Works (173)

Updated: March 5th, 2024 05:02

2024 journal article

Reverse metabolomics for the discovery of chemical structures from humans

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: March 4, 2024

2023 article

Aggregated Molecular Phenotype Scores: Enhancing Assessment and Visualization of Mass Spectrometry Imaging Data for Tissue-Based Diagnostics

Chappel, J. R., King, M. E., Fleming, J., Eberlin, L. S., Reif, D. M., & Baker, E. S. (2023, August 14). ANALYTICAL CHEMISTRY, Vol. 8.

By: J. Chappel n, M. King*, J. Fleming n, L. Eberlin*, D. Reif* & E. Baker*

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: August 28, 2023

2023 article

Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut

Foley, M. H., Walker, M. E., Stewart, A. K., O'Flaherty, S., Gentry, E. C., Patel, S., … Theriot, C. M. (2023, March 13). NATURE MICROBIOLOGY, Vol. 3.

By: M. Foley n, M. Walker*, A. Stewart n, S. O'Flaherty n, E. Gentry*, S. Patel*, V. Beaty*, G. Allen n ...

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Mice; Humans; Clostridioides difficile; Clostridioides; Bile Acids and Salts; Amidohydrolases; Clostridium Infections
Sources: Web Of Science, ORCID
Added: April 4, 2023

2023 journal article

Characterizing Adeno-Associated Virus Capsids with Both Denaturing and Intact Analysis Methods

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 34(12), 2811–2821.

By: J. Ryan*, M. Kostelic*, C. Hsieh*, J. Powers n, C. Aspinwall*, J. Dodds*, J. Schiel, M. Marty*, E. Baker*

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: December 18, 2023

2023 journal article

Integrative Chemical-Biological Grouping of Complex High Production Volume Substances from Lower Olefin Manufacturing Streams

TOXICS, 11(7).

By: A. Cordova*, W. Klaren*, L. Ford*, F. Grimm*, E. Baker*, Y. Zhou n, F. Wright n, I. Rusyn*

co-author countries: United States of America 🇺🇸
author keywords: UVCB; petroleum; regulatory risk assessment; read-across; ion mobility spectrometry
Sources: ORCID, Web Of Science
Added: July 6, 2023

2023 journal article

Using Multidimensional Separations to Distinguish Isomeric Amino Acid-Bile Acid Conjugates and Assess Their Presence and Perturbations in Model Systems

ANALYTICAL CHEMISTRY, 95(41), 15357–15366.

By: A. Stewart n, M. Foley n, M. Dougherty*, S. Mcgill*, A. Gulati*, E. Gentry*, L. Hagey*, P. Dorrestein* ...

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: October 30, 2023

2022 article

A High-Throughput Ion Mobility Spectrometry-Mass Spectrometry Screening Method for Opioid Profiling

Butler, K. E., & Baker, E. S. (2022, September 22). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 9.

By: K. Butler n & E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Analgesics, Opioid; High-Throughput Screening Assays; Humans; Ion Mobility Spectrometry / methods; Mass Spectrometry / methods; Solid Phase Extraction
Sources: Web Of Science, ORCID
Added: October 3, 2022

2022 journal article

A Preprocessing Tool for Enhanced Ion Mobility-Mass Spectrometry-Based Omics Workflows

JOURNAL OF PROTEOME RESEARCH, 21(3), 798–807.

By: A. Bilbao*, B. Gibbons*, S. Stow*, J. Kyle*, K. Bloodsworth*, S. Payne*, R. Smith*, Y. Ibrahim*, E. Baker n, J. Fjeldsted*

co-author countries: United States of America 🇺🇸
author keywords: mass spectrometry; ion mobility spectrometry; preprocessing software; time-of-flight detector saturation; data-independent acquisition; lipid annotation
MeSH headings : Chromatography, Liquid / methods; Humans; Ion Mobility Spectrometry / methods; Ions; Lipids; Mass Spectrometry / methods; Workflow
Sources: Web Of Science, ORCID
Added: May 2, 2022

2022 journal article

Analysis of per- and polyfluoroalkyl substances in Houston Ship Channel and Galveston Bay following a large-scale industrial fire using ion-mobility-spectrometry-mass spectrometry

JOURNAL OF ENVIRONMENTAL SCIENCES, 115, 350–362.

By: A. Valdiviezo*, N. Aly*, Y. Luo*, A. Cordova*, G. Casillas*, M. Foster n, E. Baker n, I. Rusyn*

co-author countries: United States of America 🇺🇸
author keywords: Emergency; Environmental disaster; PFAS
MeSH headings : Animals; Bays; Chromatography, Liquid; Deer; Fluorocarbons / analysis; Ion Mobility Spectrometry; Tandem Mass Spectrometry; Water Pollutants, Chemical / analysis
Sources: Web Of Science, ORCID
Added: January 18, 2022

2022 article

Assessing the Fate of Dissolved Organic Compounds in Landfill Leachate and Wastewater Treatment Systems

Doyle, M. G., Odenkirk, M. T., Stewart, A. K., Nelson, J. P., Baker, E. S., & Cruz, F. (2022, November 1). ACS ES&T WATER, Vol. 11.

co-author countries: United States of America 🇺🇸
author keywords: nontargeted analysis; anthropogenic chemicals; wastewater; landfill leachate; reverse osmosis
Sources: Web Of Science, ORCID
Added: November 2, 2022

2022 article

CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics

Rainey, M. A., Watson, C. A., Asef, C. K., Foster, M. R., Baker, E. S., & Fernandez, F. M. (2022, December 6). ANALYTICAL CHEMISTRY, Vol. 12.

By: M. Rainey*, C. Watson*, C. Asef*, M. Foster n, E. Baker n & F. Fernandez*

co-author countries: United States of America 🇺🇸
MeSH headings : Metabolomics / methods; Mass Spectrometry / methods; Algorithms; Chromatography, High Pressure Liquid; Machine Learning
Sources: Web Of Science, ORCID
Added: January 3, 2023

2022 journal article

Characterization of compositional variability in petroleum substances

FUEL, 317.

By: A. Roman-Hubers*, A. Cordova*, A. Rohde*, W. Chiu*, T. McDonald*, F. Wright*, J. Dodds n, E. Baker n, I. Rusyn*

co-author countries: United States of America 🇺🇸
author keywords: UVCB; Registration; Variability; IMS-MS
Sources: Web Of Science, ORCID
Added: May 10, 2022

2022 article

Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, and Validate Metabolites in Untargeted Analyses

Dodds, J. N., Wang, L., Patti, G. J., & Baker, E. S. (2022, January 28). ANALYTICAL CHEMISTRY, Vol. 1.

By: J. Dodds n, L. Wang*, G. Patti* & E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Chromatography, Liquid; Ion Mobility Spectrometry; Metabolomics / methods; Tandem Mass Spectrometry; Workflow
Sources: Web Of Science, ORCID
Added: March 14, 2022

2022 journal article

Cupric Ions Selectively Modulate TRAAK-Phosphatidylserine Interactions

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 144(16), 7048–7053.

By: Y. Zhu*, S. Schrecke*, S. Tang*, M. Odenkirk n, T. Walker*, L. Stover*, J. Lyu*, T. Zhang* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Cations, Divalent / metabolism; Phosphatidylserines; Potassium Channels, Tandem Pore Domain / chemistry; Potassium Channels, Tandem Pore Domain / metabolism
Sources: Web Of Science, ORCID
Added: June 6, 2022

2022 article

Empowering women and addressing underrepresentation in the field of mass spectrometry

Rampler, E., Baker, E. S., Kirkwood, K. I., Schwaiger-Haber, M., Tam, M., Jones, M. A., & Sherman, M. (2022, February 16). EXPERT REVIEW OF PROTEOMICS, Vol. 2.

By: E. Rampler*, E. Baker n, K. Kirkwood n, M. Schwaiger-Haber*, M. Tam, M. Jones*, M. Sherman

co-author countries: Austria 🇦🇹 United States of America 🇺🇸
author keywords: FeMS; ASMS; mass spectrometry; women; diversity
MeSH headings : Female; Humans; Mass Spectrometry; Power, Psychological
Sources: Web Of Science, ORCID
Added: March 7, 2022

2022 journal article

Evaluation of Metabolism of a Defined Pesticide Mixture through Multiple In Vitro Liver Models

TOXICS, 10(10).

co-author countries: Japan 🇯🇵 United States of America 🇺🇸
author keywords: toxicokinetics; chemical mixtures; defined mixtures; human health risk assessment; nontargeted analyses; microphysiological systems
Sources: ORCID, Web Of Science
Added: October 2, 2022

2022 journal article

High-Resolution Demultiplexing (HRdm) Ion Mobility Spectrometry-Mass Spectrometry for Aspartic and Isoaspartic Acid Determination and Screening

ANALYTICAL CHEMISTRY, 94(16), 6191–6199.

By: K. Butler n, J. Dodds n, T. Flick*, I. Campuzano* & E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Chromatography, Liquid; Ion Mobility Spectrometry / methods; Isoaspartic Acid / analysis; Mass Spectrometry / methods; Peptides
Sources: Web Of Science, ORCID
Added: May 23, 2022

2022 article

Impacts of Gestational FireMaster 550 (FM 550) Exposure on the Neonatal Cortex are Sex Specific and Largely Attributable to the Organophosphate Esters

Witchey, S. K., Doyle, M. G., Fredenburg, J. D., St Armour, G., Horman, B., Odenkirk, M. T., … Patisaul, H. B. (2022, September 8). NEUROENDOCRINOLOGY, Vol. 9.

By: S. Witchey n, M. Doyle n, J. Fredenburg n, G. St Armour n, B. Horman n, M. Odenkirk n, D. Aylor n, E. Baker n, H. Patisaul n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: September 26, 2022

2022 article

Introducing the Lipidomics Minimal Reporting Checklist

McDonald, J. G., Ejsing, C. S., Kopczynski, D., Holcapek, M., Aoki, J., Arita, M., … Ekroos, K. (2022, August 8). NATURE METABOLISM, Vol. 8.

co-author countries: Austria 🇦🇹 Australia 🇦🇺 China 🇨🇳 Czechia 🇨🇿 Germany 🇩🇪 Denmark 🇩🇰 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Japan 🇯🇵 Singapore 🇸🇬 United States of America 🇺🇸
MeSH headings : Checklist; Lipid Metabolism; Lipidomics; Mass Spectrometry
Sources: Web Of Science, ORCID
Added: August 22, 2022

2022 article

Stability and Dissociation of Adeno-Associated Viral Capsids by Variable Temperature-Charge Detection-Mass Spectrometry

Kostelic, M. M., Ryan, J. P., Brown, L. S., Jackson, T. W., Hsieh, C.-C., Zak, C. K., … Marty, M. T. (2022, August 18). ANALYTICAL CHEMISTRY, Vol. 8.

