Works (70)
Updated: September 12th, 2023 05:06
2023 article
Distilling Mechanistic Models From Multi-Omics Data
Erwin, S., Fletcher, J. R., Sweeney, D. C., Theriot, C. M., & Lanzas, C. (2023, September 6).
Source: ORCID
Added: September 7, 2023
2023 article
Early coronavirus disease 2019 (COVID-19) pandemic effects on individual-level risk for healthcare-associated infections in hospitalized patients
Farthing, T. S., Jolley, A., Nickel, K. B., Hill, C., Stwalley, D., Reske, K. A., … Lanzas, C. (2023, June 29). INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY, Vol. 6.
www.cambridge.org (publisher PDF)
Sources: Web Of Science, ORCID
Added: July 19, 2023
2023 journal article
Early evaluation of the Food and Drug Administration (FDA) guidance on antimicrobial use in food animals on antimicrobial resistance trends reported by the National Antimicrobial Resistance Monitoring System (2012-2019)
ONE HEALTH, 17.
author keywords: Antimicrobial resistance; FDA; Growth promotion; Guidance; NARMS
Sources: Web Of Science, ORCID
Added: September 5, 2023
2023 article
Impacts of the COVID-19 pandemic on antimicrobial use in companion animals in an academic veterinary hospital in North Carolina
Jolley, A., Love, W., Frey, E., & Lanzas, C. (2023, April 7). ZOONOSES AND PUBLIC HEALTH, Vol. 4.
author keywords: antimicrobial resistance; antimicrobial use; companion animals; COVID-19; pandemic
Sources: Web Of Science, ORCID
Added: May 1, 2023
2022 review
A review of epidemiological models of Clostridioides difficile transmission and control (2009e2021)
[Review of ]. ANAEROBE, 74.
author keywords: Clostridioides difficile; Transmission; Mathematical model; Bibliometric analysis
MeSH headings : Clostridioides; Clostridioides difficile; Clostridium Infections / prevention & control; Cross Infection / epidemiology; Epidemiological Models; Humans
Sources: ORCID, Web Of Science
Added: February 23, 2022
2022 article
Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli
Mahmud, B., Wallace, M. A., Reske, K. A., Alvarado, K., Muenks, C. E., Rasmussen, D. A., … Dantas, G. (2022, August 22). (C. W. Marshall, Ed.). MSYSTEMS, Vol. 8.
Ed(s): C. Marshall
author keywords: Escherichia coli; beta-lactamases; plasmid-mediated resistance
MeSH headings : Humans; Escherichia coli / genetics; Escherichia coli Infections / epidemiology; beta-Lactamases / genetics; Plasmids / genetics; Hospitals
Sources: ORCID, Web Of Science
Added: August 24, 2022
2022 journal article
Extensions of mean-field approximations for environmentally-transmitted pathogen networks
MATHEMATICAL BIOSCIENCES AND ENGINEERING, 20(2), 1637–1673.
author keywords: environmental transmission; moment closure approximations; mean-field models; network models; individual-based models; infectious disease
MeSH headings : Models, Biological; Environmental Microbiology; Communicable Diseases / transmission
Sources: Web Of Science, ORCID
Added: December 5, 2022
2022 journal article
Geographic disparities and determinants of COVID-19 incidence risk in the greater St. Louis Area, Missouri (United States)
PLOS ONE, 17(9).
MeSH headings : COVID-19 / epidemiology; COVID-19 Vaccines; Humans; Incidence; Missouri / epidemiology; Obesity; Socioeconomic Factors; United States
Sources: Web Of Science, ORCID
Added: April 4, 2023
2022 journal article
Geographic disparities and predictors of COVID-19 hospitalization risks in the St. Louis Area, Missouri (USA)
BMC PUBLIC HEALTH, 22(1).
author keywords: Severe Acute Respiratory Syndrome Coronavirus 2; SARS-CoV-2; Coronavirus Disease 2019; COVID-19; Disparities; Hospitalization Risks; Predictors; Negative Binomial Models; Geographically Weighted Regression Models; Epidemiology; Missouri
MeSH headings : COVID-19; Hospitalization; Humans; Missouri / epidemiology; Models, Statistical; SARS-CoV-2
Sources: Web Of Science, ORCID
Added: March 7, 2022
2022 journal article
Identifying patient-level risk factors associated with non-beta-lactam resistance outcomes in invasive MRSA infections in the United States using chain graphs
JAC-ANTIMICROBIAL RESISTANCE, 4(4).
Sources: Web Of Science, ORCID
Added: July 11, 2022
2021 journal article
Assessing the efficacy of interventions to control indoor SARS-Cov-2 transmission: An agent-based modeling approach
EPIDEMICS, 37.
author keywords: Aerosol; Agent-based model; COVID-19; Droplet; Indoor transmission; SARS-CoV-2
MeSH headings : COVID-19; Humans; SARS-CoV-2; Systems Analysis
Sources: Web Of Science, ORCID
Added: November 29, 2021
2021 article
Assessing the efficacy of interventions to control indoor SARS-Cov-2 transmission: an agent-based modeling approach
Farthing, T. S., & Lanzas, C. (2021, January 22). (Vol. 1). Vol. 1.
