Dilip Raj Panthee

Application of Molecular Markers in Crop Improvement and Beyond

Panthee, D. R. (2023, August). AGRONOMY-BASEL, Vol. 13.

Molecular mapping of quantitative trait loci for resistance to early blight in tomatoes

FRONTIERS IN PLANT SCIENCE, 14.

Variable Yield Responses among Grafted and Nongrafted Late blight-resistant Tomato (Solanum lycopersicum L.) Hybrids in North Carolina

HORTSCIENCE, 58(8), 943–948.

Coordinated transcriptional regulation of the carotenoid biosynthesis contributes to fruit lycopene content in high-lycopene tomato genotypes

Horticulture Research, 9.

Four bottlenecks restrict colonization and invasion by the pathogen Ralstonia solanacearum in resistant tomato (vol 71, pg 2157, 2020)

Planas-Marques, M., Kressin, J. P., Kashyap, A., Panthee, D. R., Louws, F. J., Coll, N. S., & Valls, M. (2022, March 29). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 3.

Genomic Tools for Improving Tomato to Biotic Stress Resistance

In C. Kole (Ed.), Genomic Designing for Biotic Stress Resistant Vegetable Crops (pp. 1–35).

RNA-Seq analysis of tomato genotypes resistant to Bacterial spot (Xanthomonas perforans) race T4

International Horticulture Congress. Presented at the International Horticulture Congress, Angers, France.

Screening of tomato lines for late blight resistance

HortScience, 57(9S), S114.

Tomato -Vegetable cultivar descriptions for North America, List 28

HortScience, 57(8), 949–1040.

‘Mountain Bebe’: Hybrid Grape Tomato and Its Parents NC 7 Grape and NC 8 Grape

HortScience, 57(3), 444–446.

Development of codominant SCAR markers to detect the Pto , Tm2 ^{2 , I3 and Sw5 genes in tomato ( Solanum lycopersicum )}

Development of codominant SCAR markers to detect the Pto , . Plant Breeding, 140(2), 342–348.

Evaluation of tomato breeding lines for Bacterial speck resistance

HortScience, 56(9S), S127.

Identification of potential rootstocks for tomato grafting from bacterial wilt screening trials in North Carolina

Acta Horticulturae, 1302(1302), 169–176.

Next-generation sequencing-based bulked segregant analysis without sequencing the parental genomes

G3 Genes|Genomes|Genetics, 12(2).

‘Mountain Regina’: Multiple Disease Resistant Fresh-market Hybrid Tomato and Its Parents, NC 1LF and NC 2LF

HortScience, 56(6), 736–738.

Advances and Challenges in Bacterial Spot Resistance Breeding in Tomato (Solanum lycopersicum L.)

International Journal of Molecular Sciences, 21(5), 1734.

Cereal crop improvement for food sufficiency

In D. P. Rasali, P. B. Bhandari, U. Karki, M. N. Parajulee, R. N. Acharya, & R. Adhikari (Eds.), Principles and Practices of Food Security: Sustainable, Sufficient, and Food Food for Healthy Living in Nepal (pp. 166–197). Association of Nepalese Agricultural Professionals in Americas (NAPA).

Comparison of tomato genotypes grown under conventional and organic production systems for nutrient composition and fruit quality

HortScience, 55(9S), S414–S415.

Current status of fruits and vegetables and their improvements

In D. P. Rasali, P. B. Bhandari, U. Karki, M. N. Parajulee, R. N. Acharya, & R. Adhikari (Eds.), Principles and Practices of Food Security: Sustainable, Sufficient, and Food for Healthy Living in Nepal (pp. 245–269). Association of Nepalese Agricultural Professionals in Americas (NAPA).

Detection of Quantitative Trait Loci (QTL) Associated with the Fruit Morphology of Tomato

Genes, 11(10), 1117.

Differential gene expression of bacterial wilt (Ralstonia solanacearum) resistance in tomatoes

HortScience, 55(9S), S192–S193.

Improving heat stress tolerance in tomato

CABI Reviews, 2020.