By: M. Kostelic*, J. Ryan n, L. Brown*, T. Jackson*, C. Hsieh*, C. Zak*, H. Sanders*, Y. Liu* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Capsid / chemistry; Capsid Proteins / chemistry; Dependovirus / chemistry; Mass Spectrometry; Temperature
Sources: Web Of Science, ORCID
Added: September 12, 2022

2022 journal article

Surface Modified Nano-Electrospray Needles Improve Sensitivity for Native Mass Spectrometry

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 33(6), 1031–1037.

By: M. Kostelic*, C. Hsieh*, H. Sanders*, C. Zak*, J. Ryan n, E. Baker n, C. Aspinwall*, M. Marty*

co-author countries: United States of America 🇺🇸
author keywords: native mass spectrometry; charge detection mass spectrometry; electrospray ionization; silane chemistry
MeSH headings : Needles; Proteins / analysis; Spectrometry, Mass, Electrospray Ionization / methods
Sources: Web Of Science, ORCID
Added: June 20, 2022

2022 journal article

Temporal chemical composition changes in water below a crude oil slick irradiated with natural sunlight

MARINE POLLUTION BULLETIN, 185.

By: A. Roman-Hubers*, C. Aeppli*, J. Dodds n, E. Baker n, K. McFarlin*, D. Letinski*, L. Zhao*, D. Mitchell* ...

co-author countries: United States of America 🇺🇸
author keywords: Oil; Photodegradation; Photooxidation; Petroleomics; Toxicity; Spill
MeSH headings : Petroleum; Sunlight; Water; Petroleum Pollution; Seawater
Sources: Web Of Science, ORCID
Added: February 20, 2023

2022 journal article

Uncovering PFAS and Other Xenobiotics in the Dark Metabolome Using Ion Mobility Spectrometry, Mass Defect Analysis, and Machine Learning

ENVIRONMENTAL SCIENCE & TECHNOLOGY, 56(12), 9133–9143.

By: M. Foster n, M. Rainey*, C. Watson*, J. Dodds n, K. Kirkwood n, F. Fernandez*, E. Baker n

co-author countries: United States of America 🇺🇸
author keywords: xenobiotics; per- and polyfluoroalkyl substances; ion mobility spectrometry; mass spectrometry; mass defect; machine learning; PFAS
MeSH headings : Fluorocarbons; Humans; Ion Mobility Spectrometry / methods; Machine Learning; Metabolome; Xenobiotics
Sources: Web Of Science, ORCID
Added: July 5, 2022

2022 journal article

Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS)

ENVIRONMENTAL SCIENCE & TECHNOLOGY, 56(6), 3441–3451.

By: K. Kirkwood n, J. Fleming n, H. Nguyen n, D. Reif n, E. Baker n & S. Belcher n

co-author countries: United States of America 🇺🇸
author keywords: Biomonitoring; contamination; per- and polyfluoroalkyl substances; fluoroethers; ion mobility; mass spectrometry; PFAS
MeSH headings : Alkanesulfonic Acids / analysis; Chromatography, Liquid; Fluorocarbons / analysis; United States; United States Environmental Protection Agency
Sources: Web Of Science, ORCID
Added: February 18, 2022

2022 article

Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions

Kirkwood, K. I., Pratt, B. S., Shulman, N., Tamura, K., MacCoss, M. J., MacLean, B. X., & Baker, E. S. (2022, July 13). NATURE PROTOCOLS, Vol. 7.

By: K. Kirkwood n, B. Pratt*, N. Shulman*, K. Tamura*, M. MacCoss*, B. MacLean*, E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Ion Mobility Spectrometry; Lipidomics; Chromatography, Liquid / methods; Mass Spectrometry / methods; Lipids
Sources: Web Of Science, ORCID
Added: July 26, 2022

2021 journal article

A Comparative Analysis of Analytical Techniques for Rapid Oil Spill Identification

ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY, 40(4), 1034–1049.

By: A. Roman-Hubers*, T. McDonald*, E. Baker n, W. Chiu* & I. Rusyn*

co-author countries: United States of America 🇺🇸
author keywords: Ion mobility spectrometry– mass spectrometry; Fingerprinting; Petroleum
MeSH headings : Gas Chromatography-Mass Spectrometry; Gasoline; Hydrocarbons; Petroleum / analysis; Petroleum Pollution / analysis
Sources: Web Of Science, ORCID
Added: April 5, 2021

2021 journal article

Data Processing Workflow to Identify Structurally Related Compounds in Petroleum Substances Using Ion Mobility Spectrometry-Mass Spectrometry

ENERGY & FUELS, 35(13), 10529–10539.

By: A. Roman-Hubers*, A. Cordova*, N. Aly*, T. McDonald*, D. Lloyd n, F. Wright n, E. Baker n, W. Chiu*, I. Rusyn*

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: July 26, 2021

2021 article

Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity

Kirkwood, K. I., Christopher, M. W., Burgess, J. L., Littau, S. R., Foster, K., Richey, K., … Baker, E. S. (2021, December 7). JOURNAL OF PROTEOME RESEARCH, Vol. 12.

By: K. Kirkwood n, M. Christopher n, J. Burgess*, S. Littau*, K. Foster*, K. Richey*, B. Pratt*, N. Shulman* ...

co-author countries: United States of America 🇺🇸
author keywords: lipidomics; ion mobility spectrometry; spectral libraries; data annotation; smoke inhalation
MeSH headings : Chromatography, Liquid; Humans; Ion Mobility Spectrometry; Lipidomics; Lipids; Smoke Inhalation Injury
Sources: Web Of Science, ORCID
Added: December 20, 2021

2021 review

From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics

[Review of ]. ANALYTICAL CHEMISTRY, 93(1), 641–656.

By: J. Dodds n, N. Alexander n, K. Kirkwood n, M. Foster n, Z. Hopkins n, D. Knappe n, E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Fluorocarbons / analysis; Mass Spectrometry; Xenobiotics / analysis
Sources: Web Of Science, ORCID
Added: February 4, 2021

2021 journal article

From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem

MSYSTEMS, 6(2).

co-author countries: United States of America 🇺🇸
author keywords: 18:2; 18:3; alpha-linolenic acid; fungal garden ecosystem; interkingdom communication; leaf-cutter ants; lignocellulose degradation; linoleic acid; lipidomics; mass spectrometry
Sources: ORCID, Web Of Science
Added: April 28, 2021

2021 journal article

From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions

BIOMOLECULES, 11(1).

co-author countries: United States of America 🇺🇸
author keywords: lipidomics; metabolomics; multi-omics; planned myocardial infarction (PMI); myocardial infarction (MI); exercise; heart; cheminformatics
MeSH headings : Exercise; Exercise Test; Female; Humans; Lipidomics; Lipids / blood; Lipids / genetics; Male; Metabolomics; Middle Aged; Myocardial Infarction / blood; Myocardial Infarction / genetics; Myocardial Infarction / physiopathology; Myocardial Infarction / prevention & control; Risk Factors
Sources: Web Of Science, ORCID
Added: January 4, 2021

2021 journal article

Improving the Speed and Selectivity of Newborn Screening Using Ion Mobility Spectrometry-Mass Spectrometry

ANALYTICAL CHEMISTRY, 93(51), 17094–17102.

By: J. Dodds n & E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Biomarkers; High-Throughput Screening Assays; Humans; Infant, Newborn; Ion Mobility Spectrometry; Mass Spectrometry; Neonatal Screening
Sources: Web Of Science, ORCID
Added: February 7, 2022

2021 journal article

In situ imaging reveals disparity between prostaglandin localization and abundance of prostaglandin synthases

COMMUNICATIONS BIOLOGY, 4(1).

co-author countries: Sweden 🇸🇪 United States of America 🇺🇸
MeSH headings : Animals; Cyclooxygenase 1 / genetics; Cyclooxygenase 1 / metabolism; Cyclooxygenase 2 / genetics; Cyclooxygenase 2 / metabolism; Embryo, Mammalian; Mass Spectrometry; Mice; Prostaglandin-Endoperoxide Synthases / metabolism; Prostaglandins / metabolism
Sources: Web Of Science, ORCID
Added: August 30, 2021

2021 journal article

Ion Mobility Spectrometry Characterization of the Intermediate Hydrogen-Containing Gold Cluster Au-7(PPh3)(7)H-5(2+)

JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 12(10), 2502–2508.

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: April 5, 2021

2021 journal article

Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments

ANALYTICAL CHEMISTRY, 93(22), 7763–7773.

By: M. Odenkirk n, D. Reif n & E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Artificial Intelligence; Big Data; Data Analysis
Sources: Web Of Science, ORCID
Added: July 19, 2021

2021 article

Per- and polyfluoroalkyl substances (PFAS)-contaminants of emerging concern

Baker, E. S., & Knappe, D. R. U. (2021, December 2). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 12.

By: E. Baker n & D. Knappe*

co-author countries: United States of America 🇺🇸
MeSH headings : Anthropogenic Effects; Environmental Pollutants / analysis; Environmental Pollutants / pharmacokinetics; Fluorocarbons / analysis; Fluorocarbons / pharmacokinetics; Humans; Tissue Distribution; United States; United States Environmental Protection Agency
Sources: Web Of Science, ORCID
Added: December 13, 2021

2021 review

Recommendations for good practice in MS-based lipidomics

[Review of ]. JOURNAL OF LIPID RESEARCH, 62.

By: H. Koefeler, R. Ahrends*, E. Baker n, K. Ekroos, X. Han*, N. Hoffmann*, M. Holcapek*, M. Wenk*, G. Liebisch*

co-author countries: Austria 🇦🇹 Czechia 🇨🇿 Germany 🇩🇪 Singapore 🇸🇬 United States of America 🇺🇸
author keywords:   lipidomics; metabolomics; MS; chromatography; ion mobility spectrometry; phospholipids; sphingolipids; LC-MS; lipid identification
MeSH headings : Humans; Lipidomics / standards; Lipids / analysis; Mass Spectrometry
Sources: Web Of Science, ORCID
Added: February 7, 2022

2021 journal article

Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes

FOOD AND CHEMICAL TOXICOLOGY, 149.

