Works (44)

Updated: March 2nd, 2024 07:07

2024 article

A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses

Laosuntisuk, K., Vennapusa, A., Somayanda, I. M., Leman, A. R., Jagadish, S. V. K., & Doherty, C. J. (2024, January 30). PLANT JOURNAL, Vol. 1.

co-author countries: United States of America 🇺🇸
author keywords: gene expression; RNA-Seq; normalization methods; Sorghum bicolor; abiotic stress responses; diel transcriptional changes
Sources: ORCID, Web Of Science
Added: February 1, 2024

2024 journal article

Conserved plant transcriptional responses to microgravity from two consecutive spaceflight experiments

FRONTIERS IN PLANT SCIENCE, 14.

By: E. Land n , J. Sheppard  n, C. Doherty n  & I. Perera n 

co-author countries: United States of America 🇺🇸
author keywords: transcriptional profiling; adaptation to spaceflight; Arabidopsis; microgravity (mu g); plants
Sources: Web Of Science, ORCID
Added: February 1, 2024

2024 article

Flexible Self-Powered Organic Photodetector with High Detectivity for Continuous On-Plant Sensing

Schrickx, H. M., Gyurek, S., Moore, C., Hernandez-Pagan, E., Doherty, C. J., Kudenov, M. W., & Brendan T. O'Connor. (2024, February 8). ADVANCED OPTICAL MATERIALS, Vol. 2.

By: H. Schrickx n, S. Gyurek n, C. Moore n, E. Hernandez-Pagan n, C. Doherty n , M. Kudenov n, . Brendan T. O'Connor  n

co-author countries: United States of America 🇺🇸
author keywords: flexible photodetector; on-plant sensing; organic photodetector; plant health monitoring; self-powered photodetector; soil remediation
Sources: Web Of Science, ORCID
Added: February 19, 2024

2023 article

A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses

Laosuntisuk, K., Vennapusa, A., Somayanda, I. M., Leman, A. R., Jagadish, S. V. K., & Doherty, C. J. (2023, October 29).

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: February 1, 2024

2023 review

Auxin-cytokinin interplay shapes root functionality under low-temperature stress

[Review of ]. TRENDS IN PLANT SCIENCE, 28(4), 447–459.

By: M. Tiwari *, R. Kumar *, S. Subramanian *, C. Doherty n  & S. Jagadish*

co-author countries: United States of America 🇺🇸
MeSH headings : Cytokinins / physiology; Indoleacetic Acids; Temperature; Meristem / genetics; Plant Roots / physiology; Arabidopsis Proteins / metabolism; Arabidopsis / genetics; Gene Expression Regulation, Plant / genetics
Sources: Web Of Science, ORCID
Added: April 17, 2023

2023 journal article

Comparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple

SCIENTIFIC REPORTS, 13(1).

By: A. Yow , K. Laosuntisuk, R. Young, C. Doherty , N. Gillitt, P. Perkins-Veazie, Q. Jenny Xiang, M. Iorizzo

Sources: Web Of Science, ORCID
Added: February 26, 2024

2023 journal article

Hybrid spatial-temporal Mueller matrix imaging spectropolarimeter for high throughput plant phenotyping

APPLIED OPTICS, 62(8), 2078–2091.

By: M. Kudenov n, D. Krafft n, C. Scarboro  n, C. Doherty n  & P. Balint-Kurti n 

co-author countries: United States of America 🇺🇸
MeSH headings : Multimodal Imaging; Spectrum Analysis; Plant Leaves; Zea mays
Sources: Web Of Science, ORCID
Added: April 11, 2023

2023 review

The Game of Timing: Circadian Rhythms Intersect with Changing Environments

[Review of ]. ANNUAL REVIEW OF PLANT BIOLOGY, 74, 511–538.

By: K. Laosuntisuk n, E. Elorriaga  n & C. Doherty n 

co-author countries: United States of America 🇺🇸
author keywords: circadian; rhythms; climate change; signaling networks; environmental adaptation
MeSH headings : Plant Breeding; Circadian Rhythm / physiology; Circadian Clocks; Signal Transduction
Sources: Web Of Science, ORCID
Added: June 12, 2023

2023 journal article

Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions

AOB PLANTS, 15(3).

co-author countries: United States of America 🇺🇸
author keywords: plant-plant interaction; gene regulation; network analysis
Sources: Web Of Science, ORCID
Added: June 5, 2023

2022 article

Arabidopsis cell suspension culture that lacks circadian rhythms can be recovered by constitutive ELF3 expression

Laosuntisuk, K., Desai, J. S., & Doherty, C. J. (2022, May 13). (Vol. 5). Vol. 5.

