2024 journal article
A first characterization of the microbiota-resilience link in swine
Microbiome, 12(1).
2024 journal article
Effect of germplasm exchange strategies on genetic gain, homozygosity, and genetic diversity in dairy stud populations: A simulation study
Journal of Dairy Science.
2024 journal article
Genetic parameters for novel climatic resilience indicators derived from automatically-recorded vaginal temperature in lactating sows under heat stress conditions
Genetics Selection Evolution, 56(1).
2024 journal article
Imputation accuracy from low- to medium-density SNP chips for US crossbred dairy cattle
Journal of Dairy Science, 107(1), 398–411.
2024 journal article
Inbreeding depression for producer-recorded udder, metabolic, and reproductive diseases in US dairy cattle
Journal of Dairy Science, 107(5), 3032–3046.
2024 article
Influence of early gestational heat stress on biomarkers of mammary gland development in replacement gilts genomically selected for thermotolerance or thermosensitivity
Musa, J., Byrd, M. K., Casey, T. M., Brito, L. F. F., Suarez-Trujillo, A., Schinckel, A. P., … Johnson, J. S. (2024, May 5). JOURNAL OF ANIMAL SCIENCE, Vol. 102, pp. 331–332.
2024 journal article
Investigation of cosmopolitan and local Italian beef cattle breeds uncover common patterns of heterozygosity
Animal, 3, 101142.
2024 article
Multiple-trait genomic prediction for swine meat quality traits using gut microbiome features as a correlated trait
Tiezzi, F., Schwab, C., Shull, C., & Maltecca, C. (2024, July 10). JOURNAL OF ANIMAL BREEDING AND GENETICS, Vol. 7.
2024 journal article
The potential of microbiota information to better predict efficiency traits in growing pigs fed a conventional and a high-fiber diet
Genetics Selection Evolution, 56(1).
2023 journal article
121 Quantifying Genetic Relationships to Maintain Genetic Diversity in the Canadian Dairy Population
Journal of Animal Science, 101(Supplement_3), 15–16.
2023 journal article
123 Benchmarking of Artificial Neural Network Models for Genomic Prediction of Quantitative Traits in Pigs
Journal of Animal Science, 101(Supplement_3), 17–18.
2023 journal article
3 A comparison of the equine fecal microbiome within different horse populations
Journal of Equine Veterinary Science, 124, 104305.
2023 journal article
381 Evaluating Indirect Measures of Milk Production in Heat-Stressed Lactating Sows Genomically Selected for Improved Thermotolerance
Journal of Animal Science, 101(Supplement_3), 311–312.
2023 content posted
A first characterization of the Microbiota-Resilience Link in Swine
2023 journal article
Dietary Prebiotic Oligosaccharides and Arachidonate Alter the Fecal Microbiota and Mucosal Lipid Composition of Suckling Pigs
JOURNAL OF NUTRITION, 153(8), 2249–2262.
2023 journal article
Domestication shapes the pig gut microbiome and immune traits from the scale of lineage to population
Journal of Evolutionary Biology, 36(12), 1695–1711.
2023 journal article
Evaluating phenotypes associated with heat tolerance and identifying moderate and severe heat stress thresholds in lactating sows housed in mechanically or naturally ventilated barns during the summer under commercial conditions
JOURNAL OF ANIMAL SCIENCE, 101.
2023 journal article
Genetic parameters for automatically-measured vaginal temperature, respiration efficiency, and other thermotolerance indicators measured on lactating sows under heat stress conditions
Genetics Selection Evolution, 55(1).
2023 journal article
Inbreeding becomes a serious issue
Interbull Bulletin, (59), 101–104.
2023 journal article
Invited review: Novel methods and perspectives for modulating the rumen microbiome through selective breeding as a means to improve complex traits: Implications for methane emissions in cattle
LIVESTOCK SCIENCE, 269.
2023 journal article
Longitudinal genomic analyses of automatically-recorded vaginal temperature in lactating sows under heat stress conditions based on random regression models
GENETICS SELECTION EVOLUTION, 55(1).
2023 journal article
MicroRNA and mRNA sequencing analyses reveal key hepatic metabolic and signaling pathways responsive to maternal undernutrition in full-term fetal pigs
JOURNAL OF NUTRITIONAL BIOCHEMISTRY, 116.
2023 journal article
SLEMM: million-scale genomic predictions with window-based SNP weighting
BIOINFORMATICS, 39(3).
Ed(s): R. Schwartz
2022 article proceedings
188. Patterns of inbreeding and selection using runs of homozygosity in North American dairy cattle
Presented at the World Congress on Genetics Applied to Livestock Production.
Event: World Congress on Genetics Applied to Livestock Production
2022 article proceedings
354. A variational Bayes method for genomic prediction increases accuracy and computing speed
Presented at the World Congress on Genetics Applied to Livestock Production.
Event: World Congress on Genetics Applied to Livestock Production
2022 journal article
400 Improving Heat Stress Resilience to Reduce the Negative Effects of pre- and Postnatal Heat Stress in Swine
Journal of Animal Science, 100(Supplement_3), 47–48.
2022 article proceedings
406. Compressing microbiota information using an autoencoder to predict growth traits in swine
Presented at the World Congress on Genetics Applied to Livestock Production.
