Works (35)

2022 article

Arabidopsis cell suspension culture that lacks circadian rhythms can be recovered by constitutive ELF3 expression

Laosuntisuk, K., Desai, J. S., & Doherty, C. J. (2022, May 13). (Vol. 5). Vol. 5.

By: K. Laosuntisuk n, J. Desai n & C. Doherty

Source: ORCID
Added: May 20, 2022

2022 article

Assessing the Nucleotide-Level Impact of Spaceflight Stress using RNA-Sequencing Data

Knight, M. S., Doherty, C. J., & Nielsen, D. M. (2022, December 2).

By: M. Knight, C. Doherty & D. Nielsen

Source: ORCID
Added: December 3, 2022

2022 article

Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses

PLANT GRAVITROPISM, Vol. 2368, pp. 301–319.

author keywords: Circadian; Gravistimulation; Time of day; Diel; Simulated microgravity
Sources: ORCID, Web Of Science
Added: October 14, 2021

2022 journal article

Multistatic fiber-based system for measuring the Mueller matrix bidirectional reflectance distribution function

APPLIED OPTICS, 61(33), 9832–9842.

By: C. Scarboro, C. Doherty, P. Balint-Kurti & M. Kudenov

Sources: Web Of Science, ORCID
Added: December 12, 2022

2022 review

The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures

[Review of ]. BIOCHEMICAL SOCIETY TRANSACTIONS, 50(3), 1151–1165.

By: K. Laosuntisuk & C. Doherty

Sources: ORCID, Web Of Science
Added: June 28, 2022

2021 article

Fieldable Mueller matrix imaging spectropolarimeter using a hybrid spatial and temporal modulation scheme

POLARIZATION SCIENCE AND REMOTE SENSING X, Vol. 11833.

author keywords: Mueller matrix; polarimetry; imaging; temporal; spatial; modulation; plants
Sources: Web Of Science, ORCID
Added: March 21, 2022

2021 journal article

Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice

SCIENTIFIC REPORTS, 11(1).

By: R. Bheemanahalli, M. Knight, C. Quinones*, C. Doherty & S. Jagadish*

Sources: ORCID, Web Of Science
Added: March 25, 2021

2021 journal article

Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions

PLANT DIRECT, 5(3).

By: C. Scarboro n, S. Ruzsa, C. Doherty & M. Kudenov

author keywords: disease detection; gray mold; hyperspectral imaging; multispectral imaging; plant pathology; reflectance indexing
Sources: ORCID, Web Of Science
Added: March 25, 2021

2021 journal article

The Circadian-clock Regulates the Arabidopsis Gravitropic Response

Gravitational and Space Research.

By: J. Tolsma n, K. Ryan n, J. Torres*, J. Richards*, Z. Richardson n, E. Land, I. Perera, C. Doherty

Source: ORCID
Added: January 6, 2022

2021 journal article

Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots

LIFE-BASEL, 11(10).

By: J. Sheppard n, E. Land, T. Toennisson n, C. Doherty & I. Perera

author keywords: spaceflight; fractional gravity; RNA-seq; Arabidopsis; gene expression; heat shock proteins
Sources: ORCID, Web Of Science
Added: September 28, 2021

2021 journal article

Warm nights disrupt transcriptome rhythms in field-grown rice panicles

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).

author keywords: climate change impact; nighttime temperature increase; global food security; diel transcriptional networks
Sources: ORCID, Web Of Science
Added: June 22, 2021

2020 journal article

A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber

SCIENTIFIC REPORTS, 10(1).

By: A. Vennapusa*, I. Somayanda*, C. Doherty & S. Jagadish*

Sources: ORCID, Web Of Science
Added: January 25, 2021

2020 journal article

Current status of the multinational Arabidopsis community

Plant Direct, 4(7).

author keywords: Arabidopsis thaliana; collaboration; Research Network; roadmap
Source: ORCID
Added: April 1, 2022

2020 article

Detection of Gray Mold Infection in Plants Using a Multispectral Imaging System

Scarboro, C. G., Ruzsa, S. M., Doherty, C. J., & Kudenov, M. W. (2020, April 25). (Vol. 4). Vol. 4.

By: C. Scarboro n, S. Ruzsa n, C. Doherty & M. Kudenov n

Source: ORCID
Added: April 26, 2020

2019 journal article

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome

RNA, 25(6), 669–684.

author keywords: Oryza sativa; differential gene expression; splicing; reference genome; RNA-seq; transcriptome analysis
Sources: Web Of Science, ORCID
Added: June 4, 2019

2019 journal article

Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future

PLANT DIRECT, 3(1).