Source: ORCID
Added: January 23, 2021
2021 journal article
Combining epidemiological and ecological methods to quantify social effects on Escherichia coli transmission
ROYAL SOCIETY OPEN SCIENCE, 8(10).
author keywords: contact network; disease ecology; E; coli; network epidemiology; real-time location; social network
Sources: ORCID, Web Of Science
Added: October 6, 2021
2021 article
Identifying patient-level risk factors associated with non-β-lactam resistance outcomes in invasive methicillin-resistant Staphylococcus aureus infections in the United States using chain graphs
Love, W. J., Wang, C. A., & Lanzas, C. (2021, November 14). (Vol. 11). Vol. 11.
Source: ORCID
Added: November 15, 2021
2021 journal article
Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen
JOURNAL OF THE ROYAL SOCIETY INTERFACE, 18(179).
author keywords: environmental transmission; disease transmission modelling; phylodynamics; whole-genome sequencing
MeSH headings : Epidemics; Phylogeny; Probability
Sources: ORCID, Web Of Science
Added: June 9, 2021
2021 journal article
Mathematically modeling the effect of touch frequency on the environmental transmission of Clostridioides difficile in healthcare settings
MATHEMATICAL BIOSCIENCES, 340.
author keywords: Clostridioides difficile; Environmental transmission; Fomite; Ordinary differential equations; Stochastic simulation; Mathematical model
MeSH headings : Clostridioides difficile; Clostridium Infections / transmission; Cross Infection / transmission; Delivery of Health Care / statistics & numerical data; Environmental Microbiology; Humans; Models, Biological; Touch
Sources: Web Of Science, ORCID
Added: October 4, 2021
2021 article
Modelling the role of mortality-based response triggers on the effectiveness of African swine fever control strategies
Machado, G., Farthing, T. S., Andraud, M., Nunes Lopes, F. P., & Lanzas, C. (2021, October 15). TRANSBOUNDARY AND EMERGING DISEASES, Vol. 10.
Contriutors: G. Machado n , T. Farthing n , M. Andraud *, F. Lopes* & n
author keywords: network modelling; secure business continuity; surveillance; swine disease dynamics
MeSH headings : African Swine Fever / epidemiology; African Swine Fever / prevention & control; African Swine Fever Virus / physiology; Animals; Disease Outbreaks / veterinary; Epidemics / prevention & control; Epidemics / veterinary; Farms; Swine; Swine Diseases / epidemiology
Sources: ORCID, Web Of Science
Added: September 30, 2021
2021 article
When can we stop wearing masks? Agent-based modeling to identify when vaccine coverage makes nonpharmaceutical interventions for reducing SARS-CoV-2 infections redundant in indoor gatherings
Farthing, T. S., & Lanzas, C. (2021, April 27). (Vol. 4). Vol. 4.
Source: ORCID
Added: April 28, 2021
2020 journal article
Accounting for space and uncertainty in real‐time location system‐derived contact networks
Ecology and Evolution.
author keywords: animal behavior; biotelemetry; contact network; global positioning system; movement ecology; R package; radio telemetry; real-time location
Source: ORCID
Added: April 13, 2020
2020 journal article
Multi-scale dynamics of infectious diseases
Interface Focus, 10(1), 20190118.
author keywords: mechanistic modelling; ordinary differential equations; foot-and-mouth disease; Listeria; vector-borne disease; infectious disease dynamics
Source: ORCID
Added: December 14, 2019
2020 journal article
On modelling environmentally transmitted pathogens
Interface Focus, 10(1).
Contriutors: n , K. Davies n, S. Erwin n & D. Dawson n
author keywords: environmental transmission; mean-field models; individual-based models; infectious diseases
Source: ORCID
Added: December 14, 2019
2020 article
Shared Multidrug Resistance Patterns in Chicken-Associated Escherichia coli Identified by Association Rule Mining (vol 10, 687, 2019)
Cazer, C. L., Al-Mamun, M. A., Kaniyamattam, K., Love, W. J., Booth, J. G., Lanzas, C., & Grohn, Y. T. (2020, June 30). FRONTIERS IN MICROBIOLOGY, Vol. 11.
author keywords: association rule mining; antimicrobial resistance; Escherichia coli; machine learning; multidrug resistance; foodborne bacteria
Sources: Web Of Science, ORCID
Added: August 10, 2020
2019 journal article
Ecological and Socioeconomic Factors Associated with Bartonella henselae Exposure in Dogs Tested for Vector-Borne Diseases in North Carolina
Vector-Borne and Zoonotic Diseases, 19(8), 582–595.
