2023 article
Achieving Sub-Parts-per-Million Mass Measurement Accuracy on an Orbitrap Mass Spectrometry Imaging Platform without Automatic Gain Control
Kibbe, R. R., & Muddiman, D. C. (2023, April 25). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 4.
2023 article
Automatic z-Axis Correction for IR-MALDESI Mass Spectrometry Imaging of Uneven Surfaces
Xi, Y., Knizner, K. T. T., Garrard, K. P. P., & Muddiman, D. C. C. (2023, June 12). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 6.
2023 article
Comparative analysis of sucrose-embedding for whole-body zebrafish MSI by IR-MALDESI
Wang, M. F., Ritter, M. M., Kullman, S. W., & Muddiman, D. C. (2023, August 29). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 8.
2023 article
Development of an object-based image analysis tool for mass spectrometry imaging ion classification
Eisenberg, S. M., Knizner, K. T., & Muddiman, D. C. (2023, May 24). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 5.
2023 journal article
Enhanced Detection of Charged N-Glycans in the Brain by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometric Imaging
ANALYTICAL CHEMISTRY, 95(29), 10913–10920.
2023 journal article
Evaluating the optimal tissue thickness for mass spectrometry imaging using infrared matrix-assisted laser desorption electrospray ionization
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 37(22).
2023 article
Impact of wavelength and spot size on laser depth of focus: Considerations for mass spectrometry imaging of non-flat samples
Joignant, A. N. N., Xi, Y., & Muddiman, D. C. C. (2023, March 14). JOURNAL OF MASS SPECTROMETRY, Vol. 3.
2023 article
Lipidomic Analysis of Mouse Brain to Evaluate the Efficacy and Preservation of Different Tissue Preparatory Techniques by IR-MALDESI-MSI
Wang, M. F., Sohn, A. L., Samal, J., Erning, K., Segura, T., & Muddiman, D. C. (2023, March 29). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 3.
2023 article
Maximized Spatial Information and Minimized Acquisition Time of Top-Hat IR-MALDESI-MSI of Zebrafish Using Nested Regions of Interest (nROIs)
Joignant, A. N., Ritter, M. M., Knizner, K. T., Garrard, K. P., Kullman, S. W., & Muddiman, D. C. (2023, August 1). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 8.
2023 article
Metabolite Annotation Confidence Score (MACS): A Novel MSI Identification Scoring Tool
Eisenberg, S. M., Knizner, K. T., & Muddiman, D. C. (2023, August 22). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 8.
2023 article
On the importance of color in mass spectrometry imaging (vol 57, e4898, 2022)
Muddiman, D. C. (2023, May). JOURNAL OF MASS SPECTROMETRY, Vol. 58.
2023 article
Predicting Sialic Acid Content of N-Linked Glycans Using the Isotopic Pattern of Chlorine
Palomino, T. V., & Muddiman, D. C. (2023, June 8). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 6.
2023 journal article
Quasi-continuous infrared matrix-assisted laser desorption electrospray ionization source coupled to a quadrupole time-of-flight mass spectrometer for direct analysis from well plates
JOURNAL OF MASS SPECTROMETRY, 58(1).
2023 journal article
SMART: A data reporting standard for mass spectrometry imaging
JOURNAL OF MASS SPECTROMETRY, 58(2).
2023 article
Time of acquisition and high spatial resolution mass spectrometry imaging (vol 58, e4911, 2023)
Muddiman, D. C. (2023, May). JOURNAL OF MASS SPECTROMETRY, Vol. 58.
2023 journal article
Transforming a Mid-infrared Laser Profile from Gaussian to a Top- Hat with a Diffractive Optical Element for Mass Spectrometry Imaging
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 34(1), 10–16.
2022 journal article
An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 119(27).
Contributors: P. Thompson n
2022 journal article
Developing transmission mode for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 36(22).
2022 journal article
Development and validation of a high resolving power absolute quantitative per- and polyfluoroalkyl substances method incorporating Skyline data processing
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 36(11).
2022 journal article
Glycerate from intestinal fructose metabolism induces islet cell damage and glucose intolerance
CELL METABOLISM, 34(7), 1042-+.
