Works (413)
2026 article
Demonstrating Voxel‐by‐Voxel (V × V) Single‐Point Calibration in Whole‐Body Zebrafish by IR‐MALDESI Quantitative MSI
Joignant, A. N., Vega, S. J., & Muddiman, D. C. (2026, January 12). Journal of Mass Spectrometry, Vol. 1.
open access via doi.org (publisher)2026 article
Integrating Remote Sensing and Metabolomics to Assess Synergistic Effects of Phosphate Deficiency, Drought, and AMF Symbiosis in Soybean
Hassan, M. A., Kibbe, R. R., Muddiman, D. C., & Chang, C. Y. Y. (2026, January 1). Physiologia Plantarum, Vol. 1.
2026 article
Resolving the glycosaminoglycan signature of ischemic stroke brain using PRM-based IR-MALDESI mass spectrometry imaging
Palomino, T. V., Campbell, N., Ouyang, Y., Naik, N., Hawkridge, A. M., Segura, T., & Muddiman, D. C. (2026, January 23). Analytical and Bioanalytical Chemistry, Vol. 1.
2026 article
Spatially resolved lipids in a mouse brain model of globoid cell leukodystrophy via IR-MALDESI MSI and parallel reaction monitoring MSI
Hunter, S. N., Wang, M. F., Thomas, B. N., Filiano, A. J., & Muddiman, D. C. (2026, January 23). Analytical and Bioanalytical Chemistry, Vol. 1.
2025 article
A Strategy to Achieve Sub‐Parts‐per‐Million Mass Measurement Accuracy of N‐Linked Glycans Using Infrared Matrix‐Assisted Laser Desorption Electrospray Ionization
Adepoju, A. A., Palomino, T. V., Sohn, A. L., & Muddiman, D. C. (2025, September 29). Journal of Mass Spectrometry, Vol. 60.
2025 article
Comparative proteomic analysis of skin wound healing responses to biomaterial treatments identifies key pathways which govern differential regenerative outcomes
Suarez-Arnedo, A., Caston, E. L. P., Liu, Y., Bai, H., Muddiman, D. C., & Segura, T. (2025, September 4). Biomaterials, Vol. 326.
2025 article
Comparative proteomic analysis of skin wound healing responses to biomaterial treatments identifies key pathways which govern differential regenerative outcomes
Suarez-Arnedo, A., Caston, E. L. P., Liu, Y., Baia, H., Muddiman, D., & Segura, T. (2025, May 24). (Vol. 5). Vol. 5.
2025 article
Comparison of Mid‐Infrared and Ultraviolet Lasers Coupled to the MALDESI Source for the Detection of Secondary Metabolites and Structural Lipids in Arabidopsis thaliana
Ashbacher, S. M., Manni, J. G., & Muddiman, D. C. (2025, February 18). Journal of Mass Spectrometry, Vol. 3.
2025 article
Demonstrating voxel-by-voxel (V × V) single-point calibration in liver tissue by IR-MALDESI quantitative MSI
Bruce, E. R., Kibbe, R. R., Opperman, L. J., & Muddiman, D. C. (2025, September 29). Analytical and Bioanalytical Chemistry, Vol. 9.
2025 article
Development and Optimization of an Electrospray Diverter for Reduced Background Signal in Ambient Ionization Sources
Eisenberg, S. M., Joignant, A. N., Trumbull, J. D., Hernandez, D., Chang-Yen, D., Wouters, E. R., … Muddiman, D. C. (2025, December 8). Journal of the American Society for Mass Spectrometry, Vol. 12.
2025 article
Distinguishing the Metabolic Effect of Fetal and Adult Fibrinogen on Human Fibroblast Cell Culture by IR-MALDESI Mass Spectrometry Imaging
Joignant, A. N., Sheridan, A., Brown, A. C., & Muddiman, D. C. (2025, April 7). Journal of the American Society for Mass Spectrometry, Vol. 4.
2025 article
Exploring ammonium salt doping to enhance ion abundance for quantitative mass spectrometry imaging
Dunnavant, A. R., Eisenberg, S. M., & Muddiman, D. C. (2025, November 4). Analytical and Bioanalytical Chemistry.
2025 article
Feasibility of IR‐MALDESI Mass Spectrometry Imaging of PFAS
Martin, A., Joignant, A. N., Farrell, M., Planchart, A., & Muddiman, D. C. (2025, January 14). Journal of Mass Spectrometry, Vol. 60.
2025 article
Glycosaminoglycan Mass Spectrometry Imaging by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization
Palomino, T. V., & Muddiman, D. C. (2025, March 4). Journal of the American Society for Mass Spectrometry, Vol. 3.
2025 article
Mechanistic Insights into Visible-Light-Induced ATRA Reactions Powered by the Symbiotic Relationship between Cu(II)/Cu(I) Phenanthroline Complexes
Arteta, S., Deegbey, M., Durand, N., Kibbe, R., Floß, J., Barth, A. T., … Castellano, F. N. (2025, August 26). ACS Catalysis, Vol. 8.
2025 article
Mitochondrial Preparation from Microglia for Glycan Analysis
Madabhushi, M., Palomino, T. V., Patil, M. H., Muddiman, D. C., Tyrrell, D. J., & Samal, J. (2025, May 30). Journal of Visualized Experiments, Vol. 5.
2025 article
Native mass spectrometry enabled by infrared matrix-assisted laser desorption electrospray ionization for rapid measurement of protein-ligand biophysical parameters
Adepoju, A. A., Ghiladi, R. A., & Muddiman, D. C. (2025, November 14). Analytical and Bioanalytical Chemistry.
2025 article
Part A: Implementing an Analyte Panel and Sampling Protocol for Quality Control in Mass Spectrometry Imaging
Mills, Q., Kibbe, R. R., Sohn, A. L., Percy, A. J., Backiel, K., & Muddiman, D. C. (2025, February 17). Rapid Communications in Mass Spectrometry, Vol. 39.
2025 article
Part B: SLICE‐MSI—A Machine Learning Interface for System Suitability Testing of Mass Spectrometry Imaging Platforms
Kibbe, R. R., Mills, Q., Sohn, A. L., & Muddiman, D. C. (2025, February 17). Rapid Communications in Mass Spectrometry, Vol. 39.
2025 article
Progress in monitoring molecular, cellular and metabolic dynamics using mass spectrometry imaging
Gamcsik, M. P., Bruce, E. R., & Muddiman, D. C. (2025, October 30). Bioanalysis.
2025 article
Signal enhancement of lipids and glycans using ammonium fluoride for IR-MALDESI mass spectrometry imaging
Eisenberg, S. M., Dunnavant, A. R., Palomino, T. V., Muddiman, D. C., Eisenberg, S. M., Dunnavant, A. R., … Muddiman, D. C. (2025, November 18). Analytical and Bioanalytical Chemistry.
2025 article
Temperature Programming Secondary Electrospray Ionization (TP-SESI): A Novel Approach for Mass Spectrometry Analysis of Plant Volatile Organic Compounds
Ashbacher, S. M., & Muddiman, D. C. (2025, July 30). Analytical Chemistry, Vol. 7.
2025 article
Three-dimensional mass spectrometry imaging (3D MSI): incorporating top-hat IR-MALDESI and automatic z-axis correction
Sohn, A. L., Witherspoon, J. G., Smart, R. C., & Muddiman, D. C. (2025, February 3). Analytical and Bioanalytical Chemistry, Vol. 2.
2025 article
Topographic imaging with automatic z-axis correction of Brassica oleracea var. viridis leaves by IR-MALDESI mass spectrometry imaging
Mills, Q., Ashbacher, S. M., Sohn, A. L., & Muddiman, D. C. (2025, March 15). Analytical and Bioanalytical Chemistry, Vol. 3.
2025 article
Unraveling the molecular dynamics of wound healing: integrating spatially resolved lipidomics and temporally resolved proteomics
Bai, H., Arnedo, A. S., Liu, Y., Segura, T., & Muddiman, D. (2025, April 24). Analytical and Bioanalytical Chemistry, Vol. 4.
2024 article
A statistical approach to system suitability testing for mass spectrometry imaging
Sohn, A. L., Kibbe, R. R., Dioli, O. E., Hector, E. C., Bai, H., Garrard, K. P., & Muddiman, D. C. (2024, March 8). Rapid Communications in Mass Spectrometry.
2024 article
Absolute Quantification of Glutathione Using Top‐Hat Optics for IR‐MALDESI Mass Spectrometry Imaging
Bruce, E. R., Kibbe, R. R., Hector, E. C., & Muddiman, D. C. (2024, September 18). Journal of Mass Spectrometry, Vol. 59.
2024 article
Improved detection in untargeted lipidomics through silver‐doped infrared matrix‐assisted laser desorption electrospray ionization
Eisenberg, S. M., & Muddiman, D. C. (2024, May 30). Rapid Communications in Mass Spectrometry, Vol. 38.
2024 article
In-depth characterization of N-glycosylation and sialic acid content in fetal and adult fibrinogen
Palomino, T. V., Sheridan, A., Muddiman, D. C., & Brown, A. C. (2024, November 1). Research and Practice in Thrombosis and Haemostasis, Vol. 8.
2024 journal article
Incorporation of Three Different Optical Trains into the IR-MALDESI Mass Spectrometry Imaging Platform to Characterize Artemisia annua
Journal of the American Society for Mass Spectrometry, 35(6), 1245–1252.
Contributors: S. Ashbacher n , Q. Mills n, A. Sohn n, D. Xie n & n
2024 article
Leveraging Supervised Machine Learning Algorithms for System Suitability Testing of Mass Spectrometry Imaging Platforms
Kibbe, R. R., Sohn, A. L., & Muddiman, D. C. (2024, September 3). Journal of Proteome Research, Vol. 9.
2024 article
Mass spectrometry imaging of N‐linked glycans: Fundamentals and recent advances
Palomino, T. V., & Muddiman, D. C. (2024, June 27). Mass Spectrometry Reviews, Vol. 6.
2024 article
Obtaining 20 μm Spatial Resolution with a 2940 nm Laser by IR-MALDESI Mass Spectrometry Imaging
Eisenberg, S. M., Joignant, A. N., Knizner, K. T., Manni, J. G., & Muddiman, D. C. (2024, November 8). Journal of the American Society for Mass Spectrometry, Vol. 11.
2024 article
Optimizing neurotransmitter pathway detection by IR-MALDESI-MSI in mouse brain
Wang, M. F., Ouyang, Y., Segura, T., & Muddiman, D. C. (2024, June 1). Analytical and Bioanalytical Chemistry, Vol. 6.
2024 article
Quantitative mass spectrometry imaging (qMSI): A tutorial
Kibbe, R. R., & Muddiman, D. C. (2024, March 15). Journal of Mass Spectrometry, Vol. 59.
2024 article
Quantitative sampling by IR-MALDESI is not susceptible to tissue heterogeneity in a multi-organ model
Joignant, A. N., Hector, E. C., Barnes, M. M., Kullman, S. W., & Muddiman, D. C. (2024, November 13). Analytical and Bioanalytical Chemistry, Vol. 11.
2024 article
RCM protocols: improving reproducibility in the field of mass spectrometry
Holman, S. W., Langley, G. J., Muddiman, D. C., & Novak‐Mitchell, C. (2024, January 1). Rapid Communications in Mass Spectrometry, Vol. 1.
2024 article
Rigorous scientific inquiry guided by creativity, curiosity and support: One of the last Renaissance scientists of our time
Muddiman, D. C., & Hittle, L. R. (2024, July 9). Analytical and Bioanalytical Chemistry, Vol. 7.
2024 article
Turning the Tide Toward Equity: Gender Disparities in Scientific Publishing in Biomedical Mass Spectrometry
Sahoo, A., Chie, C., Muddiman, D. C., & Samal, J. (2024, September 25). GEN Biotechnology, Vol. 9.
2023 article
Achieving Cross-Ring Fragmentation of N-Linked Glycans by IR-MALDESI
Palomino, T. V., & Muddiman, D. C. (2023, December 19). Journal of the American Society for Mass Spectrometry, Vol. 35, pp. 166–171.
2023 article
Achieving Sub-Parts-per-Million Mass Measurement Accuracy on an Orbitrap Mass Spectrometry Imaging Platform without Automatic Gain Control
Kibbe, R. R., & Muddiman, D. C. (2023, April 25). Journal of the American Society for Mass Spectrometry.
2023 article
Automatic z-Axis Correction for IR-MALDESI Mass Spectrometry Imaging of Uneven Surfaces
Knizner, K. T., Garrard, K. P., & Muddiman, D. C. (2023, June 12). Journal of the American Society for Mass Spectrometry, Vol. 6.
2023 article
Comparative analysis of sucrose-embedding for whole-body zebrafish MSI by IR-MALDESI
Wang, M. F., Ritter, M. M., Kullman, S. W., & Muddiman, D. C. (2023, August 29). Analytical and Bioanalytical Chemistry, Vol. 8.
2023 article
Correction to “On the importance of color in mass spectrometry imaging”
Muddiman, D. C. (2023, April 26). Correction to “On the importance of color in mass spectrometry imaging.” Journal of Mass Spectrometry, Vol. 58.
2023 article
Correction to “Time of acquisition and high spatial resolution mass spectrometry imaging”
Muddiman, D. C. (2023, April 26). Correction to “Time of acquisition and high spatial resolution mass spectrometry imaging.” Journal of Mass Spectrometry.
2023 article
Development of an object-based image analysis tool for mass spectrometry imaging ion classification
Eisenberg, S. M., Knizner, K. T., & Muddiman, D. C. (2023, May 24). Analytical and Bioanalytical Chemistry, Vol. 5.
2023 article
Enhanced Detection of Charged N-Glycans in the Brain by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometric Imaging
Samal, J., Palomino, T. V., Chen, J., Muddiman, D. C., & Segura, T. (2023, July 10). Analytical Chemistry, Vol. 95, pp. 10913–10920.
2023 article
Evaluating the optimal tissue thickness for mass spectrometry imaging using infrared matrix‐assisted laser desorption electrospray ionization
Joignant, A. N., Knizner, K. T., & Muddiman, D. C. (2023, September 18). Rapid Communications in Mass Spectrometry, Vol. 37.