author keywords: canine; seroreactivity; tick; flea; zoonoses; vector-borne
MeSH headings : Animals; Bartonella Infections / epidemiology; Bartonella Infections / microbiology; Bartonella Infections / veterinary; Bartonella henselae; Dog Diseases / epidemiology; Dog Diseases / microbiology; Dogs; Ecosystem; Female; Male; North Carolina / epidemiology; Retrospective Studies; Risk Factors; Seroepidemiologic Studies; Socioeconomic Factors; Tick-Borne Diseases / epidemiology
Sources: Web Of Science, ORCID, Crossref
Added: June 4, 2019
2019 journal article
Estimation of multidrug resistance variability in the National Antimicrobial Monitoring System
PREVENTIVE VETERINARY MEDICINE, 167, 137–145.
author keywords: Antimicrobial resistance; Multidrug resistance; Variability; Monitoring
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Chickens; Drug Resistance, Multiple, Bacterial; Escherichia coli / drug effects; Food Microbiology; Meat / microbiology; Microbial Sensitivity Tests; United States
Sources: Web Of Science, ORCID
Added: May 28, 2019
2019 journal article
Metapopulation Model from Pathogen's Perspective: A Versatile Framework to Quantify Pathogen Transfer and Circulation between Environment and Hosts
SCIENTIFIC REPORTS, 9.
MeSH headings : Algorithms; Cross Infection / prevention & control; Cross Infection / transmission; Disinfection; Host-Pathogen Interactions; Humans; Models, Biological; Population Dynamics
Sources: Web Of Science, ORCID
Added: February 25, 2019
2019 journal article
Shared Multidrug Resistance Patterns in Chicken-Associated Escherichia coli Identified by Association Rule Mining
FRONTIERS IN MICROBIOLOGY, 10.
author keywords: association rule mining; antimicrobial resistance; Escherichia coli; machine learning; multidrug resistance; foodborne bacteria
Sources: Web Of Science, ORCID
Added: April 29, 2019
2019 journal article
Transmission on empirical dynamic contact networks is influenced by data processing decisions
EPIDEMICS, 26, 32–42.
author keywords: Dynamic contact data; Data processing; Entropy; Contact networks; Transmission dynamics; Disease transmission model
MeSH headings : Animals; Cattle; Cattle Diseases / epidemiology; Cattle Diseases / transmission; Epidemics / statistics & numerical data; Epidemics / veterinary; Models, Statistical
Sources: Web Of Science, ORCID
Added: April 15, 2019
2018 journal article
Inferring the interaction structure of resistance to antimicrobials
PREVENTIVE VETERINARY MEDICINE, 152, 81–88.
author keywords: Interactions; Log-linear models; Bayesian statistics; Multidrug resistance
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bayes Theorem; Chickens; Drug Resistance, Bacterial; Escherichia coli / drug effects; Food Microbiology; Linear Models; Meat / microbiology; Turkeys
Sources: Web Of Science, ORCID
Added: August 6, 2018
2018 journal article
Investigating behavioral drivers of seasonal Shiga-Toxigenic Escherichia Coli (STEC) patterns in grazing cattle using an agent-based model
PLOS ONE, 13(10).
MeSH headings : Animals; Cattle; Cattle Diseases / microbiology; Cattle Diseases / transmission; Drinking Behavior / physiology; Escherichia coli Infections / microbiology; Escherichia coli Infections / transmission; Escherichia coli Infections / veterinary; Escherichia coli O157 / pathogenicity; Feces / microbiology; Herbivory / physiology; Seasons; Weather
Sources: Web Of Science, ORCID
Added: October 29, 2018
2018 journal article
Pathogen transfer through environment-host contact: an agent-based queueing theoretic framework
MATHEMATICAL MEDICINE AND BIOLOGY-A JOURNAL OF THE IMA, 35(3), 409–425.
author keywords: queueing theory; pathogen transfer and decay; environment-host contact; agent-based model; health care contact process; model framework
MeSH headings : Computer Simulation; Cross Infection / transmission; Disease Transmission, Infectious; Environmental Exposure; Host-Pathogen Interactions / physiology; Humans; Mathematical Concepts; Models, Biological; Nonlinear Dynamics; Stochastic Processes; Systems Theory
Sources: Web Of Science, ORCID
Added: December 10, 2018
2018 journal article
Phenotypical resistance correlation networks for 10 non-typhoidal Salmonella subpopulations in an active antimicrobial surveillance programme.
Epidemiology and Infection.
author keywords: Antibiotic resistance; epidemiology; statistics; veterinary epidemiology; veterinary pathogens
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Azithromycin / pharmacology; Ceftriaxone / pharmacology; Ciprofloxacin / pharmacology; Drug Resistance, Bacterial; Linear Models; Meat / microbiology; Phenotype; Salmonella Infections, Animal / drug therapy; Salmonella enterica / drug effects; Salmonella enterica / genetics; Selection, Genetic; United States
Source: ORCID
Added: September 9, 2019
2018 journal article
Shifts in the Gut Metabolome and Clostridium difficile Transcriptome throughout Colonization and Infection in a Mouse Model
MSPHERE, 3(2).