2022 article
Highlighting Functional Mass Spectrometry Imaging Methods in Bioanalysis
Mellinger, A. L., Muddiman, D. C., & Gamcsik, M. P. (2022, June 27). JOURNAL OF PROTEOME RESEARCH, Vol. 6.
2022 journal article
Improved spatial resolution of infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging using a reflective objective
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 36(23).
2022 journal article
Interrogating the Metabolomic Profile of Amyotrophic Lateral Sclerosis in the Post-Mortem Human Brain by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Mass Spectrometry Imaging (MSI)
METABOLITES, 12(11).
2022 journal article
Mapping glycine uptake and its metabolic conversion to glutathione in mouse mammary tumors using functional mass spectrometry imaging
FREE RADICAL BIOLOGY AND MEDICINE, 193, 677–684.
2022 journal article
Mass Spectrometry Imaging of N-Linked Glycans in a Formalin-Fixed Paraffin-Embedded Human Prostate by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization
JOURNAL OF PROTEOME RESEARCH, 21(1), 243–249.
2022 journal article
Multimodal Mass Spectrometry Imaging of Rat Brain Using IR-MALDESI and NanoPOTS-LC-MS/MS
JOURNAL OF PROTEOME RESEARCH, 21(3), 713–720.
2022 journal article
Multiple Infusion Start Time Mass Spectrometry Imaging of Dynamic SIL-Glutathione Biosynthesis Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization
JOURNAL OF PROTEOME RESEARCH, 21(3), 747–757.
2022 article
Next-Generation Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Source for Mass Spectrometry Imaging and High-Throughput Screening
Knizner, K. T., Guymon, J. P., Garrard, K. P., Bouvree, G., Manni, J., Hauschild, J.-P., … Muddiman, D. C. (2022, September 29). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 9.
2022 journal article
Normalization techniques for high-throughput screening by infrared matrix-assisted laser desorption electrospray ionization mass spectrometry
JOURNAL OF MASS SPECTROMETRY, 57(6).
2022 journal article
Novel matrix strategies for improved ionization and spatial resolution using IR-MALDESI mass spectrometry imaging
JOURNAL OF MASS SPECTROMETRY, 57(8).
2022 journal article
On the importance of color in mass spectrometry imaging
JOURNAL OF MASS SPECTROMETRY, 57(12).
2022 journal article
Optimized C-Trap Timing of an Orbitrap 240 Mass Spectrometer for High-Throughput Screening and Native MS by IR-MALDESI
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 33(2), 328–334.
2022 article
Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain
Muthusamy, N., Williams, T. I., O'Toole, R., Brudvig, J. J., Adler, K. B., Weimer, J. M., … Ghashghaei, H. T. (2022, January 24). GEROSCIENCE, Vol. 1.
Contributors: N. Muthusamy n, T. Williams n , R. O’Toole*, J. Brudvig *, K. Adler n, J. Weimer *, n , H. Ghashghaei n
2021 journal article
Enhancing Metabolomic Coverage in Positive Ionization Mode Using Dicationic Reagents by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization
METABOLITES, 11(12).
2021 journal article
Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa
FRONTIERS IN PLANT SCIENCE, 12.
2021 journal article
GlycoHunter: An Open-Source Software for the Detection and Relative Quantification of INLIGHT-Labeled N-Linked Glycans
JOURNAL OF PROTEOME RESEARCH, 20(4), 1855–1863.
2021 journal article
In situ detection of fatty acid C=C positional isomers by coupling on-tissue mCPBA epoxidation with infrared matrix-assisted laser desorption electrospray ionization mass spectrometry
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 35(13).
2021 journal article
Investigations of beta-carotene radical cation formation in infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 35(16).
2021 article
Obituary Michael S. Bereman (1981-2021)
Muddiman, D. C., & MacCoss, M. J. (2021, May 5). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 32, pp. 1272–1274.
2021 journal article
Spatially resolved metabolomic characterization of muscle invasive bladder cancer by mass spectrometry imaging
METABOLOMICS, 17(8).
2021 article
The development and application of matrix assisted laser desorption electrospray ionization: The teenage years
Bagley, M. C., Garrard, K. P., & Muddiman, D. C. (2021, May 24). MASS SPECTROMETRY REVIEWS, Vol. 5.