By: Y. Luo*, Z. Chen*, A. Blanchette*, Y. Zhou n, F. Wright n, E. Baker n, W. Chiu*, I. Rusyn*

co-author countries: United States of America 🇺🇸
author keywords: Cardiovascular; Heart rate; QT interval; Theophylline; Adenine; Azelate
MeSH headings : Calcium / metabolism; Cell Differentiation; Cell Survival / drug effects; Drug-Related Side Effects and Adverse Reactions; Energy Drinks / analysis; Heart Diseases / chemically induced; Humans; Induced Pluripotent Stem Cells / drug effects; Myocytes, Cardiac / drug effects; Risk Assessment
Sources: ORCID, Web Of Science
Added: February 4, 2021

2021 journal article

Spatial Distribution of Polycyclic Aromatic Hydrocarbon Contaminants after Hurricane Harvey in a Houston Neighborhood.

Journal of Health & Pollution.

Erin Baker

Source: ORCID
Added: April 28, 2021

2021 journal article

Utilizing Ion Mobility-Mass Spectrometry to Investigate the Unfolding Pathway of Cu/Zn Superoxide Dismutase

FRONTIERS IN CHEMISTRY, 9.

By: K. Butler n, Y. Takinami, A. Rainczuk, E. Baker n & B. Roberts*

co-author countries: United States of America 🇺🇸
author keywords: ion mobility spectrometry; native mass spectrometry; superoxide dismutase; SOD1; drift tube ion mobility spectrometry; trapped ion mobility spectrometry
Sources: Web Of Science, ORCID
Added: March 15, 2021

2021 article

Utilizing ion mobility spectrometry-mass spectrometry for the characterization and detection of persistent organic pollutants and their metabolites

Aly, N. A., Dodds, J. N., Luo, Y.-S., Grimm, F. A., Foster, M. K., Rusyn, I., & Baker, E. S. (2021, October 20). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 10.

By: N. Aly*, J. Dodds n, Y. Luo*, F. Grimm*, M. Foster n, I. Rusyn*, E. Baker n

co-author countries: United States of America 🇺🇸
author keywords: Ion Mobility Spectrometry; Pesticides; Pharmaceuticals; PFAS
MeSH headings : Environmental Monitoring / methods; Humans; Ion Mobility Spectrometry / methods; Mass Spectrometry / methods; Persistent Organic Pollutants / chemistry; Persistent Organic Pollutants / metabolism; Pesticides / analysis; Pesticides / metabolism; Pharmaceutical Preparations / analysis; Pharmaceutical Preparations / metabolism; Polychlorinated Biphenyls / analysis; Polychlorinated Biphenyls / metabolism
Sources: Web Of Science, ORCID
Added: November 1, 2021

2021 article

Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT (TM) derivatized N-linked glycans in biological samples

Butler, K. E., Kalmar, J. G., Muddiman, D. C., & Baker, E. S. (2021, August 4). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 8.

By: K. Butler n, J. Kalmar n, D. Muddiman n & E. Baker n

co-author countries: United States of America 🇺🇸
author keywords: Glycomics; Ion mobility spectrometry; INLIGHT (TM); N-Linked glycans; LC-IMS-MS
Sources: Web Of Science, ORCID
Added: August 16, 2021

2020 journal article

Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications

Journal of the American Society for Mass Spectrometry, 31(3), 642–650.

By: M. Ekelof n, J. Dodds n, S. Khodjaniyazova n, K. Garrard n, E. Baker n & D. Muddiman n

co-author countries: United States of America 🇺🇸
author keywords: mass spectrometry imaging; ion mobility spectrometry; IR-MALDESI; high-throughput; isomer resolution
Sources: ORCID, Web Of Science, Crossref
Added: March 23, 2020

2020 journal article

Enhanced protocol for quantitativeN-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)(TM)

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(27), 7569–7579.

By: J. Kalmar n, K. Butler n, E. Baker n & D. Muddiman n

co-author countries: United States of America 🇺🇸
author keywords: Glycomics; Orbitrap; Sample preparation; INLIGHT (TM); N-linked glycans; HILIC; PGC; Reversed-phase; Chromatography
MeSH headings : Chromatography, Reverse-Phase / methods; Female; Fetuins / chemistry; Glycomics / methods; Glycosylation; Humans; Male; Peptide-N4-(N-acetyl-beta-glucosaminyl) Asparagine Amidase / chemistry; Polysaccharides / analysis; Tandem Mass Spectrometry / methods
Sources: Web Of Science, ORCID
Added: September 14, 2020

2020 journal article

Metabolite collision cross section prediction without energy-minimized structures

The Analyst, 145(16), 5414–5418.

By: M. Soper-Hopper*, J. Vandegrift*, E. Baker n & F. Fernandez*

co-author countries: United States of America 🇺🇸
MeSH headings : Ion Mobility Spectrometry; Mass Spectrometry
Sources: Web Of Science, ORCID
Added: August 31, 2020

2020 journal article

Proteomic assessment of serum biomarkers of longevity in older men

AGING CELL, 19(11).

By: E. Orwoll*, J. Wiedrick*, C. Nielson*, J. Jacobs*, E. Baker n, P. Piehowski*, V. Petyuk*, Y. Gao* ...

co-author countries: United States of America 🇺🇸
author keywords: aging; biomarker; inflammation; longevity; men; proteomics
MeSH headings : Aged; Biomarkers / blood; Humans; Longevity; Male; Proteomics / methods
Sources: Web Of Science, ORCID
Added: November 2, 2020

2020 journal article

Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances in Aqueous Film-Forming Foams Using Ion Mobility Spectrometry-Mass Spectrometry

ENVIRONMENTAL SCIENCE & TECHNOLOGY, 54(23), 15024–15034.

co-author countries: United States of America 🇺🇸
MeSH headings : Fluorocarbons / analysis; Ion Mobility Spectrometry; Tandem Mass Spectrometry; Water; Water Pollutants, Chemical / analysis
Sources: Web Of Science, ORCID
Added: January 19, 2021

2020 journal article

Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)

Analytical Chemistry, 92(6), 4427–4435.

By: J. Dodds n, Z. Hopkins n, D. Knappe n & E. Baker n

co-author countries: United States of America 🇺🇸
MeSH headings : Hydrocarbons, Fluorinated / analysis; Ion Mobility Spectrometry; Mass Spectrometry; Molecular Structure; Polymers / analysis
Sources: ORCID, Web Of Science
Added: March 23, 2020

2020 journal article

Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems

ANALYST, 145(22), 7197–7209.

By: M. Odenkirk n, P. Zin n, J. Ash n, D. Reif n, D. Fourches n & E. Baker n

co-author countries: Japan 🇯🇵 United States of America 🇺🇸
MeSH headings : Cheminformatics; Lipidomics; Lipids; Mass Spectrometry; Phenotype
Sources: Web Of Science, ORCID
Added: November 24, 2020

2020 journal article

Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident

Environmental Pollution, 265(B), 115009.

By: N. Aly*, Y. Luo*, Y. Liu*, G. Casillas*, T. McDonald*, J. Kaihatu*, M. Jun*, N. Ellis ...

co-author countries: United States of America 🇺🇸
MeSH headings : Drinking Water / analysis; Fires; Fluorocarbons / analysis; Texas; Water Pollutants, Chemical / analysis
Sources: Web Of Science, ORCID
Added: August 31, 2020

2020 journal article

Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools

MOLECULAR OMICS, 16(6).

By: M. Odenkirk n, K. Stratton*, M. Gritsenko*, L. Bramer*, B. Webb-Robertson*, K. Bloodsworth*, K. Weitz*, A. Lipton* ...

co-author countries: Japan 🇯🇵 United States of America 🇺🇸
MeSH headings : Case-Control Studies; Diabetes, Gestational / genetics; Female; Genomics; Humans; Lipidomics; Metabolic Networks and Pathways; Pre-Eclampsia / genetics; Pregnancy
Sources: Web Of Science, ORCID
Added: January 4, 2021

2020 article

Utilizing Drift Tube Ion Mobility Spectrometry for the Evaluation of Metabolites and Xenobiotics

ION MOBILITY-MASS SPECTROMETRY: METHODS AND PROTOCOLS, Vol. 2084, pp. 35–54.

By: M. Odenkirk n & E. Baker n

co-author countries: United States of America 🇺🇸

Contributors: M. Odenkirk n & E. Baker n

author keywords: Ion mobility spectrometry (IMS); Drift tube ion mobility spectrometry (DTIMS); Metabolomics; Exposomics; Collision cross section (CCS)
MeSH headings : Ion Mobility Spectrometry / methods; Metabolome; Metabolomics / methods; Xenobiotics / analysis
Sources: ORCID, Web Of Science
Added: December 5, 2019

2019 article

Challenges in Identifying the Dark Molecules of Life

ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, VOL 12, Vol. 12, pp. 177–199.

By: M. Eugenia Monge*, J. Dodds n, E. Baker n, A. Edison* & F. Fernandez*

co-author countries: Argentina 🇦🇷 United States of America 🇺🇸

Contributors: M. Monge*, J. Dodds n, E. Baker n, A. Edison* & F. Fernaacutendez

author keywords: metabolomics; metabolite identification; chromatography; ion mobility; tandem mass spectrometry; nuclear magnetic resonance spectroscopy
MeSH headings : Animals; Chromatography, Liquid / methods; Humans; Ion Mobility Spectrometry / methods; Magnetic Resonance Spectroscopy / methods; Mass Spectrometry / methods; Metabolome; Metabolomics / methods
Sources: Web Of Science, ORCID
Added: July 1, 2019

2019 journal article

Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 411(19), 4673–4682.

By: X. Zheng*, F. Smith*, N. Aly*, J. Cai*, R. Smith*, A. Patterson*, E. Baker n

co-author countries: United States of America 🇺🇸

Contributors: X. Zheng*, F. Smith*, N. Aly*, J. Cai*, R. Smith*, A. Patterson*, E. Baker n

author keywords: Ion mobility spectrometry; Bile acids; Collisional cross sections
MeSH headings : Bile Acids and Salts / chemistry; Bile Acids and Salts / standards; Copper / chemistry; Humans; Ion Mobility Spectrometry / methods; Isomerism; Molecular Structure; Reference Standards; Zinc / chemistry
Sources: Web Of Science, ORCID
Added: July 29, 2019

2019 journal article

Folding and Assembly of Short α, β, Î-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures

Journal of the American Chemical Society, 141(36), 14239–14248.