2023 article
Impact of wavelength and spot size on laser depth of focus: Considerations for mass spectrometry imaging of non‐flat samples
Joignant, A. N., & Muddiman, D. C. (2023, February 23). Journal of Mass Spectrometry, Vol. 3.
2023 article
Lipidomic Analysis of Mouse Brain to Evaluate the Efficacy and Preservation of Different Tissue Preparatory Techniques by IR-MALDESI-MSI
Wang, M. F., Sohn, A. L., Samal, J., Erning, K., Segura, T., & Muddiman, D. C. (2023, March 29). Journal of the American Society for Mass Spectrometry, Vol. 3.
2023 article
Maximized Spatial Information and Minimized Acquisition Time of Top-Hat IR-MALDESI-MSI of Zebrafish Using Nested Regions of Interest (nROIs)
Joignant, A. N., Ritter, M. M., Knizner, K. T., Garrard, K. P., Kullman, S. W., & Muddiman, D. C. (2023, August 1). Journal of the American Society for Mass Spectrometry, Vol. 8.
2023 article
Metabolite Annotation Confidence Score (MACS): A Novel MSI Identification Scoring Tool
Eisenberg, S. M., Knizner, K. T., & Muddiman, D. C. (2023, August 22). Journal of the American Society for Mass Spectrometry, Vol. 8.
2023 article
Predicting Sialic Acid Content of N-Linked Glycans Using the Isotopic Pattern of Chlorine
Palomino, T. V., & Muddiman, D. C. (2023, June 8). Journal of the American Society for Mass Spectrometry, Vol. 6.
2023 article
Prototyping an ionization source for non‐engineers
Knizner, K. T., Eisenberg, S. M., & Muddiman, D. C. (2023, December 21). Journal of Mass Spectrometry, Vol. 59.
2023 article
Quasi‐continuous infrared matrix‐assisted laser desorption electrospray ionization source coupled to a quadrupole time‐of‐flight mass spectrometer for direct analysis from well plates
Arciniega, C., Garrard, K. P., Guymon, J. P., Manni, J. G., Apffel, A., Fjeldsted, J. C., & Muddiman, D. C. (2023, January 1). Journal of Mass Spectrometry, Vol. 58.
2023 article
SMART: A data reporting standard for mass spectrometry imaging
Sohn, A. L., Joignant, A. N., Cologna, S. M., Prentice, B. M., & Muddiman, D. C. (2023, January 22). Journal of Mass Spectrometry, Vol. 58.
2022 article
An adaptive teosinte mexicana introgression modulates phosphatidylcholine levels and is associated with maize flowering time
Barnes, A. C., Rodríguez-Zapata, F., Juárez-Núñez, K. A., Gates, D. J., Janzen, G. M., Kur, A., … Rellán-Álvarez, R. (2022, June 30). Proceedings of the National Academy of Sciences, Vol. 7.
Contributors: P. Thompson n
2022 article
Developing transmission mode for infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging
Joignant, A. N., Bai, H., Guymon, J. P., Garrard, K. P., Pankow, M., & Muddiman, D. C. (2022, September 3). Rapid Communications in Mass Spectrometry, Vol. 11.
2022 article
Development and validation of a high resolving power absolute quantitative per‐ and polyfluoroalkyl substances method incorporating Skyline data processing
Enders, J. R., Weed, R. A., Griffith, E. H., & Muddiman, D. C. (2022, March 11). Rapid Communications in Mass Spectrometry, Vol. 6.
2022 journal article
Glycerate from intestinal fructose metabolism induces islet cell damage and glucose intolerance
Cell Metabolism, 34(7), 1042–1053.e6.
2022 article
Highlighting Functional Mass Spectrometry Imaging Methods in Bioanalysis
Mellinger, A. L., Muddiman, D. C., & Gamcsik, M. P. (2022, June 24). Journal of Proteome Research, Vol. 6.
2022 article
Improved spatial resolution of infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging using a reflective objective
Joignant, A. N., Bai, H., Manni, J. G., & Muddiman, D. C. (2022, September 4). Rapid Communications in Mass Spectrometry, Vol. 12.
2022 article
Interrogating the Metabolomic Profile of Amyotrophic Lateral Sclerosis in the Post-Mortem Human Brain by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Mass Spectrometry Imaging (MSI)
Sohn, A. L., Ping, L., Glass, J. D., Seyfried, N. T., Hector, E. C., & Muddiman, D. C. (2022, November 10). Metabolites, Vol. 12.
2022 article
Mapping glycine uptake and its metabolic conversion to glutathione in mouse mammary tumors using functional mass spectrometry imaging
Mellinger, A. L., Kibbe, R. R., Rabbani, Z. N., Meritet, D., Muddiman, D. C., & Gamcsik, M. P. (2022, November 1). Free Radical Biology and Medicine, Vol. 193, pp. 677–684.
2022 article
Next-Generation Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Source for Mass Spectrometry Imaging and High-Throughput Screening
Knizner, K. T., Guymon, J. P., Garrard, K. P., Bouvrée, G., Manni, J., Hauschild, J.-P., … Muddiman, D. C. (2022, September 29). Journal of the American Society for Mass Spectrometry, Vol. 9.
2022 article
Normalization techniques for high‐throughput screening by infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry
Knizner, K. T., Bagley, M. C., Pu, F., Elsen, N. L., Williams, J. D., & Muddiman, D. C. (2022, May 28). Journal of Mass Spectrometry, Vol. 6.
2022 article
Novel matrix strategies for improved ionization and spatial resolution using IR‐MALDESI mass spectrometry imaging
Kibbe, R. R., Mellinger, A. L., & Muddiman, D. C. (2022, July 19). Journal of Mass Spectrometry, Vol. 8.
2022 article
On the importance of color in mass spectrometry imaging
Knizner, K. T., Kibbe, R. R., Garrard, K. P., Nuñez, J. R., Anderton, C. R., & Muddiman, D. C. (2022, November 22). Journal of Mass Spectrometry, Vol. 57.
2022 article
Optimized C-Trap Timing of an Orbitrap 240 Mass Spectrometer for High-Throughput Screening and Native MS by IR-MALDESI
Knizner, K. T., Bagley, M. C., Garrard, K. P., Hauschild, J.-P., Pu, F., Elsen, N. L., … Muddiman, D. C. (2022, January 24). Journal of the American Society for Mass Spectrometry, Vol. 2.
2022 article
Phosphorylation-dependent proteome of Marcks in ependyma during aging and behavioral homeostasis in the mouse forebrain
Muthusamy, N., Williams, T. I., Ryan, O. T., Brudvig, J. J., Adler, K. B., Weimer, J. M., … Ghashghaei, H. T. (2022, January 24). GeroScience, Vol. 1, pp. 2077–2094.
Contributors: N. Muthusamy n, T. Williams n , R. O’Toole *, J. Brudvig *, K. Adler n, J. Weimer *, n , H. Ghashghaei n
2022 article
Transforming a Mid-infrared Laser Profile from Gaussian to a Top-Hat with a Diffractive Optical Element for Mass Spectrometry Imaging
Bai, H., Manni, J. G., & Muddiman, D. C. (2022, December 21). Journal of the American Society for Mass Spectrometry, Vol. 34, pp. 10–16.
2021 article
In situ detection of fatty acid C=C positional isomers by coupling on‐tissue mCPBA epoxidation with infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry
Tu, A., Garrard, K. P., Said, N., & Muddiman, D. C. (2021, May 4). Rapid Communications in Mass Spectrometry, Vol. 7.
2021 article
Enhancing Metabolomic Coverage in Positive Ionization Mode Using Dicationic Reagents by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization
Muddiman, D. C. (2021, November 29). Metabolites, Vol. 12.
2021 article
Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa
Lin, C.-Y., Sun, Y., Song, J., Chen, H.-C., Shi, R., Yang, C., … Chiang, V. L. (2021, October 6). Frontiers in Plant Science, Vol. 12.
Contributors: C. Lin n, H. Chen n, R. Shi n, C. Yang n, J. Liu n, S. Tunlaya-Anukit n, Y. Lin n, R. Sederoff n
2021 article
GlycoHunter: An Open-Source Software for the Detection and Relative Quantification of INLIGHT-Labeled N-Linked Glycans
Kalmar, J. G., Garrard, K. P., & Muddiman, D. C. (2021, January 8). Journal of Proteome Research, Vol. 20, pp. 1855–1863.
2021 article
Investigations of β‐carotene radical cation formation in infrared matrix‐assisted laser desorption electrospray ionization (IR‐MALDESI)
Bagley, M. C., & Muddiman, D. C. (2021, May 26). Rapid Communications in Mass Spectrometry.
2021 article
Mass Spectrometry Imaging of N-Linked Glycans in a Formalin-Fixed Paraffin-Embedded Human Prostate by Infrared Matrix-Assisted Laser Desorption Electrospray Ionization
Pace, C. L., Angel, P. M., Drake, R. R., & Muddiman, D. C. (2021, December 3). Journal of Proteome Research, Vol. 1.
2021 article
Michael S. Bereman (1981–2021)
Muddiman, D. C., & MacCoss, M. J. (2021, May 5). Journal of the American Society for Mass Spectrometry, Vol. 5.
2021 article
Multimodal Mass Spectrometry Imaging of Rat Brain Using IR-MALDESI and NanoPOTS-LC-MS/MS
Pace, C. L., Simmons, J., Kelly, R. T., & Muddiman, D. C. (2021, December 3). Journal of Proteome Research, Vol. 3.
2021 article
Multiple Infusion Start Time Mass Spectrometry Imaging of Dynamic SIL-Glutathione Biosynthesis Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization
Mellinger, A. L., Garrard, K. P., Khodjaniyazova, S., Rabbani, Z. N., Gamcsik, M. P., & Muddiman, D. C. (2021, November 22). Journal of Proteome Research, Vol. 3.
2021 article
Spatially resolved metabolomic characterization of muscle invasive bladder cancer by mass spectrometry imaging
Tu, A., Said, N., & Muddiman, D. C. (2021, July 21). Metabolomics, Vol. 8.
2021 article
The development and application of matrix assisted laser desorption electrospray ionization: The teenage years
Bagley, M. C., Garrard, K. P., & Muddiman, D. C. (2021, May 24). Mass Spectrometry Reviews, Vol. 5.
2021 article
Three-dimensional (3D) imaging of lipids in skin tissues with infrared matrix-assisted laser desorption electrospray ionization (MALDESI) mass spectrometry
Bai, H., Linder, K. E., & Muddiman, D. C. (2021, January 2). Analytical and Bioanalytical Chemistry.
2021 article
Understanding the electrospray ionization response factors of per- and poly-fluoroalkyl substances (PFAS)
Enders, J. R., O’Neill, G. M., Whitten, J. L., & Muddiman, D. C. (2021, July 21). Analytical and Bioanalytical Chemistry, Vol. 7.
2021 article
Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT™ derivatized N-linked glycans in biological samples
Butler, K. E., Kalmar, J. G., Muddiman, D. C., & Baker, E. S. (2021, August 4). Analytical and Bioanalytical Chemistry, Vol. 8.
2020 article
3D Imaging and metabolomic profiling reveal higher neuroactive kavalactone contents in lateral roots and crown root peels of Piper methysticum (kava)
Jaiswal, Y. S., Yerke, A. M., Bagley, M. C., Ekelöf, M., Weber, D., Haddad, D., … Williams, L. L. (2020, September 1). GigaScience, Vol. 9.
2020 journal article
A Versatile Platform for Mass Spectrometry Imaging of Arbitrary Spatial Patterns
Journal of the American Society for Mass Spectrometry, 31(12), 2547–2552.
2020 article
Analysis of neurotransmitters in rat placenta exposed to flame retardants using IR-MALDESI mass spectrometry imaging
Pace, C. L., Horman, B., Patisaul, H., & Muddiman, D. C. (2020, April 16). Analytical and Bioanalytical Chemistry, Vol. 412, pp. 3745–3752.
2020 article
Comparative Proteomic Analysis of Wild Type and Mutant Lacking an SCF E3 Ligase F-Box Protein in Magnaporthe oryzae
Kalmar, J. G., Oh, Y., Dean, R. A., & Muddiman, D. C. (2020, July 21). Journal of Proteome Research, Vol. 19, pp. 3761–3768.
2020 journal article
Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications
Journal of the American Society for Mass Spectrometry, 31(3), 642–650.
2020 article
Determination of Optimal Electrospray Parameters for Lipidomics in Infrared-Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry Imaging
Bagley, M. C., Ekelöf, M., & Muddiman, D. C. (2020, January 10). Journal of the American Society for Mass Spectrometry, Vol. 31, pp. 319–325.
2020 article
Direct Analysis of Native N-Linked Glycans by IR-MALDESI
Pace, C. L., & Muddiman, D. C. (2020, June 30). Journal of the American Society for Mass Spectrometry, Vol. 31, pp. 1759–1762.
2020 article
Effects of Prenatal Exposure to a Mixture of Organophosphate Flame Retardants on Placental Gene Expression and Serotonergic Innervation in the Fetal Rat Brain
Rock, K. D., Armour, G. S., Horman, B., Phillips, A., Ruis, M., Stewart, A. K., … Patisaul, H. B. (2020, March 30). Toxicological Sciences, Vol. 176, pp. 203–223.
2020 article
Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™
Kalmar, J. G., Butler, K. E., Baker, E. S., & Muddiman, D. C. (2020, August 26). Analytical and Bioanalytical Chemistry.
2020 article
Infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) mass spectrometry imaging analysis of endogenous metabolites in cherry tomatoes
Bagley, M. C., Pace, C. L., Ekelöf, M., & Muddiman, D. C. (2020, January 1). The Analyst, Vol. 145, pp. 5516–5523.
2020 article
Lipidomic profiling of single mammalian cells by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
Tu, A., & Muddiman, D. C. (2020, September 29). Analytical and Bioanalytical Chemistry.