PyBSASeq: a simple and effective algorithm for bulked segregant analysis with whole-genome sequencing data

BMC BIOINFORMATICS, 21(1).

Screening tomato breeding lines for Bacterial wilt resistance in NC

HortScience, 55(9S), S108.

The impact of COVID-19 on agriculture research

In B. Sharma & A. P. Adhikari (Eds.), COVID-19 pandemic and Nepal: Issues and perspectives (pp. 52–60). Asta-Ja.

Transcriptome-Based Analysis of Tomato Genotypes Resistant to Bacterial Spot (Xanthomonas perforans) Race T4

International Journal of Molecular Sciences, 21(11), 4070.

‘Mountain Crown’: Late Blight and Tomato mosaic virus-resistant Plum Hybrid Tomato and Its Parent, NC 1 Plum

HortScience, 55(12), 2056–2057.

Development of co-dominant SCAR markers for detection of the Pto, Tm-22, I-3, and Sw5 genes in tomato

Tomato Breeders Round Table Meeting. Presented at the Tomato Breeders Round Table Meeting, Clearwater, FL.

Four bottlenecks restrict colonization and invasion by the pathogen Ralstonia solanacearum in resistant tomato

Journal of Experimental Botany, 71(6), 2157–2171.

Identification of the key carotenoid biosynthesis pathway genes impacting tomato fruit lycopene content

National Association of Plant Breeders Meeting. Presented at the National Association of Plant Breeders Meeting, Callaway Gardens – Pine Mountain, GA.

Mapping quantitative trait loci (QTL) associated with flavonoid in tomato (Solanum lycopersicum L.)

National Association of Plant Breeders Meeting. Presented at the National Association of Plant Breeders Meeting, Callaway Gardens – Pine Mountain, GA.

New tomato hybrids improved for fruit quality and disease resistance at NC State University

Tomato Breeders Round Table Meeting. Presented at the Tomato Breeders Round Table Meeting, Clearwater, FL.

Phenotypic and Genetic Diversity of Xanthomonas perforans Populations from Tomato in North Carolina

PHYTOPATHOLOGY, 109(9), 1533–1543.

Screening tomato (Solanum lycopersicum L.) for heat stress tolerance

HortScience, 54:S12-S12.

Structural restriction to Ralstonia solanacearum colonization and invasion in resistant tomato varieties

Molecular Plant-Microbe Interactions, 32, 130–131.

Understanding genetic resistance to bacterial wilt in tomatoes

National Association of Plant Breeders Meeting. Presented at the National Association of Plant Breeders Meeting, Callaway Gardens – Pine Mountain, GA.

4-Dimensional colonization dynamics of the grafted tomato Bacterial wilt pathosystem and their implication for resistance selection

Tomato Breeders Round Table Meeting. Presented at the Tomato Breeders Round Table Meeting, Wooster, OH.

Bacterial spot of tomato: Pathogen story and our efforts of tomato improvement in NC

Tomato Breeders Round Table Meeting. Presented at the Tomato Breeders Round Table Meeting, Wooster, OH.

Comparison of Tomato Genotypes Grown Under Conventional and Organic Production System for Nutrient Composition and Fruit Quality

HortScience, 53:S93-S94.

Diversity among Modern Tomato Genotypes at Different Levels in Fresh-Market Breeding

INTERNATIONAL JOURNAL OF AGRONOMY, 2018.

Efforts on Breeding for Bacterial Speck Resistance in Tomato in North Carolina

33rd Tomato Disease Workshop. Presented at the 33rd Tomato Disease Workshop, Chincoteague Island, VA.

Filter paper-based spin column method for cost-efficient DNA or RNA purification

PLOS ONE, 13(12).

Genetic and phenotypic diversity of tomato germplasm for bacterial wilt (Ralstonia solanacearum) resistance

Annual Conference, Sol Genomics. Presented at the Annual Conference, Sol Genomics, Chiangmai, Thailand.

Heritability of Flower Number and Fruit Set under Heat Stress in Tomato

HortScience, 53(9), 1294–1299.