2021 journal article
Three-dimensional (3D) imaging of lipids in skin tissues with infrared matrix-assisted laser desorption electrospray ionization (MALDESI) mass spectrometry
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 413(10), 2793–2801.
2021 article
Understanding the electrospray ionization response factors of per- and poly-fluoroalkyl substances (PFAS)
Enders, J. R., Grace M. O'Neill, Whitten, J. L., & Muddiman, D. C. (2021, July 21). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 7.
2021 article
Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT (TM) derivatized N-linked glycans in biological samples
Butler, K. E., Kalmar, J. G., Muddiman, D. C., & Baker, E. S. (2021, August 4). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 8.
2020 journal article
3D Imaging and metabolomic profiling reveal higher neuroactive kavalactone contents in lateral roots and crown root peels of Piper methysticum (kava)
GIGASCIENCE, 9(9).
2020 journal article
A Versatile Platform for Mass Spectrometry Imaging of Arbitrary Spatial Patterns
Journal of the American Society for Mass Spectrometry, 31(12), 2547–2552.
2020 journal article
Analysis of neurotransmitters in rat placenta exposed to flame retardants using IR-MALDESI mass spectrometry imaging
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(15), 3745–3752.
2020 journal article
Comparative Proteomic Analysis of Wild Type and Mutant Lacking an SCF E3 Ligase F-Box Protein in Magnaporthe oryzae
JOURNAL OF PROTEOME RESEARCH, 19(9), 3761–3768.
2020 journal article
Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications
Journal of the American Society for Mass Spectrometry, 31(3), 642–650.
2020 journal article
Determination of Optimal Electrospray Parameters for Lipidomics in Infrared-Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry Imaging
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 31(2), 319–325.
2020 journal article
Development of a relative quantification method for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 34(6).
2020 journal article
Direct Analysis of Native N-Linked Glycans by IR-MALDESI
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 31(8), 1759–1762.
2020 journal article
Effects of Prenatal Exposure to a Mixture of Organophosphhate Flame Ritardants on Placental Gene Expression and Serotonergic Innervaion in the Fetal Rat Brain
TOXICOLOGICAL SCIENCES, 176(1), 203–223.
2020 journal article
Enhanced protocol for quantitativeN-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)(TM)
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(27), 7569–7579.
2020 journal article
Infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) mass spectrometry imaging analysis of endogenous metabolites in cherry tomatoes
ANALYST, 145(16), 5516–5523.
2020 journal article
Investigating host-pathogen meta-metabolic interactions of Magnaporthe oryzae infected barley using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(1), 139–147.
2020 journal article
Lipidomic profiling of single mammalian cells by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(29), 8211–8222.
2020 journal article
Metabolite Profiling Reveals Predictive Biomarkers and the Absence of beta-Methyl Amino-L-alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis
JOURNAL OF PROTEOME RESEARCH, 19(8), 3276–3285.
2020 journal article
Methods for Cryosectioning and Mass Spectrometry Imaging of Whole-Body Zebrafish
Journal of the American Society for Mass Spectrometry, 31(4), 768–772.
2020 journal article
Three-Dimensional Imaging with Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 31(2), 292–297.
2019 journal article
Artemisinin Biosynthesis in Non-glandular Trichome Cells of Artemisia annua
Molecular Plant, 12(5), 704–714.
2019 journal article
CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa
NEW PHYTOLOGIST, 222(1), 244–260.
2019 journal article
Discovery and quantification of bioactive peptides in fermented cucumber by direct analysis IR-MALDESI mass spectrometry and LC-QQQ-MS
FOOD CHEMISTRY, 271, 715–723.
2019 journal article
Discriminating normal regions within cancerous hen ovarian tissue using multivariate hyperspectral image analysis
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 33(4), 381–391.
2019 journal article
Heterogeneous antiretroviral drug distribution and HIV/SHIV detection in the gut of three species
SCIENCE TRANSLATIONAL MEDICINE, 11(499).
2019 journal article
Internal Energy Deposition in Infrared Matrix-Assisted Laser Desorption Electrospray Ionization With and Without the Use of Ice as a Matrix
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 30(11), 2380–2391.
2019 journal article
Label-Free Quantitative Proteomics of Enriched Nuclei from Sugarcane (Saccharum ssp) Stems in Response to Drought Stress
PROTEOMICS, 19(14).