By: Y. Zhang*, Y. Zhong*, A. Connor*, D. Miller*, R. Cao*, J. Shen*, B. Song*, E. Baker* ...

co-author countries: China 🇨🇳 Singapore 🇸🇬 United States of America 🇺🇸

Contributors: Y. Zhang*, Y. Zhong*, A. Connor*, D. Miller*, R. Cao*, J. Shen*, B. Song*, E. Baker* ...

MeSH headings : Crystallography, X-Ray; Hydrogen Bonding; Models, Molecular; Peptides / chemistry; Protein Folding; Protein Structure, Secondary
Source: ORCID
Added: December 5, 2019

2019 journal article

Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 30(11), 2185–2195.

By: J. Dodds n & E. Baker n

co-author countries: United States of America 🇺🇸

Contributors: J. Dodds n & E. Baker n

author keywords: Ion mobility spectrometry; IMS; Untargeted metabolomics; Mass spectrometry
Sources: Web Of Science, ORCID
Added: November 25, 2019

2019 book

Ion Mobility-Mass Spectrometry in Metabolomic, Lipidomic, and Proteomic Analyses

In Comprehensive Analytical Chemistry (Vol. 83, pp. 123–159).

co-author countries: United States of America 🇺🇸

Contributors: C. Chouinard*, G. Nagy*, R. Smith* & E. Baker*

Source: ORCID
Added: December 5, 2019

2019 review

Ion mobility spectrometry and the omics: Distinguishing isomers, molecular classes and contaminant ions in complex samples

[Review of ]. TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 116, 292–299.

By: K. Burnum-Johnson*, X. Zheng*, J. Dodds n, J. Ash n, D. Fourches n, C. Nicora*, J. Wendler*, T. Metz* ...

co-author countries: United States of America 🇺🇸

Contributors: K. Burnum-Johnson*, X. Zheng*, J. Dodds n, J. Ash n, D. Fourches n, C. Nicora*, J. Wendler*, T. Metz* ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Omics; Proteomics; Lipidomics; Metabolomics; Glycomics; Exposomics
Sources: Web Of Science, ORCID
Added: July 1, 2019

2019 journal article

Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 30(10), 2031–2036.

By: E. Baker n & G. Patti*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker n & G. Patti*

author keywords: Metabolomics; Informatics; ASMS Fall Workshop; Metabolism
MeSH headings : Chromatography, Liquid; Computational Biology / organization & administration; Computational Biology / standards; Humans; Mass Spectrometry; Metabolomics / organization & administration; Metabolomics / standards
Sources: Web Of Science, ORCID
Added: November 11, 2019

2019 journal article

Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS

ANALYTICAL CHEMISTRY, 91(8), 5191–5199.

By: P. Plante*, E. Francovic-Fontaine*, J. May*, J. McLean*, E. Baker n, F. Laviolette*, M. Marchand*, J. Corbeil*

co-author countries: Canada 🇨🇦 United States of America 🇺🇸

Contributors: P. Plante*, É. Francovic-Fontaine*, J. May*, J. McLean*, E. Baker n, F. Laviolette*, M. Marchand*, J. Corbeil*

MeSH headings : Algorithms; Deep Learning; Ion Mobility Spectrometry; Magnetic Resonance Spectroscopy; Mass Spectrometry; Metabolomics; Neural Networks, Computer
Sources: Web Of Science, ORCID
Added: May 13, 2019

2018 journal article

A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements

Analytical Chemistry, 90(1), 737–744.

By: D. Orton*, M. Tfaily*, R. Moore*, B. Lamarche*, X. Zheng*, T. Fillmore*, R. Chu*, K. Weitz* ...

co-author countries: United States of America 🇺🇸

Contributors: D. Orton*, M. Tfaily*, R. Moore*, B. Lamarche*, X. Zheng*, T. Fillmore*, R. Chu*, K. Weitz* ...

MeSH headings : Escherichia coli / chemistry; Escherichia coli Proteins / chemistry; Flow Injection Analysis / instrumentation; Flow Injection Analysis / methods; Hydrogen-Ion Concentration; Ion Mobility Spectrometry / instrumentation; Ion Mobility Spectrometry / methods; Mass Spectrometry / instrumentation; Mass Spectrometry / methods; Soil / chemistry
Source: ORCID
Added: December 5, 2019

2018 journal article

An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies

International Journal of Mass Spectrometry, 427, 91–99.

By: A. Bilbao*, B. Gibbons*, G. Slysz*, K. Crowell*, M. Monroe*, Y. Ibrahim*, R. Smith*, S. Payne*, E. Baker*

co-author countries: United States of America 🇺🇸

Contributors: A. Bilbao*, B. Gibbons*, G. Slysz*, K. Crowell*, M. Monroe*, Y. Ibrahim*, R. Smith*, S. Payne*, E. Baker*

author keywords: Mass spectrometry; Detector saturation; Analog-to-digital converter saturation; Saturation correction; Isotopic envelope; Isotopic ratios; Quantitation
Source: ORCID
Added: December 5, 2019

2018 journal article

Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis

Tuberculosis, 112, 52–61.

co-author countries: United States of America 🇺🇸

Contributors: K. Kedia*, J. Wendler*, E. Baker*, K. Burnum-Johnson*, L. Jarsberg*, K. Stratton*, A. Wright*, P. Piehowski* ...

author keywords: Ion mobility spectrometry; Proteomics; Tuberculosis; Antibiotic treatment
MeSH headings : Adolescent; Adult; Antitubercular Agents / therapeutic use; Biomarkers / blood; Blood Proteins / metabolism; Child; Child, Preschool; Chromatography, Liquid; Drug Therapy, Combination; Female; High-Throughput Screening Assays; Host-Pathogen Interactions; Humans; Infant; Infant, Newborn; Ion Mobility Spectrometry; Male; Mass Spectrometry; Middle Aged; North America; Predictive Value of Tests; Prospective Studies; Protein Interaction Maps; Proteomics / methods; South Africa; Spain; Time Factors; Treatment Outcome; Tuberculosis, Pulmonary / blood; Tuberculosis, Pulmonary / diagnosis; Tuberculosis, Pulmonary / drug therapy; Tuberculosis, Pulmonary / microbiology; Uganda; Young Adult
Source: ORCID
Added: December 5, 2019

2018 journal article

Cell type-resolved human lung lipidome reveals cellular cooperation in lung function

Scientific Reports, 8(1).

By: J. Kyle*, G. Clair*, G. Bandyopadhyay*, R. Misra*, E. Zink*, K. Bloodsworth*, A. Shukla*, Y. Du* ...

co-author countries: United States of America 🇺🇸

Contributors: J. Kyle*, G. Clair*, G. Bandyopadhyay*, R. Misra*, E. Zink*, K. Bloodsworth*, A. Shukla*, Y. Du* ...

MeSH headings : Databases, Protein; Female; Humans; Lipid Metabolism / physiology; Lung / cytology; Lung / physiology; Male
Source: ORCID
Added: December 5, 2019

2018 journal article

Comparing residential contamination in a Houston environmental justice neighborhood before and after Hurricane Harvey

PLoS ONE, 13(2).

co-author countries: United States of America 🇺🇸

Contributors: J. Horney*, G. Casillas*, E. Baker*, K. Stone*, K. Kirsch*, K. Camargo*, T. Wade*, T. McDonald*

MeSH headings : Cyclonic Storms; Environmental Pollutants / analysis; Gas Chromatography-Mass Spectrometry; Polycyclic Aromatic Hydrocarbons / analysis; Residence Characteristics; Texas
Source: ORCID
Added: December 5, 2019

2018 journal article

Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations

Electrophoresis, 39(24), 3148–3155.

co-author countries: United States of America 🇺🇸
author keywords: Chiral separations; Cyclodextrins; Enantiomers; Ion mobility-mass spectrometry; Structures for lossless ion manipulations
MeSH headings : Amino Acids / analysis; Amino Acids / chemistry; Amino Acids / isolation & purification; Cyclodextrins / chemistry; Ions; Mass Spectrometry / methods; Models, Molecular; Stereoisomerism
Source: ORCID
Added: December 5, 2019

2018 journal article

Editorial overview: Omics

Current Opinion in Chemical Biology, 42, A1–A2.

By: P. Barran* & E. Baker*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸

Contributors: P. Barran* & E. Baker*

MeSH headings : Genomics / methods; Humans; Ion Mobility Spectrometry / methods; Lipid Metabolism; Mass Spectrometry / methods; Metabolomics / methods; Proteomics / methods
Source: ORCID
Added: December 5, 2019

2018 journal article

Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry

Bioanalysis, 10(5), 279–289.

co-author countries: United States of America 🇺🇸

Contributors: J. Kyle*, N. Aly*, X. Zheng*, K. Burnum-Johnson*, R. Smith* & E. Baker*

author keywords: collision cross-section; ion mobility spectrometry; lipid mediators
MeSH headings : Animals; Arachidonic Acid / chemistry; Chromatography, Liquid; Docosahexaenoic Acids / analogs & derivatives; Docosahexaenoic Acids / chemistry; Humans; Influenza A virus / growth & development; Ion Mobility Spectrometry; Isomerism; Linoleic Acid / chemistry; Lung / virology; Mass Spectrometry; Mice; Tissue Extracts / chemistry
Source: ORCID
Added: December 5, 2019

2018 journal article

Guest editor's personal foreward

International Journal of Mass Spectrometry, 427, 1–3.

By: E. Baker* & R. Ogorzalek Loo*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker* & R. Ogorzalek Loo*

Source: ORCID
Added: December 5, 2019

2018 journal article

High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men

Aging Cell, 17(2).

By: E. Orwoll*, J. Wiedrick*, J. Jacobs*, E. Baker*, P. Piehowski*, V. Petyuk*, Y. Gao*, T. Shi* ...

co-author countries: United States of America 🇺🇸

Contributors: E. Orwoll*, J. Wiedrick*, J. Jacobs*, E. Baker*, P. Piehowski*, V. Petyuk*, Y. Gao*, T. Shi* ...

author keywords: aging; biomarker; inflammation; men; mortality; proteomics
MeSH headings : Biomarkers / chemistry; Humans; Male; Mortality; Proteomics / methods
Source: ORCID
Added: December 5, 2019

2018 journal article

Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility-Mass Spectrometry

Analytical Chemistry, 90(18), 10889–10896.

