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2022 article
Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli
Mahmud, B., Wallace, M. A., Reske, K. A., Alvarado, K., Muenks, C. E., Rasmussen, D. A., … Dantas, G. (2022, August 22). (C. W. Marshall, Ed.). MSYSTEMS, Vol. 8.
Ed(s): C. Marshall
2022 article
Plasmodium falciparum Genetic Diversity in Coincident Human and Mosquito Hosts
Lapp, Z., Obala, A. A., Abel, L., Rasmussen, D. A., Sumner, K. M., Freedman, E., … Prudhomme-O'Meara, W. (2022, September 8). MBIO.
2022 journal article
Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination
PLOS COMPUTATIONAL BIOLOGY, 18(8).
2022 journal article
The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance
SCIENCE, 378(6615), 42-+.
2021 journal article
A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa
SCIENCE, 374(6566), 423-+.
2021 journal article
Decomposing the sources of SARS-CoV-2 fitness variation in the United States
VIRUS EVOLUTION, 7(2).
2021 journal article
HIV-1 molecular diversity in Brazil unveiled by 10 years of sampling by the national genotyping network
SCIENTIFIC REPORTS, 11(1).
2021 journal article
Inferring environmental transmission using phylodynamics: a case-study using simulated evolution of an enteric pathogen
JOURNAL OF THE ROYAL SOCIETY INTERFACE, 18(179).
2021 journal article
Phylogeographic Approaches to Characterize the Emergence of Plant Pathogens
PHYTOPATHOLOGY, 111(1), 68–77.
2020 review
Aphid Transmission ofPotyvirus: The Largest Plant-Infecting RNA Virus Genus
[Review of ]. VIRUSES-BASEL, 12(7).
2020 journal article
Evolutionary dynamics of Tomato spotted wilt virus within and between alternate plant hosts and thrips
SCIENTIFIC REPORTS, 10(1).
2019 journal article
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
PLOS COMPUTATIONAL BIOLOGY, 15(4).
2019 journal article
Coupling adaptive molecular evolution to phylodynamics using fittness-dependent birth-death models
ELIFE, 8.
2019 article
Entry of bunyaviruses into plants and vectors
VIRUS ENTRY, Vol. 104, pp. 65–96.
2019 journal article
Estimating Epidemic Incidence and Prevalence from Genomic Data
MOLECULAR BIOLOGY AND EVOLUTION, 36(8), 1804–1816.
2018 journal article
MASCOT: parameter and state inference under the marginal structured coalescent approximation
BIOINFORMATICS, 34(22), 3843–3848.
2018 journal article
Tracking external introductions of HIV using phylodynamics reveals a major source of infections in rural KwaZulu-Natal, South Africa
VIRUS EVOLUTION, 4(2).