Event: World Congress on Genetics Applied to Livestock Production
2022 article proceedings
506. Can microbial data improve prediction of breeding values of efficiency traits in pigs fed conventional or fiber diets?
Presented at the World Congress on Genetics Applied to Livestock Production.
Event: World Congress on Genetics Applied to Livestock Production
2022 article
A network modeling approach provides insights into the environment-specific yield architecture of wheat
DeWitt, N., Guedira, M., Murphy, J. P., Marshall, D., Mergoum, M., Maltecca, C., & Brown-Guedira, G. (2022, May 10). (T. Juenger, Ed.). GENETICS, Vol. 5.
Contributors: N. Dewitt n, M. Guedira n, J. Murphy n, D. Marshall*, M. Mergoum *, n , G. Brown-Guedira n
Ed(s): T. Juenger
2022 conference paper
Comparing methods to summarize gut microbiota composition in estimating microbiability of host phenotypes in swine
In R. F. Veerkamp & Y. de Haas (Eds.), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and Species Orientated Innovations in Animal Breeding, and Contribution of Genetics to Solving Societal Challenges (pp. 2081–2084).
Ed(s): R. Veerkamp & Y. de Haas
2022 journal article
Current state of inbreeding, genetic diversity, and selection history in all major breeds of US dairy cattle
Journal of Dairy Science, 105(Supplement 1), 188–188.
2022 conference paper
Effect of Temperature and Maternal Age on Recombination Rate in Cattle
Proceedings of the Plant and Animal Genome XXIX Conference. Presented at the Plant and Animal Genome XXIX Conference, San Diego, CA.
Event: Plant and Animal Genome XXIX Conference at San Diego, CA on January 8-12, 2022
2022 journal article
Exploring methods to summarize gut microbiota composition for microbiability estimation and phenotypic prediction in swine
JOURNAL OF ANIMAL SCIENCE, 100(9).
Contributors: Y. He n, F. Tiezzi n, J. Jiang n , J. Howard, Y. Huang, K. Gray*, J. Choi *, n
2022 journal article
Exploring the role of gut microbiota in host feeding behavior among breeds in swine
BMC MICROBIOLOGY, 22(1).
Contributors: Y. He n, F. Tiezzi n, J. Howard*, Y. Huang, K. Gray* & n
2022 journal article
Genomic characterization of autozygosity and recent inbreeding trends in all major breeds of US dairy cattle
JOURNAL OF DAIRY SCIENCE, 105(11), 8956–8971.
Contributors: E. Lozada-Soto n, F. Tiezzi *, J. Jiang n , J. Cole *, P. VanRaden * & n
2022 chapter book
Genotype by Environment Interactions in Livestock Farming
2022 journal article
Genotyping and phenotyping strategies for genetic improvement of meat quality and carcass composition in swine
GENETICS SELECTION EVOLUTION, 54(1).
Contributors: E. Lozada-Soto n, D. Lourenco *, n , J. Fix*, C. Schwab*, C. Shull, F. Tiezzi *
2022 conference paper
Gut Microbiota Associated with Host Feeding Behavior and Microbial Prediction of Growth and Carcass Traits in Swine
Proceedings of the Plant and Animal Genome XXIX Conference. Presented at the Plant and Animal Genome XXIX Conference, San Diego, CA.
Event: Plant and Animal Genome XXIX Conference at San Diego, CA on January 8-12, 2022
2022 journal article
Gut microbiota and host genetics contribute to the phenotypic variation of digestive and feed efficiency traits in growing pigs fed a conventional and a high fiber diet
GENETICS SELECTION EVOLUTION, 54(1).
Contributors: V. Déru *, F. Tiezzi n, C. Carillier-Jacquin *, B. Blanchet, L. Cauquil *, O. Zemb *, A. Bouquet *, n , H. Gilbert *
2022 journal article
Mixed-model GWAS on milk production traits of 1.16 M genotyped Holstein cattle
Journal of Dairy Science, 105(Supplement 1), 19–19.
2022 journal article
SLEMM: Million-scale genomic best linear unbiased predictions with window-based SNP weighting
Journal of Dairy Science, 105(Supplement 1), 19–19.
2022 article
The Addition of Epistatic Genetic Effects Increases Genomic Prediction Accuracy for Reproduction and Production Traits in Duroc Pigs Using Genomic Models
ResearchSquare.
2022 journal article
Use of Host Feeding Behavior and Gut Microbiome Data in Estimating Variance Components and Predicting Growth and Body Composition Traits in Swine
GENES, 13(5).
Contributors: Y. He n, F. Tiezzi n, J. Jiang n , J. Howard, Y. Huang, K. Gray*, J. Choi, n
2021 journal article
25 Gut Microbiome Information Enables Additional Discovery in Genome-wide Association Studies in Swine
Journal of Animal Science, 99(Supplement_3), 10–10.
2021 journal article
29 Effects of Recent and Ancient Inbreeding on Growth in American Angus Cattle
Journal of Animal Science, 99(Supplement_3), 14–14.
2021 journal article
53 Awardee Talk: Implications of the Gut Microbiome for Genetic Improvement of Swine
Journal of Animal Science, 99(Supplement_3), 29–29.
2021 journal article
Effect of Temperature and Maternal Age on Recombination Rate in Cattle
FRONTIERS IN GENETICS, 12.
