@article{naik_wang_sederoff_chiang_williams_ducoste_2018, title={Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis}, volume={13}, DOI={10.1371/journal.pone.0193896}, number={3}, journal={PLoS One}, author={Naik, P. and Wang, J. P. and Sederoff, R. and Chiang, V. and Williams, C. and Ducoste, J. J.}, year={2018}}
 @article{wang_matthews_williams_shi_yang_tunlaya-anukit_chen_li_liu_lin_et al._2018, title={Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis}, volume={9}, DOI={10.1038/s41467-018-03863-z}, journal={Nature Communications}, author={Wang, J. P. and Matthews, M. L. and Williams, C. M. and Shi, R. and Yang, C. M. and Tunlaya-Anukit, S. and Chen, H. C. and Li, Q. Z. and Liu, J. and Lin, C. Y. and et al.}, year={2018}}
 @article{alexander_williams_2017, title={Design of digital filters}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={205–275}}
 @article{alexander_williams_2017, title={Digital signal processing systems design}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={455–517}}
 @article{alexander_williams_2017, title={Digital signal processing: principles, algorithms and system design preface}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={XXVII-}}
 @article{alexander_williams_2017, title={Finite word length effects}, DOI={10.1016/b978-0-12-804547-3.00006-1}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={351–388}}
 @article{alexander_williams_2017, title={Frequency domain analysis}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={159–204}}
 @article{alexander_williams_2017, title={Fundamental DSP concepts}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={19–157}}
 @article{alexander_williams_2017, title={Hardware implementation}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={519–561}}
 @article{alexander_williams_2017, title={Implementation of discrete time systems}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={277–350}}
 @article{alexander_williams_2017, title={Introduction to digital signal processing}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={1–17}}
 @misc{muhammad_schmittling_williams_long_2017, title={More than meets the eye: emergent properties of transcription factors networks in arabidopsis}, volume={1860}, DOI={10.1016/j.bbagrm.2016.07.017}, number={1}, journal={Biochimica et Biophysica Acta. Gene Regulatory Mechanisms}, author={Muhammad, D. and Schmittling, S. and Williams, C. and Long, T. A.}, year={2017}, pages={64–74}}
 @article{alexander_williams_2017, title={Multirate digital signal processing}, journal={Digital Signal Processing: Principles, Algorithms and System Design}, author={Alexander, W. E. and Williams, C. M.}, year={2017}, pages={389–454}}
 @article{balaguer_fisher_clark_fernandez-espinosa_moller_weijers_lohmann_williams_lorenzo_sozzani_et al._2017, title={Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells}, volume={114}, DOI={10.1073/pnas.1707566114}, number={36}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Balaguer, M. A. D. and Fisher, A. P. and Clark, N. M. and Fernandez-Espinosa, M. G. and Moller, B. K. and Weijers, D. and Lohmann, J. U. and Williams, C. and Lorenzo, O. and Sozzani, R. and et al.}, year={2017}, pages={E7632–7640}}
 @article{lin_wang_li_chen_liu_loziuk_song_williams_muddiman_sederoff_et al._2015, title={4-coumaroyl and caffeoyl shikimic acids inhibit 4-coumaric acid: Coenzyme a ligases and modulate metabolic flux for 3-hydroxylation in monolignol biosynthesis of Populus trichocarpa}, volume={8}, DOI={10.1016/j.molp.2014.12.003}, number={1}, journal={Molecular Plant}, author={Lin, C. Y. and Wang, J. P. and Li, Q. Z. and Chen, H. C. and Liu, J. and Loziuk, P. and Song, J. and Williams, C. and Muddiman, D. C. and Sederoff, R. R. and et al.}, year={2015}, pages={176–187}}
 @article{koryachko_matthiadis_muhammad_foret_brady_ducoste_tuck_long_williams_2015, title={Clustering and differential alignment algorithm: Identification of early stage regulators in the Arabidopsis thaliana iron deficiency response}, volume={10}, DOI={10.1371/journal.pone.0136591}, number={8}, journal={PLoS One}, author={Koryachko, A. and Matthiadis, A. and Muhammad, D. and Foret, J. and Brady, S. M. and Ducoste, J. J. and Tuck, J. and Long, T. A. and Williams, C.}, year={2015}}
 @article{balaguer_williams_2014, title={Hierarchical modularization of biochemical pathways using fuzzy-C means clustering}, volume={44}, DOI={10.1109/tcyb.2013.2286679}, number={8}, journal={IEEE Transactions on Cybernetics}, author={Balaguer, M. A. D. and Williams, C. M.}, year={2014}, pages={1473–1484}}
 @article{chen_song_wang_lin_ducoste_shuford_liu_li_shi_nepomuceno_et al._2014, title={Systems biology of lignin biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric zcid: Coenzyme A ligase protein complex formation, regulation, and numerical modeling}, volume={26}, DOI={10.1105/tpc.113.119685}, number={3}, journal={Plant Cell}, author={Chen, H. C. and Song, J. and Wang, J. P. and Lin, Y. C. and Ducoste, J. and Shuford, C. M. and Liu, J. and Li, Q. Z. and Shi, R. and Nepomuceno, A. and et al.}, year={2014}, pages={876–893}}
 @article{chen_song_williams_shuford_liu_wang_li_shi_gokce_ducoste_et al._2013, title={Monolignol pathway 4-coumaric acid: Coenzyme a ligases in Populus trichocarpa: Novel specificity, metabolic regulation, and simulation of coenzyme a ligation fluxes}, volume={161}, DOI={10.1104/pp.112.210971}, number={3}, journal={Plant Physiology}, author={Chen, H. C. and Song, J. N. and Williams, C. M. and Shuford, C. M. and Liu, J. and Wang, J. P. and Li, Q. Z. and Shi, R. and Gokce, E. and Ducoste, J. and et al.}, year={2013}, pages={1501–1516}}
 @inbook{nabavi_williams_2012, title={A novel cost function for parameters estimation in oscillatory biochemical systems}, DOI={10.1109/secon.2012.6196978}, booktitle={2012 Proceedings of IEEE Southeastcon}, author={Nabavi, S. and Williams, C. M.}, year={2012}}
 @article{wang_shuford_li_song_lin_sun_chen_williams_muddiman_sederoff_et al._2012, title={Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis}, volume={236}, DOI={10.1007/s00425-012-1663-5}, number={3}, journal={Planta}, author={Wang, J. P. and Shuford, C. M. and Li, Q. Z. and Song, J. N. and Lin, Y. C. and Sun, Y. H. and Chen, H. C. and Williams, C. M. and Muddiman, D. C. and Sederoff, R. R. and et al.}, year={2012}, pages={795–808}}
 @inbook{matthews_williams_2012, title={Region of attraction estimation of biological continuous Boolean models}, DOI={10.1109/icsmc.2012.6377982}, booktitle={Ieee international conference on systems man and cybernetics conference}, author={Matthews, M. L. and Williams, C. M.}, year={2012}, pages={1700–1705}}
 @article{marvel_williams_2012, title={Set membership experimental design for biological systems}, volume={6}, DOI={10.1186/1752-0509-6-21}, journal={BMC Systems Biology}, author={Marvel, S. W. and Williams, C. M.}, year={2012}}
 @inbook{marvel_williams_2012, title={Set membership state and parameter estimation for nonlinear differential equations with sparse discrete measurements}, DOI={10.1109/icsmc.2012.6377679}, booktitle={Ieee international conference on systems man and cybernetics conference}, author={Marvel, S. W. and Williams, C. M.}, year={2012}, pages={72–77}}