Deyu Xie

A telomere-to-telomere reference genome provides genetic insight into the pentacyclic triterpenoid biosynthesis in Chaenomeles speciosa

HORTICULTURE RESEARCH, 10(10).

Metabolic engineering of the anthocyanin biosynthetic pathway in Artemisia annua and relation to the expression of the artemisinin biosynthetic pathway

PLANTA, 257(3).

Molecular understanding of anthocyanin biosynthesis activated by PAP1 and regulated by 2, 4-dichlorophenoxyacetic acid in engineered red Artemisia annua cells

PLANTA, 258(4).

Molecular understanding of anthocyanin biosynthesis activated by PAP1 in engineered redArtemisia annuacells and regulation of 2, 4-dichlorophenoxyacetic acid

Dong, Y., Li, M., Cruz, B., Ye, E., Zhu, Y., Li, L., … Xie, D.-Y. (2023, March 20).

Unrelated to phenylalanine: Feeding studies provide new insight into salicylic acid biosynthesis

Tan, J., He, P., & Xie, D.-Y. (2023, April). JOURNAL OF INTEGRATIVE PLANT BIOLOGY, Vol. 65, pp. 879–880.

Flavonols and dihydroflavonols inhibit the main protease activity of SARS-CoV-2 and the replication of human coronavirus 229E

VIROLOGY, 571, 21–33.

A de novo regulation design shows an effectiveness in altering plant secondary metabolism

JOURNAL OF ADVANCED RESEARCH, 37, 43–60.

Alternative splicing of CsJAZ1 negatively regulates flavan-3-ol biosynthesis in tea plants

Zhu, J., Yan, X., Liu, S., Xia, X., An, Y., Xu, Q., … Wei, C. (2022, March 4). PLANT JOURNAL, Vol. 1.

Anthocyanins from muscadine (Vitis rotundifolia) grape fruit

CURRENT PLANT BIOLOGY, 30.

Insights into acylation mechanisms: co-expression of serine carboxypeptidase-like acyltransferases and their non-catalytic companion paralogs

Yao, S., Liu, Y., Zhuang, J., Zhao, Y., Dai, X., Jiang, C., … Xia, T. (2022, May 7). PLANT JOURNAL, Vol. 5.

Molecular and biochemical characterization of two 4-coumarate: CoA ligase genes in tea plant (Camellia sinensis)

Li, M., Guo, L., Wang, Y., Li, Y., Jiang, X., Liu, Y., … Xia, T. (2022, May 12). PLANT MOLECULAR BIOLOGY, Vol. 109.

Transcriptional and Metabolic Characterization of Feeding Ramie Growth Enhanced by a Combined Application of Gibberellin and Ethrel

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23(19).

Flavonols and dihydroflavonols inhibit the main protease activity of SARS-CoV-2 and the replication of human coronavirus 229E

Zhu, Y., Scholle, F., Kisthardt, S. C., & Xie, D.-Y. (2021, July 2). [], Vol. 7.

Molecular and Biochemical Characterization of Two 4-Coumarate: Coa Ligase Genes in Tea Plant (Camellia Sinensis)

Li, M., Guo, L., Wang, Y., Li, Y., Jiang, X., Liu, Y., … Xia, T. (2021, September 21).

Comparative transcriptomics of stem bark reveals genes associated with bast fiber development in Boehmeria nivea L. gaud (ramie)

BMC GENOMICS, 21(1).

Discovery and characterization of tannase genes in plants: roles in hydrolysis of tannins

NEW PHYTOLOGIST, 226(4), 1104–1116.

Docking Characterization and in vitro Inhibitory Activity of Flavan-3-ols and Dimeric Proanthocyanidins Against the Main Protease Activity of SARS-Cov-2

Frontiers in Plant Science, 11.

Functional demonstration of plant flavonoid carbocations proposed to be involved in the biosynthesis of proanthocyanidins

PLANT JOURNAL, 101(1), 18–36.

RNA-seq of aboveground sporophyte's transcriptome of Huperzia serrata and transcriptional understanding of early steps associated with huperzine biosynthesis in forest

CURRENT PLANT BIOLOGY, 24.

A polyketide synthase gene cluster associated with the sexual reproductive cycle of the banana pathogen, Pseudocercospora fijiensis

PLOS ONE, 14(7), e0220319.

Artemisinin Biosynthesis in Non-glandular Trichome Cells of Artemisia annua

Molecular Plant, 12(5), 704–714.

Creation of elite growth and development features in PAP1-programmed red Nicotiana tabacum Xanthi via overexpression of synthetic geranyl pyrophosphate synthase genes

Molecular Breeding, 39(4).