2020 article
Metabolite Profiling Reveals Predictive Biomarkers and the Absence of β-Methyl Amino-l-alanine in Plasma from Individuals Diagnosed with Amyotrophic Lateral Sclerosis
Bereman, M. S., Kirkwood, K. I., Sabaretnam, T., Furlong, S., Rowe, D. B., Guillemin, G. J., … Muddiman, D. C. (2020, May 18). Journal of Proteome Research, Vol. 19, pp. 3276–3285.
2020 journal article
Methods for Cryosectioning and Mass Spectrometry Imaging of Whole-Body Zebrafish
Journal of the American Society for Mass Spectrometry, 31(4), 768–772.
2019 journal article
Artemisinin Biosynthesis in Non-glandular Trichome Cells of Artemisia annua
Molecular Plant, 12(5), 704–714.
Contributors: R. Judd n, M. Bagley n, M. Li n, Y. Zhu n, C. Lei n, S. Yuzuak n, M. Ekelöf n, G. Pu n
2019 journal article
Development of a relative quantification method for infrared matrix‐assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings
Rapid Communications in Mass Spectrometry, 34(6).
2019 article
Heterogeneous antiretroviral drug distribution and HIV/SHIV detection in the gut of three species
Thompson, C. G., Rosen, E. P., Prince, H. M. A., White, N., Sykes, C., Cruz, G., … Kashuba, A. D. M. (2019, July 3). Science Translational Medicine, Vol. 11.
2019 article
Internal Energy Deposition in Infrared Matrix-Assisted Laser Desorption Electrospray Ionization With and Without the Use of Ice as a Matrix
Tu, A., & Muddiman, D. C. (2019, September 9). Journal of the American Society for Mass Spectrometry, Vol. 30, pp. 2380–2391.
2019 article
Investigating host-pathogen meta-metabolic interactions of Magnaporthe oryzae infected barley using infrared matrix-assisted laser desorption electrospray ionization mass spectrometry
Kalmar, J. G., Oh, Y., Dean, R. A., & Muddiman, D. C. (2019, November 23). Analytical and Bioanalytical Chemistry, Vol. 412, pp. 139–147.
2019 article
Label‐Free Quantitative Proteomics of Enriched Nuclei from Sugarcane (Saccharum ssp) Stems in Response to Drought Stress
Salvato, F., Loziuk, P., Kiyota, E., Daneluzzi, G. S., Araújo, P., Muddiman, D. C., & Mazzafera, P. (2019, June 7). PROTEOMICS.
2019 article
Mass spectrometry imaging (MSI) of fresh bones using infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
Khodjaniyazova, S., Hanne, N. J., Cole, J. H., & Muddiman, D. C. (2019, January 1). Analytical Methods, Vol. 11, pp. 5929–5938.
2019 journal article
NIST Interlaboratory Study on Glycosylation Analysis of Monoclonal Antibodies: Comparison of Results from Diverse Analytical Methods
Molecular & Cellular Proteomics, 19(1), 11–30.
2019 article
Quantitative proteomic analysis of tomato genotypes with differential cadmium tolerance
Borges, K. L. R., Salvato, F., Loziuk, P. L., Muddiman, D. C., & Azevedo, R. A. (2019, July 5). Environmental Science and Pollution Research, Vol. 26, pp. 26039–26051.
2019 article
Systematic evaluation of repeatability of IR-MALDESI-MS and normalization strategies for correcting the analytical variation and improving image quality
Tu, A., & Muddiman, D. C. (2019, June 25). Analytical and Bioanalytical Chemistry, Vol. 411, pp. 5729–5743.
2019 article
Three-Dimensional Imaging with Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry
Bai, H., Khodjaniyazova, S., Garrard, K. P., & Muddiman, D. C. (2019, December 30). Journal of the American Society for Mass Spectrometry, Vol. 31, pp. 292–297.
2018 article
CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa
Yan, X., Liu, J., Kim, H., Liu, B., Huang, X., Yang, Z., … Chiang, V. L. (2018, October 2). New Phytologist, Vol. 222, pp. 244–260.
2018 article
A novel integrated strategy for the detection and quantification of the neurotoxin β-N-methylamino-l-alanine in environmental samples
Beri, J., Kirkwood, K. I., Muddiman, D. C., & Bereman, M. S. (2018, February 17). Analytical and Bioanalytical Chemistry, Vol. 410, pp. 2597–2605.
2018 article
Characterization of a novel miniaturized burst-mode infrared laser system for IR-MALDESI mass spectrometry imaging
Ekelöf, M., Manni, J., Nazari, M., Bokhart, M., & Muddiman, D. C. (2018, February 17). Analytical and Bioanalytical Chemistry, Vol. 410, pp. 2395–2402.
2018 article
Discovery and quantification of bioactive peptides in fermented cucumber by direct analysis IR-MALDESI mass spectrometry and LC-QQQ-MS
Fideler, J., Johanningsmeier, S. D., Ekelöf, M., & Muddiman, D. C. (2018, July 31). Food Chemistry, Vol. 271, pp. 715–723.
2018 article
Discriminating normal regions within cancerous hen ovarian tissue using multivariate hyperspectral image analysis
Lakeh, M. A., Tu, A., Muddiman, D. C., & Abdollahi, H. (2018, November 23). Rapid Communications in Mass Spectrometry, Vol. 33, pp. 381–391.
2018 journal article
Evaluation of Digital Image Recognition Methods for Mass Spectrometry Imaging Data Analysis
Journal of The American Society for Mass Spectrometry, 29(12), 2467–2470.
Contributors: M. Ekelöf n, K. Garrard n, R. Judd n, E. Rosen*, D. Xie n , A. Kashuba *, n
2018 article
IR-MALDESI mass spectrometry imaging of underivatized neurotransmitters in brain tissue of rats exposed to tetrabromobisphenol A
Bagley, M. C., Ekelöf, M., Rock, K., Patisaul, H., & Muddiman, D. C. (2018, October 13). Analytical and Bioanalytical Chemistry, Vol. 410, pp. 7979–7986.
2018 journal article
Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis
Nature Communications, 9(1), 1579.
Contributors: J. Wang n , M. Matthews n, C. Williams n , R. Shi n, C. Yang n, S. Tunlaya-Anukit n, H. Chen n, Q. Li *
2018 journal article
Jürgen H. Gross: Mass spectrometry: a textbook, 3rd ed.
Analytical and Bioanalytical Chemistry, 410(8), 2051–2052.
2018 article
Quantitative mass spectrometry imaging of glutathione in healthy and cancerous hen ovarian tissue sections by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
Nazari, M., Bokhart, M. T., Loziuk, P. L., & Muddiman, D. C. (2018, January 1). The Analyst, Vol. 143, pp. 654–661.
2017 journal article
Characterization of the Spectral Accuracy of an Orbitrap Mass Analyzer Using Isotope Ratio Mass Spectrometry
Analytical Chemistry, 90(3), 1897–1906.
2017 journal article
Climate projections of spatial variations in coastal storm surges along the Gulf of Mexico and U.S. east coast
Journal of Ocean University of China, 16(1), 1–7.
2017 journal article
Comparative proteomic analysis between nitrogen supplemented and starved conditions in Magnaporthe oryzae
Proteome Science, 15(1).
2017 journal article
Cover Image
Rapid Communications in Mass Spectrometry, 31(22), i-i.
2017 article
DRILL: An Electrospray Ionization-Mass Spectrometry Interface for Improved Sensitivity via Inertial Droplet Sorting and Electrohydrodynamic Focusing in a Swirling Flow
Kottke, P. A., Lee, J. Y., Jonke, A. P., Seneviratne, C. A., Hecht, E. S., Muddiman, D. C., … Fedorov, A. G. (2017, June 14). Analytical Chemistry, Vol. 89, pp. 8981–8987.
2017 article
Demonstration of hydrazide tagging for O-glycans and a central composite design of experiments optimization using the INLIGHT™ reagent
King, S. R., Hecht, E. S., & Muddiman, D. C. (2017, December 26). Analytical and Bioanalytical Chemistry, Vol. 410, pp. 1409–1415.
2017 journal article
Direct analysis of terpenes from biological buffer systems using SESI and IR-MALDESI
Analytical and Bioanalytical Chemistry, 410(3), 953–962.
2017 article
Direct screening of enzyme activity using infrared matrix‐assisted laser desorption electrospray ionization
Nazari, M., Ekelöf, M., Khodjaniyazova, S., Elsen, N. L., Williams, J. D., & Muddiman, D. C. (2017, August 25). Rapid Communications in Mass Spectrometry, Vol. 31, pp. 1868–1874.
2017 journal article
IR-MALDESI Mass Spectrometry Imaging at 50 Micron Spatial Resolution
Journal of The American Society for Mass Spectrometry, 28(10), 2099–2107.
2017 article
IR-MALDESI method optimization based on time-resolved measurement of ion yields
Ekelöf, M., & Muddiman, D. C. (2017, August 29). Analytical and Bioanalytical Chemistry, Vol. 410, pp. 963–970.
2017 article
Imaging antiretroviral distribution within gastrointestinal tissues across pre-clinical species: implications for hiv eradication
Clinical Pharmacology & Therapeutics, Vol. 101, pp. S17–17.
2017 journal article
MSiReader v1.0: Evolving Open-Source Mass Spectrometry Imaging Software for Targeted and Untargeted Analyses
Journal of The American Society for Mass Spectrometry, 29(1), 8–16.
2017 article
Mass spectrometric detection of chlorophyll a and the tetrapyrrole secondary metabolite tolyporphin A in the filamentous cyanobacterium HT-58-2. Approaches to high-throughput screening of intact cyanobacteria
Zhang, Y., Zhang, R., Nazari, M., Bagley, M. C., Miller, E. S., Williams, P. G., … Lindsey, J. S. (2017, November 1). Journal of Porphyrins and Phthalocyanines, Vol. 21, pp. 759–768.
2017 article
Perfluorinated alcohol induced coacervates as extraction media for proteomic analysis
McCord, J. P., Muddiman, D. C., & Khaledi, M. G. (2017, June 12). Journal of Chromatography A, Vol. 1523, pp. 293–299.
2017 article
The PeptideAtlas of the Domestic Laying Hen
McCord, J., Sun, Z., Deutsch, E. W., Moritz, R. L., & Muddiman, D. C. (2017, February 7). Journal of Proteome Research, Vol. 16, pp. 1352–1363.
2017 journal article
The scope of Analytical and Bioanalytical Chemistry (ABC)
Analytical and Bioanalytical Chemistry, 410(3), 649–650.
2017 article
Xylose Migration During Tandem Mass Spectrometry of N-Linked Glycans
Hecht, E. S., Loziuk, P. L., & Muddiman, D. C. (2017, January 26). Journal of the American Society for Mass Spectrometry, Vol. 28, pp. 729–732.
2016 journal article
A Quantitative Glycomics and Proteomics Combined Purification Strategy
Journal of Visualized Experiments, 3(109).
2016 journal article
A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa
Tree Genetics & Genomes, 12(2).
2016 article
Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease
Heaven, M. R., Flint, D., Randall, S. M., Sosunov, A. A., Wilson, L., Barnes, S., … Brenner, M. (2016, May 19). Journal of Proteome Research, Vol. 15, pp. 2265–2282.
2016 journal article
Direct Analysis of Triterpenes from High-Salt Fermented Cucumbers Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI)
Journal of The American Society for Mass Spectrometry, 28(2), 370–375.
2016 article
Enhanced Lipidome Coverage in Shotgun Analyses by using Gas-Phase Fractionation
Nazari, M., & Muddiman, D. C. (2016, August 25). Journal of the American Society for Mass Spectrometry, Vol. 27, pp. 1735–1744.
2016 article
Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein
Parker, J., Oh, Y., Moazami, Y., Pierce, J. G., Loziuk, P. L., Dean, R. A., & Muddiman, D. C. (2016, August 24). Analytical Biochemistry, Vol. 512, pp. 114–119.
2016 article
Identification of Epigenetic Factor Proteins Expressed in Human Embryonic Stem Cell-Derived Trophoblasts and in Human Placental Trophoblasts
Sarkar, P., Mischler, A., Randall, S. M., Collier, T. S., Dorman, K. F., Boggess, K. A., … Rao, B. M. (2016, July 5). Journal of Proteome Research, Vol. 15, pp. 2433–2444.
Contributors: P. Sarkar n, A. Mischler n, S. Randall n, T. Collier n, K. Dorman*, K. Boggess*, n , B. Rao n
2016 article
Infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging analysis of biospecimens
Bokhart, M. T., & Muddiman, D. C. (2016, January 1). The Analyst, Vol. 141, pp. 5236–5245.
2016 article
N-linked glycosite profiling and use of Skyline as a platform for characterization and relative quantification of glycans in differentiating xylem of Populus trichocarpa
Loziuk, P. L., Hecht, E. S., & Muddiman, D. C. (2016, August 4). Analytical and Bioanalytical Chemistry, Vol. 409, pp. 487–497.
2016 article
Optimizing Mass Spectrometry Analyses: A Tailored Review on the Utility of Design of Experiments
Hecht, E. S., Oberg, A. L., & Muddiman, D. C. (2016, March 7). Journal of the American Society for Mass Spectrometry, Vol. 27, pp. 767–785.
2016 article
Recent advances in glycomics, glycoproteomics and allied topics
Mechref, Y., & Muddiman, D. C. (2016, December 8). Analytical and Bioanalytical Chemistry, Vol. 409, pp. 355–357.
2016 journal article
TransOmic analysis of forebrain sections in Sp2 conditional knockout embryonic mice using IR-MALDESI imaging of lipids and LC-MS/MS label-free proteomics
Analytical and Bioanalytical Chemistry, 408(13), 3453–3474.
2016 journal article
Whole-body Mass Spectrometry Imaging by Infrared Matrix-assisted Laser Desorption Electrospray Ionization (IR-MALDESI)
Journal of Visualized Experiments, 3(109).
2015 article
4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid:Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa
Lin, C.-Y., Wang, J. P., Li, Q., Chen, H.-C., Liu, J., Loziuk, P., … Chiang, V. L. (2015, January 1). Molecular Plant, Vol. 8, pp. 176–187.