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Sequence; Bacterial Proteins / analysis; Bacterial Proteins / isolation & purification; Chromatography, Reverse-Phase / methods; Humans; Ion Mobility Spectrometry / methods; Isomerism; Mass Spectrometry / methods; Phosphopeptides / analysis; Phosphopeptides / isolation & purification; Shewanella / chemistry
Source: ORCID
Added: December 5, 2019

2018 content posted

Lactobacillus acidophilus disrupts collaborative multispecies bile acid metabolism

By: S. Dautel*, N. Khan*, K. Brandvold*, C. Brislawn*, J. Hutchison*, K. Weitz*, H. Heyman*, H. Song* ...

co-author countries: United States of America 🇺🇸
Sources: Crossref, ORCID
Added: December 16, 2019

2018 journal article

Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses

Analytical Chemistry, 90(2), 1292–1300.

co-author countries: Australia 🇦🇺 United States of America 🇺🇸
MeSH headings : Chromatography, High Pressure Liquid / instrumentation; Equipment Design; Humans; Ion Mobility Spectrometry / instrumentation; Isomerism; Lipids / analysis; Lipids / blood; Ozone / chemistry; Tandem Mass Spectrometry / instrumentation
Source: ORCID
Added: December 5, 2019

2018 journal article

Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations

Analytical Chemistry, 90(18), 11086–11091.

co-author countries: United States of America 🇺🇸
MeSH headings : Bile Acids and Salts / chemistry; Bile Acids and Salts / isolation & purification; Cyclodextrins / chemistry; Ions / chemistry; Ions / isolation & purification; Isomerism; Mass Spectrometry / economics; Mass Spectrometry / methods; Models, Molecular; Time Factors
Source: ORCID
Added: December 5, 2019

2018 journal article

Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches

Current Opinion in Chemical Biology, 42, 111–118.

By: X. Zheng*, R. Smith* & E. Baker*

co-author countries: United States of America 🇺🇸

Contributors: X. Zheng*, R. Smith* & E. Baker*

MeSH headings : Ion Mobility Spectrometry / methods; Isomerism; Lipids / chemistry; Lipids / classification; Lipids / isolation & purification; Mass Spectrometry / methods; Molecular Structure
Source: ORCID
Added: December 5, 2019

2018 journal article

The MPLEx protocol for multi-omic analyses of soil samples

Journal of Visualized Experiments, 2018(135).

co-author countries: United States of America 🇺🇸

Contributors: C. Nicora*, K. Burnum-Johnson*, E. Nakayasu*, C. Casey*, R. White*, T. Chowdhury*, J. Kyle*, Y. Kim* ...

author keywords: Chemistry; Issue 135; MPLEx; Metaproteomics; Lipidomics; Metabolomics; Multi-omics; Mass Spectrometry
MeSH headings : Mass Spectrometry / methods; Metabolomics / methods; Soil / chemistry
Source: ORCID
Added: December 5, 2019

2018 journal article

Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS

Journal of the American Society for Mass Spectrometry, 29(5), 817–826.

By: A. Garabedian*, P. Benigni*, C. Ramirez*, E. Baker*, T. Liu*, R. Smith*, F. Fernandez-Lima*

co-author countries: United States of America 🇺🇸

Contributors: A. Garabedian*, P. Benigni*, C. Ramirez*, E. Baker*, T. Liu*, R. Smith*, F. Fernandez-Lima*

author keywords: Discovery and targeted monitoring; Trapped ion mobility spectrometry; Mass; Spectrometry; Biomarker detection; Quantitative proteomics
MeSH headings : Amino Acid Sequence; Biomarkers, Tumor / analysis; Breast Neoplasms / chemistry; Breast Neoplasms / pathology; Female; Humans; Ion Mobility Spectrometry / methods; Peptides / analysis; Proteomics / methods; Spectrometry, Mass, Electrospray Ionization / methods; Tandem Mass Spectrometry / methods; Workflow
Source: ORCID
Added: December 5, 2019

2018 journal article

Unraveling the isomeric heterogeneity of glycans: Ion mobility separations in structures for lossless ion manipulations

Chemical Communications, 54(83), 11701–11704.

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: December 5, 2019

2018 journal article

Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions

Journal of the American Society for Mass Spectrometry, 29(11), 2182–2188.

By: B. MacLean*, B. Pratt*, J. Egertson*, M. MacCoss*, R. Smith* & E. Baker*

co-author countries: United States of America 🇺🇸

Contributors: B. MacLean*, B. Pratt*, J. Egertson*, M. MacCoss*, R. Smith* & E. Baker*

author keywords: Ion mobility spectrometry; Skyline; Data independent acquisition; Proteomics
Source: ORCID
Added: December 5, 2019

2018 journal article

Utilizing Ion Mobility Spectrometry and Mass Spectrometry for the Analysis of Polycyclic Aromatic Hydrocarbons, Polychlorinated Biphenyls, Polybrominated Diphenyl Ethers and Their Metabolites

Analytica Chimica Acta, 1037, 265–273.

By: X. Zheng*, K. Dupuis*, N. Aly*, Y. Zhou*, F. Smith*, K. Tang*, R. Smith*, E. Baker*

co-author countries: United States of America 🇺🇸

Contributors: X. Zheng*, K. Dupuis*, N. Aly*, Y. Zhou*, F. Smith*, K. Tang*, R. Smith*, E. Baker*

author keywords: Ion mobility spectrometry; Collision cross section; Xenobiotics; Polycyclic aromatic hydrocarbons; Polychlorinated biphenyls; Polybrominated diphenyl ethers; Electrospray ionization; Atmospheric pressure chemical ionization; Atmospheric pressure photoionization
MeSH headings : Chromatography, Liquid; Halogenated Diphenyl Ethers / analysis; Halogenated Diphenyl Ethers / metabolism; Ion Mobility Spectrometry; Mass Spectrometry; Molecular Structure; Polybrominated Biphenyls / analysis; Polybrominated Biphenyls / metabolism; Polycyclic Aromatic Hydrocarbons / analysis; Polycyclic Aromatic Hydrocarbons / metabolism
Sources: ORCID, Web Of Science
Added: December 5, 2019

2017 journal article

A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry

Chemical Science, 8(11), 7724–7736.

By: X. Zheng*, N. Aly*, Y. Zhou*, K. Dupuis*, A. Bilbao*, V. Paurus*, D. Orton*, R. Wilson* ...

co-author countries: United States of America 🇺🇸

Contributors: X. Zheng*, N. Aly*, Y. Zhou*, K. Dupuis*, A. Bilbao*, V. Paurus*, D. Orton*, R. Wilson* ...

Source: ORCID
Added: December 5, 2019

2017 journal article

An Interlaboratory Evaluation of Drift Tube Ion Mobility-Mass Spectrometry Collision Cross Section Measurements

Analytical Chemistry, 89(17), 9048–9055.

By: S. Stow*, T. Causon*, X. Zheng*, R. Kurulugama*, T. Mairinger*, J. May*, E. Rennie*, E. Baker* ...

co-author countries: Austria 🇦🇹 United States of America 🇺🇸

Contributors: S. Stow*, T. Causon*, X. Zheng*, R. Kurulugama*, T. Mairinger*, J. May*, E. Rennie*, E. Baker* ...

MeSH headings : Calibration; Ion Mobility Spectrometry / methods; Laboratories / standards; Lipids / chemistry; Mass Spectrometry / methods; Molecular Structure; Nitrogen / chemistry; Proteins / chemistry; Reproducibility of Results
Source: ORCID
Added: December 5, 2019

2017 journal article

Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging

Placenta, 60, S67–S72.

By: K. Burnum-Johnson*, E. Baker* & T. Metz*

co-author countries: United States of America 🇺🇸

Contributors: K. Burnum-Johnson*, E. Baker* & T. Metz*

author keywords: Deep placentation; Pregnancy complications; Mass spectrometry imaging; Metabolome; Lipidome; Ion mobility spectrometry-mass spectrometry; Nano-DESI
MeSH headings : Animals; Chromatography, High Pressure Liquid; Embryo Implantation; Female; Humans; Ion Mobility Spectrometry; Lipid Metabolism; Metabolomics / methods; Metabolomics / trends; Models, Biological; Placenta / metabolism; Placenta / physiology; Placenta / physiopathology; Placentation; Pregnancy; Pregnancy Complications / metabolism; Pregnancy Complications / physiopathology; Spectrometry, Mass, Electrospray Ionization; Spectrometry, Mass, Secondary Ion
Source: ORCID
Added: December 5, 2019

2017 journal article

Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies

Rapid Communications in Mass Spectrometry, 31(5), 447–456.

co-author countries: United States of America 🇺🇸

Contributors: J. Kyle*, C. Casey*, K. Stratton*, E. Zink*, Y. Kim*, X. Zheng*, M. Monroe*, K. Weitz* ...

Source: ORCID
Added: December 5, 2019

2017 journal article

Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM)

Analytical Chemistry, 89(12), 6432–6439.

By: L. Deng*, S. Garimella*, A. Hamid*, I. Webb*, I. Attah*, R. Norheim*, S. Prost*, X. Zheng* ...

co-author countries: United States of America 🇺🇸

Contributors: L. Deng*, S. Garimella*, A. Hamid*, I. Webb*, I. Attah*, R. Norheim*, S. Prost*, X. Zheng* ...

MeSH headings : Ion Mobility Spectrometry / instrumentation; Ions / chemistry; Mass Spectrometry / instrumentation; Peptides / analysis
Source: ORCID
Added: December 5, 2019

2017 chapter

Conventional and Advanced Separations in Mass Spectrometry-Based Metabolomics: Methodologies and Applications

In Encyclopedia of Spectroscopy and Spectrometry (pp. 376–384).

By: H. Heyman*, X. Zhang*, K. Tang*, E. Baker* & T. Metz*

co-author countries: United States of America 🇺🇸

Contributors: H. Heyman*, X. Zhang*, K. Tang*, E. Baker* & T. Metz*

Sources: ORCID, Crossref
Added: December 5, 2019

2017 book

Coupling front-end separations, ion mobility spectrometry, and mass spectrometry for enhanced multidimensional biological and environmental analyses

In Annual Review of Analytical Chemistry (Vol. 10, pp. 71–92).