2021 journal article
Genetic Parameters for Tolerance to Heat Stress in Crossbred Swine Carcass Traits
FRONTIERS IN GENETICS, 11.
Contributors: M. Usala*, N. Macciotta *, M. Bergamaschi n, n , J. Fix*, C. Schwab*, C. Shull, F. Tiezzi n
2021 journal article
Genetic diversity and population history of eight Italian beef cattle breeds using measures of autozygosity
PLOS ONE, 16(10).
Contributors: M. Fabbri *, C. Dadousis *, F. Tiezzi n, n , E. Lozada-Soto n, S. Biffani *, R. Bozzi *
2021 journal article
Gut microbiome mediates host genomic effects on phenotypes: a case study with fat deposition in pigs
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 530–544.
Contributors: F. Tiezzi n, J. Fix*, C. Schwab*, C. Shull & n
2021 journal article
Identification of unique ROH regions with unfavorable effects on production and fertility traits in Canadian Holsteins
GENETICS SELECTION EVOLUTION, 53(1).
Contributors: B. Makanjuola *, * , F. Miglior *, G. Marras, E. Abdalla *, F. Schenkel *, C. Baes *
2021 journal article
MicroRNA and mRNA Sequencing Analyses Reveal Key Hepatic Metabolic Pathways Responsive to Maternal Malnutrition in Full-Term Fetal Pigs
Current Developments in Nutrition, 5(Supplement_2), 829.
2021 journal article
Microbial composition differs between production systems and is associated with growth performance and carcass quality in pigs
ANIMAL MICROBIOME, 3(1).
Contributors: F. Tiezzi *
2021 conference paper
Microbiome and genetic contribution to the phenotypic variation of digestive efficiency in pig. 72
Annual Meeting of the European Federation of Animal Science (EAAP), 27, 571. Wageningen Academic Publishers.
Event: Annual Meeting of the European Federation of Animal Science at Davos, Switzerland
2021 journal article
PSXII-12 Partitioning direct and maternal genetic effects into additive and non-additive components for growth and maternal traits in Yorkshire pigs
Journal of Animal Science, 99(Supplement_3), 251–252.
2021 review
Potential Use of Gut Microbiota Composition as a Biomarker of Heat Stress in Monogastric Species: A Review
[Review of ]. ANIMALS, 11(6).
Contributors: Y. He n, n & F. Tiezzi n
2021 journal article
Predicting body weight in growing pigs from feeding behavior data using machine learning algorithms
COMPUTERS AND ELECTRONICS IN AGRICULTURE, 184.
Contributors: Y. He n, F. Tiezzi n, J. Howard* & n
2021 journal article
Trends in genetic diversity and the effect of inbreeding in American Angus cattle under genomic selection
GENETICS SELECTION EVOLUTION, 53(1).
Contributors: E. Lozada-Soto n, * , D. Lu, S. Miller*, J. Cole & F. Tiezzi
2021 conference paper
Unpacking the Yield Effects of Major Heading Date Alleles in Wheat through Joint Analysis of Historic Breeding Panels and Their Climates
ASA, CSSA, SSSA International Annual Meeting. Presented at the ASA, CSSA, SSSA International Annual Meeting, Salt Lake City, UT.
Event: ASA, CSSA, SSSA International Annual Meeting at Salt Lake City, UT on November 7-10, 2021
2020 journal article
16 Opportunities and challenges from deep-phenotyping of dairy cattle
Journal of Animal Science, 98(Supplement_4), 5–6.
2020 journal article
249 Predicting body weight of finishing pigs using machine and deep learning algorithms
Journal of Animal Science, 98(Supplement_4), 176–176.
2020 journal article
30 Inbreeding in American Angus cattle before and after the implementation of genomic selection
Journal of Animal Science, 98(Supplement_4), 14–14.
2020 journal article
43 Feed efficiency and behavior are associated with gut microbiome in three breeds of pigs
Journal of Animal Science, 98(Supplement_4), 24–24.
2020 journal article
Analysis of milk leukocyte differential measures for use in management practices for decreased mastitis incidence
Journal of Dairy Science, 103(1), 572–582.
Contributors: E. Lozada-Soto n, n , K. Anderson n & F. Tiezzi n
2020 journal article
Effect of genomic selection on rate of inbreeding and coancestry and effective population size of Holstein and Jersey cattle populations
Journal of Dairy Science, 103(6), 5183–5199.
Contributors: B. Makanjuola *, F. Miglior *, E. Abdalla *, n , F. Schenkel * & C. Baes *
2020 journal article
Effect of recent and ancient inbreeding on production and fertility traits in Canadian Holsteins
BMC GENOMICS, 21(1).
Contributors: B. Makanjuola *, * , F. Miglior *, F. Schenkel * & C. Baes *
2020 journal article
Evidence for recombination variability in purebred swine populations
Journal of Animal Breeding and Genetics, 138(2), 259–273.
Contributors: E. Lozada-Soto n, n , H. Wackel n, W. Flowers n, K. Gray, Y. He n, Y. Huang, J. Jiang n , F. Tiezzi n
2020 journal article
GWAS and fine-mapping of livability and six disease traits in Holstein cattle
BMC GENOMICS, 21(1).