Contriutors: J. Fletcher n, S. Erwin n , n & C. Theriot n
author keywords: Clostridium difficile; amino acids; intestinal colonization; metabolomics; peptides; transcriptomics
MeSH headings : Amino Acids, Branched-Chain / metabolism; Animals; Anti-Bacterial Agents / administration & dosage; Carbohydrate Metabolism; Cecum / microbiology; Clostridioides difficile / metabolism; Clostridium Infections / metabolism; Clostridium Infections / microbiology; Female; Gastrointestinal Microbiome; Gene Expression Profiling; Male; Mass Spectrometry; Metabolome; Metabolomics; Mice; Mice, Inbred C57BL; Peptide Hydrolases / genetics; Proline / metabolism; Sequence Analysis, RNA; Transcriptome
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 review
A proposed analytic framework for determining the impact of an antimicrobial resistance intervention
[Review of ]. ANIMAL HEALTH RESEARCH REVIEWS, 18(1), 1–25.
author keywords: antimicrobial use; antimicrobial resistance; intervention strategy; analytic framework
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Bacteria / drug effects; Drug Resistance, Bacterial; Drug Utilization / legislation & jurisprudence; United States; United States Food and Drug Administration
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Antimicrobial Stewardship and Environmental Decontamination for the Control of Clostridium difficile Transmission in Healthcare Settings
BULLETIN OF MATHEMATICAL BIOLOGY, 79(1), 36–62.
author keywords: Clostridium difficile; Control; Agent-based model
MeSH headings : Anti-Bacterial Agents / adverse effects; Clostridioides difficile / pathogenicity; Computer Simulation; Cross Infection / prevention & control; Cross Infection / transmission; Decontamination / methods; Enterocolitis, Pseudomembranous / prevention & control; Enterocolitis, Pseudomembranous / transmission; Environmental Microbiology; Gastrointestinal Microbiome / drug effects; Humans; Mathematical Concepts; Models, Biological
Sources: ORCID, Web Of Science
Added: August 6, 2018
2017 journal article
Arresting Contagion: Science, Policy, and Conflicts Over Animal Disease Control. By Alan L. Olmstead and Paul W. Rhode. Cambridge (Massachusetts): Harvard University Press. $49.95. xi + 465 p.; ill.; index. ISBN: 978-0-674-72877-6. 2015.
The Quarterly Review of Biology, 92(4), 456–457.
Sources: Crossref, ORCID
Added: February 5, 2020
2017 journal article
Epigenetics, obesity and early-life cadmium or lead exposure
EPIGENOMICS, 9(1), 57–75.
author keywords: cadmium; DNA methylation; epigenetics; lead; obesity
MeSH headings : Animals; Cadmium Poisoning / epidemiology; Cadmium Poisoning / genetics; DNA Methylation; Epigenesis, Genetic; Gastrointestinal Microbiome / drug effects; Gastrointestinal Microbiome / genetics; Humans; Lead Poisoning / epidemiology; Lead Poisoning / genetics; Obesity / epidemiology; Obesity / genetics; Obesity / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 chapter
Mathematical Modeling of the Effects of Nutrient Competition and Bile Acid Metabolism by the Gut Microbiota on Colonization Resistance Against Clostridium difficile
In Association for Women in Mathematics Series (pp. 137–161).
Sources: Crossref, ORCID
Added: February 5, 2020
2017 journal article
Optimal control of vaccination rate in an epidemiological model of Clostridium difficile transmission
JOURNAL OF MATHEMATICAL BIOLOGY, 75(6-7), 1693–1713.
author keywords: Optimal control; Clostridium difficile; Vaccination; Ordinary differential equations; Healthcare setting
MeSH headings : Bacterial Vaccines / pharmacology; Clostridioides difficile; Computer Simulation; Cross Infection / epidemiology; Cross Infection / prevention & control; Cross Infection / transmission; Disease Susceptibility; Enterocolitis, Pseudomembranous / epidemiology; Enterocolitis, Pseudomembranous / prevention & control; Enterocolitis, Pseudomembranous / transmission; Epidemics / prevention & control; Epidemics / statistics & numerical data; Humans; Mathematical Concepts; Models, Biological; Time Factors; Vaccination / methods; Vaccination / statistics & numerical data
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
An Evaluation of Food as a Potential Source for Clostridium difficile Acquisition in Hospitalized Patients
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY, 37(12), 1401–1407.
MeSH headings : Academic Medical Centers; Adult; Aged; Aged, 80 and over; Clostridioides difficile / isolation & purification; Cross Infection / microbiology; Enterocolitis, Pseudomembranous; Feces / microbiology; Female; Food Microbiology; Hospitalization; Humans; Inpatients; Male; Middle Aged; Missouri; Prospective Studies; Young Adult
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Basic Reproduction Number and Transmission Dynamics of Common Serogroups of Enterohemorrhagic Escherichia coli
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(18), 5612–5620.