By: X. Zheng*, R. Wojcik*, X. Zhang*, Y. Ibrahim*, K. Burnum-Johnson*, D. Orton*, M. Monroe*, R. Moore*, R. Smith*, E. Baker*

co-author countries: United States of America 🇺🇸

Contributors: X. Zheng*, R. Wojcik*, X. Zhang*, Y. Ibrahim*, K. Burnum-Johnson*, D. Orton*, M. Monroe*, R. Moore*, R. Smith*, E. Baker*

author keywords: drift tube IMS; gas chromatography; supercritical fluid chromatography; liquid chromatography; solid-phase extraction; capillary electrophoresis; field asymmetric ion mobility spectrometry; microfluidics; structure for lossless ion manipulations
MeSH headings : Bacterial Toxins / analysis; Chromatography, Liquid; Chromatography, Supercritical Fluid; Environmental Monitoring; Gases / chemistry; Ions / chemistry; Mass Spectrometry / instrumentation; Mass Spectrometry / methods; Microfluidics / methods; Pharmaceutical Preparations / analysis
Source: ORCID
Added: December 5, 2019

2017 journal article

Distinguishing D- and L-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry

Chemical Communications, 53(56), 7913–7916.

co-author countries: United States of America 🇺🇸
MeSH headings : Amyloid beta-Peptides / chemistry; Aspartic Acid / chemistry; Ion Mobility Spectrometry / methods; Isoaspartic Acid / chemistry; Peptide Fragments / chemistry; Protein Conformation; Stereoisomerism
Sources: ORCID, Web Of Science
Added: December 5, 2019

2017 journal article

Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses

Analytical and Bioanalytical Chemistry, 409(2), 467–476.

By: X. Zheng*, X. Zhang*, N. Schocker*, R. Renslow*, D. Orton*, J. Khamsi*, R. Ashmus*, I. Almeida* ...

co-author countries: United States of America 🇺🇸

Contributors: X. Zheng*, X. Zhang*, N. Schocker*, R. Renslow*, D. Orton*, J. Khamsi*, R. Ashmus*, I. Almeida* ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Glycans; O-Glycans; Isomers
MeSH headings : Chemistry Techniques, Analytical / methods; Ion Mobility Spectrometry; Ions / chemistry; Isomerism; Mass Spectrometry; Metals / chemistry; Polysaccharides / chemistry; Polysaccharides / isolation & purification
Source: ORCID
Added: December 5, 2019

2017 journal article

Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics

Journal of Bone and Mineral Research, 32(7), 1559–1567.

By: C. Nielson*, J. Wiedrick*, J. Shen*, J. Jacobs*, E. Baker*, A. Baraff*, P. Piehowski*, C. Lee* ...

co-author countries: United States of America 🇺🇸

Contributors: C. Nielson*, J. Wiedrick*, J. Shen*, J. Jacobs*, E. Baker*, A. Baraff*, P. Piehowski*, C. Lee* ...

author keywords: BIOCHEMICAL MARKERS OF BONE TURNOVER; OSTEOPOROSIS; GENERAL POPULATION STUDIES
MeSH headings : Aged; Aged, 80 and over; Biomarkers / blood; Bone Density; Hip; Hip Fractures / blood; Humans; Male; Osteoporosis / blood; Osteoporosis / pathology; Peptides / blood; Proteome / metabolism; Proteomics
Source: ORCID
Added: December 5, 2019

2017 journal article

Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go?

Bioanalysis, 9(1), 81–98.

co-author countries: Austria 🇦🇹 Switzerland 🇨🇭 United States of America 🇺🇸
author keywords: collision cross section; exposome; ion mobility spectrometry; mass spectrometry; metabolome
MeSH headings : Animals; Chromatography, Liquid / methods; Computational Biology / methods; High-Throughput Screening Assays / methods; Humans; Mass Spectrometry / methods; Metabolome; Workflow
Source: ORCID
Added: December 5, 2019

2017 journal article

Ligand induced structural isomerism in phosphine coordinated gold clusters revealed by ion mobility mass spectrometry

Chemical Communications, 53(53), 7389–7392.

By: M. Ligare*, E. Baker*, J. Laskin* & G. Johnson*

co-author countries: United States of America 🇺🇸

Contributors: M. Ligare*, E. Baker*, J. Laskin* & G. Johnson*

Source: ORCID
Added: December 5, 2019

2017 journal article

Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations

International Journal of Molecular Sciences, 18(1).

co-author countries: United States of America 🇺🇸
author keywords: lipids; glycolipids; isomers; ion mobility spectrometry
MeSH headings : Glycolipids / chemistry; Glycolipids / isolation & purification; Isomerism; Mass Spectrometry / methods
Source: ORCID
Added: December 5, 2019

2017 journal article

New frontiers for mass spectrometry based upon structures for lossless ion manipulations

Analyst, 142(7), 1010–1021.

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: December 5, 2019

2017 journal article

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association

Bioinformatics (Oxford, England), 33(17), 2715–2722.

By: J. Ma*, C. Casey*, X. Zheng*, Y. Ibrahim*, C. Wilkins*, R. Renslow*, D. Thomas*, S. Payne* ...

co-author countries: United States of America 🇺🇸

Contributors: J. Ma*, C. Casey*, X. Zheng*, Y. Ibrahim*, C. Wilkins*, R. Renslow*, D. Thomas*, S. Payne* ...

MeSH headings : Algorithms; Computational Biology / methods; Mass Spectrometry / methods; Software
Source: ORCID
Added: December 5, 2019

2017 journal article

Profiling microbial lignocellulose degradation and utilization by emergent omics technologies

Critical Reviews in Biotechnology, 37(5), 626–640.

By: J. Rosnow*, L. Anderson*, R. Nair*, E. Baker* & A. Wright*

co-author countries: United States of America 🇺🇸

Contributors: J. Rosnow*, L. Anderson*, R. Nair*, E. Baker* & A. Wright*

author keywords: Genomics; proteomics; transcriptomics; NMR; fluorescence-activated cell sorting; metabolomics; activity-based probes
MeSH headings : Biofuels; Lignin / metabolism
Sources: ORCID, Web Of Science
Added: December 5, 2019

2017 journal article

Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations

Analytical Chemistry, 89(8), 4628–4634.

By: L. Deng*, I. Webb*, S. Garimella*, A. Hamid*, X. Zheng*, R. Norheim*, S. Prost*, G. Anderson* ...

co-author countries: United States of America 🇺🇸

Contributors: L. Deng*, I. Webb*, S. Garimella*, A. Hamid*, X. Zheng*, R. Norheim*, S. Prost*, G. Anderson* ...

MeSH headings : Humans; Ion Mobility Spectrometry / methods; Ions / chemistry; Isomerism; Milk, Human / metabolism; Oligosaccharides / chemistry
Source: ORCID
Added: December 5, 2019

2017 journal article

Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry

Journal of Physical Chemistry Letters, 8(7), 1381–1388.

By: X. Zheng*, R. Renslow*, M. Makola*, I. Webb*, L. Deng*, D. Thomas*, N. Govind*, Y. Ibrahim* ...

co-author countries: United States of America 🇺🇸 South Africa 🇿🇦

Contributors: X. Zheng*, R. Renslow*, M. Makola*, I. Webb*, L. Deng*, D. Thomas*, N. Govind*, Y. Ibrahim* ...

Source: ORCID
Added: December 5, 2019

2016 journal article

A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation

Journal of the American Society For Mass Spectrometry, 27(7), 1285–1288.

By: I. Webb*, S. Garimella*, R. Norheim*, E. Baker*, Y. Ibrahim* & R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: I. Webb*, S. Garimella*, R. Norheim*, E. Baker*, Y. Ibrahim* & R. Smith*

author keywords: Collision induced dissociation; Ion mobility spectrometry; rf Confinement; Ion optics; Peptide fragmentation; Manipulation; Conveyor
Source: ORCID
Added: December 5, 2019

2016 journal article

A multi-omic future for microbiome studies

Nature Microbiology, 1(5).

By: J. Jansson* & E. Baker*

co-author countries: United States of America 🇺🇸

Contributors: J. Jansson* & E. Baker*

MeSH headings : Gene Expression Profiling; Humans; Metabolomics; Metagenomics; Microbiota; Proteomics
Source: ORCID
Added: December 5, 2019

2016 journal article

Achieving High Resolution Ion Mobility Separations Using Traveling Waves in Compact Multiturn Structures for Lossless Ion Manipulations

Analytical Chemistry, 88(18), 8949–8956.

By: A. Hamid*, S. Garimella*, Y. Ibrahim*, L. Deng*, X. Zheng*, I. Webb*, G. Anderson*, S. Prost* ...

co-author countries: United States of America 🇺🇸

Contributors: A. Hamid*, S. Garimella*, Y. Ibrahim*, L. Deng*, X. Zheng*, I. Webb*, G. Anderson*, S. Prost* ...

MeSH headings : Algorithms; Amino Acid Sequence; Bradykinin / analysis; Equipment Design; Ions / chemistry; Mass Spectrometry / methods; Peptides / analysis
Source: ORCID
Added: December 5, 2019

2016 journal article

Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform

Analytical Chemistry, 88(24), 12152–12160.

By: Y. Ibrahim*, S. Garimella*, S. Prost*, R. Wojcik*, R. Norheim*, E. Baker*, I. Rusyn*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: Y. Ibrahim*, S. Garimella*, S. Prost*, R. Wojcik*, R. Norheim*, E. Baker*, I. Rusyn*, R. Smith*

MeSH headings : Algorithms; Animals; Artifacts; Cattle; Equipment Design; Ion Mobility Spectrometry / instrumentation; Ions / analysis; Mass Spectrometry / instrumentation; Petroleum / analysis; Phosphopyruvate Hydratase / chemistry; Proteomics / instrumentation; Serum Albumin, Bovine / chemistry
Source: ORCID
Added: December 5, 2019

2016 journal article

Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations

Analytical Chemistry, 88(20), 10143–10150.

By: L. Deng*, Y. Ibrahim*, S. Garimella*, I. Webb*, A. Hamid*, R. Norheim*, S. Prost*, J. Sandoval*, E. Baker*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: L. Deng*, Y. Ibrahim*, S. Garimella*, I. Webb*, A. Hamid*, R. Norheim*, S. Prost*, J. Sandoval*, E. Baker*, R. Smith*

Source: ORCID
Added: December 5, 2019

2016 journal article

Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry

Chemistryselect, 1(10), 2396–2399.

By: L. Deng*, Y. Ibrahim*, E. Baker*, N. Aly*, A. Hamid*, X. Zhang*, X. Zheng*, S. Garimella* ...

co-author countries: United States of America 🇺🇸

Contributors: L. Deng*, Y. Ibrahim*, E. Baker*, N. Aly*, A. Hamid*, X. Zhang*, X. Zheng*, S. Garimella* ...

author keywords: Structures for Lossless Ion Manipulations (SLIM); Ion Mobility Spectrometry; Mass Spectrometry; Isomers
Source: ORCID
Added: December 5, 2019

2016 journal article

Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform

Lab on a Chip, 16(9), 1544–1548.