2015 article
Activin/Nodal Signaling Switches the Terminal Fate of Human Embryonic Stem Cell-derived Trophoblasts
Sarkar, P., Randall, S. M., Collier, T. S., Nero, A., Russell, T. A., Muddiman, D. C., & Rao, B. M. (2015, February 11). Journal of Biological Chemistry, Vol. 290, pp. 8834–8848.
Contributors: P. Sarkar*, S. Randall*, T. Collier *, A. Nero, T. Russell n, * , B. Rao*
2015 article
Analysis of Antiretrovirals in Single Hair Strands for Evaluation of Drug Adherence with Infrared-Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry Imaging
Rosen, E. P., Thompson, C. G., Bokhart, M. T., Prince, H. M. A., Sykes, C., Muddiman, D. C., & Kashuba, A. D. M. (2015, December 21). Analytical Chemistry, Vol. 88, pp. 1336–1344.
2015 article
Definitive Screening Design Optimization of Mass Spectrometry Parameters for Sensitive Comparison of Filter and Solid Phase Extraction Purified, INLIGHT PlasmaN-Glycans
Hecht, E. S., McCord, J. P., & Muddiman, D. C. (2015, June 18). Analytical Chemistry, Vol. 87, pp. 7305–7312.
2015 article
Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa
Loziuk, P. L., Parker, J., Li, W., Lin, C.-Y., Wang, J. P., Li, Q., … Muddiman, D. C. (2015, August 27). Journal of Proteome Research, Vol. 14, pp. 4158–4168.
Contributors: P. Loziuk n, J. Parker n, W. Li n, C. Lin n, J. Wang n , Q. Li *, R. Sederoff n, V. Chiang n, n
2015 article
Global Proteomic Analysis of Functional Compartments in Immature Avian Follicles Using Laser Microdissection Coupled to LC-MS/MS
Nepomuceno, A. I., Muddiman, D. C., & Petitte, J. N. (2015, July 27). Journal of Proteome Research, Vol. 9, pp. 3912–3923.
2015 article
In-depth LC-MS/MS analysis of the chicken ovarian cancer proteome reveals conserved and novel differentially regulated proteins in humans
Nepomuceno, A. I., Shao, H., Jing, K., Ma, Y., Petitte, J. N., Idowu, M. O., … Hawkridge, A. M. (2015, July 9). Analytical and Bioanalytical Chemistry, Vol. 9, pp. 6851–6863.
2015 article
Influence of C-Trap Ion Accumulation Time on the Detectability of Analytes in IR-MALDESI MSI
Rosen, E. P., Bokhart, M. T., Nazari, M., & Muddiman, D. C. (2015, September 28). Analytical Chemistry, Vol. 87, pp. 10483–10490.
2015 journal article
Influence of Desorption Conditions on Analyte Sensitivity and Internal Energy in Discrete Tissue or Whole Body Imaging by IR-MALDESI
Journal of The American Society for Mass Spectrometry, 26(6), 899–910.
2015 chapter
MALDESI: Fundamentals, Direct Analysis, and MS Imaging
In Advances in MALDI and Laser-Induced Soft Ionization Mass Spectrometry (pp. 169–182).
2015 journal article
Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins
PROTEOMICS, 15(15), 2678–2690.
Contributors: J. Schilling n, A. Nepomuceno n, A. Planchart n , J. Yoder n , R. Kelly n , n , H. Daniels n , N. Hiramatsu*, B. Reading n
2015 article
Mass Spectrometry Imaging Reveals Heterogeneous Efavirenz Distribution within Putative HIV Reservoirs
Thompson, C. G., Bokhart, M. T., Sykes, C., Adamson, L., Fedoriw, Y., Luciw, P. A., … Rosen, E. P. (2015, March 3). Antimicrobial Agents and Chemotherapy, Vol. 59, pp. 2944–2948.
2015 article
Mechanisms of Egg Yolk Formation and Implications on Early Life History of White Perch (Morone americana)
Schilling, J., Loziuk, P. L., Muddiman, D. C., Daniels, H. V., & Reading, B. J. (2015, November 18). PLoS ONE, Vol. 10.
2015 journal article
Phosphoproteome Analysis Links Protein Phosphorylation to Cellular Remodeling and Metabolic Adaptation during Magnaporthe oryzae Appressorium Development
Journal of Proteome Research, 14(6), 2408–2424.
2015 journal article
Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis
Proceedings of the National Academy of Sciences, 112(27), 8481–8486.
2015 article
Polarity switching mass spectrometry imaging of healthy and cancerous hen ovarian tissue sections by infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI)
Nazari, M., & Muddiman, D. C. (2015, September 21). The Analyst, Vol. 141, pp. 595–605.
2015 article
Relative Quantification and Higher-Order Modeling of the Plasma Glycan Cancer Burden Ratio in Ovarian Cancer Case-Control Samples
Hecht, E. S., Scholl, E. H., Walker, S. H., Taylor, A. D., Cliby, W. A., Motsinger-Reif, A. A., & Muddiman, D. C. (2015, September 8). Journal of Proteome Research.
2015 article
Wall modified photonic crystal fibre capillaries as porous layer open tubular columns for in-capillary micro-extraction and capillary chromatography
Kazarian, A. A., Rodriguez, E. S., Deverell, J. A., McCord, J., Muddiman, D. C., & Paull, B. (2015, October 24). Analytica Chimica Acta, Vol. 905, pp. 1–7.
2015 article
What if you could only publish 50 papers your entire career?
Muddiman, D. C. (2015, December 16). Analytical and Bioanalytical Chemistry, Vol. 408, pp. 663–664.
2014 article
Analysis of trace fibers by IR-MALDESI imaging coupled with high resolving power MS
Cochran, K. H., Barry, J. A., Robichaud, G., & Muddiman, D. C. (2014, July 31). Analytical and Bioanalytical Chemistry, Vol. 407, pp. 813–820.
2014 article
Are Presentations at ASMS Conferences Publications?
Muddiman, D. C., & Weintraub, S. T. (2014, January 2). Journal of the American Society for Mass Spectrometry, Vol. 25, pp. 301–302.
2014 article
Assessing drug and metabolite detection in liver tissue by UV-MALDI and IR-MALDESI mass spectrometry imaging coupled to FT-ICR MS
Barry, J. A., Groseclose, M. R., Robichaud, G., Castellino, S., & Muddiman, D. C. (2014, May 24). International Journal of Mass Spectrometry, Vol. 377, pp. 448–455.
2014 chapter
Atmospheric Pressure Mass Spectrometry Imaging
In R. A. Meyers (Ed.), Encyclopedia of Analytical Chemistry: Applications, Theory and Instrumentation (pp. 1–44).
Ed(s): R. Meyers
2014 journal article
C/EBPα regulates CRL4Cdt2-mediated degradation of p21 in response to UVB-induced DNA damage to control the G1/S checkpoint
Cell Cycle, 13(22), 3602–3610.
2014 article
Cellular-level mass spectrometry imaging using infrared matrix-assisted laser desorption electrospray ionization (IR-MALDESI) by oversampling
Nazari, M., & Muddiman, D. C. (2014, December 8). Analytical and Bioanalytical Chemistry, Vol. 407, pp. 2265–2271.
2014 article
Compartment Proteomics Analysis of White Perch (Morone americana) Ovary Using Support Vector Machines
Schilling, J., Nepomuceno, A., Schaff, J. E., Muddiman, D. C., Daniels, H. V., & Reading, B. J. (2014, February 4). Journal of Proteome Research, Vol. 13, pp. 1515–1526.
2014 journal article
Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa
The Plant Cell, 26(3), 894–914.
2014 article
Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry
Loziuk, P. L., Sederoff, R. R., Chiang, V. L., & Muddiman, D. C. (2014, January 1). The Analyst, Vol. 139, pp. 5439–5450.
2014 journal article
Evaluating nonpolar surface area and liquid chromatography/mass spectrometry response: an application for site occupancy measurements for enzyme intermediates in polyketide biosynthesis
Rapid Communications in Mass Spectrometry, 28(23), 2511–2522.
2014 article
Focus on Advancing High Performance Mass Spectrometry, Honoring Dr. Richard D. Smith, Recipient of the 2013 Award for a Distinguished Contribution in Mass Spectrometry
Baker, E. S., Muddiman, D. C., & Loo, J. A. (2014, October 17). Journal of the American Society for Mass Spectrometry, Vol. 25, pp. 1997–1999.
2014 article
Hierarchical Self‐Assembly of Supramolecular Hydrophobic Metallacycles into Ordered Nanostructures
Zhang, J., Marega, R., Chen, L. J., Wu, N. W., Xu, X. D., Muddiman, D. C., … Yang, H. B. (2014, August 19). Chemistry - An Asian Journal, Vol. 9, pp. 2928–2936.
2014 article
IR-MALDESI Mass Spectrometry Imaging of Biological Tissue Sections Using Ice as a Matrix
Robichaud, G., Barry, J. A., & Muddiman, D. C. (2014, January 2). Journal of the American Society for Mass Spectrometry, Vol. 25, pp. 319–328.
2014 article
Mapping Antiretroviral Drugs in Tissue by IR-MALDESI MSI Coupled to the Q Exactive and Comparison with LC-MS/MS SRM Assay
Barry, J. A., Robichaud, G., Bokhart, M. T., Thompson, C., Sykes, C., Kashuba, A. D. M., & Muddiman, D. C. (2014, April 17). Journal of the American Society for Mass Spectrometry, Vol. 25, pp. 2038–2047.
2014 article
Michael Gross: 25 Years of Dedication and Leadership of JASMS (1990–2015)
Muddiman, D. C. (2014, December 23). Journal of the American Society for Mass Spectrometry, Vol. 26, pp. 1–4.
2014 article
Quantitative mass spectrometry imaging of emtricitabine in cervical tissue model using infrared matrix-assisted laser desorption electrospray ionization
Bokhart, M. T., Rosen, E., Thompson, C., Sykes, C., Kashuba, A. D. M., & Muddiman, D. C. (2014, October 15). Analytical and Bioanalytical Chemistry, Vol. 407, pp. 2073–2084.
2014 article
Silver dopants for targeted and untargeted direct analysis of unsaturated lipids via infrared matrix‐assisted laser desorption electrospray ionization (IR‐MALDESI)
Meier, F., Garrard, K. P., & Muddiman, D. C. (2014, October 9). Rapid Communications in Mass Spectrometry, Vol. 28, pp. 2461–2470.
2014 journal article
Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling
The Plant Cell, 26(3), 876–893.
Contributors: H. Chen n, J. Song n, J. Wang n , Y. Lin n, J. Ducoste n , C. Shuford n, J. Liu n, Q. Li n
2013 article
Reply to the Comment on: “Utilizing Artificial Neural Networks in MATLAB to Achieve Parts-Per-Billion Mass Measurement Accuracy with a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer” by D. Keith Williams Jr., Alexander L. Kovach, David C. Muddiman, and Kenneth W. Hanck. J. Am. Soc. Mass Spectrom.20, 1303–1310 (2009)
Muddiman, D. C. (2013, December 20). Journal of the American Society for Mass Spectrometry, Vol. 25, pp. 697–697.
2013 article
Accurate Identification of Deamidated Peptides in Global Proteomics Using a Quadrupole Orbitrap Mass Spectrometer
Nepomuceno, A. I., Gibson, R. J., Randall, S. M., & Muddiman, D. C. (2013, November 29). Journal of Proteome Research, Vol. 13, pp. 777–785.
2013 article
Comparative Proteomic Analysis and IgE Binding Properties of Peanut Seed and Testa (Skin)
White, B. L., Gökce, E., Nepomuceno, A. I., Muddiman, D. C., Sanders, T. H., & Davis, J. P. (2013, March 27). Journal of Agricultural and Food Chemistry, Vol. 61, pp. 3957–3968.
2013 article
Factorial Experimental Designs Elucidate Significant Variables Affecting Data Acquisition on a Quadrupole Orbitrap Mass Spectrometer
Randall, S. M., Cardasis, H. L., & Muddiman, D. C. (2013, August 2). Journal of the American Society for Mass Spectrometry, Vol. 24, pp. 1501–1512.
2013 article
Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT): A Novel Glycan-Relative Quantification Strategy
Walker, S. H., Taylor, A. D., & Muddiman, D. C. (2013, July 15). Journal of the American Society for Mass Spectrometry, Vol. 24, pp. 1376–1384.
2013 article
MSiReader: An Open-Source Interface to View and Analyze High Resolving Power MS Imaging Files on Matlab Platform
Robichaud, G., Garrard, K. P., Barry, J. A., & Muddiman, D. C. (2013, March 27). Journal of the American Society for Mass Spectrometry, Vol. 24, pp. 718–721.
2013 article
Mass Recalibration of FT-ICR Mass Spectrometry Imaging Data Using the Average Frequency Shift of Ambient Ions
Barry, J. A., Robichaud, G., & Muddiman, D. C. (2013, May 28). Journal of the American Society for Mass Spectrometry, Vol. 24, pp. 1137–1145.
2013 article
Monolignol Pathway 4-Coumaric Acid:Coenzyme A Ligases in Populus. trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes
Chen, H.-C., Song, J., Williams, C. M., Shuford, C. M., Liu, J., Wang, J. P., … Chiang, V. L. (2013, January 23). PLANT PHYSIOLOGY, Vol. 161, pp. 1501–1516.
Contributors: H. Chen n, J. Song n, C. Williams n , C. Shuford n, J. Liu n, J. Wang n , Q. Li n, R. Shi n
2013 journal article
Multi-peptide nLC-PC-IDMS-SRM-based Assay for the quantification of biomarkers in the chicken ovarian cancer model
Methods, 61(3), 323–330.
2013 article
Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa
Shi, R., Shuford, C. M., Wang, J. P., Sun, Y.-H., Yang, Z., Chen, H.-C., … Chiang, V. L. (2013, June 13). Planta, Vol. 238, pp. 487–497.
