'Connor, Brendan and et al.}, year={2023}, month={Feb} }
 @article{edwards_hornstein_wilson_sederoff_2022, title={High-throughput detection of T-DNA insertion sites for multiple transgenes in complex genomes}, volume={23}, ISSN={["1471-2164"]}, DOI={10.1186/s12864-022-08918-6}, abstractNote={Abstract}, number={1}, journal={BMC GENOMICS}, author={Edwards, Brianne and Hornstein, Eli D. and Wilson, Nathan J. and Sederoff, Heike}, year={2022}, month={Oct} }
 @article{michelle c. d'aguillo_edwards_donohue_2019, title={Can the Environment have a Genetic Basis? A Case Study of Seedling Establishment in Arabidopsis thaliana}, volume={110}, ISSN={["1465-7333"]}, DOI={10.1093/jhered/esz019}, abstractNote={Abstract}, number={4}, journal={JOURNAL OF HEREDITY}, author={Michelle C. D'Aguillo and Edwards, Brianne R. and Donohue, Kathleen}, year={2019}, month={Jun}, pages={467–478} }
 @article{edwards_burghardt_kovach_donohue_2017, title={Canalization of Seasonal Phenology in the Presence of Developmental Variation: Seed Dormancy Cycling in an Annual Weed}, volume={57}, ISSN={["1557-7023"]}, DOI={10.1093/icb/icx065}, abstractNote={Variation in the developmental timing in one life stage may ramify within and across generations to disrupt optimal phenology of other life stages. By focusing on a common mechanism of developmental arrest in plants-seed dormancy-we investigated how variation in flowering time influenced seed germination behavior and identified potential processes that can lead to canalized germination behavior despite variation in reproductive timing. We quantified effects of reproductive timing on dormancy cycling by experimentally manipulating the temperature during seed maturation and the seasonal timing of seed dispersal/burial, and by assessing temperature-dependent germination of un-earthed seeds over a seasonal cycle. We found that reproductive timing, via both seed-maturation temperature and the timing of dispersal, strongly influenced germination behavior in the weeks immediately following seed burial. However, buried seeds subsequently canalized their germination behavior, after losing primary dormancy and experiencing natural temperature and moisture conditions in the field. After the complete loss of primary dormancy, germination behavior was similar across seed-maturation and dispersal treatments, even when secondary dormancy was induced. Maternal effects themselves may contribute to the canalization of germination: first, by inducing stronger dormancy in autumn-matured seeds, and second by modifying the responses of those seeds to their ambient environment. Genotypes differed in dormancy cycling, with functional alleles of known dormancy genes necessary for the suppression of germination at warm temperatures in autumn through spring across multiple years. Loss of function of dormancy genes abolished almost all dormancy cycling. In summary, effects of reproductive phenology on dormancy cycling of buried seeds were apparent only as long as seeds retained primary dormancy, and a combination of genetically imposed seed dormancy, maternally induced seed dormancy, and secondary dormancy can mitigate variation in germination behavior imposed by variation in reproductive phenology.}, number={5}, journal={INTEGRATIVE AND COMPARATIVE BIOLOGY}, author={Edwards, Brianne and Burghardt, Liana T. and Kovach, Katherine E. and Donohue, Kathleen}, year={2017}, month={Nov}, pages={1021–1039} }