Contributors: E. Freebern*, D. Santos *, L. Fang *, J. Jiang* , K. Parker Gaddis *, G. Liu *, P. Vanraden *, n , J. Cole *, L. Ma *
2020 journal article
Genomics of Heat Tolerance in Reproductive Performance Investigated in Four Independent Maternal Lines of Pigs
FRONTIERS IN GENETICS, 11.
Contributors: F. Tiezzi n, L. Brito *, J. Howard*, Y. Huang, K. Gray*, C. Schwab, J. Fix, n
2020 report
Gut microbiome and feed efficiency of pigs
[Research Square Preprint].
2020 journal article
Gut microbiome composition differences among breeds impact feed efficiency in swine
Microbiome, 8(1).
Contributors: M. Bergamaschi n, F. Tiezzi n, J. Howard, Y. Huang, K. Gray, C. Schillebeeckx, N. McNulty, n
2020 journal article
Heritability and genome-wide association of swine gut microbiome features with growth and fatness parameters
SCIENTIFIC REPORTS, 10(1).
Contributors: M. Bergamaschi n, n , C. Schillebeeckx, N. McNulty, C. Schwab, C. Shull, J. Fix*, F. Tiezzi n
2020 journal article
Inbreeding depression due to different age classes of inbreeding on production and fertility traits in Canadian Holsteins
Journal of Dairy Science, 103(Supplement 1), 115–115.
2020 journal article
Integration of Wet-Lab Measures, Milk Infrared Spectra, and Genomics to Improve Difficult-to-Measure Traits in Dairy Cattle Populations
FRONTIERS IN GENETICS, 11.
Contributors: A. Cecchinato *, H. Toledo-Alvarado *, S. Pegolo *, A. Rossoni, E. Santus, n , G. Bittante *, F. Tiezzi n
2020 journal article
Leveraging Multiple Layers of Data To Predict Drosophila Complex Traits
G3-GENES GENOMES GENETICS, 10(12), 4599–4613.
Contributors: F. Morgante n, W. Huang n, P. Sørensen *, n & T. Mackay n
2020 journal article
Microbiability of meat quality and carcass composition traits in swine
Journal of Animal Breeding and Genetics, 138(2), 223–236.
Contributors: P. Khanal n, n , C. Schwab, J. Fix & F. Tiezzi n
2020 article
Microbiome composition differences among breeds impact feed efficiency in swine
ResearchSquare.
2020 journal article
Modeling host-microbiome interactions for the prediction of meat quality and carcass composition traits in swine
GENETICS SELECTION EVOLUTION, 52(1).
Contributors: P. Khanal n, n , C. Schwab, J. Fix*, M. Bergamaschi n & F. Tiezzi n
2020 journal article
Symposium review: Exploiting homozygosity in the era of genomics—Selection, inbreeding, and mating programs
Journal of Dairy Science, 103(6), 5302–5313.
Contributors: , F. Tiezzi n, J. Cole * & C. Baes * n
2020 journal article
The future of phenomics in dairy cattle breeding
ANIMAL FRONTIERS, 10(2), 37–44.
Contributors: J. Cole *, S. Eaglen, n , H. Mulder * & J. Pryce *
2020 journal article
Transcriptome analysis identifies genes and co-expression networks underlying heat tolerance in pigs
BMC GENETICS, 21(1).
Contributors: Y. He n, n , F. Tiezzi n, E. Soto n & W. Flowers n
2019 journal article
212 Genomic prediction of carcass average daily gain, fat and loin depth in three-way crossbred pigs including information collected on purebreds
Journal of Animal Science, 97(Supplement_3), 40–40.
2019 journal article
213 Genomic selection of carcass quality traits in crossbred pigs using a reference population
Journal of Animal Science, 97(Supplement_3), 41–41.
2019 journal article
214 Correlation among host gut microbiome and their relationship with meat quality and carcass composition traits of swine
Journal of Animal Science, 97(Supplement_3), 44–44.
2019 journal article
216 Contribution of host gut microbiome in prediction of meat quality and carcass composition traits in swine
Journal of Animal Science, 97(Supplement_3), 44–45.
2019 journal article
292 Differential gene expression analysis for piglets supplied dietary prebiotics and arachidonic acid for gastrointestinal disturbances
Journal of Animal Science, 97(Supplement_3), 122–123.
2019 journal article
381 Investigation of heat stress on differential gene expression in tolerant and susceptible pigs
Journal of Animal Science, 97(Supplement_3), 144–144.
2019 conference paper
Cattle/Swine
Plant and Animal Genome XXVII Conference. Presented at the Plant and Animal Genome XXVII Conference, San Diego, CA.
Event: Plant and Animal Genome XXVII Conference at San Diego, CA on January 12-16, 2019
2019 journal article
Effect of genomic selection on rate of inbreeding and effective population size in North American Holstein and Jersey dairy cattle populations
Journal of Dairy Science, 102(Supplement 1), 291–291.
Event: 2019 American Dairy Science Association Annual Meeting at Cincinnati, Ohio on June 23-26, 2019
2019 journal article
Exploiting homozygosity in the era of genomics-Runs of homozygosity, inbreeding, and genomic mating programs
Journal of Dairy Science, 102(Supplement 1), 98–99.
