@article{laosuntisuk_desai_doherty_2022, title={Arabidopsis cell suspension culture that lacks circadian rhythms can be recovered by constitutive ELF3 expression}, volume={5}, url={https://doi.org/10.1101/2022.05.12.491735}, DOI={10.1101/2022.05.12.491735}, publisher={Cold Spring Harbor Laboratory}, author={Laosuntisuk, Kanjana and Desai, Jigar S. and Doherty, Colleen J.}, year={2022}, month={May} }
 @article{knight_doherty_nielsen_2022, title={Assessing the Nucleotide-Level Impact of Spaceflight Stress using RNA-Sequencing Data}, url={https://doi.org/10.1101/2022.12.01.518235}, DOI={10.1101/2022.12.01.518235}, author={Knight, Montana S. and Doherty, Colleen J. and Nielsen, Dahlia M.}, year={2022}, month={Dec} }
 @article{tolsma_torres_richards_perera_doherty_2022, title={Evaluating the Effects of the Circadian Clock and Time of Day on Plant Gravitropic Responses}, volume={2368}, ISBN={["978-1-0716-1676-5"]}, ISSN={["1940-6029"]}, url={https://doi.org/10.1007/978-1-0716-1677-2_19}, DOI={10.1007/978-1-0716-1677-2_19}, journal={PLANT GRAVITROPISM}, publisher={Springer US}, author={Tolsma, Joseph S. and Torres, Jacob J. and Richards, Jeffrey T. and Perera, Imara Y. and Doherty, Colleen J.}, year={2022}, pages={301–319} }
 @article{scarboro_doherty_balint-kurti_kudenov_2022, title={Multistatic fiber-based system for measuring the Mueller matrix bidirectional reflectance distribution function}, volume={61}, ISSN={["2155-3165"]}, DOI={10.1364/AO.470608}, number={33}, journal={APPLIED OPTICS}, author={Scarboro, Clifton G. and Doherty, Colleen J. and Balint-Kurti, Peter J. and Kudenov, Michael W.}, year={2022}, month={Nov}, pages={9832–9842} }
 @misc{laosuntisuk_doherty_2022, title={The intersection between circadian and heat-responsive regulatory networks controls plant responses to increasing temperatures}, volume={50}, ISSN={["1470-8752"]}, url={https://doi.org/10.1042/BST20190572}, DOI={10.1042/BST20190572}, number={3}, journal={BIOCHEMICAL SOCIETY TRANSACTIONS}, publisher={Portland Press Ltd.}, author={Laosuntisuk, Kanjana and Doherty, Colleen J.}, year={2022}, month={Jun}, pages={1151–1165} }
 @article{kudenov_krafft_scarboro_doherty_balint-kurti_2021, title={Fieldable Mueller matrix imaging spectropolarimeter using a hybrid spatial and temporal modulation scheme}, volume={11833}, ISSN={["1996-756X"]}, DOI={10.1117/12.2593970}, journal={POLARIZATION SCIENCE AND REMOTE SENSING X}, author={Kudenov, Michael W. and Krafft, Danny and Scarboro, Clifton G. and Doherty, Colleen J. and Balint-Kurti, Peter}, year={2021} }
 @article{bheemanahalli_knight_quinones_doherty_jagadish_2021, title={Genome-wide association study and gene network analyses reveal potential candidate genes for high night temperature tolerance in rice}, volume={11}, ISBN={2045-2322}, url={https://doi.org/10.1038/s41598-021-85921-z}, DOI={10.1038/s41598-021-85921-z}, number={1}, journal={SCIENTIFIC REPORTS}, author={Bheemanahalli, Raju and Knight, Montana and Quinones, Cherryl and Doherty, Colleen J. and Jagadish, S. V. Krishna}, year={2021} }
 @article{scarboro_ruzsa_doherty_kudenov_2021, title={Quantification of gray mold infection in lettuce using a bispectral imaging system under laboratory conditions}, volume={5}, ISBN={2475-4455}, url={https://doi.org/10.1002/pld3.317}, DOI={10.1002/pld3.317}, number={3}, journal={PLANT DIRECT}, publisher={Wiley}, author={Scarboro, Clifton G. and Ruzsa, Stephanie M. and Doherty, Colleen J. and Kudenov, Michael W.}, year={2021}, month={Mar} }