MeSH headings : Adhesins, Bacterial / genetics; Animals; Basic Reproduction Number; Cattle; Cross-Sectional Studies; Disease Transmission, Infectious; Enterohemorrhagic Escherichia coli / classification; Enterohemorrhagic Escherichia coli / isolation & purification; Environmental Exposure; Escherichia coli Infections / epidemiology; Escherichia coli Infections / microbiology; Escherichia coli Infections / transmission; Escherichia coli Infections / veterinary; Escherichia coli Proteins / genetics; O Antigens / analysis; Prevalence; Serogroup; Shiga Toxins / genetics; United States / epidemiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Distinction and connection between contact network, social network, and disease transmission network
PREVENTIVE VETERINARY MEDICINE, 131, 8–11.
Contriutors: S. Chen n & n
author keywords: Animal contact network; Social network; Disease transmission network; Distinction; Connection
MeSH headings : Animal Husbandry; Animals; Cattle; Cattle Diseases / transmission
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Markov Networks of Collateral Resistance: National Antimicrobial Resistance Monitoring System Surveillance Results from Escherichia coli Isolates, 2004-2012
PLOS COMPUTATIONAL BIOLOGY, 12(11).
Ed(s): M. Tanaka
MeSH headings : Anti-Bacterial Agents / therapeutic use; Bacterial Infections / epidemiology; Bacterial Infections / microbiology; Computer Simulation; Drug Resistance, Bacterial; Escherichia coli / drug effects; Escherichia coli / isolation & purification; Humans; Markov Chains; Models, Statistical; Population Surveillance / methods; Prevalence; Reproducibility of Results; Risk Assessment / methods; Sensitivity and Specificity; Treatment Outcome
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Mathematical modeling tools to study preharvest food safety
Microbiology Spectrum, 4(4).
Source: NC State University Libraries
Added: August 6, 2018
2016 journal article
Monitoring Antimicrobial Resistance in the Food Supply Chain and Its Implications for FDA Policy Initiatives
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 60(9), 5302–5311.
MeSH headings : Abattoirs / legislation & jurisprudence; Analysis of Variance; Animals; Anti-Bacterial Agents / pharmacology; Campylobacter coli / drug effects; Campylobacter coli / growth & development; Campylobacter jejuni / drug effects; Campylobacter jejuni / growth & development; Cattle; Ciprofloxacin / pharmacology; Drug Resistance, Multiple, Bacterial; Enrofloxacin; Escherichia coli / drug effects; Escherichia coli / growth & development; Fluoroquinolones / pharmacology; Food Handling / legislation & jurisprudence; Food Microbiology; Food Supply / legislation & jurisprudence; Humans; Meat / microbiology; Microbial Sensitivity Tests; Poultry / microbiology; Salmonella typhimurium / drug effects; Salmonella typhimurium / growth & development; Swine; United States; United States Food and Drug Administration / legislation & jurisprudence
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Complex system modelling for veterinary epidemiology
Preventive Veterinary Medicine, 118(2-3), 207–214.
Contriutors: * & S. Chen *
author keywords: Mathematical modelling; Veterinary epidemiology; Complex systems; Agent-based model; Network
MeSH headings : Animals; Biometry / methods; Communicable Diseases / epidemiology; Communicable Diseases / transmission; Communicable Diseases / veterinary; Contact Tracing / methods; Contact Tracing / veterinary; Disease Outbreaks / veterinary; Epidemiologic Methods / veterinary; Models, Biological; Models, Theoretical; Veterinary Medicine
Source: ORCID
Added: September 9, 2019
2015 journal article
Spatial-Temporal Dynamics of High-Resolution Animal Networks: What Can We Learn from Domestic Animals?
PLOS ONE, 10(6).
Contriutors: S. Chen n, A. Ilany *, B. White*, M. Sanderson* & n
MeSH headings : Algorithms; Animals; Animals, Domestic; Behavior, Animal; Cattle; Cluster Analysis; Communicable Diseases / transmission; Environment; Social Behavior; Spatio-Temporal Analysis
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via ℓ 1-minimization
BioData Mining.
Contriutors: C. Aguilar-Bonavides*, R. Sanchez-Arias * & *
author keywords: Peptide binding; Sparse representation; MHC class II; Epitope prediction; Immunoinformatics; Machine learning; Classification algorithms
Source: ORCID
Added: September 9, 2019
2014 journal article
Effectiveness of screening hospital admissions to detect asymptomatic carriers of Clostridium difficile: A modeling evaluation
Infection Control and Hospital Epidemiology, 35(8), 1043–1050.
Contriutors: * & E. Dubberke *
MeSH headings : Asymptomatic Infections / epidemiology; Clostridioides difficile; Clostridium Infections / diagnosis; Clostridium Infections / microbiology; Clostridium Infections / prevention & control; Cross Infection / epidemiology; Cross Infection / microbiology; Cross Infection / prevention & control; Female; Humans; Male; Middle Aged; Models, Theoretical; Patient Admission / statistics & numerical data; Prevalence
Source: ORCID
Added: September 9, 2019
2014 journal article
Highly dynamic animal contact network and implications on disease transmission
Scientific Reports, 4.
