Colleen Jennifer Doherty

Auxin-cytokinin interplay shapes root functionality under low-temperature stress

[Review of ]. TRENDS IN PLANT SCIENCE, 28(4), 447–459.

Hybrid spatial-temporal Mueller matrix imaging spectropolarimeter for high throughput plant phenotyping

APPLIED OPTICS, 62(8), 2078–2091.

The Game of Timing: Circadian Rhythms Intersect with Changing Environments

[Review of ]. ANNUAL REVIEW OF PLANT BIOLOGY, 74, 511–538.

Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions

AOB PLANTS, 15(3).

Arabidopsis cell suspension culture that lacks circadian rhythms can be recovered by constitutive ELF3 expression

Laosuntisuk, K., Desai, J. S., & Doherty, C. J. (2022, May 13). (Vol. 5). Vol. 5.

Assessing the Nucleotide-Level Impact of Spaceflight Stress using RNA-Sequencing Data

Knight, M. S., Doherty, C. J., & Nielsen, D. M. (2022, December 2).

Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses

PLANT GRAVITROPISM, Vol. 2368, pp. 301–319.

Multistatic fiber-based system for measuring the Mueller matrix bidirectional reflectance distribution function

APPLIED OPTICS, 61(33), 9832–9842.

The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures

[Review of ]. BIOCHEMICAL SOCIETY TRANSACTIONS, 50(3), 1151–1165.

Fieldable Mueller matrix imaging spectropolarimeter using a hybrid spatial and temporal modulation scheme

POLARIZATION SCIENCE AND REMOTE SENSING X, Vol. 11833.

Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice

SCIENTIFIC REPORTS, 11(1).

Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions

PLANT DIRECT, 5(3).

The Circadian-clock Regulates the Arabidopsis Gravitropic Response

Gravitational and Space Research.

Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots

LIFE-BASEL, 11(10).

Warm nights disrupt transcriptome rhythms in field-grown rice panicles

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).

A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber

SCIENTIFIC REPORTS, 10(1).

Current status of the multinational Arabidopsis community

Plant Direct, 4(7).

Detection of Gray Mold Infection in Plants Using a Multispectral Imaging System

Scarboro, C. G., Ruzsa, S. M., Doherty, C. J., & Kudenov, M. W. (2020, April 25). (Vol. 4). Vol. 4.

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome

RNA, 25(6), 669–684.

Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future

PLANT DIRECT, 3(1).

Directions for research and training in plant omics: Big Questions and Big Data

Plant Direct, 3(4), e00133.

New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum

J. Exp. Bot, 4.

Novel transcriptional responses to heat revealed by turning up the heat at night

Plant Molecular Biology, 101(1-2), 1–19.

Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals

Phytochemistry Reviews, 18(6), 1409–1433.

Warm nights disrupt global transcriptional rhythms in field-grown rice panicles

Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). (Vol. 7). Vol. 7.

Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance

FRONTIERS IN PLANT SCIENCE, 9.

Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes

Scientific Reports.

Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors

CURRENT BIOLOGY, 27(3), 437–444.

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology

Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., … Brady, S. M. (2017, December). PLANT PHYSIOLOGY, Vol. 175, pp. 1499–1509.

Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes

Desai, J. S., Sartor, R. C., Lawas, L. M., Jagadish, S. V. K., & Doherty, C. J. (2016, December 24). (Vol. 12). Vol. 12.

Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.

Proceedings of the National Academy of Sciences of the United States of America.

Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.

The Plant Journal : for Cell and Molecular Biology.

A genome-scale resource for the functional characterization of Arabidopsis transcription factors.

Cell Reports.

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.

Proceedings of the National Academy of Sciences of the United States of America.

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses.

Proceedings of the National Academy of Sciences of the United States of America.

Circadian surprise--it's not all about transcription.

Science (New York, N.Y.).

A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana.

Journal of Experimental Botany.

Circadian control of global gene expression patterns.

Annual Review of Genetics.

Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance.

The Plant Cell.