Event: 2019 American Dairy Science Association Annual Meeting at Cincinnati, Ohio on June 23-26, 2019
2019 article
GWAS and fine-mapping of livability and six disease traits in holstein cattle
BioRxiv.
Contributors: E. Freebern*, D. Santos*, L. Fang *, J. Jiang *, K. Parker Gaddis, G. Liu *, P. Vanraden *, n , J. Cole *, L. Ma *
2019 journal article
Genetic parameters of meat quality, carcass composition, and growth traits in commercial swine
JOURNAL OF ANIMAL SCIENCE, 97(9), 3669–3683.
Contributors: P. Khanal n, n , C. Schwab, K. Gray* & F. Tiezzi n
2019 journal article
Genome-wide association study for carcass quality traits and growth in purebred and crossbred pigs
JOURNAL OF ANIMAL SCIENCE, 98(1).
Contributors: M. Bergamaschi*, n , J. Fix*, C. Schwab & F. Tiezzi n
2019 journal article
Investigation of genetic variation in global DNA methylation in bull semen and its relationship with semen quality and fertility parameters
Journal of Diary Science, 102(Supplement 1), 293–293.
Event: 2019 American Dairy Science Association Annual Meeting at Cincinnati, Ohio on June 23-26, 2019
2019 article
Leveraging multiple layers of data to predict Drosophila complex traits
BioRxiv.
Contributors: F. Morgante n, W. Huang n, P. Sørensen *, n & T. Mackay n
2019 conference paper
Managing Homozygosity and Diversity in Livestock
Plant and Animal Genome XXVII Conference. Presented at the Plant and Animal Genome XXVII Conference, San Diego, CA.
Event: Plant and Animal Genome XXVII Conference at San Diego, CA on January 12-16, 2019
2019 article
Microbiability of meat quality and carcass composition traits in swine
BioRxiv.
Contributors: P. Khanal n, n , C. Schwab, J. Fix & F. Tiezzi n
2019 journal article
Predicting Growth and Carcass Traits in Swine Using Microbiome Data and Machine Learning Algorithms
Scientific Reports, 9(1).
Contributors: , D. Lu n, C. Schillebeeckx, N. McNulty, C. Schwab, C. Shull, F. Tiezzi n n
2019 conference paper
Swine
Plant and Animal Genome XXVII Conference. Presented at the Plant and Animal Genome XXVII Conference, San Diego, CA.
Event: Plant and Animal Genome XXVII Conference at San Diego, CA on January 12-16, 2019
2019 journal article
Symposium review: The genomic architecture of inbreeding: How homozygosity affects health and performance
JOURNAL OF DAIRY SCIENCE, 102(3), 2807–2817.
Contributors: C. Baes *, B. Makanjuola *, F. Miglior *, G. Marras *, J. Howard n, A. Fleming *, n
2019 conference paper
The Microbiability of Meat Quality Traits in Swine
Plant and Animal Genome XXVII Conference. Presented at the Plant and Animal Genome XXVII Conference, San Diego, CA.
Event: Plant and Animal Genome XXVII Conference at San Diego, CA on January 12-16, 2019
2019 journal article
The interaction between microbiome and pig efficiency: A review
Journal of Animal Breeding and Genetics, 137(1), 4–13.
Contributors: , M. Bergamaschi n & F. Tiezzi n n
2019 article
The use of genomic information to improve selection response while controlling inbreeding in dairy cattle breeding programs
ADVANCES IN BREEDING OF DAIRY CATTLE, Vol. 72, pp. 71–96.
2018 journal article
136 Evidence of Genetic Variation for Recombination Events in Purebred Swine Populations.
Journal of Animal Science, 96(suppl_2), 72–73.
2018 journal article
298 Gut Microbiome Provides A New Source of Variation to Improve Growth Efficiency in Crossbred Pigs.
Journal of Animal Science, 96(suppl_3), 112–113.
2018 journal article
305 Genetic parameters of meat quality and carcass composition traits in crossbred swine.
Journal of Animal Science, 96(suppl_3), 116–116.
2018 journal article
309 Beyond predictions: managing inbreeding and variability in the genomic era.
Journal of Animal Science, 96(suppl_3), 117–118.
2018 journal article
Effect of genetic architecture on the prediction accuracy of quantitative traits in samples of unrelated individuals
HEREDITY, 120(6), 500–514.
Contributors: F. Morgante n, W. Huang n, n & T. Mackay n
2018 journal article
Genetic Parameter Estimates for Metabolizing Two Common Pharmaceuticals in Swine
Frontiers in Genetics, 9(FEB).
Contributors: J. Howard n, M. Ashwell n, R. Baynes n , J. Brooks n, J. Yeatts n & n
2018 conference paper
Genome-wide association study and gene network analysis of fertility, retained placenta, and metritis in US Holstein cattle
Proceedings of the World Congress on Genetics Applied to Livestock Production, 1, 171.
Event: World Congress on Genetics Applied to Livestock Production at Auckland, New Zealand on February 11-16, 2018
2018 conference paper
Genomic inbreeding estimation from whole genome sequence compared to medium density genomic data estimates
Proceedings of the World Congress on Genetics Applied to Livestock Production, 11, 603.