2019 journal article
Mass spectrometry imaging (MSI) of fresh bones using infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
ANALYTICAL METHODS, 11(46), 5929–5938.
2019 journal article
NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods
Molecular & Cellular Proteomics, 19(1), 11–30.
2019 journal article
Quantitative proteomic analysis of tomato genotypes with differential cadmium tolerance
ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 26(25), 26039–26051.
2019 journal article
Systematic evaluation of repeatability of IR-MALDESI-MS and normalization strategies for correcting the analytical variation and improving image quality
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 411(22), 5729–5743.
2018 journal article
A novel integrated strategy for the detection and quantification of the neurotoxin beta-N-methylamino-l-alanine in environmental samples
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 410(10), 2597–2605.
2018 journal article
Characterization of a novel miniaturized burst-mode infrared laser system for IR-MALDESI mass spectrometry imaging
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 410(9), 2395–2402.
2018 journal article
Characterization of the Spectral Accuracy of an Orbitrap Mass Analyzer Using Isotope Ratio Mass Spectrometry
Analytical Chemistry, 90(3), 1897–1906.
2018 journal article
Demonstration of hydrazide tagging for O-glycans and a central composite design of experiments optimization using the INLIGHT (TM) reagent
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 410(5), 1409–1415.
2018 journal article
Evaluation of Digital Image Recognition Methods for Mass Spectrometry Imaging Data Analysis
Journal of The American Society for Mass Spectrometry, 29(12), 2467–2470.
2018 journal article
IR-MALDESI mass spectrometry imaging of underivatized neurotransmitters in brain tissue of rats exposed to tetrabromobisphenol A
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 410(30), 7979–7986.
2018 journal article
IR-MALDESI method optimization based on time-resolved measurement of ion yields
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 410(3), 963–970.
2018 journal article
Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis
Nature Communications, 9(1), 1579.
Contributors: J. Wang* , M. Matthews n, C. Williams n , R. Shi n, C. Yang n, S. Tunlaya-Anukit n, H. Chen n, Q. Li *
2018 journal article
Jürgen H. Gross: Mass spectrometry: a textbook, 3rd ed.
Analytical and Bioanalytical Chemistry, 410(8), 2051–2052.
2018 journal article
Quantitative mass spectrometry imaging of glutathione in healthy and cancerous hen ovarian tissue sections by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
ANALYST, 143(3), 654–661.
2017 journal article
Climate projections of spatial variations in coastal storm surges along the Gulf of Mexico and U.S. east coast
Journal of Ocean University of China, 16(1), 1–7.
2017 journal article
Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae
Proteome Science, 15(1).
2017 journal article
Cover Image
Rapid Communications in Mass Spectrometry, 31(22), i-i.
2017 journal article
DRILL: An Electrospray Ionization-Mass Spectrometry Interface for Improved Sensitivity via Inertial Droplet Sorting and Electrohydrodynamic Focusing in a Swirling Flow
ANALYTICAL CHEMISTRY, 89(17), 8981–8987.
2017 journal article
Direct analysis of terpenes from biological buffer systems using SESI and IR-MALDESI
Analytical and Bioanalytical Chemistry, 410(3), 953–962.
2017 journal article
Direct screening of enzyme activity using infrared matrix-assisted laser desorption electrospray ionization
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 31(22), 1868–1874.
2017 journal article
IR-MALDESI Mass Spectrometry Imaging at 50 Micron Spatial Resolution
Journal of The American Society for Mass Spectrometry, 28(10), 2099–2107.
2017 article
Imaging antiretroviral distribution within gastrointestinal tissues across pre-clinical species: implications for hiv eradication
Clinical Pharmacology & Therapeutics, Vol. 101, pp. S17–17.
2017 journal article
MSiReader v1.0: Evolving Open-Source Mass Spectrometry Imaging Software for Targeted and Untargeted Analyses
Journal of The American Society for Mass Spectrometry, 29(1), 8–16.
2017 journal article
Mass spectrometric detection of chlorophyll a and the tetrapyrrole secondary metabolite tolyporphin A in the filamentous cyanobacterium HT-58-2. Approaches to high-throughput screening of intact cyanobacteria
JOURNAL OF PORPHYRINS AND PHTHALOCYANINES, 21(11), 759–768.