By: Y. Cong*, S. Katipamula*, C. Trader*, D. Orton*, T. Geng*, E. Baker*, R. Kelly*

co-author countries: United States of America 🇺🇸

Contributors: Y. Cong*, S. Katipamula*, C. Trader*, D. Orton*, T. Geng*, E. Baker*, R. Kelly*

MeSH headings : Algorithms; Automation, Laboratory; Carbonic Anhydrase I / antagonists & inhibitors; Carbonic Anhydrase I / chemistry; Carbonic Anhydrase I / metabolism; Carbonic Anhydrase Inhibitors / chemistry; Carbonic Anhydrase Inhibitors / metabolism; Carbonic Anhydrase Inhibitors / pharmacology; Diffusion; Diuretics / chemistry; Diuretics / metabolism; Diuretics / pharmacology; Equipment Design; Furosemide / chemistry; Furosemide / metabolism; Humans; Kinetics; Lab-On-A-Chip Devices; Ligands; Reproducibility of Results; Spectrometry, Mass, Electrospray Ionization
Source: ORCID
Added: December 5, 2019

2016 journal article

Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations

Analytical Chemistry, 88(3), 1728–1733.

By: T. Chen*, Y. Ibrahim*, I. Webb*, S. Garimella*, X. Zhang*, A. Hamid*, L. Deng*, W. Karnesky* ...

co-author countries: United States of America 🇺🇸

Contributors: T. Chen*, Y. Ibrahim*, I. Webb*, S. Garimella*, X. Zhang*, A. Hamid*, L. Deng*, W. Karnesky* ...

MeSH headings : Humans; Ions / chemistry; Mass Spectrometry / methods; Peptides / analysis; Protein Conformation
Source: ORCID
Added: December 5, 2019

2016 journal article

SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids

Clinical Mass Spectrometry, 2, 1–10.

By: X. Zhang*, M. Romm*, X. Zheng*, E. Zink*, Y. Kim*, K. Burnum-Johnson*, D. Orton*, A. Apffel* ...

co-author countries: United States of America 🇺🇸

Contributors: X. Zhang*, M. Romm*, X. Zheng*, E. Zink*, Y. Kim*, K. Burnum-Johnson*, D. Orton*, A. Apffel* ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Metabolomics; Exposomics
Source: ORCID
Added: December 5, 2019

2016 journal article

Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry

Molecular &Amp; Cellular Proteomics, 15(12), 3694–3705.

By: K. Burnum-Johnson*, S. Nie*, C. Casey*, M. Monroe*, D. Orton*, Y. Ibrahim*, M. Gritsenko*, T. Clauss* ...

co-author countries: United States of America 🇺🇸

Contributors: K. Burnum-Johnson*, S. Nie*, C. Casey*, M. Monroe*, D. Orton*, Y. Ibrahim*, M. Gritsenko*, T. Clauss* ...

MeSH headings : Animals; Breast Neoplasms / metabolism; Chromatography, Liquid / methods; Female; Humans; Mass Spectrometry / methods; Mice; Neoplasm Transplantation; Peptides / analysis; Proteome / isolation & purification; Proteomics / methods
Source: ORCID
Added: December 5, 2019

2016 journal article

Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry

Journal of the American Society For Mass Spectrometry, 27(6), 1128–1135.

By: S. Garimella*, Y. Ibrahim*, K. Tang*, I. Webb*, E. Baker*, A. Tolmachev*, T. Chen*, G. Anderson*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: S. Garimella*, Y. Ibrahim*, K. Tang*, I. Webb*, E. Baker*, A. Tolmachev*, T. Chen*, G. Anderson*, R. Smith*

author keywords: Ion mobility spectrometry; Diffusion; Peak compression; High resolution IMS
MeSH headings : Ion Mobility Spectrometry; Ions; Pressure
Source: ORCID
Added: December 5, 2019

2016 journal article

Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming

Analytical Chemistry, 88(23), 11877–11885.

By: S. Garimella*, A. Hamid*, L. Deng*, Y. Ibrahim*, I. Webb*, E. Baker*, S. Prost*, R. Norheim*, G. Anderson*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: S. Garimella*, A. Hamid*, L. Deng*, Y. Ibrahim*, I. Webb*, E. Baker*, S. Prost*, R. Norheim*, G. Anderson*, R. Smith*

MeSH headings : Electrodes; Ions / chemistry; Ions / isolation & purification; Mass Spectrometry / instrumentation; Mass Spectrometry / methods; Molecular Structure
Source: ORCID
Added: December 5, 2019

2016 journal article

Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers

Chemical Communications, 52(19), 3773–3776.

By: R. Liu, S. Cheng*, E. Baker*, R. Smith*, X. Zeng* & B. Gong*

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: R. Liu, S. Cheng*, E. Baker*, R. Smith*, X. Zeng* & B. Gong*

MeSH headings : Amides / chemistry; Dimerization; Hydrogen Bonding; Proton Magnetic Resonance Spectroscopy
Source: ORCID
Added: December 5, 2019

2016 journal article

Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers (vol 52, pg 3773, 2016)

Chemical Communications, 52(29), 5205.

By: R. Liu, S. Chen*, E. Baker*, R. Smith*, X. Zeng* & B. Gong*

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: R. Liu, S. Chen*, E. Baker*, R. Smith*, X. Zeng* & B. Gong*

Source: ORCID
Added: December 5, 2019

2016 journal article

The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates

Molecular Ecology, 25(22), 5795–5805.

co-author countries: United States of America 🇺🇸

Contributors: L. Khadempour*, K. Burnum-Johnson*, E. Baker*, C. Nicora*, B. Webb-Robertson*, R. White*, M. Monroe*, E. Huang*, R. Smith*, C. Currie*

author keywords: fungi; leaf-cutter ants; metaproteomics; microbial ecology; symbiosis
MeSH headings : Agaricales / enzymology; Animals; Ants / microbiology; Flowers / metabolism; Fungal Proteins / metabolism; Plant Leaves / metabolism; Plants / metabolism; Proteomics; Symbiosis
Source: ORCID
Added: December 5, 2019

2016 journal article

The past, present and future of microbiome analyses

Nature Protocols, 11(11), 4–8.

By: R. White*, S. Callister*, R. Moore*, E. Baker* & J. Jansson*

co-author countries: United States of America 🇺🇸

Contributors: R. White*, S. Callister*, R. Moore*, E. Baker* & J. Jansson*

Source: ORCID
Added: December 5, 2019

2016 journal article

Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13 m Serpentine Path Length Structures for Lossless Ion Manipulations Module

Analytical Chemistry, 88(18), 8957–8964.

By: L. Deng*, Y. Ibrahim*, A. Hamid*, S. Garimella*, I. Webb*, X. Zheng*, S. Prost*, J. Sandoval* ...

co-author countries: United States of America 🇺🇸

Contributors: L. Deng*, Y. Ibrahim*, A. Hamid*, S. Garimella*, I. Webb*, X. Zheng*, S. Prost*, J. Sandoval* ...

MeSH headings : Animals; Cattle; Electrodes; Electromagnetic Phenomena; Equipment Design; Ions / analysis; Isomerism; Mass Spectrometry / instrumentation; Mass Spectrometry / methods; Oligosaccharides / analysis; Oligosaccharides / chemistry; Peptides / analysis; Serum Albumin, Bovine / chemistry
Source: ORCID
Added: December 5, 2019

2016 journal article

Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry

Analyst, 141(5), 1649–1659.

By: J. Kyle*, X. Zhang*, K. Weitz*, M. Monroe*, Y. Ibrahim*, R. Moore*, J. Cha*, X. Sun* ...

co-author countries: United States of America 🇺🇸

Contributors: J. Kyle*, X. Zhang*, K. Weitz*, M. Monroe*, Y. Ibrahim*, R. Moore*, J. Cha*, X. Sun* ...

MeSH headings : Chromatography, Liquid / methods; Fatty Acids / chemistry; Fatty Acids / metabolism; Lipids / chemistry; Lipids / isolation & purification; Mass Spectrometry / methods; Metabolomics / methods; Stereoisomerism
Source: ORCID
Added: December 5, 2019

2015 journal article

Development of a new ion mobility (quadrupole) time-of-flight mass spectrometer

International Journal of Mass Spectrometry, 377(1), 655–662.

By: Y. Ibrahim*, E. Baker*, W. Danielson*, R. Norheim*, D. Prior*, G. Anderson*, M. Belov*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: Y. Ibrahim*, E. Baker*, W. Danielson*, R. Norheim*, D. Prior*, G. Anderson*, M. Belov*, R. Smith*

Source: ORCID
Added: December 5, 2019

2015 journal article

Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations

Analyst, 140(20), 6955–6963.

co-author countries: United States of America 🇺🇸

Contributors: X. Zhang*, Y. Ibrahim*, T. Chen*, J. Kyle*, R. Norheim*, M. Monroe*, R. Smith*, E. Baker*

MeSH headings : Animals; Cattle; Mass Spectrometry / methods; Motion; Peptide Fragments / chemistry; Peptide Fragments / isolation & purification; Proteolysis; Serum Albumin, Bovine / chemistry; Serum Albumin, Bovine / metabolism; Trypsin / metabolism
Source: ORCID
Added: December 5, 2019

2015 journal article

Enhancing bottom-up and top-down proteomic measurements with ion mobility separations

Proteomics, 15(16), 2766–2776.

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, K. Burnum-Johnson*, Y. Ibrahim*, D. Orton*, M. Monroe*, R. Kelly*, R. Moore*, X. Zhang* ...

author keywords: Ion mobility separations; Ion mobility spectrometry; Mass spectrometry; Proteomics
MeSH headings : Chromatography, Liquid / methods; Complex Mixtures; Mass Spectrometry / methods; Peptides / analysis; Peptides / chemistry; Proteins / analysis; Proteins / chemistry; Proteomics / methods
Source: ORCID
Added: December 5, 2019

2015 journal article

Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations

Analytical Chemistry, 87(12), 6010–6016.

By: X. Zhang*, S. Garimella*, S. Prost*, I. Webb*, T. Chen*, K. Tang*, A. Tolmachev*, R. Norheim* ...

co-author countries: United States of America 🇺🇸

Contributors: X. Zhang*, S. Garimella*, S. Prost*, I. Webb*, T. Chen*, K. Tang*, A. Tolmachev*, R. Norheim* ...

MeSH headings : Electrodes; Ions / analysis; Mass Spectrometry / instrumentation
Sources: ORCID, Web Of Science
Added: December 5, 2019

2015 journal article

Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90° turn and a switch.

The Analyst, 140(20), 6845–6852.