By: K. Laosuntisuk  n, J. Desai  n & C. Doherty n 

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: May 20, 2022

2022 article

Assessing the Nucleotide-Level Impact of Spaceflight Stress using RNA-Sequencing Data

Knight, M. S., Doherty, C. J., & Nielsen, D. M. (2022, December 2).

By: M. Knight n , C. Doherty n  & D. Nielsen n 

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: December 3, 2022

2022 article

Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses

PLANT GRAVITROPISM, Vol. 2368, pp. 301–319.

By: J. Tolsma  n, J. Torres *, J. Richards*, I. Perera n  & C. Doherty n 

co-author countries: United States of America 🇺🇸
author keywords: Circadian; Gravistimulation; Time of day; Diel; Simulated microgravity
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Circadian Clocks; Circadian Rhythm; Gene Expression Regulation, Plant; Gravitropism; Photoperiod
Sources: ORCID, Web Of Science
Added: October 14, 2021

2022 journal article

Multistatic fiber-based system for measuring the Mueller matrix bidirectional reflectance distribution function

APPLIED OPTICS, 61(33), 9832–9842.

By: C. Scarboro n, C. Doherty n , P. Balint-Kurti n  & M. Kudenov n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: December 12, 2022

2022 review

The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures

[Review of ]. BIOCHEMICAL SOCIETY TRANSACTIONS, 50(3), 1151–1165.

By: K. Laosuntisuk n & C. Doherty n 

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Circadian Clocks / genetics; Circadian Rhythm; Gene Expression Regulation, Plant; Hypocotyl / metabolism; Temperature; Transcription Factors / metabolism
Sources: ORCID, Web Of Science
Added: June 28, 2022

2021 article

Fieldable Mueller matrix imaging spectropolarimeter using a hybrid spatial and temporal modulation scheme

POLARIZATION SCIENCE AND REMOTE SENSING X, Vol. 11833.

By: M. Kudenov n, D. Krafft n, C. Scarboro  n, C. Doherty n  & P. Balint-Kurti n 

co-author countries: United States of America 🇺🇸
author keywords: Mueller matrix; polarimetry; imaging; temporal; spatial; modulation; plants
Sources: Web Of Science, ORCID
Added: March 21, 2022

2021 journal article

Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice

SCIENTIFIC REPORTS, 11(1).

By: R. Bheemanahalli *, M. Knight n , C. Quinones*, C. Doherty n  & S. Jagadish

co-author countries: Philippines 🇵🇭 United States of America 🇺🇸
MeSH headings : Computational Biology / methods; Edible Grain / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genetic Association Studies; Genome-Wide Association Study / methods; Oryza / genetics; Phenotype; Stress, Physiological; Temperature
Sources: ORCID, Web Of Science
Added: March 25, 2021

2021 journal article

Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions

PLANT DIRECT, 5(3).

By: C. Scarboro  n, S. Ruzsa n, C. Doherty n  & M. Kudenov n

co-author countries: United States of America 🇺🇸
author keywords: disease detection; gray mold; hyperspectral imaging; multispectral imaging; plant pathology; reflectance indexing
Sources: ORCID, Web Of Science
Added: March 25, 2021

2021 journal article

The Circadian-clock Regulates the Arabidopsis Gravitropic Response

Gravitational and Space Research.

By: J. Tolsma  n, K. Ryan  n, J. Torres *, J. Richards*, Z. Richardson n, E. Land n , I. Perera n , C. Doherty n 

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: January 6, 2022

2021 journal article

Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots

LIFE-BASEL, 11(10).

By: J. Sheppard  n, E. Land n , T. Toennisson n, C. Doherty n  & I. Perera n 

co-author countries: United States of America 🇺🇸
author keywords: spaceflight; fractional gravity; RNA-seq; Arabidopsis; gene expression; heat shock proteins
Sources: ORCID, Web Of Science
Added: September 28, 2021

2021 journal article

Warm nights disrupt transcriptome rhythms in field-grown rice panicles

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).