2017 journal article
N-linked glycosite profiling and use of Skyline as a platform for characterization and relative quantification of glycans in differentiating xylem of Populus trichocarpa
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 409(2), 487–497.
2017 journal article
Perfluorinated alcohol induced coacervates as extraction media for proteomic analysis
JOURNAL OF CHROMATOGRAPHY A, 1523, 293–299.
2017 article
Recent advances in glycomics, glycoproteomics and allied topics
Mechref, Y., & Muddiman, D. C. (2017, January). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 409, pp. 355–357.
2017 journal article
The PeptideAtlas of the Domestic Laying Hen
JOURNAL OF PROTEOME RESEARCH, 16(3), 1352–1363.
2017 journal article
The scope of Analytical and Bioanalytical Chemistry (ABC)
Analytical and Bioanalytical Chemistry, 410(3), 649–650.
2017 journal article
Xylose Migration During Tandem Mass Spectrometry of N-Linked Glycans
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 28(4), 729–732.
2016 journal article
A Quantitative Glycomics and Proteomics Combined Purification Strategy
Journal of Visualized Experiments, 3(109).
2016 journal article
A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa
Tree Genetics & Genomes, 12(2).
2016 journal article
Analysis of Antiretrovirals in Single Hair Strands for Evaluation of Drug Adherence with Infrared-Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry Imaging
ANALYTICAL CHEMISTRY, 88(2), 1336–1344.
2016 journal article
Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease
JOURNAL OF PROTEOME RESEARCH, 15(7), 2265–2282.
2016 journal article
Direct Analysis of Triterpenes from High-Salt Fermented Cucumbers Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI)
Journal of The American Society for Mass Spectrometry, 28(2), 370–375.
2016 journal article
Enhanced Lipidome Coverage in Shotgun Analyses by using Gas-Phase Fractionation
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 27(11), 1735–1744.
2016 journal article
Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein
ANALYTICAL BIOCHEMISTRY, 512, 114–119.
2016 journal article
Identification of Epigenetic Factor Proteins Expressed in Human Embryonic Stem Cell-Derived Trophoblasts and in Human Placental Trophoblasts
JOURNAL OF PROTEOME RESEARCH, 15(8), 2433–2444.
2016 review
Infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging analysis of biospecimens
[Review of ]. ANALYST, 141(18), 5236–5245.
2016 chapter
MALDESI: Fundamentals, Direct Analysis, and MS Imaging
In Advances in MALDI and Laser-Induced Soft Ionization Mass Spectrometry (pp. 169–182).
2016 review
Optimizing Mass Spectrometry Analyses: A Tailored Review on the Utility of Design of Experiments
[Review of ]. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 27(5), 767–785.
2016 journal article
Polarity switching mass spectrometry imaging of healthy and cancerous hen ovarian tissue sections by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
ANALYST, 141(2), 595–605.
2016 journal article
TransOmic analysis of forebrain sections in Sp2 conditional knockout embryonic mice using IR-MALDESI imaging of lipids and LC-MS/MS label-free proteomics
Analytical and Bioanalytical Chemistry, 408(13), 3453–3474.
2016 journal article
Wall modified photonic crystal fibre capillaries as porous layer open tubular columns for in-capillary micro-extraction and capillary chromatography
ANALYTICA CHIMICA ACTA, 905, 1–7.
2016 article
What if you could only publish 50 papers your entire career?
Muddiman, D. C. (2016, January). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 408, pp. 663–664.
2016 journal article
Whole-body Mass Spectrometry Imaging by Infrared Matrix-assisted Laser Desorption Electrospray Ionization (IR-MALDESI)
Journal of Visualized Experiments, 3(109).
2015 journal article
4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa
MOLECULAR PLANT, 8(1), 176–187.
2015 journal article
Activin/Nodal Signaling Switches the Terminal Fate of Human Embryonic Stem Cell-derived Trophoblasts
JOURNAL OF BIOLOGICAL CHEMISTRY, 290(14), 8834–8848.
2015 journal article
Analysis of trace fibers by IR-MALDESI imaging coupled with high resolving power MS
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 407(3), 813–820.
2015 journal article
Assessing drug and metabolite detection in liver tissue by UV-MALDI and IR-MALDESI mass spectrometry imaging coupled to FT-ICR MS
INTERNATIONAL JOURNAL OF MASS SPECTROMETRY, 377, 448–455.