Contributors: R. Shi n, C. Shuford n, J. Wang n , Y. Sun n, Z. Yang n, H. Chen n, S. Tunlaya-Anukit n, Q. Li n
2013 journal article
Temporal Analysis of theMagnaporthe OryzaeProteome During Conidial Germination and Cyclic AMP (cAMP)-mediated Appressorium Formation
Molecular & Cellular Proteomics, 12(8), 2249–2265.
2013 article
The use of a xylosylated plant glycoprotein as an internal standard accounting for N‐linked glycan cleavage and sample preparation variability
Walker, S. H., Taylor, A. D., & Muddiman, D. C. (2013, May 7). Rapid Communications in Mass Spectrometry, Vol. 27, pp. 1354–1358.
2013 article
Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments
Loziuk, P. L., Wang, J., Li, Q., Sederoff, R. R., Chiang, V. L., & Muddiman, D. C. (2013, October 22). Journal of Proteome Research, Vol. 12, pp. 5820–5829.
Contributors: P. Loziuk n, J. Wang n , Q. Li n, R. Sederoff n, V. Chiang n & n
2012 journal article
Alexander R. Ivanov, Alexander V. Lazarev (Eds): Sample preparation in biological mass spectrometry
Analytical and Bioanalytical Chemistry, 404(5), 1331–1332.
2012 article
Analytical strategies for the global quantification of intact proteins
Collier, T. S., & Muddiman, D. C. (2012, July 21). Amino Acids, Vol. 43, pp. 1109–1117.
2012 journal article
Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry
Journal of Proteome Research, 11(6), 3390–3404.
Contributors: C. Shuford n, Q. Li n, Y. Sun n, H. Chen n, J. Wang n , R. Shi n, R. Sederoff n, V. Chiang n, n
2012 article
Coordination-Driven Self-Assembly of Charged and Neutral Dendritic Tetrakis(ferrocenyl) Rhomboids
Li, Q.-J., Zhao, G.-Z., Chen, L.-J., Tan, H., Wang, C.-H., Wang, D.-X., … Yang, H.-B. (2012, October 3). Organometallics, Vol. 31, pp. 7241–7247.
2012 article
Direct Analysis of Textile Fabrics and Dyes Using Infrared Matrix-Assisted Laser Desorption Electrospray Ionization Mass Spectrometry
Cochran, K. H., Barry, J. A., Muddiman, D. C., & Hinks, D. (2012, December 13). Analytical Chemistry, Vol. 85, pp. 831–836.
2012 article
Evidence for Complex Molecular Architectures for Solvent-Extracted Lignins
Harton, S. E., Pingali, S. V., Nunnery, G. A., Baker, D. A., Walker, S. H., Muddiman, D. C., … Langan, P. (2012, April 17). ACS Macro Letters, Vol. 1, pp. 568–573.
2012 article
Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC–MS/MS based protein quantification and metabolic flux analysis
Wang, J. P., Shuford, C. M., Li, Q., Song, J., Lin, Y.-C., Sun, Y.-H., … Chiang, V. L. (2012, May 24). Planta, Vol. 236, p. 795â808.
Contributors: J. Wang n , C. Shuford n, Q. Li n, J. Song n, Y. Lin n, Y. Sun n, H. Chen n, C. Williams n
2012 article
High-resolution mass spectrometry
Maurer, H. H., & Muddiman, D. C. (2012, April 9). Analytical and Bioanalytical Chemistry, Vol. 403, pp. 1201–1202.
2012 article
In-Depth Analysis of the Magnaporthe oryzae Conidial Proteome
Gokce, E., Franck, W. L., Oh, Y., Dean, R. A., & Muddiman, D. C. (2012, October 8). Journal of Proteome Research, Vol. 11, pp. 5827–5835.
2012 article
Infrared Matrix-Assisted Laser Desorption Electrospray Ionization (IR-MALDESI) Imaging Source Coupled to a FT-ICR Mass Spectrometer
Robichaud, G., Barry, J. A., Garrard, K. P., & Muddiman, D. C. (2012, December 4). Journal of the American Society for Mass Spectrometry, Vol. 24, pp. 92–100.
2012 journal article
Peptide Production and Decay Rates Affect the Quantitative Accuracy of Protein Cleavage Isotope Dilution Mass Spectrometry (PC-IDMS)
Molecular & Cellular Proteomics, 11(9), 814–823.
2012 journal article
Poly Specific trans-Acyltransferase Machinery Revealed via Engineered Acyl-CoA Synthetases
ACS Chemical Biology, 8(1), 200–208.
2012 journal article
Polyubiquitin Is Required for Growth, Development and Pathogenicity in the Rice Blast Fungus Magnaporthe oryzae
PLoS ONE, 7(8), e42868.
Ed(s): K. Nielsen
2012 article
Systematic Comparison of Reverse Phase and Hydrophilic Interaction Liquid Chromatography Platforms for the Analysis of N-Linked Glycans
Walker, S. H., Carlisle, B. C., & Muddiman, D. C. (2012, September 6). Analytical Chemistry, Vol. 84, pp. 8198–8206.
2012 article
Targeted Proteomics of the Secretory Pathway Reveals the Secretome of Mouse Embryonic Fibroblasts and Human Embryonic Stem Cells
Sarkar, P., Randall, S. M., Muddiman, D. C., & Rao, B. M. (2012, September 15). Molecular & Cellular Proteomics, Vol. 11, pp. 1829–1839.
Contributors: P. Sarkar n, S. Randall n, n & B. Rao n
2011 journal article
Absolute quantification of free glutathione and cysteine in aquatic insects using isotope dilution and selected reaction monitoring
Analytical and Bioanalytical Chemistry, 402(1), 357–366.
Contributors: C. Shuford n, M. Poteat n, D. Buchwalter n & n
2011 article
Capitalizing on the hydrophobic bias of electrospray ionization through chemical modification in mass spectrometry-based proteomics
Shuford, C. M., & Muddiman, D. C. (2011, June 1). Expert Review of Proteomics, Vol. 8, pp. 317–323.
2011 article
Comparison of stable‐isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression
Collier, T. S., Randall, S. M., Sarkar, P., Rao, B. M., Dean, R. A., & Muddiman, D. C. (2011, August 4). Rapid Communications in Mass Spectrometry, Vol. 25, pp. 2524–2532.
Contributors: T. Collier n, S. Randall n, P. Sarkar n, B. Rao n , R. Dean n & n
2011 article
Evaluation of Normalization Methods on GeLC-MS/MS Label-Free Spectral Counting Data to Correct for Variation during Proteomic Workflows
Gokce, E., Shuford, C. M., Franck, W. L., Dean, R. A., & Muddiman, D. C. (2011, September 23). Journal of the American Society for Mass Spectrometry, Vol. 22, pp. 2199–2208.
2011 article
Facile Self-Assembly of Supramolecular Hexakisferrocenyl Triangles via Coordination-Driven Self-Assembly and Their Electrochemical Behavior
Zhao, G.-Z., Li, Q.-J., Chen, L.-J., Tan, H., Wang, C.-H., Lehman, D. A., … Yang, H.-B. (2011, June 7). Organometallics, Vol. 30, pp. 3637–3642.
2011 article
Global optimization of the infrared matrix‐assisted laser desorption electrospray ionization (IR MALDESI) source for mass spectrometry using statistical design of experiments
Barry, J. A., & Muddiman, D. C. (2011, November 8). Rapid Communications in Mass Spectrometry, Vol. 25, pp. 3527–3536.
2011 article
Hydrophobic Derivatization of N-linked Glycans for Increased Ion Abundance in Electrospray Ionization Mass Spectrometry
Walker, S. H., Lilley, L. M., Enamorado, M. F., Comins, D. L., & Muddiman, D. C. (2011, May 2). Journal of the American Society for Mass Spectrometry, Vol. 22, pp. 1309–1317.
2011 journal article
Identification of alternative splice variants in Aspergillus flavus through comparison of multiple tandem MS search algorithms
BMC Genomics, 12.
2011 article
Improving Proteome Coverage on a LTQ-Orbitrap Using Design of Experiments
Andrews, G. L., Dean, R. A., Hawkridge, A. M., & Muddiman, D. C. (2011, February 14). Journal of the American Society for Mass Spectrometry, Vol. 22, pp. 773–783.
2011 article
Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC–MS
Gokce, E., Andrews, G. L., Dean, R. A., & Muddiman, D. C. (2011, February 5). Journal of Chromatography B, Vol. 879, pp. 610–614.
2011 journal article
John B. Fenn special issue recognizing the science of Professor John B. Fenn foreword
International Journal of Mass Spectrometry, 300(2-3), 72–73.
2011 article
John Bennett Fenn (1917–2010)
Muddiman, D. C. (2011, January 13). Science, Vol. 331, pp. 160–160.
2011 article
Membrane protein complexes catalyze both 4- and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis
Chen, H.-C., Li, Q., Shuford, C. M., Liu, J., Muddiman, D. C., Sederoff, R. R., & Chiang, V. L. (2011, December 12). Proceedings of the National Academy of Sciences, Vol. 108, pp. 21253–21258.
2011 chapter
N-Linked Global Glycan Profiling by NanoLC Mass Spectrometry
In Methods in Molecular Biology (pp. 87–97).
2011 article
Performance Characteristics of a New Hybrid Quadrupole Time-of-Flight Tandem Mass Spectrometer (TripleTOF 5600)
Andrews, G. L., Simons, B. L., Young, J. B., Hawkridge, A. M., & Muddiman, D. C. (2011, May 27). Analytical Chemistry, Vol. 83, pp. 5442–5446.
2011 article
Spectral Accuracy and Sulfur Counting Capabilities of the LTQ-FT-ICR and the LTQ-Orbitrap XL for Small Molecule Analysis
Blake, S. L., Walker, S. H., Muddiman, D. C., Hinks, D., & Beck, K. R. (2011, September 20). Journal of the American Society for Mass Spectrometry, Vol. 22, pp. 2269–2275.
2011 article
Stable-Isotope Labeled Hydrophobic Hydrazide Reagents for the Relative Quantification of N-Linked Glycans by Electrospray Ionization Mass Spectrometry
Walker, S. H., Budhathoki-Uprety, J., Novak, B. M., & Muddiman, D. C. (2011, July 20). Analytical Chemistry, Vol. 83, pp. 6738–6745.
2011 article
The subcellular proteome of undifferentiated human embryonic stem cells
Sarkar, P., Collier, T. S., Randall, S. M., Muddiman, D. C., & Rao, B. M. (2011, December 5). PROTEOMICS, Vol. 12, pp. 421–430.
Contributors: P. Sarkar n, T. Collier n, S. Randall n, n & B. Rao n
2010 journal article
Binding site on human immunoglobulin G for the affinity ligand HWRGWV
Journal of Molecular Recognition, n/a-n/a.
2010 journal article
Binding site on human immunoglobulin G for the affinity ligand HWRGWV
Journal of Molecular Recognition, 23(3), 271–282.
2010 article
Design, modeling, fabrication, and evaluation of the air amplifier for improved detection of biomolecules by electrospray ionization mass spectrometry
Robichaud, G., Dixon, R. B., Potturi, A. S., Cassidy, D., Edwards, J. R., Sohn, A., … Muddiman, D. C. (2010, April 22). International Journal of Mass Spectrometry, Vol. 300, pp. 99–107.
2010 journal article
Detection of Alternative Splice Variants at the Proteome Level inAspergillus flavus
Detection of Alternative Splice Variants at the Proteome Level in Aspergillus flavus. Journal of Proteome Research, 9(3), 1209–1217.
2010 article
Direct Comparison of Stable Isotope Labeling by Amino Acids in Cell Culture and Spectral Counting for Quantitative Proteomics
Collier, T. S., Sarkar, P., Franck, W. L., Rao, B. M., Dean, R. A., & Muddiman, D. C. (2010, September 16). Analytical Chemistry, Vol. 82, pp. 8696–8702.
Contributors: T. Collier n, P. Sarkar n, W. Franck n, B. Rao n , R. Dean n & n
2010 article
Erratum to: Measuring the intra-individual variability of the plasma proteome in the chicken model of spontaneous ovarian adenocarcinoma
Hawkridge, A. M., Wysocky, R. B., Petitte, J. N., Anderson, K. E., Mozdziak, P. E., Fletcher, O. J., … Muddiman, D. C. (2010, August 13). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1835–1835.
Contributors: A. Hawkridge n, R. Wysocky n, J. Petitte n , K. Anderson n , P. Mozdziak n , O. Fletcher n, J. Horowitz n, n
2010 article
Erratum to: Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2
Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, August 14). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1837–1837.
2010 article
Erratum to: Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting
Andrews, G., Lewis, D., Notey, J., Kelly, R., & Muddiman, D. (2010, August 12). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 1839–1839.
2010 article
Facile Self-Assembly of Dendritic Multiferrocenyl Hexagons and Their Electrochemistry
Zhao, G.-Z., Chen, L.-J., Wang, C.-H., Yang, H.-B., Ghosh, K., Zheng, Y.-R., … Stang, P. J. (2010, October 12). Organometallics, Vol. 29, pp. 6137–6140.
2010 journal article
Foreword
International Journal of Mass Spectrometry, 300(2-3), 72–73.
2010 article
Interplay of Permanent Charge and Hydrophobicity in the Electrospray Ionization of Glycans
Walker, S. H., Papas, B. N., Comins, D. L., & Muddiman, D. C. (2010, June 30). Analytical Chemistry, Vol. 82, pp. 6636–6642.
2010 article
Measuring the intra-individual variability of the plasma proteome in the chicken model of spontaneous ovarian adenocarcinoma
Hawkridge, A. M., Wysocky, R. B., Petitte, J. N., Anderson, K. E., Mozdziak, P. E., Fletcher, O. J., … Muddiman, D. C. (2010, July 16). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 737–749.
Contributors: A. Hawkridge n, R. Wysocky n, J. Petitte n , K. Anderson n , P. Mozdziak n , O. Fletcher n, J. Horowitz n, n
2010 article
One-year plasma N-linked glycome intra-individual and inter-individual variability in the chicken model of spontaneous ovarian adenocarcinoma
Dixon, R. B., Bereman, M. S., Petitte, J. N., Hawkridge, A. M., & Muddiman, D. C. (2010, May 28). International Journal of Mass Spectrometry, Vol. 305, pp. 79–86.