Event: World Congress on Genetics Applied to Livestock Production at Auckland, New Zealand on February 11-19, 2018
2018 conference paper
Host Variability and the Longitudinal Diversity of Microbiota Composition in Swine
Plant and Animal Genome XXVI Conference. Presented at the Plant and Animal Genome XXVI Conference, San Diego, CA.
Event: Plant and Animal Genome XXVI Conference at San Diego, CA on January 13-17, 2018
2018 journal article
Host contributes to longitudinal diversity of fecal microbiota in swine selected for lean growth
MICROBIOME, 6(1).
Contributors: D. Lu n, F. Tiezzi n, C. Schillebeeckx, N. McNulty, C. Schwab, C. Shull, n
2018 journal article
Identification of unfavourable homozygous haplotypes associated with with milk and fertility traits in Holsteins
Proceedings of the World Congress Genetics Applied Livestock Production, 11, 767.
Event: World Congress Genetics Applied Livestock Production at Auckland, New Zealand on February 7-11, 2018
2018 journal article
Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle
BMC GENETICS, 19(1).
Contributors: F. Tiezzi n, M. Arceo n, J. Cole * & n
2018 review
Invited review: Reproductive and genomic technologies to optimize breeding strategies for genetic progress in dairy cattle
[Review of ]. ARCHIVES ANIMAL BREEDING, 61(1), 43–57.
2018 conference paper
Metagenomic predictions of growth and carcass traits in pigs with the use of bayesian alphabet and machine learning methods
Proceedings of the World Congress of Genetics Applied to Livestock Production. Presented at the World Congress of Genetics Applied to Livestock Production, Auckland, New Zealand.
Event: World Congress of Genetics Applied to Livestock Production at Auckland, New Zealand on February 11-16, 2018
2018 conference paper
Microbiome Contribute Significantly to Variation in Fat and Growth Traits in Crossbred Pigs?
Proceedings of the World Congress on Genetics Applied to Livestock Production, 2, 614.
Event: World Congress on Genetics Applied to Livestock Production at Auckland, New Zealand on February 11-16, 2018
2018 conference paper
On the value of genotyping terminal crossbred pigs for nucleus genomic selection for carcass traits
Proceedings of the World Congress Genetics Applied to Livestock Production. Presented at the World Congress Genetics Applied to Livestock Production, Auckland, New Zealand.
Event: World Congress Genetics Applied to Livestock Production at Auckland, New Zealand on February 11-16, 2018
2018 article
Predicting growth and carcass traits in swine using metagenomic data and machine learning algorithms
BioRxiv.
Contributors: , D. Lu n, C. Schillebeeckx, N. McNulty, C. Schwab, C. Schull, F. Tiezzi n n
2018 conference paper
Swine
Plant and Animal Genome XXVI Conference. Presented at the Plant and Animal Genome XXVI Conference, San Diego, CA.
Event: Plant and Animal Genome XXVI Conference at San Diego, CA on January 13-17, 2018
2017 chapter
A Review of Linear Mixed Models
In Genetic Data Analysis for Plant and Animal Breeding (pp. 49–86).
2017 journal article
A comparison of accuracy validation methods for genomic and pedigree-based predictions of swine litter size traits using Large White and simulated data
JOURNAL OF ANIMAL BREEDING AND GENETICS, 135(1), 5–13.
Contributors: A. Putz n, F. Tiezzi n, n , K. Gray & M. Knauer n
2017 article
A heuristic method to identify runs of homozygosity associated with reduced performance in livestock
BioRxiv.
Contributors: J. Howard n, F. Tiezzi n, Y. Huang, K. Gray & n
2017 journal article
A heuristic method to identify runs of homozygosity associated with reduced performance in livestock
Journal of Animal Science, 95(10), 4318–4332.
Contributors: J. Howard n, F. Tiezzi n, Y. Huang, K. Gray & n
2017 journal article
BREEDING AND GENETICS SYMPOSIUM: Resilience of livestock to changing environments
JOURNAL OF ANIMAL SCIENCE, 95(4), 1777–1779.
2017 chapter
Breeding Values
In Genetic Data Analysis for Plant and Animal Breeding (pp. 107–140).
2017 journal article
Breeding and genetics symposium: Resilience of livestock to changing environments
Journal of Animal Science, 95(4), 1777–1779.
2017 conference paper
Design of breeding strategies for feed efficiency and methane emissions in Holstein using ZPLAN+
Book of Abstracts of the 68th Annual Meeting of the European Federation of Animal Science, 183–183.
2017 journal article
Dietary prebiotics and arachidonic acid alter intestinal phospholipid composition and time-dependently change fecal microbiome in formula-fed piglets
FASEB Journal, 31.
2017 chapter
Exploratory Marker Data Analysis
In Genetic Data Analysis for Plant and Animal Breeding (pp. 263–285).
2017 journal article
Gene co-expression network analysis identifies porcine genes associated with variation in metabolizing fenbendazole and flunixin meglumine in the liver
Scientific Reports, 7(1).
Contributors: J. Howard n, M. Ashwell n, R. Baynes n , J. Brooks n, J. Yeatts n & n
2017 book
Genetic Data Analysis for Plant and Animal Breeding
2017 conference paper
Genetics and genomics of swine lean growth at the interface between host and commensal gut bacteria
Proceedings of the 22nd Association for the Advancement of Animal Breeding and Genetics Conference, 221–228.