 @article{tolsma_ryan_torres_richards_richardson_land_perera_doherty_2021, title={The Circadian-clock Regulates the Arabidopsis Gravitropic Response}, url={https://doi.org/10.2478/gsr-2021-0014}, DOI={10.2478/gsr-2021-0014}, journal={Gravitational and Space Research}, author={Tolsma, Joseph S. and Ryan, Kaetlyn T. and Torres, Jacob J. and Richards, Jeffrey T. and Richardson, Zach and Land, Eric S. and Perera, Imara Y. and Doherty, Colleen J}, year={2021}, month={Jan} }
 @article{sheppard_land_toennisson_doherty_perera_2021, title={Uncovering Transcriptional Responses to Fractional Gravity in Arabidopsis Roots}, volume={11}, ISSN={["2075-1729"]}, url={https://doi.org/10.3390/life11101010}, DOI={10.3390/life11101010}, number={10}, journal={LIFE-BASEL}, author={Sheppard, James and Land, Eric S. and Toennisson, Tiffany Aurora and Doherty, Colleen J. and Perera, Imara Y.}, year={2021}, month={Oct} }
 @article{desai_lawas_valente_leman_grinevich_jagadish_doherty_2021, title={Warm nights disrupt transcriptome rhythms in field-grown rice panicles}, volume={118}, ISSN={["0027-8424"]}, url={https://doi.org/10.1073/pnas.2025899118}, DOI={10.1073/pnas.2025899118}, number={25}, journal={PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA}, publisher={Proceedings of the National Academy of Sciences}, author={Desai, Jigar S. and Lawas, Lovely Mae F. and Valente, Ashlee M. and Leman, Adam R. and Grinevich, Dmitry O. and Jagadish, S. V. Krishna and Doherty, Colleen J.}, year={2021}, month={Jun} }
 @article{vennapusa_somayanda_doherty_jagadish_2020, title={A universal method for high-quality RNA extraction from plant tissues rich in starch, proteins and fiber}, volume={10}, ISBN={2045-2322}, url={https://europepmc.org/articles/PMC7547072}, DOI={10.1038/s41598-020-73958-5}, number={1}, journal={SCIENTIFIC REPORTS}, author={Vennapusa, Amaranatha R. and Somayanda, Impa M. and Doherty, Colleen J. and Jagadish, S. V. Krishna}, year={2020} }
 @article{doherty_2020, title={Current status of the multinational Arabidopsis community}, volume={4}, url={http://dx.doi.org/10.1002/pld3.248}, DOI={10.1002/pld3.248}, number={7}, journal={Plant Direct}, publisher={Wiley}, author={doherty}, year={2020}, month={Jul} }
 @article{scarboro_ruzsa_doherty_kudenov_2020, title={Detection of Gray Mold Infection in Plants Using a Multispectral Imaging System}, volume={4}, url={https://doi.org/10.1101/2020.04.23.051300}, DOI={10.1101/2020.04.23.051300}, publisher={Cold Spring Harbor Laboratory}, author={Scarboro, Clifton G. and Ruzsa, Stephanie M. and Doherty, Colleen J. and Kudenov, Michael W.}, year={2020}, month={Apr} }
 @article{slabaugh_desai_sartor_lawas_krishna jagadish_doherty_2019, title={Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome}, volume={25}, ISBN={1469-9001}, url={https://doi.org/10.1261/rna.070227.118}, DOI={10.1261/rna.070227.118}, number={6}, journal={RNA}, publisher={Cold Spring Harbor Laboratory}, author={Slabaugh, Erin and Desai, Jigar S. and Sartor, Ryan C. and Lawas, Lovely Mae F. and Krishna Jagadish, S. V. and Doherty, Colleen J.}, year={2019}, month={Jun}, pages={669–684} }
 @article{doherty_friesner_gregory_loraine_megraw_meyers_provart_slotkin_town_assmann_et al._2019, title={Arabidopsis bioinformatics resources: The current state, challenges, and priorities for the future}, volume={3}, ISBN={2475-4455}, DOI={10.1002/pld3.109}, number={1}, journal={PLANT DIRECT}, author={Doherty, Colleen and Friesner, Joanna and Gregory, Brian and Loraine, Ann and Megraw, Molly and Meyers, Blake C. and Provart, Nicholas and Slotkin, R. Keith and Town, Chris and Assmann, Sarah M. and et al.}, year={2019}, month={Jan} }