Functional characterization of Terminal Flower1 homolog in Cornus canadensis by genetic transformation

Plant Cell Reports, 38(3), 333–343.

Untargeted Metabolomics of Nicotiana tabacum Grown in United States and India Characterizes the Association of Plant Metabolomes With Natural Climate and Geography

Frontiers in Plant Science, 10.

Cloning and characterization of a monoterpene synthase gene from flowers of Camelina sativa

PLANTA, 247(2), 443–457.

Cloning and characterization of a monoterpene synthase gene from flowers of Camelina sativa (vol 247, pg 443, 2018)

Borghi, M., & Xie, D.-Y. (2018, January). PLANTA, Vol. 247, pp. 287–288.

Evaluation of Digital Image Recognition Methods for Mass Spectrometry Imaging Data Analysis

Journal of The American Society for Mass Spectrometry, 29(12), 2467–2470.

HPLC-qTOE-MS/MS-Based Profiling of Flavan-3-ols and Dimeric Proanthocyanidins in Berries of Two Muscadine Grape Hybrids FLH 13-11 and FLH 17-66

METABOLITES, 8(4).

Molecular Cloning and Functional Characterization of a Dihydroflavonol 4-Reductase from Vitis bellula

MOLECULES, 23(4).

Non-plastidial expression of a synthetic insect geranyl pyrophosphate synthase effectively increases tobacco plant biomass

JOURNAL OF PLANT PHYSIOLOGY, 221, 144–155.

Overexpression of Artemisia annua Cinnamyl Alcohol Dehydrogenase Increases Lignin and Coumarin and Reduces Artemisinin and Other Sesquiterpenes

FRONTIERS IN PLANT SCIENCE, 9.

Compartmentalized Overexpression of a Synthetic Geranyl Pyrophosphate Synthase and Its Regulation on Plant Growth and Metabolism

In Vitro Cellular & Developmental Biology - Animal, 53(Suppl. 1), 54–55.

Functional Characterization of Tea (Camellia sinensis) MYB4a Transcription Factor Using an Integrative Approach

FRONTIERS IN PLANT SCIENCE, 8.

Metabolic Characterization of the Anthocyanidin Reductase Pathway Involved in the Biosynthesis of Flavan-3-ols in Elite Shuchazao Tea (Camellia sinensis) Cultivar in the Field

Molecules, 22(12), 2241.

Metabolic characterization of the anthocyanidin reductase pathway involved in the biosynthesis of flavan-3-ols in Elite Shuchazao Tea (Camellia sinensis) cultivar in the field

Molecules, 22(12).

Metabolic engineering of anthocyanins in dark tobacco varieties

PHYSIOLOGIA PLANTARUM, 159(1), 2–12.

Overexpression and Suppression of Artemisia annua 4-Hydroxy-3-Methylbut-2-enyl Diphosphate Reductase 1 Gene (AaHDR1) Differentially Regulate Artemisinin and Terpenoid Biosynthesis

FRONTIERS IN PLANT SCIENCE, 8.

Overexpression of Populus×canescens isoprene synthase gene in Camelina sativa leads to alterations in its growth and metabolism

Journal of Plant Physiology, 215, 122–131.

Overexpression of a type-I isopentenyl pyrophosphate isomerase of Artemisia annua in the cytosol leads to high arteannuinB production and artemisinin increase

Plant Journal, 91(3), 466–479.

Red and White PAP1-controlled Arabidopsis Cells Are Dependent Upon TT8

In Vitro Cellular & Developmental Biology - Animal, 53(Supplement 1), S51–S51.

Regulation of Anthocyanin Biosynthesis in the WD40-bHLH-MYB Complex-Programmed Arabidopsis Cells

In Vitro Cellular & Developmental Biology - Animal, 53(Suppl 1), 13–13.

Analysis of two TFL1 homologs of dogwood species (Cornus L.) indicates functional conservation in control of transition to flowering

Planta, 243(5), 1129–1141.

Artemisia annua, artemisinin, and the Nobel Prize: beauty of natural products and educational significance

Xie, D.-Y. (2016, January). SCIENCE BULLETIN, Vol. 61, pp. 42–44.

Artemisinin biosynthesis in Artemisia annua and metabolic engineering: questions, challenges, and perspectives

Xie, D.-Y., Ma, D.-M., Judd, R., & Jones, A. L. (2016, December). PHYTOCHEMISTRY REVIEWS, Vol. 15, pp. 1093–1114.

Metabolic Network Based Regulation of Artemisinin Biosynthesis for Anti-malarial Medicine

In Vitro Cellular & Developmental Biology - Plant, 52(Supplement), S24.

