2024 article
A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses
Laosuntisuk, K., Vennapusa, A., Somayanda, I. M., Leman, A. R., Jagadish, S. V. K., & Doherty, C. J. (2024, January 30). PLANT JOURNAL, Vol. 1.
2024 journal article
An Arabidopsis Cell Culture With Weak Circadian Rhythms Under Constant Light Compared With Constant Dark Can Be Rescued by ELF3
PLANT DIRECT, 8(11), 1–16.
2024 journal article
Conserved plant transcriptional responses to microgravity from two consecutive spaceflight experiments
FRONTIERS IN PLANT SCIENCE, 14.
2024 article
Flexible Self-Powered Organic Photodetector with High Detectivity for Continuous On-Plant Sensing
Schrickx, H. M., Gyurek, S., Moore, C., Hernandez-Pagan, E., Doherty, C. J., Kudenov, M. W., & Brendan T. O'Connor. (2024, February 8). ADVANCED OPTICAL MATERIALS, Vol. 2.
2024 journal article
Mitigating Illumination-, Leaf-, and View-Angle Dependencies in Hyperspectral Imaging Using Polarimetry
Plant Phenomics.
2023 article
A normalization method that controls for total RNA abundance affects the identification of differentially expressed genes, revealing bias toward morning-expressed responses
Laosuntisuk, K., Vennapusa, A., Somayanda, I. M., Leman, A. R., Jagadish, S. V. K., & Doherty, C. J. (2023, October 29).
2023 review
Auxin-cytokinin interplay shapes root functionality under low-temperature stress
[Review of ]. TRENDS IN PLANT SCIENCE, 28(4), 447–459.
2023 journal article
Comparative transcriptome analysis reveals candidate genes for cold stress response and early flowering in pineapple
SCIENTIFIC REPORTS, 13(1).
2023 journal article
Hybrid spatial-temporal Mueller matrix imaging spectropolarimeter for high throughput plant phenotyping
APPLIED OPTICS, 62(8), 2078–2091.
2023 review
The Game of Timing: Circadian Rhythms Intersect with Changing Environments
[Review of ]. ANNUAL REVIEW OF PLANT BIOLOGY, 74, 511–538.
2023 journal article
Weed-induced changes in the maize root transcriptome reveal transcription factors and physiological processes impacted early in crop-weed interactions
AOB PLANTS, 15(3).
2022 article
Arabidopsis cell suspension culture that lacks circadian rhythms can be recovered by constitutive ELF3 expression
Laosuntisuk, K., Desai, J. S., & Doherty, C. J. (2022, May 13). (Vol. 5). Vol. 5.
2022 article
Assessing the Nucleotide-Level Impact of Spaceflight Stress using RNA-Sequencing Data
Knight, M. S., Doherty, C. J., & Nielsen, D. M. (2022, December 2).
2022 journal article
Multistatic fiber-based system for measuring the Mueller matrix bidirectional reflectance distribution function
APPLIED OPTICS, 61(33), 9832–9842.
2022 review
The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures
[Review of ]. BIOCHEMICAL SOCIETY TRANSACTIONS, 50(3), 1151–1165.
2021 article
Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses
PLANT GRAVITROPISM, Vol. 2368, pp. 301–319.
2021 article
Fieldable Mueller matrix imaging spectropolarimeter using a hybrid spatial and temporal modulation scheme
POLARIZATION SCIENCE AND REMOTE SENSING X, Vol. 11833.
2021 journal article
Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice
SCIENTIFIC REPORTS, 11(1).
2021 journal article
Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions
PLANT DIRECT, 5(3).
2021 journal article
The Circadian-clock Regulates the Arabidopsis Gravitropic Response
Gravitational and Space Research.
2021 journal article
Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots
LIFE-BASEL, 11(10).
2021 journal article
Warm nights disrupt transcriptome rhythms in field-grown rice panicles
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).
2020 journal article
A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber
SCIENTIFIC REPORTS, 10(1).
2020 journal article
Current status of the multinational Arabidopsis community
Plant Direct, 4(7).
2020 article
Detection of Gray Mold Infection in Plants Using a Multispectral Imaging System
Scarboro, C. G., Ruzsa, S. M., Doherty, C. J., & Kudenov, M. W. (2020, April 25).
2019 journal article
Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome
RNA, 25(6), 669–684.
2019 journal article
Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future
PLANT DIRECT, 3(1).
2019 journal article
Directions for research and training in plant omics: Big Questions and Big Data
Plant Direct, 3(4), e00133.
2019 journal article
New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum
J. Exp. Bot, 4.
2019 journal article
Novel transcriptional responses to heat revealed by turning up the heat at night
Plant Molecular Biology, 101(1-2), 1–19.
2019 journal article
Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals
Phytochemistry Reviews, 18(6), 1409–1433.
2019 article
Warm nights disrupt global transcriptional rhythms in field-grown rice panicles
Desai, J. S., Lawas, L. M. F., Valente, A. M., Leman, A. R., Grinevich, D. O., Jagadish, S. V. K., & Doherty, C. J. (2019, July 16). (Vol. 7). Vol. 7.
2018 journal article
Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance
FRONTIERS IN PLANT SCIENCE, 9.
2017 journal article
Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes
Scientific Reports.
2017 journal article
Plant Stress Tolerance Requires Auxin-Sensitive Aux/IAA Transcriptional Repressors
CURRENT BIOLOGY, 27(3), 437–444.
2017 article
The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology
Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., … Brady, S. M. (2017, December). PLANT PHYSIOLOGY, Vol. 175, pp. 1499–1509.
2016 article
Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes
Desai, J. S., Sartor, R. C., Lawas, L. M., Jagadish, S. V. K., & Doherty, C. J. (2016, December 24).
2015 journal article
Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.
Proceedings of the National Academy of Sciences of the United States of America.
2015 journal article
Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.
The Plant Journal : for Cell and Molecular Biology.
2014 journal article
A genome-scale resource for the functional characterization of Arabidopsis transcription factors.
Cell Reports.
2012 journal article
Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.
Proceedings of the National Academy of Sciences of the United States of America.
2012 journal article
CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses.
Proceedings of the National Academy of Sciences of the United States of America.
2012 journal article
Circadian surprise--it's not all about transcription.
Science (New York, N.Y.).
2011 journal article
A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana.
Journal of Experimental Botany.
2010 journal article
Circadian control of global gene expression patterns.
Annual Review of Genetics.
2009 journal article
Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance.
The Plant Cell.
Updated: August 10th, 2023 09:25
2020 - present
2014 - 2020
2008 - 2013
Updated: April 10th, 2014 19:43
2002 - 2008
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