 @article{argueso_assmann_birnbaum_chen_dinneny_doherty_eveland_friesner_greenlee_law_et al._2019, title={Directions for research and training in plant omics: Big Questions and Big Data}, volume={3}, ISSN={2475-4455}, url={http://dx.doi.org/10.1002/PLD3.133}, DOI={10.1002/pld3.133}, number={4}, journal={Plant Direct}, publisher={Wiley}, author={Argueso, Cristiana T. and Assmann, Sarah M. and Birnbaum, Kenneth D. and Chen, Sixue and Dinneny, José R. and Doherty, Colleen J. and Eveland, Andrea L. and Friesner, Joanna and Greenlee, Vanessa R. and Law, Julie A. and et al.}, year={2019}, month={Apr}, pages={e00133} }
 @article{moghimi_desai_bheemanahalli_impa_vennapusa_sebela_perumal_doherty_jagadish_2019, title={New candidate loci and marker genes on chromosome 7 for improved chilling tolerance in sorghum}, volume={4}, url={http://dx.doi.org/10.1093/jxb/erz143}, DOI={10.1093/jxb/erz143}, journal={J. Exp. Bot}, publisher={Oxford University Press (OUP)}, author={Moghimi, Naghmeh and Desai, Jigar S and Bheemanahalli, Raju and Impa, Somayanda M and Vennapusa, Amaranatha Reddy and Sebela, David and Perumal, Ramasamy and Doherty, Colleen J and Jagadish, S V Krishna}, year={2019}, month={Apr} }
 @article{grinevich_desai_stroup_duan_slabaugh_doherty_2019, title={Novel transcriptional responses to heat revealed by turning up the heat at night}, volume={101}, url={https://doi.org/10.1007/s11103-019-00873-3}, DOI={10.1007/s11103-019-00873-3}, number={1-2}, journal={Plant Molecular Biology}, publisher={Springer Science and Business Media LLC}, author={Grinevich, Dmitry O. and Desai, Jigar S. and Stroup, Kevin P. and Duan, Jiaqi and Slabaugh, Erin and Doherty, Colleen J.}, year={2019}, month={Sep}, pages={1–19} }
 @article{liebelt_jordan_doherty_2019, title={Only a matter of time: the impact of daily and seasonal rhythms on phytochemicals}, volume={18}, url={https://doi.org/10.1007/s11101-019-09617-z}, DOI={10.1007/s11101-019-09617-z}, number={6}, journal={Phytochemistry Reviews}, publisher={Springer Science and Business Media LLC}, author={Liebelt, Donna J. and Jordan, Juliette T. and Doherty, Colleen J.}, year={2019}, month={Dec}, pages={1409–1433} }
 @article{desai_lawas_valente_leman_grinevich_jagadish_doherty_2019, title={Warm nights disrupt global transcriptional rhythms in field-grown rice panicles}, volume={7}, url={https://doi.org/10.1101/702183}, DOI={10.1101/702183}, publisher={Cold Spring Harbor Laboratory}, author={Desai, Jigar S. and Lawas, Lovely Mae F. and Valente, Ashlee M. and Leman, Adam R. and Grinevich, Dmitry O. and Jagadish, S.V. Krishna and Doherty, Colleen J.}, year={2019}, month={Jul} }
 @article{desai_slabaugh_liebelt_fredenberg_gray_jagadish_wilkins_doherty_2018, title={Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance}, volume={9}, url={http://dx.doi.org/10.3389/fpls.2018.01585}, DOI={10.3389/fpls.2018.01585}, journal={Frontiers in Plant Science}, author={Desai, Jigar S. and Slabaugh, Erin and Liebelt, Donna J. and Fredenberg, Jacob D. and Gray, Benjamin N. and Jagadish, S. V. Krishna and Wilkins, Olivia and doherty}, year={2018}, month={Oct} }
 @article{desai_sartor_lawas_jagadish_doherty_2017, title={Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes}, url={https://doi.org/10.1038/s41598-017-17143-1}, DOI={10.1038/s41598-017-17143-1}, journal={Scientific Reports}, author={Desai, Jigar S. and Sartor, Ryan C. and Lawas, Lovely Mae and Jagadish, S. V. Krishna and Doherty, Colleen J.}, year={2017}, month={Dec} }