Event: Association for the Advancement of Animal Breeding and Genetics Conference at Townsville, Queensland, Australia on July 2-5, 2017
2017 journal article
Geno-Diver: A combined coalescence and forward-in-time simulator for populations undergoing selection for complex traits
JOURNAL OF ANIMAL BREEDING AND GENETICS, 134(6), 553–563.
Contributors: J. Howard n, F. Tiezzi n, J. Pryce * & n
2017 chapter book
Genomic Relationships and GBLUP
2017 journal article
Genotype by environment (climate) interaction improves genomic prediction for production traits in US Holstein cattle
JOURNAL OF DAIRY SCIENCE, 100(3), 2042–2056.
Contributors: F. Tiezzi n, G. Campos*, K. Parker Gaddis * & n
2017 chapter
Imputing Missing Genotypes
In Genetic Data Analysis for Plant and Animal Breeding (pp. 287–309).
2017 chapter
Introduction to ASReml Software
In Genetic Data Analysis for Plant and Animal Breeding (pp. 1–48).
2017 review
Invited review: Inbreeding in the genomics era: Inbreeding, inbreeding depression, and management of genomic variability
[Review of ]. JOURNAL OF DAIRY SCIENCE, 100(8), 6009–6024.
Contributors: J. Howard n, J. Pryce *, C. Baes * & n
2017 chapter
Multi Environmental Trials
In Genetic Data Analysis for Plant and Animal Breeding (pp. 227–262).
2017 chapter
Multivariate Models
In Genetic Data Analysis for Plant and Animal Breeding (pp. 165–201).
2017 journal article
Rumination time as a potential predictor of common diseases in high-productive Holstein dairy cows
Journal of Dairy Research, 84(4), 385–390.
Contributors: R. Moretti *, S. Biffani *, F. Tiezzi n, n , S. Chessa * & R. Bozzi *
2017 chapter
Spatial Analysis
In Genetic Data Analysis for Plant and Animal Breeding (pp. 203–226).
2017 journal article
The relationship between different measures of feed efficiency and feeding behavior traits in Duroc pigs
Journal of Animal Science, 95(8), 3370–3380.
2017 journal article
The relationship between different measures of feed efficiency and feeding behavior traits in Duroc pigs
Journal of Animal Science, 95(8), 3370–3380.
Contributors: D. Lu n, S. Jiao n, F. Tiezzi n, M. Knauer n, Y. Huang, K. Gray n, n
2017 chapter
Variance Modeling in ASReml
In Genetic Data Analysis for Plant and Animal Breeding (pp. 87–106).
2016 journal article
028 The use of alternative genomic metrics in swine nucleus herds to manage the diversity of purebred and crossbred animals
Journal of Animal Science, 94(suppl_2), 13–13.
2016 journal article
029 Mitigating the effect of seasonality on sow reproductive performance using genetic selection
Journal of Animal Science, 94(suppl_2), 14–14.
2016 journal article
0301 A combined coalescence forward in time simulator software for pedigreed populations undergoing selection for complex traits
Journal of Animal Science, 94(suppl_5), 143–144.
2016 journal article
0387 Daily rumination time in Italian Holstein cows: Heritability and correlation with milk production
Journal of Animal Science, 94(suppl_5), 187–188.
2016 article
A method for the identification of unfavorable haplotypes contained within runs of homozygosity that impact fitness traits and its application to different swine nucleus lines.
Howard, J. T., Tiezzi, F., Huang, Y., Gray, K. A., & Maltecca, C. (2016, September). JOURNAL OF ANIMAL SCIENCE, Vol. 94, pp. 26–27.
2016 journal article
Benchmarking dairy herd health status using routinely recorded herd summary data
JOURNAL OF DAIRY SCIENCE, 99(2), 1298–1314.
Contributors: K. Parker Gaddis *, J. Cole *, J. Clay * & n
2016 journal article
Causal relationships between clinical mastitis events, milk yields and lactation persistency in US Holsteins
LIVESTOCK SCIENCE, 189, 8–16.
Contributors: K. Dhakal*, F. Tiezzi n, J. Clay * & n
2016 journal article
Characterization and management of long runs of homozygosity in parental nucleus lines and their associated crossbred progeny
GENETICS SELECTION EVOLUTION, 48(1).
Contributors: J. Howard n, F. Tiezzi n, Y. Huang, K. Gray & n
2016 journal article
The use of multiple imputation for the accurate measurements of individual feed intake by electronic feeders
Journal of Animal Science, 94(2), 824–832.
2015 journal article
A Genome-Wide Association Study for Clinical Mastitis in First Parity US Holstein Cows Using Single-Step Approach and Genomic Matrix Re-Weighting Procedure
PLOS ONE, 10(2).
2015 journal article
Accounting for trait architecture in genomic predictions of US Holstein cattle using a weighted realized relationship matrix
GENETICS SELECTION EVOLUTION, 47(1).
Contributors: F. Tiezzi n & n
2015 conference paper
Benchmarking cow health status with dairy herd summary data
Proceedings of the 21st Conference of the Association for the Advancement of Animal Breeding and Genetics (AAABG), 366–369. Victoria, Australia: Association for the Advancement of Animal Breeding and Genetics.