By: J. Desai n, L. Lawas *, A. Valente, A. Leman, D. Grinevich n, S. Jagadish*, C. Doherty n 

co-author countries: Philippines 🇵🇭 United States of America 🇺🇸
author keywords: climate change impact; nighttime temperature increase; global food security; diel transcriptional networks
MeSH headings : Agriculture; Biomass; Circadian Rhythm / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes, Plant; Oryza / genetics; Oryza / growth & development; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reproducibility of Results; Temperature; Time Factors; Transcription Factors / metabolism; Transcription, Genetic; Transcriptome / genetics
Sources: ORCID, Web Of Science
Added: June 22, 2021

2020 journal article

A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber

SCIENTIFIC REPORTS, 10(1).

By: A. Vennapusa *, I. Somayanda *, C. Doherty n  & S. Jagadish*

co-author countries: United States of America 🇺🇸
MeSH headings : Dietary Fiber; Electrophoresis, Polyacrylamide Gel / methods; Plant Proteins; Plants / chemistry; Plants / genetics; RNA, Plant / isolation & purification; Seeds / chemistry; Seeds / genetics; Solid Phase Extraction / methods; Spectrophotometry; Starch
Sources: ORCID, Web Of Science
Added: January 25, 2021

2020 journal article

Current status of the multinational Arabidopsis community

Plant Direct, 4(7).

Colleen Doherty

author keywords: Arabidopsis thaliana; collaboration; Research Network; roadmap
Source: ORCID
Added: April 1, 2022

2020 article

Detection of Gray Mold Infection in Plants Using a Multispectral Imaging System

Scarboro, C. G., Ruzsa, S. M., Doherty, C. J., & Kudenov, M. W. (2020, April 25). (Vol. 4). Vol. 4.

By: C. Scarboro  n, S. Ruzsa n, C. Doherty n  & M. Kudenov  n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: April 26, 2020

2019 journal article

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome

RNA, 25(6), 669–684.

By: E. Slabaugh n, J. Desai n, R. Sartor n, L. Lawas *, S. Krishna Jagadish* & C. Doherty n 

co-author countries: Germany 🇩🇪 Philippines 🇵🇭 United States of America 🇺🇸
author keywords: Oryza sativa; differential gene expression; splicing; reference genome; RNA-seq; transcriptome analysis
MeSH headings : Alternative Splicing; Base Sequence; Chromosome Mapping / methods; Gene Expression Profiling / standards; Genes, Essential; Genome, Plant; High-Throughput Nucleotide Sequencing; Oryza / classification; Oryza / genetics; Oryza / metabolism; Polymorphism, Single Nucleotide; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reference Standards; Sequence Alignment; Transcriptome
Sources: Web Of Science, ORCID
Added: June 4, 2019

2019 journal article

Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future

PLANT DIRECT, 3(1).

By: C. Doherty* , J. Friesner, B. Gregory, A. Loraine, M. Megraw, B. Meyers, N. Provart, R. Slotkin ...

author keywords: Arabidopsis; informatics; international collaboration; portal; The Arabidopsis Information Resource
Sources: Web Of Science, ORCID
Added: February 17, 2020

2019 journal article

Directions for research and training in plant omics: Big Questions and Big Data

Plant Direct, 3(4), e00133.

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
author keywords: genomics; metabolomics; proteomics; training; transcriptomics
Sources: ORCID, Crossref
Added: June 25, 2019

2019 journal article

New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum

J. Exp. Bot, 4.

By: N. Moghimi*, J. Desai  n, R. Bheemanahalli *, S. Impa *, A. Vennapusa *, D. Sebela*, R. Perumal*, C. Doherty n , S. Jagadish

co-author countries: United States of America 🇺🇸
author keywords: Candidate genes; chilling stress; genome-wide association mapping; genomic regions; root-shoot; sorghum
MeSH headings : Chromosome Mapping; Cold Temperature; Crop Production; Genes, Plant; Genetic Markers; Sorghum / genetics; Stress, Physiological / genetics
Source: ORCID
Added: June 25, 2019

2019 journal article

Novel transcriptional responses to heat revealed by turning up the heat at night

Plant Molecular Biology, 101(1-2), 1–19.

By: D. Grinevich n, J. Desai  n, K. Stroup n, J. Duan n, E. Slabaugh  n & C. Doherty n 

co-author countries: United States of America 🇺🇸
author keywords: Heat shock; Diel regulation; Transcriptional networks; Abiotic stress; Gating of plant responses; Circadian clock
MeSH headings : Acclimatization; Arabidopsis / genetics; Arabidopsis / physiology; Circadian Clocks / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Genome, Plant / genetics; Heat-Shock Proteins / genetics; Heat-Shock Response / genetics; Hot Temperature; Seedlings / genetics; Seedlings / physiology; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
Source: ORCID
Added: June 25, 2019

2019 journal article

Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals

Phytochemistry Reviews, 18(6), 1409–1433.