2015 journal article
Cellular-level mass spectrometry imaging using infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) by oversampling
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 407(8), 2265–2271.
2015 journal article
Definitive Screening Design Optimization of Mass Spectrometry Parameters for Sensitive Comparison of Filter and Solid Phase Extraction Purified, INLIGHT Plasma N-Glycans
ANALYTICAL CHEMISTRY, 87(14), 7305–7312.
2015 journal article
Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa
JOURNAL OF PROTEOME RESEARCH, 14(10), 4158–4168.
Contributors: P. Loziuk n, J. Parker n, W. Li n, C. Lin n, J. Wang n , Q. Li *, R. Sederoff n, V. Chiang n, n
2015 journal article
Global Proteomic Analysis of Functional Compartments in Immature Avian Follicles Using Laser Microdissection Coupled to LC-MS/MS
JOURNAL OF PROTEOME RESEARCH, 14(9), 3912–3923.
2015 journal article
In-depth LC-MS/MS analysis of the chicken ovarian cancer proteome reveals conserved and novel differentially regulated proteins in humans
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 407(22), 6851–6863.
2015 journal article
Influence of C-Trap Ion Accumulation Time on the Detectability of Analytes in IR-MALDESI MSI
ANALYTICAL CHEMISTRY, 87(20), 10483–10490.
2015 journal article
Influence of Desorption Conditions on Analyte Sensitivity and Internal Energy in Discrete Tissue or Whole Body Imaging by IR-MALDESI
Journal of The American Society for Mass Spectrometry, 26(6), 899–910.
2015 journal article
Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins
PROTEOMICS, 15(15), 2678–2690.
Contributors: J. Schilling n, A. Nepomuceno n, A. Planchart n , J. Yoder n , R. Kelly n , n , H. Daniels n, N. Hiramatsu*, B. Reading n
2015 journal article
Mass Spectrometry Imaging Reveals Heterogeneous Efavirenz Distribution within Putative HIV Reservoirs
ANTIMICROBIAL AGENTS AND CHEMOTHERAPY, 59(5), 2944–2948.
2015 journal article
Mechanisms of Egg Yolk Formation and Implications on Early Life History of White Perch (Morone americana)
PLOS ONE, 10(11).
2015 personal communication
Michael Gross: 25 Years of Dedication and Leadership of JASMS (1990-2015)
Muddiman, D. C. (2015, January).
2015 journal article
Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development
Journal of Proteome Research, 14(6), 2408–2424.
2015 journal article
Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis
Proceedings of the National Academy of Sciences, 112(27), 8481–8486.
2015 journal article
Quantitative mass spectrometry imaging of emtricitabine in cervical tissue model using infrared matrix-assisted laser desorption electrospray ionization
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 407(8), 2073–2084.
2015 journal article
Relative Quantification and Higher-Order Modeling of the Plasma Glycan Cancer Burden Ratio in Ovarian Cancer Case-Control Samples
JOURNAL OF PROTEOME RESEARCH, 14(10), 4394–4401.
2014 journal article
Accurate Identification of Deamidated Peptides in Global Proteomics Using a Quadrupole Orbitrap Mass Spectrometer
JOURNAL OF PROTEOME RESEARCH, 13(2), 777–785.
2014 article
Are Presentations at ASMS Conferences Publications?
Muddiman, D. C., & Weintraub, S. T. (2014, March). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 25, pp. 301–302.
2014 chapter
Atmospheric Pressure Mass Spectrometry Imaging
In R. A. Meyers (Ed.), Encyclopedia of Analytical Chemistry: Applications, Theory and Instrumentation (pp. 1–44).
Ed(s): R. Meyers
2014 journal article
C/EBPα regulates CRL4Cdt2-mediated degradation of p21 in response to UVB-induced DNA damage to control the G1/S checkpoint
Cell Cycle, 13(22), 3602–3610.
2014 journal article
Compartment Proteomics Analysis of White Perch (Morone americana) Ovary Using Support Vector Machines
JOURNAL OF PROTEOME RESEARCH, 13(3), 1515–1526.
2014 journal article
Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa
The Plant Cell, 26(3), 894–914.