Contriutors: S. Chen *, B. White *, M. Sanderson*, D. Amrine *, A. Ilany * & *
MeSH headings : Animals; Communicable Diseases / genetics; Communicable Diseases / pathology; Communicable Diseases / transmission; Computer Simulation; Disease Outbreaks; Host-Parasite Interactions / genetics; Models, Biological; Models, Theoretical
Source: ORCID
Added: September 9, 2019
2013 journal article
Evaluating targets for control of plasmid-mediated antimicrobial resistance in enteric commensals of beef cattle: A modelling approach
Epidemiology and Infection, 141(11), 2294–2312.
Contriutors: V. Volkova *, Z. Lu*, * & Y. Grohn *
author keywords: Antimicrobial resistance; cattle; ceftiofur; cephalosporin; enteric commensal bacteria; Escherichia coli
MeSH headings : Animals; Anti-Bacterial Agents / pharmacology; Cattle; Computer Simulation; Drug Resistance, Bacterial; Escherichia coli / drug effects; Escherichia coli / genetics; Escherichia coli / physiology; Gene Expression Regulation, Bacterial; Intestines / microbiology; Male; Models, Biological; Plasmids / genetics
Source: ORCID
Added: September 9, 2019
2013 journal article
Evalution of the "Iceberg Phenomenon" in Johne's Disease through Mathematical Modelling
PLoS ONE, 8(10).
Contriutors: G. Magombedze *, C. Ngonghala * & *
MeSH headings : Animals; Cattle; Cattle Diseases / microbiology; Cattle Diseases / physiopathology; Models, Biological; Mycobacterium avium subsp. paratuberculosis; Paratuberculosis / microbiology; Paratuberculosis / physiopathology
Source: ORCID
Added: September 9, 2019
2013 journal article
Investigating effects of between- and within-host variability on Escherichia coli O157 shedding pattern and transmission
Preventive Veterinary Medicine, 109(1-2), 47–57.
Contriutors: S. Chen *, M. Sanderson * & *
author keywords: Escherichia coli 0157; Fecal shedding; Between- and within-host variability; Supershedder; Mathematical model
MeSH headings : Animals; Bacterial Shedding; Cattle; Cattle Diseases / epidemiology; Cattle Diseases / microbiology; Cattle Diseases / transmission; Escherichia coli Infections / epidemiology; Escherichia coli Infections / microbiology; Escherichia coli Infections / transmission; Escherichia coli Infections / veterinary; Escherichia coli O157 / physiology; Feces / microbiology; Humans; Models, Biological; Prevalence
Source: ORCID
Added: September 9, 2019
2013 journal article
Modelling dynamics of plasmid-gene mediated antimicrobial resistance in enteric bacteria using stochastic differential equations
Scientific Reports, 3.
Contriutors: V. Volkova *, Z. Lu*, * , H. Scott * & Y. Gröhn *
MeSH headings : Animals; Anti-Bacterial Agents / therapeutic use; Cattle; Computer Simulation; Drug Resistance, Bacterial / genetics; Enterobacteriaceae / drug effects; Enterobacteriaceae / genetics; Enterobacteriaceae Infections / epidemiology; Enterobacteriaceae Infections / genetics; Enterobacteriaceae Infections / veterinary; Models, Genetic; Models, Statistical; Plasmids / genetics; Prevalence
Source: ORCID
Added: September 9, 2019
2013 journal article
Temporal-spatial heterogeneity in animal-environment contact: Implications for the exposure and transmission of pathogens
Scientific Reports, 3.
Contriutors: S. Chen *, M. Sanderson, B. White *, D. Amrine & *
MeSH headings : Animals; Cattle; Communicable Diseases / epidemiology; Communicable Diseases / transmission; Computer Simulation; Environment; Environmental Exposure; Humans; Models, Theoretical; Prevalence; Sentinel Surveillance; Spatio-Temporal Analysis
Source: ORCID
Added: September 9, 2019
2012 journal article
Mathematical model of plasmid-mediated resistance to ceftiofur in commensal enteric escherichia coli of cattle
PLoS ONE, 7(5).
Contriutors: V. Volkova *, * , Z. Lu* & Y. Gröhn *
MeSH headings : Animals; Anti-Bacterial Agents / pharmacokinetics; Anti-Bacterial Agents / pharmacology; Cattle; Cephalosporins / pharmacokinetics; Cephalosporins / pharmacology; Escherichia coli / drug effects; Intestines / microbiology; Microbial Sensitivity Tests; Plasmids
Source: ORCID
Added: September 9, 2019
2011 journal article
Epidemiological model for Clostridium difficile transmission in healthcare settings
Infection Control and Hospital Epidemiology, 32(6), 553–561.