2010 article
Part I: characterization of the extracellular proteome of the extreme thermophile Caldicellulosiruptor saccharolyticus by GeLC-MS2
Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010, July 10). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 377–389.
2010 article
Part II: defining and quantifying individual and co-cultured intracellular proteomes of two thermophilic microorganisms by GeLC-MS2 and spectral counting
Muddiman, D., Andrews, G., Lewis, D., Notey, J., & Kelly, R. (2010, June 26). Analytical and Bioanalytical Chemistry, Vol. 398, pp. 391–404.
2010 article
Quantitative top-down proteomics of SILAC labeled human embryonic stem cells
Collier, T. S., Sarkar, P., Rao, B., & Muddiman, D. C. (2010, February 9). Journal of the American Society for Mass Spectrometry, Vol. 21, pp. 879–889.
Contributors: T. Collier n, P. Sarkar n, B. Rao n & n
2010 article
Self-Assembly of Dendritic Tris(crown ether) Hexagons and Their Complexation with Dibenzylammonium Cations
Xu, X.-D., Yang, H.-B., Zheng, Y.-R., Ghosh, K., Lyndon, M. M., Muddiman, D. C., & Stang, P. J. (2010, September 29). The Journal of Organic Chemistry, Vol. 75, pp. 7373–7380.
2010 article
Study of the ionization mechanism in hybrid laser based desorption techniques
Dixon, R. B., & Muddiman, D. C. (2010, January 1). The Analyst, Vol. 135, pp. 880–882.
2010 article
The effects of abundant plasma protein depletion on global glycan profiling using NanoLC FT-ICR mass spectrometry
Bereman, M. S., & Muddiman, D. C. (2010, January 19). Analytical and Bioanalytical Chemistry, Vol. 396, pp. 1473–1479.
2010 article
Utilizing Spectral Counting To Quantitatively Characterize Tandem Removal of Abundant Proteins (TRAP) in Human Plasma
Shuford, C. M., Hawkridge, A. M., Burnett, J. C., & Muddiman, D. C. (2010, November 19). Analytical Chemistry, Vol. 82, pp. 10179–10185.
2009 article
Absolute Quantification of C-Reactive Protein in Human Plasma Derived from Patients with Epithelial Ovarian Cancer Utilizing Protein Cleavage Isotope Dilution Mass Spectrometry
Williams, D. K., & Muddiman, D. C. (2009, January 6). Journal of Proteome Research, Vol. 8, pp. 1085–1090.
2009 article
Atmospheric pressure infrared (10.6 µm) laser desorption electrospray ionization (IR‐LDESI) coupled to a LTQ Fourier transform ion cyclotron resonance mass spectrometer
Sampson, J. S., & Muddiman, D. C. (2009, June 5). Rapid Communications in Mass Spectrometry, Vol. 23, pp. 1989–1992.
2009 article
Characterization of charge separation in the array of Micromachined UltraSonic Electrospray (AMUSE) ion source for mass spectrometry
Forbes, T. P., Dixon, R. B., Muddiman, D. C., Degertekin, F. L., & Fedorov, A. G. (2009, May 21). Journal of the American Society for Mass Spectrometry, Vol. 20, pp. 1684–1687.
2009 journal article
Coupling of a vented column with splitless nanoRPLC-ESI-MS for the improved separation and detection of brain natriuretic peptide-32 and its proteolytic peptides
Journal of Chromatography B, 877(10), 948–954.
2009 article
Development of a Robust and High Throughput Method for Profiling N-Linked Glycans Derived from Plasma Glycoproteins by NanoLC−FTICR Mass Spectrometry
Bereman, M. S., Young, D. D., Deiters, A., & Muddiman, D. C. (2009, May 12). Journal of Proteome Research, Vol. 8, pp. 3764–3770.
2009 article
Evaluation of the ALiPHAT method for PC-IDMS and correlation of limits-of-detection with nonpolar surface area
Williams, D. K., Comins, D. L., Whitten, J. L., & Muddiman, D. C. (2009, August 11). Journal of the American Society for Mass Spectrometry, Vol. 20, pp. 2006–2012.
2009 article
Improving limits of detection for B-type natriuretic peptide using PC-IDMS: An application of the ALiPHAT strategy
Shuford, C. M., Comins, D. L., Whitten, J. L., Burnett, J. C., Jr., & Muddiman, D. C. (2009, November 19). The Analyst, Vol. 135, pp. 36–41.
2009 article
Increasing the hydrophobicity and electrospray response of glycans through derivatization with novel cationic hydrazides
Bereman, M. S., Comins, D. L., & Muddiman, D. C. (2009, November 18). Chemical Communications, Vol. 46, pp. 237–239.
2009 article
Mass Spectrometry–Based Biomarker Discovery: Toward a Global Proteome Index of Individuality
Hawkridge, A. M., & Muddiman, D. C. (2009, July 19). Annual Review of Analytical Chemistry, Vol. 2, pp. 265–277.
2009 article
Proteomics Characterization of Cell Membrane Blebs in Human Retinal Pigment Epithelium Cells
Alcazar, O., Hawkridge, A. M., Collier, T. S., Cousins, S. W., Bhattacharya, S. K., Muddiman, D. C., & Marin-Castano, M. E. (2009, June 30). Molecular & Cellular Proteomics, Vol. 8, pp. 2201–2211.
2009 journal article
Species-dependent hepatic metabolism of immunosuppressive agent tacrolimus (FK-506)
Xenobiotica, 39(10), 757–765.
2009 article
Synthesis of Six-Component Metallodendrimers via [3 + 3] Coordination-Driven Self-Assembly
Yang, H.-B., Northrop, B. H., Zheng, Y.-R., Ghosh, K., Lyndon, M. M., Muddiman, D. C., & Stang, P. J. (2009, April 3). The Journal of Organic Chemistry, Vol. 74, pp. 3524–3527.
2009 article
Tandem Mass Spectrometry of Thiolate-Protected Au Nanoparticles NaxAu25(SC2H4Ph)18−y(S(C2H4O)5CH3)y
Fields-Zinna, C. A., Sampson, J. S., Crowe, M. C., Tracy, J. B., Parker, J. F., deNey, A. M., … Murray, R. W. (2009, September 9). Journal of the American Chemical Society, Vol. 131, pp. 13844–13851.
Contributors: C. Fields Zinna n, J. Sampson n, M. Crowe n, J. Tracy n , J. Parker n, A. Deney n, n , R. Murray n
2009 article
Utilizing artificial neural networks in matlab to achieve parts-per-billion mass measurement accuracy with a fourier transform ion cyclotron resonance mass spectrometer
Williams, D. K., Kovach, A. L., Muddiman, D. C., & Hanck, K. W. (2009, March 12). Journal of the American Society for Mass Spectrometry, Vol. 20, pp. 1303–1310.
2008 article
A New Family of Multiferrocene Complexes with Enhanced Control of Structure and Stoichiometry via Coordination-Driven Self-Assembly and Their Electrochemistry
Yang, H.-B., Ghosh, K., Zhao, Y., Northrop, B. H., Lyndon, M. M., Muddiman, D. C., … Stang, P. J. (2008, January 1). Journal of the American Chemical Society, Vol. 130, p. 839-.
2008 article
Ambient Aerodynamic Ionization Source for Remote Analyte Sampling and Mass Spectrometric Analysis
Dixon, R. B., Sampson, J. S., Hawkridge, A. M., & Muddiman, D. C. (2008, June 5). Analytical Chemistry, Vol. 80, pp. 5266–5271.
2008 article
Calibration laws based on multiple linear regression applied to matrix‐assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry
Williams, D. K., Jr., Chadwick, M. A., Williams, T. I., & Muddiman, D. C. (2008, June 19). Journal of Mass Spectrometry, Vol. 43, pp. 1659–1663.
Contributors: D. Williams Jr. n, M. Chadwick n, T. Williams n & n
2008 article
Construction of a versatile high precision ambient ionization source for direct analysis and imaging
Sampson, J. S., Hawkridge, A. M., & Muddiman, D. C. (2008, June 29). Journal of the American Society for Mass Spectrometry, Vol. 19, pp. 1527–1534.
2008 article
Coordination-Driven Face-Directed Self-Assembly of Trigonal Prisms. Face-Based Conformational Chirality
Caskey, D. C., Yamamoto, T., Addicott, C., Shoemaker, R. K., Vacek, J., Hawkridge, A. M., … Stang, P. J. (2008, May 21). Journal of the American Chemical Society, Vol. 130, pp. 7620–7628.
2008 article
Coordination-Driven Self-Assembly of Cavity-Cored Multiple Crown Ether Derivatives and Poly[2]pseudorotaxanes
Ghosh, K., Yang, H.-B., Northrop, B. H., Lyndon, M. M., Zheng, Y.-R., Muddiman, D. C., & Stang, P. J. (2008, March 15). Journal of the American Chemical Society, Vol. 130, pp. 5320–5334.
2008 article
Development and Characterization of an Ionization Technique for Analysis of Biological Macromolecules: Liquid Matrix-Assisted Laser Desorption Electrospray Ionization
Sampson, J. S., Hawkridge, A. M., & Muddiman, D. C. (2008, July 26). Analytical Chemistry, Vol. 80, pp. 6773–6778.
2008 article
Development of a nanoLC LTQ Orbitrap Mass Spectrometric Method for Profiling Glycans Derived from Plasma from Healthy, Benign Tumor Control, and Epithelial Ovarian Cancer Patients
Bereman, M. S., Williams, T. I., & Muddiman, D. C. (2008, December 29). Analytical Chemistry, Vol. 2, pp. 1130–1136.
Contributors: M. Bereman n, T. Williams n & n
2008 journal article
Effect of Plasma Protein Depletion on BNP-32 Recovery
Clinical Chemistry, 54(5), 933–934.
2008 article
Generation of multiply charged peptides and proteins by radio frequency acoustic desorption and ionization for mass spectrometric detection
Dixon, R. B., Sampson, J. S., & Muddiman, D. C. (2008, December 7). Journal of the American Society for Mass Spectrometry, Vol. 20, pp. 597–600.
2008 journal article
Human Proteinpedia enables sharing of human protein data
Nature Biotechnology, 26(2), 164–167.
2008 personal communication
Human Proteinpedia enables sharing of human protein data
2008 article
Intact and top-down characterization of biomolecules and direct analysis using infrared matrix-assisted laser desorption electrospray ionization coupled to FT-ICR mass spectrometry
Sampson, J. S., Murray, K. K., & Muddiman, D. C. (2008, December 13). Journal of the American Society for Mass Spectrometry, Vol. 20, pp. 667–673.
2008 article
Investigations with O‐linked protein glycosylations by matrix‐assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry
Williams, T. I., Saggese, D. A., Toups, K. L., Frahm, J. L., An, H. J., Li, B., … Muddiman, D. C. (2008, March 6). Journal of Mass Spectrometry, Vol. 43, pp. 1215–1223.
Contributors: T. Williams n , D. Saggese n, K. Toups n, J. Frahm n, H. An *, B. Li*, C. Lebrilla *, n
2008 article
Mass measurement accuracy comparisons between a double‐focusing magnetic sector and a time‐of‐flight mass analyzer
Bereman, M. S., Lyndon, M. M., Dixon, R. B., & Muddiman, D. C. (2008, April 17). Rapid Communications in Mass Spectrometry.
2008 article
Studying O-Linked Protein Glycosylations in Human Plasma
Williams, T. I., Saggese, D. A., & Muddiman, D. C. (2008, April 19). Journal of Proteome Research.
Contributors: T. Williams n , D. Saggese n & n
2008 journal article
Synthesis, Characterization, and Application of Iodoacetamide Derivatives Utilized for the ALiPHAT Strategy
Journal of the American Chemical Society, 130(7), 2122–2123.
2008 article
Synthesis, characterization, and application of lodoacetamide derivatives utilized for the ALiPHAT strategy
Journal of the American Chemical Society, Vol. 130, p. 2122-.
2008 article
Temperature-Dependent Regulation of Proteins in Aspergillus flavus: Whole Organism Stable Isotope Labeling by Amino Acids
Georgianna, D. R., Hawkridge, A. M., Muddiman, D. C., & Payne, G. A. (2008, June 5). Journal of Proteome Research, Vol. 7, pp. 2973–2979.
2008 article
Top-Down Identification and Quantification of Stable Isotope Labeled Proteins from Aspergillus flavus Using Online Nano-Flow Reversed-Phase Liquid Chromatography Coupled to a LTQ-FTICR Mass Spectrometer
Collier, T. S., Hawkridge, A. M., Georgianna, D. R., Payne, G. A., & Muddiman, D. C. (2008, May 31). Analytical Chemistry, Vol. 80, pp. 4994–5001.
2007 article
A Highly Efficient Approach to the Self-Assembly of Hexagonal Cavity-Cored Tris[2]pseudorotaxanes from Several Components via Multiple Noncovalent Interactions
Yang, H.-B., Ghosh, K., Northrop, B. H., Zheng, Y.-R., Lyndon, M. M., Muddiman, D. C., & Stang, P. J. (2007, October 27). Journal of the American Chemical Society, Vol. 129, p. 14187.
2007 article
Achieving Augmented Limits of Detection for Peptides with Hydrophobic Alkyl Tags
Frahm, J. L., Bori, I. D., Comins, D. L., Hawkridge, A. M., & Muddiman, D. C. (2007, May 4). Analytical Chemistry, Vol. 79, pp. 3989–3995.
2007 article
Carbohydrate Analysis by Desorption Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
Bereman, M. S., Williams, T. I., & Muddiman, D. C. (2007, October 6). Analytical Chemistry, Vol. 79, pp. 8812–8815.
Contributors: M. Bereman n, T. Williams n & n
2007 article
Coordination-Driven Self-Assembly of Metallodendrimers Possessing Well-Defined and Controllable Cavities as Cores
Yang, H.-B., Hawkridge, A. M., Huang, S. D., Das, N., Bunge, S. D., Muddiman, D. C., & Stang, P. J. (2007, January 27). Journal of the American Chemical Society, Vol. 129, pp. 2120–2129.