 @article{shani_salehin_zhang_sanchez_doherty_wang_mangado_song_tal_pisanty_et al._2017, title={Plant stress tolerance requires auxin-sensitive Aux/IAA transcriptional repressors}, volume={27}, DOI={10.1016/j.cub.2016.12.016}, number={3}, journal={Current Biology}, author={Shani, E. and Salehin, M. and Zhang, Y. Q. and Sanchez, S. E. and doherty and Wang, R. H. and Mangado, C. C. and Song, L. and Tal, I. and Pisanty, O. and et al.}, year={2017}, pages={437–444} }
 @article{friesner_assmann_bastow_bailey-serres_beynon_brendel_buell_bucksch_busch_demura_et al._2017, title={The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology}, volume={175}, url={http://dx.doi.org/10.1104/pp.17.01490}, DOI={10.1104/pp.17.01490}, number={4}, journal={Plant Physiol.}, author={Friesner, J. and Assmann, S. M. and Bastow, R. and Bailey-Serres, J. and Beynon, J. and Brendel, V. and Buell, C. R. and Bucksch, A. and Busch, W. and Demura, T. and et al.}, year={2017}, month={Dec}, pages={1499–1509} }
 @article{desai_sartor_lawas_jagadish_doherty_2016, title={Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes}, volume={12}, url={https://doi.org/10.1101/093807}, DOI={10.1101/093807}, publisher={Cold Spring Harbor Laboratory}, author={Desai, Jigar S. and Sartor, Ryan C. and Lawas, Lovely Mae and Jagadish, SV Krishna and Doherty, Colleen J.}, year={2016}, month={Dec} }
 @article{doherty_2015, title={Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.}, url={https://europepmc.org/articles/PMC4553765}, DOI={10.1073/pnas.1513609112}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={doherty}, year={2015}, month={Aug} }
 @article{doherty_2015, title={Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.}, url={https://doi.org/10.1111/tpj.12796}, DOI={10.1111/tpj.12796}, journal={The Plant journal : for cell and molecular biology}, author={doherty}, year={2015}, month={Mar} }
 @article{doherty_2014, title={A genome-scale resource for the functional characterization of Arabidopsis transcription factors.}, url={http://europepmc.org/articles/PMC4125603}, DOI={10.1016/j.celrep.2014.06.033}, journal={Cell reports}, author={doherty}, year={2014}, month={Jul} }
 @article{doherty_2012, title={Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor.}, url={http://europepmc.org/articles/PMC3286946}, DOI={10.1073/pnas.1200355109}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={doherty}, year={2012}, month={Feb} }
 @article{doherty_2012, title={CIRCADIAN CLOCK-ASSOCIATED 1 regulates ROS homeostasis and oxidative stress responses.}, url={https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/23027948/?tool=EBI}, DOI={10.1073/pnas.1209148109}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={doherty}, year={2012}, month={Oct} }
 @article{doherty_2012, title={Circadian surprise--it's not all about transcription.}, url={https://doi.org/10.1126/science.1230008}, DOI={10.1126/science.1230008}, journal={Science (New York, N.Y.)}, author={doherty}, year={2012}, month={Oct} }
 @article{doherty_2011, title={A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana.}, url={https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/21511909/?tool=EBI}, DOI={10.1093/jxb/err066}, journal={Journal of experimental botany}, author={doherty}, year={2011}, month={Apr} }
 @article{doherty_2010, title={Circadian control of global gene expression patterns.}, url={https://europepmc.org/articles/PMC4251774}, DOI={10.1146/annurev-genet-102209-163432}, journal={Annual review of genetics}, author={doherty}, year={2010}, month={Jan} }
 @article{doherty_2009, title={Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance.}, url={https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/19270186/?tool=EBI}, DOI={10.1105/tpc.108.063958}, journal={The Plant cell}, author={doherty}, year={2009}, month={Mar} }