Contriutors: * , E. Dubberke *, Z. Lu*, K. Reske * & Y. Gröhn *
MeSH headings : Carrier State / epidemiology; Clostridioides difficile; Clostridium Infections / epidemiology; Clostridium Infections / transmission; Cross Infection / epidemiology; Cross Infection / transmission; Epidemiologic Methods; Hospitals; Humans; Models, Statistical; Retrospective Studies
Source: ORCID
Added: September 9, 2019
2011 journal article
Mathematical modeling of the transmission and control of foodborne pathogens and antimicrobial resistance at preharvest
Foodborne Pathogens and Disease, 8(1), 1–10.
Contriutors: * , Z. Lu* & Y. Gröhn *
MeSH headings : Agriculture; Animals; Disease Transmission, Infectious / statistics & numerical data; Disease Transmission, Infectious / veterinary; Drug Resistance, Microbial; Food Microbiology / statistics & numerical data; Foodborne Diseases / epidemiology; Foodborne Diseases / veterinary; Humans; Livestock / microbiology; Models, Biological; Models, Theoretical; Stochastic Processes; Zoonoses / epidemiology
Source: ORCID
Added: September 9, 2019
2011 journal article
The ecology and pathobiology of Clostridium difficile infections: An interdisciplinary challenge
Zoonoses and Public Health, 58(1), 4–20.
Contriutors: E. Dubberke *, D. Haslam *, * , L. Bobo*, C. Burnham *, Y. Gröhn *, P. Tarr *
author keywords: Clostridium difficile; infection; human; veterinary
MeSH headings : Animals; Clostridioides difficile / pathogenicity; Communicable Diseases, Emerging / epidemiology; Communicable Diseases, Emerging / prevention & control; Communicable Diseases, Emerging / transmission; Communicable Diseases, Emerging / veterinary; Enterocolitis, Pseudomembranous / epidemiology; Enterocolitis, Pseudomembranous / prevention & control; Enterocolitis, Pseudomembranous / transmission; Enterocolitis, Pseudomembranous / veterinary; Food Contamination; Food Microbiology; Humans; Incidence; Infection Control / methods; Risk Factors; Virulence; Zoonoses
Source: ORCID
Added: September 9, 2019
2010 journal article
Model or meal? Farm animal populations as models for infectious diseases of humans
Nature Reviews Microbiology, 8(2), 139–148.
Contriutors: * , P. Ayscue*, R. Ivanek * & Y. Gröhn *
MeSH headings : Animals; Animals, Domestic / microbiology; Animals, Domestic / virology; Communicable Diseases / microbiology; Communicable Diseases / transmission; Communicable Diseases / virology; Disease Models, Animal; Host-Pathogen Interactions; Humans; Models, Biological; Population
Source: ORCID
Added: September 9, 2019
2010 journal article
Transmission dynamics of a multidrug-resistant salmonella typhimurium outbreak in a dairy farm
Foodborne Pathogens and Disease, 7(4), 467–474.
Contriutors: * , L. Warnick*, K. James*, E. Wright *, M. Wiedmann * & Y. Gröhn *
MeSH headings : Animals; Anti-Infective Agents / pharmacology; Bacterial Shedding; Cattle; Cattle Diseases / epidemiology; Cattle Diseases / microbiology; Cattle Diseases / transmission; Computer Simulation; Dairying / methods; Disease Outbreaks / veterinary; Drug Resistance, Multiple, Bacterial; Electrophoresis, Gel, Pulsed-Field / veterinary; Feces / microbiology; Longitudinal Studies; Microbial Sensitivity Tests / veterinary; Models, Statistical; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / microbiology; Salmonella Infections, Animal / transmission; Salmonella typhimurium / classification; Salmonella typhimurium / drug effects; Salmonella typhimurium / isolation & purification; Salmonella typhimurium / pathogenicity; Serologic Tests / veterinary; Serotyping / veterinary; Time Factors
Source: ORCID
Added: September 9, 2019
2009 journal article
Development of a mechanistic model to represent the dynamics of particle flow out of the rumen and to predict rate of passage of forage particles in dairy cattle
Journal of Dairy Science, 92(8), 3981–4000.
Contriutors: S. Seo *, * , L. Tedeschi *, A. Pell * & D. Fox*
author keywords: rumen passage rate; ruminal particle dynamics; modeling
MeSH headings : Animal Feed / analysis; Animals; Cattle / metabolism; Computer Simulation; Dairying; Female; Models, Biological; Rumen / metabolism
Source: ORCID
Added: September 9, 2019
2009 journal article
Modeling on-farm Escherichia coli O157:H7 population dynamics
Foodborne Pathogens and Disease, 6(4), 461–470.
