Works (17)

Updated: April 11th, 2023 10:13

2022 article

Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli

Mahmud, B., Wallace, M. A., Reske, K. A., Alvarado, K., Muenks, C. E., Rasmussen, D. A., … Dantas, G. (2022, August 22). (C. W. Marshall, Ed.). MSYSTEMS, Vol. 8.

By: B. Mahmud*, M. Wallace*, K. Reske*, K. Alvarado*, C. Muenks*, D. Rasmussen, C. Burnham*, C. Lanzas, E. Dubberke*, G. Dantas*

Ed(s): C. Marshall

author keywords: Escherichia coli; beta-lactamases; plasmid-mediated resistance
Sources: Web Of Science, ORCID
Added: August 24, 2022

2022 article

Plasmodium falciparum Genetic Diversity in Coincident Human and Mosquito Hosts

Lapp, Z., Obala, A. A., Abel, L., Rasmussen, D. A., Sumner, K. M., Freedman, E., … Prudhomme-O'Meara, W. (2022, September 8). MBIO.

By: Z. Lapp*, A. Obala*, L. Abel*, D. Rasmussen, K. Sumner*, E. Freedman*, S. Taylor*, W. Prudhomme-O'Meara*

author keywords: malaria; Plasmodium falciparum; transmission; comparative genomics; genetic diversity
Source: Web Of Science
Added: September 26, 2022

2022 journal article

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination


By: F. Guo, I. Carbone & D. Rasmussen

Sources: Web Of Science, ORCID
Added: March 6, 2023

2022 journal article

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

SCIENCE, 378(6615), 42-+.

By: H. Tegally*, J. San*, M. Cotten*, M. Moir*, B. Tegomoh*, G. Mboowa*, D. Martin*, C. Baxter* ...

Source: Web Of Science
Added: February 13, 2023

2021 journal article

A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa

SCIENCE, 374(6566), 423-+.

By: E. Wilkinson*, M. Giovanetti*, H. Tegally*, J. San*, R. Lessells*, D. Cuadros*, D. Martin*, D. Rasmussen ...

Source: Web Of Science
Added: November 15, 2021

2021 journal article

Decomposing the sources of SARS-CoV-2 fitness variation in the United States


By: L. Kepler, M. Hamins-Puertolas n & D. Rasmussen

author keywords: SARS-CoV-2; transmission fitness; phylodynamics; birth-death model
Source: Web Of Science
Added: March 7, 2022

2021 journal article

HIV-1 molecular diversity in Brazil unveiled by 10 years of sampling by the national genotyping network


By: T. Graf*, G. Bello*, P. Andrade*, I. Arantes*, J. Pereira*, A. Silva*, R. Veiga*, D. Mariani* ...

Source: Web Of Science
Added: August 30, 2021

2021 journal article

Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen


By: D. Dawson, D. Rasmussen, X. Peng & C. Lanzas

author keywords: environmental transmission; disease transmission modelling; phylodynamics; whole-genome sequencing
Sources: Web Of Science, ORCID
Added: June 9, 2021

2021 journal article

Phylogeographic Approaches to Characterize the Emergence of Plant Pathogens

PHYTOPATHOLOGY, 111(1), 68–77.

By: D. Rasmussen & N. Grunwald*

author keywords: coalescent theory; evolution; genomics; population biology; population genetics; phylogenetics; techniques
Source: Web Of Science
Added: March 15, 2021

2020 review

Aphid Transmission ofPotyvirus: The Largest Plant-Infecting RNA Virus Genus

[Review of ]. VIRUSES-BASEL, 12(7).

By: K. Gadhave, S. Gautam*, D. Rasmussen & R. Srinivasan*

author keywords: potyviruses; vector-virus interactions; aphid transmission; plant viruses; insect vectors
Source: Web Of Science
Added: August 24, 2020

2020 journal article

Evolutionary dynamics of Tomato spotted wilt virus within and between alternate plant hosts and thrips


By: C. Ruark-Seward n, B. Bonville n, G. Kennedy & D. Rasmussen

Source: Web Of Science
Added: November 2, 2020

2019 journal article

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis


Source: Web Of Science
Added: May 28, 2019

2019 journal article

Coupling adaptive molecular evolution to phylodynamics using fittness-dependent birth-death models


By: D. Rasmussen & T. Stadler*

Source: Web Of Science
Added: September 23, 2019

2019 article

Entry of bunyaviruses into plants and vectors

VIRUS ENTRY, Vol. 104, pp. 65–96.

By: Y. Chen, M. Dessau*, D. Rotenberg, D. Rasmussen & A. Whitfield

Sources: Web Of Science, ORCID
Added: October 21, 2019

2019 journal article

Estimating Epidemic Incidence and Prevalence from Genomic Data


author keywords: phylodynamics; particle filter; epidemiology; Bayesian phylogenetics
Source: Web Of Science
Added: November 18, 2019

2018 journal article

MASCOT: parameter and state inference under the marginal structured coalescent approximation

BIOINFORMATICS, 34(22), 3843–3848.

By: N. Mueller, D. Rasmussen & T. Stadler*

Source: Web Of Science
Added: December 3, 2018

2018 journal article

Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South Africa


By: D. Rasmussen, E. Wilkinson*, A. Vandormael, F. Tanser*, D. Pillay*, T. Stadler*, T. Oliveira

author keywords: HIV; molecular epidemiology; phylodynamics; migration
Source: Web Of Science
Added: February 11, 2019