By: C. Doherty, J. Friesner, B. Gregory, A. Loraine, M. Megraw, B. Meyers, N. Provart, R. Slotkin ...

author keywords: Arabidopsis; informatics; international collaboration; portal; The Arabidopsis Information Resource
Sources: Web Of Science, ORCID
Added: February 17, 2020

2019 journal article

Directions for research and training in plant omics: Big Questions and Big Data

Plant Direct, 3(4), e00133.

author keywords: genomics; metabolomics; proteomics; training; transcriptomics
Sources: ORCID, Crossref
Added: June 25, 2019

2019 journal article

New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum

J. Exp. Bot, 4.

By: N. Moghimi*, J. Desai n, R. Bheemanahalli, S. Impa*, A. Vennapusa*, D. Sebela*, R. Perumal*, C. Doherty, S. Jagadish*

author keywords: Candidate genes; chilling stress; genome-wide association mapping; genomic regions; root-shoot; sorghum
Source: ORCID
Added: June 25, 2019

2019 journal article

Novel transcriptional responses to heat revealed by turning up the heat at night

Plant Molecular Biology, 101(1-2), 1–19.

By: D. Grinevich n, J. Desai n, K. Stroup n, J. Duan n, E. Slabaugh n & C. Doherty

author keywords: Heat shock; Diel regulation; Transcriptional networks; Abiotic stress; Gating of plant responses; Circadian clock
Source: ORCID
Added: June 25, 2019

2019 journal article

Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals

Phytochemistry Reviews, 18(6), 1409–1433.

By: D. Liebelt n, J. Jordan n & C. Doherty

author keywords: Diel; Time of day; Temporal regulation; Circadian rhythms; Photoperiod responses; Environmental regulation; Specialized metabolites; Phenols; Flavonoids; Terpenoids; Alkaloids
Source: ORCID
Added: August 15, 2019

2019 article

Warm nights disrupt global transcriptional rhythms in field-grown rice panicles

Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). (Vol. 7). Vol. 7.

Source: ORCID
Added: July 17, 2019

2018 journal article

Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance

FRONTIERS IN PLANT SCIENCE, 9.

By: J. Desai, E. Slabaugh, D. Liebelt, J. Fredenberg n, B. Gray*, S. Jagadish*, O. Wilkins*, C. Doherty

author keywords: flower opening time; spikelet opening time; timing of anthesis; setaria; developmental stage; image analysis of plants; biological image classification
Sources: Web Of Science, ORCID
Added: November 12, 2018

2017 journal article

Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes

Scientific Reports.

By: J. Desai n, R. Sartor*, L. Lawas*, S. Jagadish* & C. Doherty

Source: ORCID
Added: June 25, 2019

2017 journal article

Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors

CURRENT BIOLOGY, 27(3), 437–444.

By: E. Shani*, M. Salehin*, Y. Zhang*, S. Sanchez*, C. Doherty, R. Wang*, C. Mangado*, L. Song* ...

Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 article

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology

Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., … Brady, S. M. (2017, December). PLANT PHYSIOLOGY, Vol. 175, pp. 1499–1509.

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes

Desai, J. S., Sartor, R. C., Lawas, L. M., Jagadish, S. V. K., & Doherty, C. J. (2016, December 24). (Vol. 12). Vol. 12.

By: J. Desai n, R. Sartor*, L. Lawas*, S. Jagadish* & C. Doherty

Source: ORCID
Added: June 25, 2019

2015 journal article

Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.

Proceedings of the National Academy of Sciences of the United States of America.

author keywords: genome-wide; circadian clock; clock-controlled outputs; transcriptional regulation
Source: ORCID
Added: January 25, 2021

2015 journal article

Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.

The Plant Journal : for Cell and Molecular Biology.

author keywords: CBF regulatory pathway; low-temperature regulatory network; freezing tolerance; Arabidopsis thaliana
Source: ORCID
Added: January 25, 2021

2014 journal article

A genome-scale resource for the functional characterization of Arabidopsis transcription factors.

Cell Reports.

Source: ORCID
Added: June 25, 2019

2012 journal article

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.

Proceedings of the National Academy of Sciences of the United States of America.

author keywords: transcriptional regulation; transcriptional potential; gene networks; circadian outputs; diurnal
Source: ORCID
Added: June 25, 2019

2012 journal article

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses.

Proceedings of the National Academy of Sciences of the United States of America.

author keywords: redox homeostasis; transcriptional coordination
Source: ORCID
Added: January 25, 2021

2012 journal article

Circadian surprise--it's not all about transcription.

Science (New York, N.Y.).

Source: ORCID
Added: January 25, 2021

2011 journal article

A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana.

Journal of Experimental Botany.

author keywords: Arabidopsis; CBF regulon; freezing tolerance; low temperature transcriptome; Solanum species
Source: ORCID
Added: January 25, 2021

2010 journal article

Circadian control of global gene expression patterns.

Annual Review of Genetics.

author keywords: transcriptome; network analysis; transcriptional regulation; microarray analysis; systems biology
Source: ORCID
Added: January 25, 2021

2009 journal article

Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance.

The Plant Cell.

Source: ORCID
Added: January 25, 2021

Employment

2014 - present

North Carolina State University Raleigh, NC, US
Associate Professor Molecular and Structural Biochemistry

2008 - 2013

University of California San Diego La Jolla, CA, US
Postdoctoral Researcher

Education

2002 - 2008

Michigan State University East Lansing, MI, US
PhD Biochemistry and Molecular Biology