Contriutors: P. Ayscue*, * , R. Ivanek * & Y. Gröhn *
MeSH headings : Animal Husbandry / standards; Animals; Cattle; Cattle Diseases / prevention & control; Cattle Diseases / transmission; Colony Count, Microbial / methods; Colony Count, Microbial / veterinary; Disease Reservoirs / microbiology; Disease Reservoirs / veterinary; Environmental Microbiology; Escherichia coli Infections / prevention & control; Escherichia coli Infections / transmission; Escherichia coli Infections / veterinary; Escherichia coli O157 / growth & development; Escherichia coli O157 / isolation & purification; Humans; Kinetics; Mathematics; Models, Biological; Population Dynamics; Water Microbiology; Zoonoses
Source: ORCID
Added: September 9, 2019
2008 journal article
Improved feed protein fractionation schemes for formulating rations with the cornell net carbohydrate and protein system
Journal of Dairy Science, 91(12), 4881–4891.
author keywords: feed protein fractionation; protein supply; nutritional model
MeSH headings : Animal Feed; Dietary Carbohydrates / analysis; Dietary Proteins / analysis; Dietary Proteins / metabolism; Food Technology / methods; Food Technology / standards
Source: ORCID
Added: September 9, 2019
2008 journal article
The effect of heterogeneous infectious period and contagiousness on the dynamics of Salmonella transmission in dairy cattle
Epidemiology and Infection, 136(11), 1496–1510.
Contriutors: * , S. Brien*, R. Ivanek *, Y. Lo *, P. Chapagain *, K. Ray *, P. Ayscue*, L. Warnick*, Y. Gröhn *
MeSH headings : Animals; Basic Reproduction Number; Cattle; Cattle Diseases / epidemiology; Cattle Diseases / microbiology; Cattle Diseases / transmission; Computer Simulation; Infection Control / methods; Models, Statistical; Prevalence; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / transmission; Time Factors
Source: ORCID
Added: September 9, 2019
2008 journal article
The risk and control of Salmonella outbreaks in calf-raising operations: A mathematical modeling approach
Veterinary Research, 39(6).
Contriutors: * , L. Warnick*, R. Ivanek *, P. Ayscue*, D. Nydam * & Y. Gröhn *
MeSH headings : Animal Husbandry; Animals; Cattle; Disease Outbreaks / veterinary; Models, Biological; Prevalence; Risk Factors; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / prevention & control
Source: ORCID
Added: September 9, 2019
2007 journal article
A revised CNCPS feed carbohydrate fractionation scheme for formulating rations for ruminants
Animal Feed Science and Technology, 136(3-4), 167–190.
Contriutors: * , C. Sniffen, S. Seo *, L. Tedeschi * & D. Fox*
author keywords: carbohydrates; nutritional models; rumen; simulation
Source: ORCID
Added: September 9, 2019
2007 journal article
Development of a mechanistic model to represent the dynamics of liquid flow out of the rumen and to predict the rate of passage of liquid in dairy cattle
Journal of Dairy Science, 90(2), 840–855. http://www.scopus.com/inward/record.url?eid=2-s2.0-34247890082&partnerID=MN8TOARS
Source: ORCID
Added: September 9, 2019
2007 journal article
Digestion kinetics of dried cereal grains
Animal Feed Science and Technology, 136(3-4), 265–280.
author keywords: fermentation rates; cereal grains; gas production; feed variation; CNCPS
Source: ORCID
Added: September 9, 2019
2007 journal article
Evaluation of protein fractionation systems used in formulating rations for dairy cattle
Journal of Dairy Science, 90(1), 507–521. http://www.scopus.com/inward/record.url?eid=2-s2.0-35748969906&partnerID=MN8TOARS
Source: ORCID
Added: September 9, 2019
2006 journal article
Development and evaluation of empirical equations to predict feed passage rate in cattle
Animal Feed Science and Technology, 128(1-2), 67–83.
Contriutors: S. Seo *, L. Tedeschi *, * , C. Schwab* & D. Fox*
author keywords: passage rate; meta-analysis; empirical model; model comparison; CNCPS
Source: ORCID
Added: September 9, 2019
Employment
Updated: July 29th, 2015 16:26
2015 - present
North Carolina State University Raleigh, NC, US
Funding History
Funding history based on the linked ORCID record. Updated: November 12th, 2021 15:56
grant
September 1, 2020 - August 31, 2025
Automated Data Collection on Antimicrobial Use in Dogs and Cats in a Tertiary Hospital and Private Practices
United States Food and Drug Administration
grant
August 1, 2020 - July 31, 2025
Multi-scale modeling and phylodynamics for healthcare associated infections
National Center for Emerging and Zoonotic Infectious Diseases
grant
January 1, 2020 - December 31, 2024
Analytical pipelines for data and model integration: finding informed pathways for antimicrobial resistance control
National Institute of General Medical Sciences
grant
August 1, 2015 - July 31, 2019
Exposure heterogeneity & environmental transmission dynamics of Escherichia coli
National Institute of General Medical Sciences
grant
August 1, 2014 - April 30, 2018
Modeling and control of environmentally transmitted pathogens
National Institute of General Medical Sciences
grant
January 21, 2014 - December 31, 2015
Shiga-toxigenic Escherichia coli (STEC) in the Beef Chain: Assessing and Mitigating the Risk by Translational Science, Education and Outreach
United States Department of Agriculture