Ontogenetic characterization of sporangium and spore of Huperzia serrata: an anti-aging disease fern

BOTANICAL STUDIES, 57(1).

Overexpression of a synthetic insect-plant geranyl pyrophosphate synthase gene in Camelina sativa alters plant growth and terpene biosynthesis

Planta, 244(1), 215–230.

Overexpression of a synthetic insect–plant geranyl pyrophosphate synthase gene in Camelina sativa alters plant growth and terpene biosynthesis

Planta, 244(1), 215–230.

Salt stress induces differential regulation of the phenylpropanoid pathway in Olea europaea cultivars Frantoio (salt-tolerant) and Leccino (salt-sensitive)

Journal of Plant Physiology, 204, 8–15.

Tissue-specific production of limonene in Camelina sativa with the Arabidopsis promoters of genes BANYULS and FRUITFULL

PLANTA, 243(2), 549–561.

A Genome-Wide Scenario of Terpene Pathways in Self-pollinated Artemisia annua

MOLECULAR PLANT, 8(11), 1580–1598.

A photorespiratory bypass increases plant growth and seed yield in biofuel crop Camelina sativa

BIOTECHNOLOGY FOR BIOFUELS, 8(1).

Enhanced diversity and aflatoxigenicity in interspecific hybrids ofAspergillus flavusandAspergillus parasiticus

Molecular Ecology, 24(8), 1889–1909.

Functional characterization of an anthocyanidin reductase gene from the fibers of upland cotton (Gossypium hirsutum)

PLANTA, 241(5), 1075–1089.

Biosynthesis and Metabolic Engineering of Anthocyanins in Arabidopsis thaliana

Recent Patents on Biotechnology, 8(1), 47–60.

Molecular cloning and functional characterization of the anthocyanidin reductase gene from Vitis bellula

PLANTA, 240(2), 381–398.

Regulation of anthocyanin biosynthesis in Arabidopsis thaliana red pap1-D cells metabolically programmed by auxins

PLANTA, 239(4), 765–781.

Characterization of Flavan-3-ols and Expression of MYB and Late Pathway Genes Involved in Proanthocyanidin Biosynthesis in Foliage of Vitis bellula

Metabolites, 3(1), 185–203.

Efficient Somatic Embryogenesis and Organogenesis of Self-Pollination Artemisia annua Progeny and Artemisinin Formation in Regenerated Plants

American Journal of Plant Sciences, 04(11), 2206–2217.

Mechanisms of Metabolic Programming Toward Anthocyanin Biosynthesis in Cultured Red Arabidopsis Cells

In Vitro Cellular & Developmental Biology - Plant, 49(4), 484–485.

Plant regeneration and genetic transformation of C. canadensis: a non-model plant appropriate for investigation of flower development in Cornus (Cornaceae)

Plant Cell Reports, 32(1), 77–87.

An integrated approach to demonstrating the ANR pathway of proanthocyanidin biosynthesis in plants

PLANTA, 236(3), 901–918.

Comparative Metabolomics of Transgenic Tobacco Plants (Nicotiana tabacum var. Xanthi) Reveals Differential Effects of Engineered Complete and Incomplete Flavonoid Pathways on the Metabolome

In Y. O. Çiftçi (Ed.), Transgenic Plants - Advances and Limitations.

Differentiation of programmed Arabidopsis cells

Bioengineered, 3(1), 54–59.

Evolution of bract development and B‐class MADS box gene expression in petaloid bracts of Cornus s. l. (Cornaceae)

New Phytologist, 196(2), 631–643.

Integration of GC-MS Based Non-Targeted Metabolic Profiling with Headspace Solid Phase Microextraction Enhances the Understanding of Volatile Differentiation in Tobacco Leaves from North Carolina, India and Brazil

American Journal of Plant Sciences, 03(12), 1759–1769.

Programming and reprogramming of gene expression: Mechanisms of cellular specific metabolisms?

Pharmaceutical Biology, 50(11), 1356–1356.

Regulation of anthocyanin biosynthesis by nitrogen in TTG1-GL3/TT8-PAP1-programmed red cells of Arabidopsis thaliana

PLANTA, 236(3), 825–837.

Self-pollinated Artemisia annua plants form a new platform to understand artemisinin biosynthesis

Pharmaceutical Biology, 50(5), 662–662.

Special Issue on Metabolic Plant Biology

Xie, D.-Y., & Melis, A. (2012, September). PLANTA, Vol. 236, pp. 763–764.