By: D. Liebelt n, J. Jordan n & C. Doherty n 

co-author countries: United States of America 🇺🇸
author keywords: Diel; Time of day; Temporal regulation; Circadian rhythms; Photoperiod responses; Environmental regulation; Specialized metabolites; Phenols; Flavonoids; Terpenoids; Alkaloids
Source: ORCID
Added: August 15, 2019

2019 article

Warm nights disrupt global transcriptional rhythms in field-grown rice panicles

Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). (Vol. 7). Vol. 7.

By: J. Desai  n, L. Lawas *, A. Valente*, A. Leman *, D. Grinevich n, S. Jagadish*, C. Doherty n 

co-author countries: Germany 🇩🇪 Philippines 🇵🇭 United States of America 🇺🇸
Source: ORCID
Added: July 17, 2019

2018 journal article

Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance

FRONTIERS IN PLANT SCIENCE, 9.

By: J. Desai n, E. Slabaugh n, D. Liebelt n, J. Fredenberg n, B. Gray*, S. Jagadish*, O. Wilkins *, C. Doherty n 

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
author keywords: flower opening time; spikelet opening time; timing of anthesis; setaria; developmental stage; image analysis of plants; biological image classification
Sources: Web Of Science, ORCID
Added: November 12, 2018

2017 journal article

Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes

Scientific Reports.

By: J. Desai  n, R. Sartor*, L. Lawas *, S. Jagadish* & C. Doherty n 

co-author countries: Germany 🇩🇪 Philippines 🇵🇭 United States of America 🇺🇸
MeSH headings : Algorithms; Animals; Circadian Clocks / genetics; Computational Biology / methods; Gene Regulatory Networks; Humans; Mice; Transcription Factors / metabolism; Transcription, Genetic
Source: ORCID
Added: June 25, 2019

2017 journal article

Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors

CURRENT BIOLOGY, 27(3), 437–444.

By: E. Shani *, M. Salehin*, Y. Zhang *, S. Sanchez *, C. Doherty n , R. Wang*, C. Mangado, L. Song * ...

co-author countries: Israel 🇮🇱 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / physiology; Arabidopsis Proteins / antagonists & inhibitors; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant / drug effects; Indoleacetic Acids / metabolism; Plant Growth Regulators / metabolism; Plants, Genetically Modified; Repressor Proteins / genetics; Repressor Proteins / metabolism; Stress, Physiological
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 article

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology

Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., … Brady, S. M. (2017, December). PLANT PHYSIOLOGY, Vol. 175, pp. 1499–1509.

By: J. Friesner *, S. Assmann *, R. Bastow*, J. Bailey-Serres *, J. Beynon *, V. Brendel*, C. Buell *, A. Bucksch * ...

co-author countries: Austria 🇦🇹 Canada 🇨🇦 Chile 🇨🇱 China 🇨🇳 Germany 🇩🇪 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Japan 🇯🇵 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Computational Biology / education; Cooperative Behavior; Faculty; Phenotype; Research / education
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes

Desai, J. S., Sartor, R. C., Lawas, L. M., Jagadish, S. V. K., & Doherty, C. J. (2016, December 24). (Vol. 12). Vol. 12.

By: J. Desai  n, R. Sartor*, L. Lawas *, S. Jagadish* & C. Doherty n 

co-author countries: Philippines 🇵🇭 United States of America 🇺🇸
Source: ORCID
Added: June 25, 2019

2015 journal article

Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.

Proceedings of the National Academy of Sciences of the United States of America.

Colleen Doherty

author keywords: genome-wide; circadian clock; clock-controlled outputs; transcriptional regulation
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Genome, Plant; Transcription Factors / genetics; Transcriptome
Source: ORCID
Added: January 25, 2021

2015 journal article

Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.

The Plant Journal : for Cell and Molecular Biology.

Colleen Doherty

author keywords: CBF regulatory pathway; low-temperature regulatory network; freezing tolerance; Arabidopsis thaliana
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cold Temperature; Gene Expression Regulation, Plant; Regulon / genetics
Source: ORCID
Added: January 25, 2021

2014 journal article

A genome-scale resource for the functional characterization of Arabidopsis transcription factors.