Inheritance and Segregation Analysis of Anthocyanin Content in Backcross Population of Tomato (Solanum lycopersicum L.)

[Abstract]. HortScience, 53(9), S379.

Integrating grafting and emerging products to manage soilborne diseases of tomato

Acta Horticulturae, 1207(1207), 249–254.

Mapping quantitative trait loci controlling fruit morphology and color parameters in intra-specific RIL population of tomato

[Abstract]. HortScience, 53(9).

Molecular mapping of quantitative trait loci (QTL) for fruit quality in heirloom tomato background

Panthee, D. R. (2018, September 30). Presented at the Annual Conference, Sol Genomics, Chiangmai, Thailand.

Tomato improvement for fruit quality and disease resistance at NC State University

Tomato Breeders Round Table Meeting. Presented at the Tomato Breeders Round Table Meeting, Wooster, OH.

A novel plant DNA extraction method using filter paper-based 96-well spin plate

Planta, 246(3), 579–584.

Characterizing pathogen phenotypes and diversity to inform management decisions to control bacterial spot of tomato in North Carolina

[Abstract]. HortScience, 52(9), S410–S411.

Current Status of Early Blight Resistance in Tomato: An Update

International Journal of Molecular Sciences, 18(10), 2019.

Developing disease-resistant tomato varieties

Evaluation of bacterial speck resistance in tomato breeding

[Abstract]. HortScience, 52(9), S357–S358.

Mapping Quantitative Trait Loci (QTL) for Resistance to Late Blight in Tomato

International Journal of Molecular Sciences, 18(7), 1589.

Mapping quantitative trait loci (QTL) for resistance to late blight in tomato

International Journal of Molecular Sciences, 18(7).

Resistance to Xanthomonas perforans race T4 causing bacterial spot in tomato breeding lines

Plant Pathology, 66(7), 1103–1109.

Assessment of tomato genotypes for resistance to bacterial spot

Annual Conference, Sol Genomics. Presented at the Annual Conference, Sol Genomics, Davis, CA.

Bacterial wilt tolerance improvement in tomato

46th Tomato Breeders Round Table Meeting. Presented at the 46th Tomato Breeders Round Table Meeting, Santo Domingo, Dominican Republic.

Current status of grafted management of tomato bacterial wilt in the NC Mountain region

31st Tomato Disease Workshop. Presented at the 31st Tomato Disease Workshop, Hendersonville, North Carolina.

Differential response of tomato genotypes to Xanthomonas-specific pathogen-associated molecular patterns and correlation with bacterial spot (Xanthomonas perforans) resistance

Horticulture Research, 3.

Diversity analysis of tomato genotypes based on morphological traits with commercial breeding significance for fresh market production in eastern USA

Australian Journal of Crop Science, 10(8), 1098–1103.

Genetic diversity, cytogenetics, and biomass yields among taxa of giant reeds (Arundo species)

Journal of the American Society for Horticultural Science, 141(3), 256–263.

Genetic fruit weight regulation in 3 distinct tomato (Solanum lycopersicum L.) market classes

Plant and Animal Genome XXIV Conference. Presented at the Plant and Animal Genome XXIV Conference, San Diego, CA. USA.

Heritability analysis for heat stress tolerance in tomato (Solanum lycopersicum L.)

[Abstract]. HortScience, 51(9), S191.

Heritability analysis for heat stress tolerance in tomato (solanum lycopersicum l)

HortScience, 51, S191.

Occurrence of Copper and Streptomycin resistant Xanthomonas spp. in tomato in North Carolina

Annual Meeting. National Association of Plant Breeders. Presented at the Annual Meeting. National Association of Plant Breeders, Raleigh, NC.

Tomato rootstock resistance to bacterial wilt in the Mountain region of North Carolina

6th International Bacterial Wilt Symposium. Presented at the 6th International Bacterial Wilt Symposium, Toulouse, France.

Comparison of tomato genotypes grown under conventional and organic production system for nutrient composition

HortScience, 50:9, S300–S301.

Diallel Analysis for Lycopene Content in the Hybrids Derived from Different Colored Parents in Tomato

American Journal of Plant Sciences, 06(09), 1483–1492.