2007 journal article
Details of the Structure Determination of the Sulfated Steroids PSDS and PADS: New Components of the Sea Lamprey (Petromyzonmarinus) Migratory Pheromone
The Journal of Organic Chemistry, 72(20), 7544–7550.
2007 article
Details of the structure determination of the sulfated steroids PSDS and PADS: New components of the sea lamprey (Petromyzon marinus) migratory pheromone
Journal of Organic Chemistry, Vol. 72, pp. 7544–7550.
2007 article
Detection of Attomole Amounts of Analyte by Desorption Electrospray Ionization Mass Spectrometry (DESI-MS) Determined Using Fluorescence Spectroscopy
Bereman, M. S., & Muddiman, D. C. (2007, March 22). Journal of the American Society for Mass Spectrometry, Vol. 18, pp. 1093–1096.
2007 article
Differential protein expression in male and female human lumbar cerebrospinal fluid using iTRAQ reagents after abundant protein depletion
Ogata, Y., Charlesworth, M. C., Higgins, L. A., Keegan, B. M., Vernino, S., & Muddiman, D. C. (2007, September 13). PROTEOMICS, Vol. 7, pp. 3726–3734.
2007 article
Direct characterization of intact polypeptides by matrix‐assisted laser desorption electrospray ionization quadrupole Fourier transform ion cyclotron resonance mass spectrometry
Sampson, J. S., Hawkridge, A. M., & Muddiman, D. C. (2007, February 23). Rapid Communications in Mass Spectrometry, Vol. 21, pp. 1150–1154.
2007 article
Dual Electrospray Ion Source for Electron-Transfer Dissociation on a Hybrid Linear Ion Trap−Orbitrap Mass Spectrometer
D. Keith Williams, McAlister, G. C., Good, D. M., Coon, J. J., & Muddiman, D. C. (2007, September 15). Analytical Chemistry, Vol. 79, pp. 7916–7919.
2007 article
Effect of matrix crystal structure on ion abundance of carbohydrates by matrix‐assisted laser desorption/ionization Fourier transform ion cyclotron resonance mass spectrometry
Williams, T. I., Saggese, D. A., Wilcox, R. J., Martin, J. D., & Muddiman, D. C. (2007, February 5). Rapid Communications in Mass Spectrometry, Vol. 21, pp. 807–811.
Contributors: T. Williams n , D. Saggese n, R. Wilcox n, J. Martin n & n
2007 journal article
Elevated Levels of Phosphorylated Fibrinogen-α-Iso-forms and Differential Expression of Other Post-Translationally Modified Proteins in the Plasma of Ovarian Cancer PatientsJ. Proteome Res.2006,5, 3318−3325.
Journal of Proteome Research, 6(4), 1615–1615.
2007 article
Epithelial Ovarian Cancer: Disease Etiology, Treatment, Detection, and Investigational Gene, Metabolite, and Protein Biomarkers
Williams, T. I., Toups, K. L., Saggese, D. A., Kalli, K. R., Cliby, W. A., & Muddiman, D. C. (2007, June 21). Journal of Proteome Research, Vol. 8, pp. 2936–2962.
Contributors: T. Williams n , K. Toups n, D. Saggese n, K. Kalli n, W. Cliby n & n
2007 article
Parts-Per-Billion Mass Measurement Accuracy Achieved through the Combination of Multiple Linear Regression and Automatic Gain Control in a Fourier Transform Ion Cyclotron Resonance Mass Spectrometer
Williams, D. K., & Muddiman, D. C. (2007, June 1). Analytical Chemistry, Vol. 79, pp. 5058–5063.
2007 article
Probing the mechanisms of an air amplifier using a LTQ-FT-ICR-MS and fluorescence spectroscopy
Dixon, R. B., Muddiman, D. C., Hawkridge, A. M., & Fedorov, A. G. (2007, August 17). Journal of the American Society for Mass Spectrometry, Vol. 18, pp. 1909–1913.
2007 article
Quantitative comparison of a flared and a standard heated metal capillary inlet with a voltage‐assisted air amplifier on an electrospray ionization linear ion trap mass spectrometer
Dixon, R. B., & Muddiman, D. C. (2007, September 3). Rapid Communications in Mass Spectrometry, Vol. 21, pp. 3207–3212.
2007 article
Remote mass spectrometric sampling of electrospray- and desorption electrospra-generated ions using an air ejector
Journal of the American Society for Mass Spectrometry, Vol. 18, pp. 1844–1847.
2007 journal article
Remote mass spectrometric sampling of electrospray- and desorption electrospray-generated ions using an air ejector
Journal of the American Society for Mass Spectrometry, 18(10), 1844–1847.
2007 article
Understanding the influence of post‐excite radius and axial confinement on quantitative proteomic measurements using Fourier transform ion cyclotron resonance mass spectrometry
Frahm, J. L., Velez, C. M. C., & Muddiman, D. C. (2007, February 28). Rapid Communications in Mass Spectrometry, Vol. 21, pp. 1196–1204.
2006 article
"Lewis & Clark" Proteomics
Muddiman, D. C. (2006, February 1). Journal of Proteome Research, Vol. 5, pp. 221–222.
2006 article
A Method for Automatically Interpreting Mass Spectra of 18O-Labeled Isotopic Clusters
Mason, C. J., Therneau, T. M., Eckel-Passow, J. E., Johnson, K. L., Oberg, A. L., Olson, J. E., … Bergen, H. R. (2006, October 26). Molecular & Cellular Proteomics, Vol. 6, pp. 305–318.
2006 article
Accessible proteomics space and its implications for peak capacity for zero‐, one‐ and two‐dimensional separations coupled with FT‐ICR and TOF mass spectrometry
Frahm, J. L., Howard, B. E., Heber, S., & Muddiman, D. C. (2006, March 1). Journal of Mass Spectrometry, Vol. 41, pp. 281–288.
2006 journal article
Chromatin Assembly Factor 1 Interacts with Histone H3 Methylated at Lysine 79 in the Processes of Epigenetic Silencing and DNA Repair†
Biochemistry, 45(9), 2852–2861.
2006 journal article
Direct high-resolution peptide and protein analysis by desorption electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
Rapid Communications in Mass Spectrometry, 20(22), 3409–3411.
2006 article
Elevated Levels of Phosphorylated Fibrinogen-α-Isoforms and Differential Expression of Other Post-Translationally Modified Proteins in the Plasma of Ovarian Cancer Patients
Ogata, Y., Heppelmann, C. J., Charlesworth, M. C., Madden, B. J., Miller, M. N., Kalli, K. R., … Muddiman, D. C. (2006, November 14). Journal of Proteome Research, Vol. 5, pp. 3318–3325.
2006 journal article
Focus in Honor of James A. McCloskey, Recipient of the 2005 ASMS award for a distinguished contribution in mass spectrometry
Journal of the American Society for Mass Spectrometry, 17(10), I1–I2.
2006 article
Generation and detection of multiply-charged peptides and proteins by matrix-assisted laser desorption electrospray ionization (MALDESI) fourier transform ion cyclotron resonance mass spectrometry
Sampson, J. S., Hawkridge, A. M., & Muddiman, D. C. (2006, September 7). Journal of the American Society for Mass Spectrometry, Vol. 17, pp. 1712–1716.
2006 journal article
Identification of Subunit−Subunit Interactions in Bacteriophage P22 Procapsids by Chemical Cross-linking and Mass Spectrometry
Journal of Proteome Research, 5(2), 370–377.
2006 article
Incorporation of 2,6-Di(4,4‘-dipyridyl)-9-thiabicyclo[3.3.1]nonane into Discrete 2D Supramolecules via Coordination-Driven Self-Assembly
Yang, H.-B., Das, N., Huang, F., Hawkridge, A. M., Díaz, D. D., Arif, A. M., … Stang, P. J. (2006, July 15). The Journal of Organic Chemistry, Vol. 71, pp. 6644–6647.
2006 journal article
Molecular Architecture via Coordination: Self-Assembly of Nanoscale Hexagonal Metallodendrimers with Designed Building Blocks
Journal of the American Chemical Society, 128(31), 10014–10015.
2006 journal article
Molecular Architecture via Coordination: Self-Assembly of Nanoscale Hexagonal Metallodendrimers with Designed Building Blocks
Journal of American Chemical Society, 128(31), 10014–10015.
2006 article
Sub parts-per-million mass measurement accuracy of intact proteins and product ions achieved using a dual electrospray ionization quadrupole fourier transform ion cyclotron resonance mass spectrometer
Williams, D. K., Hawkridge, A. M., & Muddiman, D. C. (2006, September 19). Journal of the American Society for Mass Spectrometry, Vol. 18, pp. 1–7.
2005 article
Accurate mass precursor ion data and tandem mass spectrometry identify a class I human leukocyte antigen A*0201-presented peptide originating from vaccinia virus
Johnson, K. L., Ovsyannikova, I. G., Madden, B. J., Poland, G. A., & Muddiman, D. C. (2005, September 27). Journal of the American Society for Mass Spectrometry, Vol. 16, pp. 1812–1817.
2005 journal article
Coordination-Driven Self-Assemblies with a Carborane Backbone
Journal of the American Chemical Society, 127(34), 12131–12139.
2005 journal article
Déjà Vu All Over Again: Skin Cap Still Contains a High-Potency Glucocorticosteroid
Archives of Dermatology, 141(6).
2005 journal article
Effect of post-excitation radius on ion abundance, mass measurement accuracy, and isotopic distributions in Fourier transform ion cyclotron resonance mass spectrometry
Rapid Communications in Mass Spectrometry, 19(7), 915–918.
2005 journal article
Evaluation of Protein Depletion Methods for the Analysis of Total-, Phospho- and Glycoproteins in Lumbar Cerebrospinal Fluid
Journal of Proteome Research, 4(3), 837–845.
2005 journal article
Gentle Protein Ionization Assisted by High-Velocity Gas Flow
Analytical Chemistry, 77(19), 6174–6183.
2005 article
Identification of Class II HLA-DRB1*03-Bound Measles Virus Peptides by 2D-Liquid Chromatography Tandem Mass Spectrometry
Johnson, K. L., Ovsyannikova, I. G., Poland, G. A., & Muddiman, D. C. (2005, October 19). Journal of Proteome Research, Vol. 4, pp. 2243–2249.
2005 journal article
Leveling response factors in the electrospray ionization process using a heated capillary interface
Journal of the American Society for Mass Spectrometry, 16(5), 772–778.
2005 journal article
Mapping Sites of Protein Phosphorylation by Mass Spectrometry Utilizing a Chemical-Enzymatic Approach: Characterization of Products from α-S1Casein Phosphopeptides
Journal of Proteome Research, 4(2), 424–434.
2005 journal article
Normalization of relative peptide ratios derived from in-gel digests: applications to protein variant analysis at the peptide level
Rapid Communications in Mass Spectrometry, 19(19), 2871–2877.
2005 journal article
Nucleic Acid Analysis by Fourier Transform Ion Cyclotron Resonance Mass Spectrometry at the Beginning of the Twenty-First Century
Current Pharmaceutical Design, 11(20), 2593–2613.
2005 journal article
Primary Trabecular Meshwork Cells Incubated in Human Aqueous Humor Differ from Cells Incubated in Serum Supplements
Investigative Opthalmology & Visual Science, 46(8), 2848.
2005 journal article
Protein expression profiling of CLL B cells using replicate off-line strong cation exchange chromatography and LC–MS/MS
Journal of Chromatography B, 819(1), 33–39.
2005 journal article
Quantitative Protein Expression Analysis Of CLL B Cells from Mutated and Unmutated IgVHSubgroups Using Acid-Cleavable Isotope-Coded Affinity Tag Reagents
Journal of Proteome Research, 4(4), 1310–1317.
2005 journal article
Quantitative mass spectral evidence for the absence of circulating brain natriuretic peptide (BNP-32) in severe human heart failure
Proceedings of the National Academy of Sciences, 102(48), 17442–17447.
2005 journal article
Reproducibility of Retention Time using a Splitless nanoLC Coupled to an ESI-FTICR Mass Spectrometer
Journal of Biomolecular Techniques, 16, 4, 414–422.
2005 journal article
Statistical Evaluation of Internal and External Mass Calibration Laws Utilized in Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
Analytical Chemistry, 77(8), 2406–2414.
2004 journal article
A method for calculating 16o/18o peptide ion ratios for the relative quantification of proteomes
Journal of the American Society for Mass Spectrometry, 15(4), 437–445.
2004 journal article
Absolute Quantification of the Model Biomarker Prostate-Specific Antigen in Serum by LC−MS/MS Using Protein Cleavage and Isotope Dilution Mass Spectrometry
Journal of Proteome Research, 3(3), 644–652.
2004 conference paper
Accurate and Expedited Diagnosis of Amyloidotic Transthyretin Neuropathy: Proteomic and Genomic Approach
Annals of Neurology, 56(S8), 29.
2004 journal article
Analysis of the Low Molecular Weight Fraction of Serum by LC-Dual ESI-FT-ICR Mass Spectrometry: Precision of Retention Time, Mass, and Ion Abundance
Analytical Chemistry, 76(17), 5097–5103.
2004 journal article
Analytical Performance of a Venturi Device Integrated into an Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometer for Analysis of Nucleic Acids
Analytical Chemistry, 76(14), 4118–4122.
2004 journal article
Androgens Negatively Regulate Forkhead Transcription Factor FKHR (FOXO1) through a Proteolytic Mechanism in Prostate Cancer Cells
Journal of Biological Chemistry, 279(14), 13866–13877.
2004 journal article
Derivatives of pentamidine designed to target the Leishmania lipophosphoglycan
Tetrahedron Letters, 46(4), 695–698.
2004 journal article
Detection of Genetic Variants of Transthyretin by Liquid Chromatography–Dual Electrospray Ionization Fourier-Transform Ion-Cyclotron-Resonance Mass Spectrometry
Clinical Chemistry, 50(9), 1535–1543.