2014 journal article
Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry
ANALYST, 139(21), 5439–5450.
2014 journal article
Evaluating nonpolar surface area and liquid chromatography/mass spectrometry response: an application for site occupancy measurements for enzyme intermediates in polyketide biosynthesis
Rapid Communications in Mass Spectrometry, 28(23), 2511–2522.
2014 article
Focus on Advancing High Performance Mass Spectrometry, Honoring Dr. Richard D. Smith, Recipient of the 2013 Award for a Distinguished Contribution in Mass Spectrometry
Baker, E. S., Muddiman, D. C., & Loo, J. A. (2014, December). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 25, pp. 1997–1999.
2014 journal article
Hierarchical Self-Assembly of Supramolecular Hydrophobic Metallacycles into Ordered Nanostructures
CHEMISTRY-AN ASIAN JOURNAL, 9(10), 2928–2936.
2014 journal article
IR-MALDESI Mass Spectrometry Imaging of Biological Tissue Sections Using Ice as a Matrix
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 25(3), 319–328.
2014 journal article
Mapping Antiretroviral Drugs in Tissue by IR-MALDESI MSI Coupled to the Q Exactive and Comparison with LC-MS/MS SRM Assay
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 25(12), 2038–2047.
2014 article
Reply to the Comment on: "Utilizing Artificial Neural Networks in MATLAB to Achieve Parts-Per-Billion Mass Measurement Accuracy with a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer" by D. Keith Williams Jr., Alexander L. Kovach, David C. Muddiman, and Kenneth W. Hanck. J-Am. Soc. Mass Spectrom. 20, 1303-1310 (2009)
Muddiman, D. C. (2014, April). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 25, pp. 697–697.
2014 journal article
Silver dopants for targeted and untargeted direct analysis of unsaturated lipids via infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 28(22), 2461–2470.
2014 journal article
Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling
The Plant Cell, 26(3), 876–893.
Contributors: H. Chen n, J. Song n, J. Wang n , Y. Lin n, J. Ducoste n , C. Shuford n, J. Liu n, Q. Li n
2013 journal article
Comparative Proteomic Analysis and IgE Binding Properties of Peanut Seed and Testa (Skin)
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 61(16), 3957–3968.
2013 journal article
Direct Analysis of Textile Fabrics and Dyes Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry
ANALYTICAL CHEMISTRY, 85(2), 831–836.
2013 journal article
Factorial Experimental Designs Elucidate Significant Variables Affecting Data Acquisition on a Quadrupole Orbitrap Mass Spectrometer
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(10), 1501–1512.
2013 journal article
Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT): A Novel Glycan-Relative Quantification Strategy
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(9), 1376–1384.
2013 journal article
Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Imaging Source Coupled to a FT-ICR Mass Spectrometer
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(1), 92–100.
2013 journal article
MSiReader: An Open-Source Interface to View and Analyze High Resolving Power MS Imaging Files on Matlab Platform
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(5), 718–721.
2013 journal article
Mass Recalibration of FT-ICR Mass Spectrometry Imaging Data Using the Average Frequency Shift of Ambient Ions
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(7), 1137–1145.
2013 journal article
Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes
PLANT PHYSIOLOGY, 161(3), 1501–1516.
Contributors: H. Chen n, J. Song n, C. Williams n , C. Shuford n, J. Liu n, J. Wang n , Q. Li n, R. Shi n
2013 journal article
Multi-peptide nLC-PC-IDMS-SRM-based Assay for the quantification of biomarkers in the chicken ovarian cancer model
Methods, 61(3), 323–330.
2013 journal article
Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa
Planta, 238(3), 487–497.
Contributors: R. Shi n, C. Shuford n, J. Wang n , Y. Sun n, Z. Yang n, H. Chen n, S. Tunlaya-Anukit n, Q. Li n
2013 journal article
Temporal Analysis of theMagnaporthe OryzaeProteome During Conidial Germination and Cyclic AMP (cAMP)-mediated Appressorium Formation
Molecular & Cellular Proteomics, 12(8), 2249–2265.
2013 journal article
The use of a xylosylated plant glycoprotein as an internal standard accounting for N-linked glycan cleavage and sample preparation variability
Rapid Communications in Mass Spectrometry, 27(12), 1354–1358.
2013 journal article
Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments
JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829.