Differential expression analysis of a select list of genes in susceptible and resistant heirloom tomatoes with respect to Pseudomonas syringae pv. tomato

EUROPEAN JOURNAL OF PLANT PATHOLOGY, 142(4), 653–663.

Molecular Markers Associated with Ph-3 Gene Conferring Late Blight Resistance in Tomato

American Journal of Plant Sciences, 06(13), 2144–2150.

Molecular Markers for Septoria Leaf Spot (Septoria lycopersicii Speg.) Resistance in Tomato (Solanum lycopersicum L.)

Nepal Journal of Biotechnology, 3(1), 40–47.

Progeny of Selfed Plants from Tomato Breeding Line ‘NC1 Grape’ Overexpressing Mannitol Dehydrogenase (MTD) Have Increased Resistance to the Early Blight Fungus, Alternaria solani

Plant Health Progress, 16(3), 115–117.

Role of Plant breeding and biotechnology in sustainable agriculture development in Nepal

In A. P. Adhikari & G. P. Dahal (Eds.), Sustainable Livelihood System in Nepal: Principles, Practices and Prospects (pp. 65–86). Kathmandu, Nepal: IUCN-CFFN.

Tomato Plants Overexpressing a Celery Mannitol Dehydrogenase (MTD) Have Decreased Susceptibility to Botrytis cinerea

American Journal of Plant Sciences, 06(08), 1116–1125.

Tomato rootstock resistance to bacterial wilt as modulated by grafting and NC regional isolates

SE Winter Vegetable Conference. Presented at the SE Winter Vegetable Conference, Savannah, GA.

'Mountain Lion': A large-fruited, extended shelf-life hybrid tomato and its parent line, NC 2rinEC

HortScience, 49(11), 1461–1462.

'Mountain Rouge': A pink-fruited, heirloom-type hybrid tomato and its parent line NC 161L

HortScience, 49(11), 1463–1464.

Combining fruit quality and late blight resistance in tomato

2014 ASHS Annual Conference. Presented at the 2014 ASHS Annual Conference, Orlando, FL.

Genetic diversity, cytogenetics, and biomass yields among Arundo species and accessions (Arundineae)

ASHS Annual Meeting. Presented at the ASHS Annual Meeting, Orlando, FL.

MICROARRAY ANALYSIS REVEALS SELENIUM DOWN-REGULATES GLUCOSINOLATE BIOSYNTHESIS IN ARABIDOPSIS SHOOTS

Acta Horticulturae, 6(1040), 277–279.

Mapping Bacterial wilt Resistance in a F2 Population of Tomatoes Derived from CLN1466EA X NC84173

45th Tomato Breeders Round Table Meeting. Presented at the 45th Tomato Breeders Round Table Meeting, Mountain Horticultural Crops Research &Extension Center, Mills River, NC, USA.

Mapping QTL associated with late blight resistance

45th Tomato Breeders Round Table Meeting. Presented at the 45th Tomato Breeders Round Table Meeting, Mountain Horticultural Crops Research & Extension Center, Mills River, USA.

Microarray analysis reveals selenium down-regulates glucisonolate biosynthesis in Arabidopsis shoots

[Abstract]. FAV HEALTH 2009. 3rd International Symposium on Human Health Effects of Fruits and Vegetables, 192.

Natural Variation for Responsiveness to flg22, flgII-28, and csp22 and Pseudomonas syringae pv. tomato in Heirloom Tomatoes

PLOS ONE, 9(9).

Overexpression of Celery Mannitol Dehydrogenase (MTD) in Tomato Increases Resistance to the Mannitol Secreting Fungal Pathogen Botrytis cinerea

[Abstract]. HortScience, 49, S22–S22.

Screening for bacterial spot resistance

45th Tomato Breeders Round Table Meeting. Presented at the 45th Tomato Breeders Round Table Meeting, Mountain Horticultural Crops Research &Extension Center, Mills River, NC, USA.