2004 journal article
Discovery of Ovarian Cancer Biomarkers in Serum Using NanoLC Electrospray Ionization TOF and FT-ICR Mass Spectrometry
Disease Markers, 19(4-5), 239–249.
2004 journal article
Evaluation of a Cleavable Stable Isotope Labeled Synthetic Peptide for Absolute Protein Quantification Using LC−MS/MS
Journal of Proteome Research, 3(3), 658–661.
2004 journal article
Identification of Transthyretin Variants by Sequential Proteomic and Genomic Analysis
Clinical Chemistry, 50(9), 1544–1552.
2004 journal article
Informed use of proteolytic inhibitors in biomarker discovery
Rapid Communications in Mass Spectrometry, 18(9), 1001–1002.
2004 journal article
Utility of accurate monoisotopic mass measurements to confidently identify lambda exonuclease generated single-stranded amplicons containing 7-deaza analogs by electrospray ionization FT-ICR mass spectrometry
International Journal of Mass Spectrometry, 234(1-3), 79–87.
2003 journal article
1H NMR and electrospray mass spectrometry of the mono-ionized bis(2,2′-bis(4,5-dimethylimidazole)chloronitrosylruthenium(II) complex ([Ru(NO)Cl(LH2)2]+, LH2=2,2′-bis(4,5-dimethylimidazole)
Inorganica Chimica Acta, 343, 317–328.
2003 journal article
Advantages of Thermococcus kodakaraenis (KOD) DNA Polymerase for PCR-mass spectrometry based analyses
Journal of the American Society for Mass Spectrometry, 14(6), 601–604.
2003 journal article
Cancer Biomarkers: How Proteomics is Leading to the Discovery of New Markers
Clinical Laboratory News, 29, 12–16.
2003 journal article
Coordination-Driven Self-Assembly of Supramolecular Cages: Heteroatom-Containing and Complementary Trigonal Prisms
Journal of the American Chemical Society, 125(32), 9647–9652.
2003 journal article
Determination of a correction to improve mass measurement accuracy of isotopically unresolved polymerase chain reaction amplicons by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
Rapid Communications in Mass Spectrometry, 17(15), 1714–1722.
2003 journal article
Determination of the relative energies of activation for the dissociation of aromatic versus aliphatic phosphopeptides by ESI-FTICR-MS and IRMPD
Journal of the American Society for Mass Spectrometry, 15(1), 121–127.
2003 journal article
Dual Electrospray Ionization Source for Confident Generation of Accurate Mass Tags Using Liquid Chromatography Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
Analytical Chemistry, 75(14), 3411–3418.
2003 journal article
Enzymatic strategies for the characterization of nucleic acids by electrospray ionization mass spectrometry
Rapid Communications in Mass Spectrometry, 17(24), 2699–2706.
2003 journal article
Identification and Characterization of Novel, Naturally Processed Measles Virus Class II HLA-DRB1 Peptides
Journal of Virology, 78(1), 42–51.
2003 journal article
Implications of Hydrophobicity and Free Energy of Solvation for Characterization of Nucleic Acids by Electrospray Ionization Mass Spectrometry
Analytical Chemistry, 75(6), 1331–1339.
2003 journal article
Mass spectral determination of skeletal/cardiac actin isoform ratios in cardiac muscle
Rapid Communications in Mass Spectrometry, 17(13), 1467–1471.
2003 journal article
Naturally processed measles virus peptide eluted from class II HLA-DRB1*03 recognized by T lymphocytes from human blood
Virology, 312(2), 495–506.
2002 journal article
CEPH family 1362 STR database: An online resource for characterization of PCR products using electrospray ionization mass spectrometry
Journal of the American Society for Mass Spectrometry, 13(1), 89–90.
2002 journal article
Dual-micro-ESI source for precise mass determination on a quadrupole time-of-flight mass spectrometer for genomic and proteomic applications
Analytical and Bioanalytical Chemistry, 373(7), 538–546.
2002 journal article
Evaluation of sample preparation techniques for mass measurements of PCR products using ESI-FT-ICR mass spectrometry
Journal of the American Society for Mass Spectrometry, 13(4), 338–344.
2002 journal article
Gas-Phase Ion Unimolecular Dissociation for Rapid Phosphopeptide Mapping by IRMPD in a Penning Ion Trap: An Energetically Favored Process
Journal of the American Chemical Society, 124(23), 6546–6547.
2002 journal article
In celebration of the 70th birthday of Dr David M. Hercules
Analytical and Bioanalytical Chemistry, 373(7), 517–518.
2002 journal article
Memoirs, Hercules lineage, students, visiting scientists and staff
Analytical and Bioanalytical Chemistry, 373(7), 669–675.
2002 journal article
Solution composition and thermal denaturation for the production of single-stranded PCR amplicons: Piperidine-induced destabilization of the DNA duplex?
Journal of the American Society for Mass Spectrometry, 13(3), 232–240.
2002 journal article
Tailoring the gas-phase dissociation and determining the relative energy of activation for dissociation of 7-deaza purine modified oligonucleotides containing a repeating motif
International Journal of Mass Spectrometry, 219(1), 139–150.
2001 journal article
Complete sequencing of mono—deprotonated peptide nucleic acids by sustained off-resonance irradiation collision—induced dissociation
Journal of the American Society for Mass Spectrometry, 12(7), 805–809.
2001 journal article
Detection of double-stranded PCR amplicons at the attomole level electrosprayed from low nanomolar solutions using FT-ICR mass spectrometry
Fresenius' Journal of Analytical Chemistry, 369(3-4), 246–251.
2001 journal article
Genotyping of Simple and Compound Short Tandem Repeat Loci Using Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
Analytical Chemistry, 73(18), 4514–4521.
2001 journal article
Genotyping short tandem repeats using flow injection and electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
Rapid Communications in Mass Spectrometry, 15(5), 348–350.
2001 journal article
High-Mass Accuracy of Product Ions Produced by SORI-CID Using a Dual Electrospray Ionization Source Coupled with FTICR Mass Spectrometry
Analytical Chemistry, 73(6), 1247–1251.
2001 journal article
Homogeneous Preparations of 3′-Phosphoglycolate-Terminated Oligodeoxynucleotides from Bleomycin-Treated DNA as Verified by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
Analytical Biochemistry, 289(2), 274–280.
2001 journal article
Impact of ion cloud densities on the measurement of relative ion abundances in Fourier transform ion cyclotron resonance mass spectrometry: experimental observations of coulombically induced cyclotron radius perturbations and ion cloud dephasing rates
Journal of Mass Spectrometry, 36(2), 195–203.
2001 journal article
Perspectives on the use of electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for short tandem repeat genotyping in the post‐genome era
Journal of Mass Spectrometry (Special Feature), 36(6), 589–606.
2001 journal article
Selective, Sensitive, and Rapid Phosphopeptide Identification in Enzymatic Digests Using ESI-FTICR-MS with Infrared Multiphoton Dissociation
Analytical Chemistry, 73(14), 3305–3311.
2000 journal article
A dual electrospray ionization source combined with hexapole accumulation to achieve high mass accuracy of biopolymers in Fourier transform ion cyclotron resonance mass spectrometry
Journal of the American Society for Mass Spectrometry, 11(10), 876–883.
2000 entry reference
Absolute Quantification of Proteins by Mass Spectrometry
2000 journal article
An experimental and theoretical study of the gas-phase decomposition of monoprotonated peptide nucleic acids
Journal of the American Society for Mass Spectrometry, 11(7), 615–625.
2000 journal article
Preparation of single-stranded PCR products for electrospray ionization mass spectrometry using the DNA repair enzyme lambda exonuclease
The Analyst, 125(4), 619–626.
1999 journal article
Accurate characterization of the tyrosine hydroxylase forensic allele 9.3 through development of electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
Rapid Communications in Mass Spectrometry, 13(10), 954–962.
1999 journal article
Characterization of a microdialysis approach to prepare polymerase chain reaction products for electrospray ionization mass spectrometry using on-line ultraviolet absorbance measurements and inductively coupled plasma-atomic emission spectroscopy
Rapid Communications in Mass Spectrometry, 13(5), 323–330.
1999 journal article
Consequences of Nucleic Acid Conformation on the Binding of a Trinuclear Platinum Drug†
Biochemistry, 38(45), 14731–14737.
1999 journal article
Hemoglobinase Activity of the Lysine Gingipain Protease (Kgp) of Porphyromonas gingivalis W83
Journal of Bacteriology, 181(16), 4905–4913.
1999 journal article
Hydropathic influences on the quantification of equine heart cytochromec using relative ion abundance measurements by electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
Journal of Mass Spectrometry, 34(10), 1055–1062.
1999 journal article
Precise mass measurement of a double-stranded 500 base-pair (309 kDa) polymerase chain reaction product by negative ion electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry
Rapid Communications in Mass Spectrometry, 13(12), 1201–1204.
1999 journal article
Quantification of singly charged biomolecules by electrospray ionization fourier transform ion cyclotron resonance mass spectrometry utilizing an internal standard
Rapid Communications in Mass Spectrometry, 13(3), 164–171.
1998 journal article
Comprehensive nomenclature for the fragment ions produced from collisional activation of peptide nucleic acids
Rapid Communications in Mass Spectrometry, 12(12), 759–762.
1998 journal article
Heterogeneity inBacillus cereusPCR Products Detected by ESI−FTICR Mass Spectrometry
Analytical Chemistry, 70(6), 1203–1207.
1998 journal article
Mass Spectrometric Characterization of DNA for Molecular Biology Applications: Advances using MALDI and ESI
Advances in Mass Spectrometry, 14, 377–406.
1998 journal article
Nanoelectrospray mass spectrometry using non-metalized, tapered (50 → 10 μm) fused-silica capillaries
Rapid Communications in Mass Spectrometry, 12(8), 443–448.
1998 journal article
Sequencing and Characterization of Larger Oligonucleotides by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
Reviews in Analytical Chemistry, 17(1), 1–68.
1997 journal article
Application of sequential paired covariance to liquid chromatography-mass spectrometry data enhancements in both the signal-to-noise ratio and the resolution of analyte peaks in the chromatogram
Journal of Chromatography A, 771(1-2), 1–7.
1997 journal article
Improving the Microdialysis Procedure for Electrospray Ionization Mass Spectrometry of Biological Samples
Journal of Mass Spectrometry, 32(4), 425–431.
1997 journal article
Length and Base Composition of PCR-Amplified Nucleic Acids Using Mass Measurements from Electrospray Ionization Mass Spectrometry
Analytical Chemistry, 69(8), 1543–1549.
1997 journal article
Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry. Instrumentation and Applications
Journal of Chemical Education, 74(11), 1288.
1997 journal article
Molecular Architecture via Coordination: Marriage of Crown Ethers and Calixarenes with Molecular Squares, Unique Tetranuclear Metallamacrocycles from Metallacrown Ether and Metallacalixarene Complexes via Self-Assembly
Journal of the American Chemical Society, 119(22), 5163–5168.
1997 journal article
Nanoscale Tectonics: Self-Assembly, Characterization, and Chemistry of a Novel Class of Organoplatinum Square Macrocycles
Journal of the American Chemical Society, 119(48), 11611–11619.
1997 journal article
Transition-Metal-Mediated Rational Design and Self-Assembly of Chiral, Nanoscale Supramolecular Polyhedra with UniqueTSymmetry†
Organometallics, 16(14), 3094–3096.
1996 journal article
A Quantitative Study ofin vitroHepatic Metabolism of Tacrolimus (FK506) Using Secondary Ion and Matrix-assisted Laser Desorption/Ionization Mass Spectrometry
Rapid Communications in Mass Spectrometry, 10(10), 1215–1218.
1996 journal article
Analysis of Double-stranded Polymerase Chain Reaction Products from the Bacillus cereus Group by Electrospray Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
Rapid Communications in Mass Spectrometry, 10(1), 29–35.
1996 journal article
Characterization of PCR Products from Bacilli Using Electrospray Ionization FTICR Mass Spectrometry
Analytical Chemistry, 68(21), 3705–3712.
1996 journal article
Charge-state reduction with improved signal intensity of oligonucleotides in electrospray ionization mass spectrometry
Journal of the American Society for Mass Spectrometry, 7(8), 697–706.
1996 journal article
Design and Self-Assembly of Nanoscale Organoplatinum Macrocycles
Journal of the American Chemical Society, 118(36), 8731–8732.
1996 journal article
Direct quantification of cocaine in urine by time-of-flight mass spectrometry
Fresenius' Journal of Analytical Chemistry, 354(1), 103–110.
1996 journal article
Enhancement of ion intensity in time-of-flight secondary-ionization mass spectrometry
Journal of the American Society for Mass Spectrometry, 7(5), 467–472.
1996 journal article
Important Aspects concerning the Quantification of Biomolecules by Time-of-Flight Secondary-Ion Mass Spectrometry
Applied Spectroscopy, 50(2), 161–166.
1995 journal article
Application of Sequential Paired Covariance to Capillary Electrophoresis Electrospray Ionization Time-of-Flight Mass Spectrometry: Unraveling the Signal from the Noise in the Electropherogram
Analytical Chemistry, 67(23), 4371–4375.
1995 journal article
Application of secondary ion and matrix-assisted laser desorption-ionization time-of-flight mass spectrometry for the quantitative analysis of biological molecules
Mass Spectrometry Reviews, 14(6), 383–429.
1995 journal article
Simultaneous quantification of cyclosporin A and its major metabolites by time-of-flight secondary-ion mass spectrometry and matrix-assisted laser desorption/ionization mass spectrometry utilizing data analysis techniques: Comparison with high-performance liquid chromatography
Journal of Mass Spectrometry, 30(10), 1469–1479.
1994 journal article
Characterization of Polystyrene on Etched Silver Using Ion Scattering and X-ray Photoelectron Spectroscopy: Correlation of Secondary Ion Yield in Time-of-Flight SIMS with Surface Coverage
The Journal of Physical Chemistry, 98(44), 11570–11575.
1994 journal article
Quantitative Measurement of Cyclosporin A in Blood by Time-of-Flight Mass Spectrometry
Analytical Chemistry, 66(14), 2362–2368.
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