A Small-Molecule Screen Identifies l-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis

The Plant Cell, 23(11), 3944–3960.

Characterization of development and artemisinin biosynthesis in self-pollinated Artemisia annua plants

PLANTA, 234(4), 685–697.

Engineering of red cells of Arabidopsis thaliana and comparative genome-wide gene expression analysis of red cells versus wild-type cells

PLANTA, 233(4), 787–805.

Features of anthocyanin biosynthesis in pap1-D and wild-type Arabidopsis thaliana plants grown in different light intensity and culture media conditions

PLANTA, 231(6), 1385–1400.

In vitro direct organogenesis and micropropagation of Artemisia annua

Journal of Biotechnologie Vegetale, 26, 327–337.

Volatile compounds from leaf extracts of Juniperus excelsa growing in Syria via gas chromatography mass spectrometry

ANALYTICAL METHODS, 2(6), 673–677.

Extraction of Essential Oil and Anatomical Characterization of Oil Cell from Leaves of Litsea Euosma

Proceedings of 2009 International Conference of Natural Products and Traditional Medicine, 737–744.

Shoot regeneration of dwarf dogwood (Cornus canadensis L.) and morphological characterization of the regenerated plants

PLANT CELL TISSUE AND ORGAN CULTURE, 97(1), 27–37.

Development of tobacco callus cultures over expressing Arabidopsis PAP1/MYB75 transcription factor and characterization of anthocyanin biosynthesis

Planta, 229(1), 37–51.

In vitro studies of tropical woody species

In Vitro Cellular & Developmental Biology - Animal, 44(Supplement), S54.

TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development

Cell, 133(1), 177–191.

Metabolic engineering of proanthocyanidins through co-expression of anthocyanidin reductase and the PAP1 MYB transcription factor

The Plant Journal, 45(6), 895–907.

Proanthocyanidin biosynthesis – still more questions than answers?

Phytochemistry, 66(18), 2127–2144.

Anthocyanidin reductases from Medicago truncatula and Arabidopsis thaliana

Archives of Biochemistry and Biophysics, 422(1), 91–102.

Molecular and Biochemical Analysis of Two cDNA Clones Encoding Dihydroflavonol-4-Reductase from Medicago truncatula

Plant Physiology, 134(3), 979–994.

Proanthocyanidins - a final frontier in flavonoid research?

New Phytologist, 165(1), 9–28.

Role of Anthocyanidin Reductase, Encoded by BANYULS in Plant Flavonoid Biosynthesis

Science, 299(5605), 396–399.

Agrobacterium-mediated genetic transformation of Acacia mangium

Plant Cell Reports, 20(10), 917–922.

Plant Cell, Tissue and Organ Culture, 66(3), 167–173.

Regeneration of Acacia mangium through somatic embryogenesis

Plant Cell Reports, 20(1), 34–40.

Selection of hairy root clones of Artemisia annua L. for artemisinin production

Israel Journal of Plant Sciences, 49(2), 129–134.

Plant Cell, Tissue and Organ Culture, 63(2), 161–166.

ZYGOTIC EMBRYO CULTURE OF TAXUS CHINESIS VAR. MAIREI AND PLANT REGENERATION THROUGH ORGANOGENESIS

Israel Journal of Plant Sciences, 47(4), 287–289.

Artemisia annua L. Transformation with different Agrobacterium rhizogenesis and large scale culture of hairy roots for Artemisinin (Qinghaosu) production

In P. J. Larkin (Ed.), Agricultural biotechnology : laboratory, field and market : proceedings of the 4th Asia-Pacific Conference on Agricultural Biotechnology, 13-16 July 1998, Darwin, Australia (pp. 134–136). Fyshwick, Canberra: Under the Counter Publishing.

Studies on the karyotype of Artemisia annua

Chinese Bulletin of Botany, 12(Supplement), 71–72.

The Progress of Artemisia annua research--the application of biotechnology and prospects

Chinese Bulletin of Botany, 12(4), 28–31.

Studies on the relation between the changes of endogenous IPA and the growth of cell of Arnebia euchroma during the culture

Journal of Jishou University (Natural Science), 14(6), 29–31.

Tissue culture and chromosome analysis of Arnebia euchroma

Chinese Bulletin of Botany, 9(1), 37–41.

Biochemical and molecular genetic approaches to proanthocyanidin biosynthesis

Dixon, R. A., Xie, D. Y., Sharma, S. B., Chen, F., & Ferreira, D. Abstracts of papers : 228th ACS National Meeting, American Chemical Society, Philadelphia, PA, August 22-26, 2004, 228, U247. Washington, DC: American Chemical Society.