Screening of tomato (Solanum lycopersicum L.) lines for Bacterial spot (Xanthomonas sp) resistance

[Abstract]. HortScience, 49, S244–S244.

Screening of tomato (Solanum lycopersicum L.) lines for bacterial spot (Xanthomonas spp.) resistance

2014 ASHS Annual Conference. Presented at the 2014 ASHS Annual Conference, Orlando, FL.

The influence of temperature on Bacterial Wilt disease (Ralstonia solanacearum Smith), especially as it pertains to tomato (Solanum lycopersicum L.) from a historical perspective

45th Tomato Breeders Round Table Meeting. Presented at the 45th Tomato Breeders Round Table Meeting, Mountain Horticultural Crops Research & Extension Center, Mills River, NC, USA.

Tomato rootstock resistance to Bacterial wilt (Ralstonia solanacearum): Effects of genotype and cold stress on epidemic profile

2014 ASHS Annual Conference. Presented at the 2014 ASHS Annual Conference, Orlando, FL.

'Mountain Honey' hybrid grape tomato and its parent NC 6 Grape breeding line

HortScience, 48(9), 1192–1194.

'Mountain Vineyard' hybrid grape tomato and its parents: NC 4 Grape and NC 5 Grape tomato breeding lines

HortScience, 48(9), 1189–1191.

A reexamination of molecular markers for use in marker-assisted breeding in tomato (Retraction of vol 184, pg 165, 2012)

Euphytica, Vol. 194, pp. 149–149.

Evaluating bacterial wilt resistance of tomato rootstocks in North Carolina

Phytopathology, 103, 134.

Evaluation of tomato accessions for flavour and flavour-contributing components

PLANT GENETIC RESOURCES-CHARACTERIZATION AND UTILIZATION, 11(2), 106–113.

First Report of Potato spindle tuber viroid Naturally Infecting Greenhouse Tomatoes in North Carolina

Ling, K.-S., Li, R., Panthee, D. R., & Gardner, R. G. (2013, January). PLANT DISEASE, Vol. 97, pp. 148–149.

Genotype and environmental interaction for fruit quality traits in vintage tomato varieties

EUPHYTICA, 193(2), 169–182.

Heirloom tomatoes show differential sensitivity to Flg22, Flg28, and Csp22 and a field isolate of Pseudomonas syringae pv. tomato

The 27th Annual Retreat, Plant Molecular Biology Consortium. Presented at the 27th Annual Retreat, Plant Molecular Biology Consortium, Asheville, NC.

Lycopene Estimation in Tomato Lines Using Infrared Absorbance and Tomato Analyzer

International Journal of Vegetable Science, 19(3), 240–255.

New molecular markers associated with the Sw-5 gene conferring resistance to Tomato spotted wilt virus in tomato

JOURNAL OF HORTICULTURAL SCIENCE & BIOTECHNOLOGY, 88(2), 129–134.

Novel molecular marker associated with Tm2(a) gene conferring resistance to tomato mosaic virus in tomato

PLANT BREEDING, 132(4), 413–416.

QTL analysis for early blight resistance in tomato

ASHS Annual Meetings. Presented at the Annual Meetings, ASHS, Palm Spring, CA.

RAPD Markers Linked to Late Blight Resistance in Tomato

Nepal Journal of Science and Technology, 14(1), 1–14.

Retraction Note to: A reexamination of molecular markers for use in marker-assisted breeding in tomato

Euphytica, 194(1), 149–149.

'Mountain Magic': An early blight and late blight-resistant specialty type F-1 hybrid tomato

HortScience, 47(2), 299–300.

A reexamination of molecular markers for use in marker-assisted breeding in tomato (Retracted article. See vol. 194, pg. 149, 2013)

Panthee, D. R., & Foolad, M. R. (2012, March). EUPHYTICA, Vol. 184, pp. 165–179.

Diversity Analysis of Tomato Cultivars Based on Coefficient of Parentage and RAPD Molecular Markers

Journal of Crop Improvement, 26(2), 177–196.

Evaluation of tomato germplasm for flavor and flavor-contributing components

ASHS Annual Meetings. Presented at the Annual Meetings, ASHS, Miami, FL.