Event: 21st Conference of the Association for the Advancement of Animal Breeding and Genetics (AAABG) at Lorne, Victoria, Australia on September 28-30, 2015
2015 journal article
Causal relationships between milk quality and coagulation properties in Italian Holstein-Friesian dairy cattle
GENETICS SELECTION EVOLUTION, 47(1).
Contributors: F. Tiezzi n, B. Valente *, M. Cassandro * & n
2015 journal article
Characterizing homozygosity across United States, New Zealand and Australian Jersey cow and bull populations
BMC GENOMICS, 16(1).
Contributors: J. Howard n, n , M. Haile-Mariam *, B. Hayes * & J. Pryce *
2015 journal article
Comparison between different statistical models for the prediction of direct genetic component on embryo establishment and survival in Italian Brown Swiss dairy cattle
LIVESTOCK SCIENCE, 180, 6–13.
Contributors: F. Tiezzi n, n , A. Cecchinato * & G. Bittante *
2015 journal article
Differential Gene Expression across Breed and Sex in Commercial Pigs Administered Fenbendazole and Flunixin Meglumine
PLOS ONE, 10(9), e0137830.
Contributors: J. Howard n, . A.T. O'Nan n, n , R. Baynes n & M. Ashwell n
Ed(s): F. Kobeissy
2015 journal article
Genetic Architecture of Micro-Environmental Plasticity in Drosophila melanogaster
Scientific Reports, 5(1).
Contributors: F. Morgante*, P. Sørensen *, D. Sorensen *, * & T. Mackay *
2015 journal article
Genome-wide association study on legendre random regression coefficients for the growth and feed intake trajectory on Duroc Boars
BMC GENETICS, 16(1).
Contributors: J. Howard n, S. Jiao n, F. Tiezzi n, Y. Huang, K. Gray & n
2015 journal article
Genomic prediction of disease occurrence using producer-recorded health data: a comparison of methods
GENETICS SELECTION EVOLUTION, 47(1).
Contributors: K. Parker Gaddis n, F. Tiezzi n, J. Cole *, J. Clay * & n
2015 journal article
Identification and validation of copy number variants in Italian Brown Swiss dairy cattle using Illumina Bovine SNP50 Beadchip (R)
ITALIAN JOURNAL OF ANIMAL SCIENCE, 14(3), 552-+.
Contributors: A. Bagnato *, M. Strillacci *, L. Pellegrino*, F. Schiavini*, E. Frigo*, A. Rossoni, L. Fontanesi *, n , R. Prinsen*, M. Dolezal
2015 journal article
Inferring causal relationships between reproductive and metabolic health disorders and production traits in first-lactation US Holsteins using recursive models
JOURNAL OF DAIRY SCIENCE, 98(4), 2713–2726.
Contributors: K. Dhakal n, F. Tiezzi n, J. Clay * & n
2015 journal article
Investigation of regions impacting inbreeding depression and their association with the additive genetic effect for United States and Australia Jersey dairy cattle
BMC GENOMICS, 16(1).
Contributors: J. Howard n, M. Haile-Mariam, J. Pryce & n
2015 conference paper
Regions impacting inbreeding depression and their association with additive genetic effects for jersey cattle from the United States of America and Australia
Proceedings of the 21st Association for the Advancement of Animal Breeding and Genetics Conference, 21, 346–349.
Event: 21st Association for the Advancement of Animal Breeding and Genetics Conference at Lorne, Victoria, Australia on September 28-30, 2015
2015 journal article
Short communication: Genomic selection for hoof lesions in first-parity US Holsteins
JOURNAL OF DAIRY SCIENCE, 98(5), 3502–3507.
Contributors: K. Dhakal n, F. Tiezzi n, J. Clay* & n
2015 journal article
Variance component estimates for alternative litter size traits in swine
JOURNAL OF ANIMAL SCIENCE, 93(11), 5153–5163.
Contributors: A. Putz n, F. Tiezzi n, n , K. Gray & M. Knauer n
2014 conference paper
A multifaceted approach to the use of genomic selection in new traits
Proceedings of the 10th World Congress of Genetics Applied to Livestock Production. Presented at the 10th World Congress of Genetics Applied to Livestock Production, Vancouver, BC, Canada.
Event: 10th World Congress of Genetics Applied to Livestock Production at Vancouver, BC, Canada on August 17-22, 2014
2014 conference paper
Causal Relationships Between Milk Yield, Body Condition Score and Fertility in Italian Holstein Friesian Dairy Cattle
Proceedings, 10th World Congress of Genetics Applied to Livestock Production. Presented at the 10th World Congress of Genetics Applied to Livestock Production, Vancouver, BC, Canada.
Event: 10th World Congress of Genetics Applied to Livestock Production at Vancouver, BC, Canada on August 17-22, 2014
2014 journal article
Feed intake, average daily gain, feed efficiency, and real-time ultrasound traits in Duroc pigs: I. Genetic parameter estimation and accuracy of genomic prediction
JOURNAL OF ANIMAL SCIENCE, 92(6), 2377–2386.
Contributors: S. Jiao n, n , K. Gray & J. Cassady n
2014 journal article
Feed intake, average daily gain, feed efficiency, and real-time ultrasound traits in Duroc pigs: II. Genomewide association
Journal of Animal Sc