Cell Reports.

Colleen Doherty

MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Gene Expression Regulation, Plant; Genome, Plant; Transcription Factors / genetics
Source: ORCID
Added: June 25, 2019

2012 journal article

Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.

Proceedings of the National Academy of Sciences of the United States of America.

Colleen Doherty

author keywords: transcriptional regulation; transcriptional potential; gene networks; circadian outputs; diurnal
MeSH headings : Amino Acid Sequence; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Base Sequence; Circadian Clocks / genetics; DNA, Plant / metabolism; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Gene Expression Regulation, Plant; Genes, Plant / genetics; Molecular Sequence Data; Promoter Regions, Genetic / genetics; Protein Binding; Protein Structure, Tertiary; Repressor Proteins / metabolism; Transcription Factors / chemistry; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription, Genetic
Source: ORCID
Added: June 25, 2019

2012 journal article

CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses.

Proceedings of the National Academy of Sciences of the United States of America.

Colleen Doherty

author keywords: redox homeostasis; transcriptional coordination
MeSH headings : Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Arabidopsis Proteins / physiology; Chromatin Immunoprecipitation; Computational Biology; Gene Expression Regulation, Plant / genetics; Gene Expression Regulation, Plant / physiology; Homeostasis / genetics; Homeostasis / physiology; Luminescent Measurements; Mutation / genetics; Oxidative Stress / physiology; Polymerase Chain Reaction; Reactive Oxygen Species / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription Factors / physiology
Source: ORCID
Added: January 25, 2021

2012 journal article

Circadian surprise--it's not all about transcription.

Science (New York, N.Y.).

Colleen Doherty

MeSH headings : Animals; CLOCK Proteins / genetics; Chromatin / metabolism; Circadian Clocks / genetics; Circadian Rhythm / genetics; Cryptochromes / genetics; Epigenesis, Genetic; Gene Expression Regulation; Liver / physiology; Male; RNA-Binding Proteins / metabolism; Transcription, Genetic; Transcriptional Activation
Source: ORCID
Added: January 25, 2021

2011 journal article

A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana.

Journal of Experimental Botany.

Colleen Doherty

author keywords: Arabidopsis; CBF regulon; freezing tolerance; low temperature transcriptome; Solanum species
MeSH headings : Acclimatization; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Core Binding Factors / genetics; Core Binding Factors / metabolism; Freezing; Gene Expression Regulation, Plant; Plant Proteins / genetics; Plant Proteins / metabolism; Regulon; Solanum / genetics; Solanum / metabolism; Solanum / physiology; Solanum tuberosum / genetics; Solanum tuberosum / metabolism; Solanum tuberosum / physiology; Species Specificity; Transcription Factors / genetics; Transcription Factors / physiology; Transcription, Genetic / genetics
Source: ORCID
Added: January 25, 2021

2010 journal article

Circadian control of global gene expression patterns.

Annual Review of Genetics.

Colleen Doherty

author keywords: transcriptome; network analysis; transcriptional regulation; microarray analysis; systems biology
MeSH headings : Animals; Arabidopsis / genetics; Arabidopsis / physiology; Circadian Clocks; Circadian Rhythm; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Gene Expression Regulation; Humans; Mice
Source: ORCID
Added: January 25, 2021

2009 journal article

Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance.

The Plant Cell.

Colleen Doherty

MeSH headings : Adaptation, Biological; Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Base Sequence; Calmodulin-Binding Proteins / genetics; Calmodulin-Binding Proteins / metabolism; Cold Temperature; Freezing; Gene Expression Regulation, Plant; Genes, Reporter; Molecular Sequence Data; Promoter Regions, Genetic; Signal Transduction / physiology; Trans-Activators / genetics; Trans-Activators / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription, Genetic
Source: ORCID
Added: January 25, 2021

Employment

Updated: August 10th, 2023 09:25

2020 - present

NC State University Raleigh, NC, US
Associate Professor Molecular and Structural Biochemistry

2014 - 2020

North Carolina State University Raleigh, North Carolina, US
Assistant Professor Biochemistry

2008 - 2013

University of California San Diego La Jolla, CA, US
Postdoctoral Researcher

Education

Updated: April 10th, 2014 19:43

2002 - 2008

Michigan State University East Lansing, MI, US
PhD Biochemistry and Molecular Biology

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