High-Density SNP Genotyping of Tomato (Solanum lycopersicum L.) Reveals Patterns of Genetic Variation Due to Breeding

PLOS ONE, 7(9).

Identification of Potato spindle tuber viroid naturally infecting greenhouse tomatoes in North Carolina and its potential in seed transmission

27th Annual Tomato Disease Workshop. Presented at the 27th Annual Tomato Disease Workshop, Wooster, OH.

Magnitude of Genotype x Environment Interactions Affecting Tomato Fruit Quality

HORTSCIENCE, 47(6), 721–726.

Marker-Assisted Selection in Tomato Breeding

[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 31(2), 93–123.

Tomato spotted wilt virus-resistant fresh-market tomato breeding lines: NC 58S, NC 123S, NC 127S, and NC 132S

HortScience, 47(4), 531–532.

'Mountain Majesty': A tomato spotted wilt virus-resistant fresh-market hybrid tomato and Its parents NC 714 and NC 1CS

HortScience, 46(9), 1321–1323.

Breeding tomato for pigments

43rd Tomato Breeders’ Round Table Meeting. Presented at the 43rd Tomato Breeders’ Round Table Meeting, Ithaca, NY.

Diversity Analysis of Arabidopsis thaliana (L.) Heynh Ecotypes for Glucosinolates in Shoots and Seeds

HortScience, 46(7), 968–974.

GGE Biplot Analysis of Tomato F1Hybrids Evaluated Across Years for Marketable Fruit Yield

Journal of Crop Improvement, 25(5), 488–496.

Genetic Improvement of Fresh Market Tomatoes for Yield and Fruit Quality Over 35 Years in North Carolina: A Review

International Journal of Vegetable Science, 17(3), 259–273.

Genotype, media and temperature influence regeneration of tomato cultivars from anthers

[Abstract]. Vitro Cellular & Developmental Biology-Animal, 47, S65.

Identification of molecular markers for Sw-5 gene of tomato spotted wilt virus resistance

American Journal of Biotechnology and Molecular Sciences, 1, 8–16.

Identification of useful source of bacterial wilt resistance in tomato

26th Annual Tomato Disease Workshop. Presented at the 26th Annual Tomato Disease Workshop, Ithaca, NY.

Information Theory and Multivariate Techniques for Analyzing DNA Sequence Data: An Example from Tomato Genes

Nepal Journal of Biotechnology, 1(1), 1–9.

Lycopene content profiling in tomato lines derived from diverse genetic background by colorimetry and infra-red absorbance methods

[Abstract]. Hortscience, 46(9), S183–S194.

Magnitude of genotype x environment interactions affecting tomato fruit morphology

Plant Biology and Botany Annual Meeting. Abstract presented at the Plant Biology and Botany Annual Meeting, Minneapolis, MN.

Molecular Markers for Tm-2 Alleles of Tomato Mosaic Virus Resistance in Tomato

American Journal of Plant Sciences, 02(02), 180–189.

Phenotypic and molecular variation in 44 vintage tomato varieties

43rd Tomato Breeders’ Round Table Meeting. Presented at the 43rd Tomato Breeders’ Round Table Meeting, Ithaca, NY.

Selenium Regulates Gene Expression for Glucosinolate and Carotenoid Biosynthesis in Arabidopsis

Journal of the American Society for Horticultural Science, 136(1), 23–34.

'Mountain Merit': A late blight-resistant large-fruited tomato hybrid

HortScience, 45(10), 1547–1548.

'Plum Regal' fresh-market plum tomato hybrid and Its parents, NC 25P and NC 30P

HortScience, 45(5), 824–825.

Arabidopsis

Arabidopsis Genome Initiative

Diversity in a collection of heirloom tomato varieties

[Abstract]. HortScience, 45(8), S145.

Evaluation of late blight on tomato cultivars grown in the field, 2009

Plant Disease Management Reports, 4, 126.

Genomics of Fungal Disease Resistance in Tomato

CURRENT GENOMICS, 11(1), 30–39.