By: S. Garimella*, Y. Ibrahim*, I. Webb*, A. Ipsen*, T. Chen*, A. Tolmachev*, E. Baker*, G. Anderson*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: S. Garimella*, Y. Ibrahim*, I. Webb*, A. Ipsen*, T. Chen*, A. Tolmachev*, E. Baker*, G. Anderson*, R. Smith*

MeSH headings : Mass Spectrometry / methods; Models, Theoretical; Motion; Pressure
Source: ORCID
Added: December 5, 2019

2015 chapter

Mass Spectrometry for Biomarker Development

In V. R. Preedy & V. B. Patel (Eds.), General Methods in Biomarker Research and their Applications (pp. 17–48). New York, NY: Springer.

By: C. Wu, T. Liu, E. Baker, K. Rodland & R. Smith

Ed(s): V. Preedy & V. Patel

Source: NC State University Libraries
Added: November 14, 2020

2015 book

Mass spectrometry for biomarker development

In General Methods in Biomarker Research and their Applications (Vol. 1-2, pp. 17–48).

co-author countries: United States of America 🇺🇸

Contributors: C. Wu*, T. Liu*, E. Baker*, K. Rodland* & R. Smith*

Source: ORCID
Added: December 5, 2019

2015 journal article

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

Journal of Biological Chemistry, 290(24), 15337–15349.

By: J. Cha*, K. Burnum-Johnson*, A. Bartos*, Y. Li*, E. Baker*, S. Tilton*, B. Webb-Robertson*, P. Piehowski* ...

co-author countries: Japan 🇯🇵 United States of America 🇺🇸

Contributors: J. Cha*, K. Burnum-Johnson*, A. Bartos*, Y. Li*, E. Baker*, S. Tilton*, B. Webb-Robertson*, P. Piehowski* ...

MeSH headings : Animals; Embryonic Development / genetics; Female; Genes, Homeobox; Homeodomain Proteins / genetics; Homeodomain Proteins / physiology; Inflammation / genetics; MSX1 Transcription Factor / genetics; MSX1 Transcription Factor / physiology; Mice; Mice, Knockout; Muscle, Smooth / pathology; Pregnancy; Uterus / metabolism; Uterus / pathology
Source: ORCID
Added: December 5, 2019

2014 journal article

Advancing the High Throughput Identification of Liver Fibrosis Protein Signatures Using Multiplexed Ion Mobility Spectrometry*

Molecular &Amp; Cellular Proteomics, 13(4), 1119–1127.

By: E. Baker*, K. Burnum-Johnson*, J. Jacobs*, D. Diamond*, R. Brown*, Y. Ibrahim*, D. Orton*, P. Piehowski* ...

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, K. Burnum-Johnson*, J. Jacobs*, D. Diamond*, R. Brown*, Y. Ibrahim*, D. Orton*, P. Piehowski* ...

MeSH headings : Chromatography, Liquid; Humans; Ions / chemistry; Liver Cirrhosis / blood; Liver Cirrhosis / complications; Liver Cirrhosis / metabolism; Liver Transplantation; Mass Spectrometry; Proteome / metabolism; Proteomics / instrumentation; Proteomics / methods
Source: ORCID
Added: December 5, 2019

2014 journal article

Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements

The Journal of the American Society for Mass Spectrometry, 25(12), 2020–2027.

By: S. Prost*, K. Crowell*, E. Baker*, Y. Ibrahim*, B. Clowers*, M. Monroe*, G. Anderson*, R. Smith*, S. Payne*

co-author countries: United States of America 🇺🇸

Contributors: S. Prost*, K. Crowell*, E. Baker*, Y. Ibrahim*, B. Clowers*, M. Monroe*, G. Anderson*, R. Smith*, S. Payne*

author keywords: Ion mobility; Computational proteomics; Hadamard transform; Bioinformatics; Sensitivity; Data analysis
MeSH headings : Algorithms; Artifacts; Fourier Analysis; Mass Spectrometry / methods; Proteomics
Sources: ORCID, Web Of Science
Added: December 5, 2019

2014 article

Focus on Advancing High Performance Mass Spectrometry, Honoring Dr. Richard D. Smith, Recipient of the 2013 Award for a Distinguished Contribution in Mass Spectrometry

Baker, E. S., Muddiman, D. C., & Loo, J. A. (2014, December). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 25, pp. 1997–1999.

By: E. Baker*, D. Muddiman n & J. Loo*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, D. Muddiman n & J. Loo*

Sources: ORCID, Web Of Science
Added: August 6, 2018

2014 journal article

Improving Ion Mobility Measurement Sensitivity by Utilizing Helium in an Ion Funnel Trap

Analytical Chemistry, 86(11), 5295–5299.

co-author countries: United States of America 🇺🇸
MeSH headings : Algorithms; Buffers; Helium / analysis; Ions / chemistry; Mass Spectrometry; Nitrogen / chemistry; Protein Hydrolysates / chemistry; Serum Albumin, Bovine / chemistry
Source: ORCID
Added: December 5, 2019

2013 journal article

Combining heavy isotope labeling, chemical cross-linking, ion mobility spectrometry, and mass spectrometry to study the structure of homomultimeric protein complexes

Abstracts of Papers of the American Chemical Society, 246. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000329618401034&KeyUID=WOS:000329618401034

By: E. Merkley, E. Baker, K. Crowell, D. Orton, T. Taverner, C. Ansong, Y. Ibrahim, M. Burnett ...

Contributors: E. Merkley, E. Baker, K. Crowell, D. Orton, T. Taverner, C. Ansong, Y. Ibrahim, M. Burnett ...

Source: ORCID
Added: December 5, 2019

2013 journal article

Increasing confidence of LC-MS identifications by utilizing ion mobility spectrometry

International Journal of Mass Spectrometry, 354, 312–317.

By: K. Crowell*, E. Baker*, S. Payne*, Y. Ibrahim*, M. Monroe*, G. Slysz*, B. LaMarche*, V. Petyuk* ...

co-author countries: United States of America 🇺🇸

Contributors: K. Crowell*, E. Baker*, S. Payne*, Y. Ibrahim*, M. Monroe*, G. Slysz*, B. LaMarche*, V. Petyuk* ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Peptide identification; LC-MS; LC-IMS-MS; AMT tag; False discovery rate; Drift time
Source: ORCID
Added: December 5, 2019

2013 journal article

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets

Bioinformatics, 29(21), 2804–2805.

By: K. Crowell, G. Slysz, E. Baker*, B. LaMarche, M. Monroe, Y. Ibrahim, S. Payne, G. Anderson, R. Smith

Contributors: K. Crowell, G. Slysz, E. Baker*, B. LaMarche, M. Monroe, Y. Ibrahim, S. Payne, G. Anderson, R. Smith

MeSH headings : Algorithms; Chromatography, Liquid / methods; Cluster Analysis; Ions; Mass Spectrometry / methods; Software; Spectrum Analysis / methods
Source: ORCID
Added: December 5, 2019

2013 journal article

Mixed-Isotope Labeling with LC-IMS-MS for Characterization of Protein-Protein Interactions by Chemical Cross-Linking

Journal of the American Society For Mass Spectrometry, 24(3), 444–449.

By: E. Merkley*, E. Baker*, K. Crowell*, D. Orton*, T. Taverner, C. Ansong*, Y. Ibrahim*, M. Burnet* ...

co-author countries: United States of America 🇺🇸

Contributors: E. Merkley*, E. Baker*, K. Crowell*, D. Orton*, T. Taverner, C. Ansong*, Y. Ibrahim*, M. Burnet* ...

author keywords: Cross-linking; Proteins; Cross-linked peptides; Ionmobility spectrometry; Mass Spectrometry; Liquid chromatography; Drift time; Protein structure; Heavy isotope labeling
MeSH headings : Amino Acid Sequence; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Chromatography, Liquid / methods; Cross-Linking Reagents / chemistry; Isotope Labeling / methods; Models, Molecular; Molecular Sequence Data; Peptides / analysis; Peptides / metabolism; Protein Conformation; Protein Interaction Mapping / methods; Proteins / chemistry; Proteins / metabolism; Recombinant Proteins / chemistry; Recombinant Proteins / metabolism; Sequence Analysis, Protein / methods; Shewanella / chemistry; Shewanella / metabolism; Tandem Mass Spectrometry / methods
Source: ORCID
Added: December 5, 2019

2013 journal article

Redox states of Desulfovibrio vulgaris DsrC, a key protein in dissimilatory sulfite reduction

Biochemical and Biophysical Research Communications, 441(4), 732–736.

co-author countries: Germany 🇩🇪 Portugal 🇵🇹 United States of America 🇺🇸
author keywords: Dissimilatory sulfite reductase; Desulfovibrio; DsrC; MalPEG; Gel-shift assay
MeSH headings : Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Desulfovibrio vulgaris / enzymology; Oxidation-Reduction; Sulfite Reductase (NADPH) / chemistry; Sulfite Reductase (NADPH) / metabolism; Sulfites / metabolism
Source: ORCID
Added: December 5, 2019

2012 journal article

Evaluation of SDS Depletion Using an Affinity Spin Column and IMS-MS Detection

Proteomics, 12(21), 3138–3142.

By: S. Hengel*, E. Floyd*, E. Baker*, R. Zhao*, S. Wu* & L. Pasa-Tolic*

co-author countries: United States of America 🇺🇸

Contributors: S. Hengel*, E. Floyd*, E. Baker*, R. Zhao*, S. Wu* & L. Pasa-Tolic*

author keywords: Detergents; Ion mobility; Sample preparation; SDS depletion; Technology
MeSH headings : Bacterial Proteins / chemistry; Models, Chemical; Peptide Fragments / analysis; Peptide Fragments / chemistry; Peptide Fragments / isolation & purification; Proteomics / methods; Shewanella / chemistry; Sodium Dodecyl Sulfate / analysis; Sodium Dodecyl Sulfate / chemistry; Sodium Dodecyl Sulfate / isolation & purification; Tandem Mass Spectrometry / methods; Ubiquitin / chemistry
Sources: ORCID, Web Of Science
Added: December 5, 2019

2012 journal article

Mass spectrometry for translational proteomics: progress and clinical implications

Genome Medicine, 4(8).

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, T. Liu*, V. Petyuk*, K. Burnum-Johnson*, Y. Ibrahim*, G. Anderson*, R. Smith*

author keywords: biomarker; clinical proteomics; ion mobility separations; mass spectrometry; multiple reaction monitoring; selected reaction monitoring; shotgun proteomics; targeted proteomics; translational proteomics
Source: ORCID
Added: December 5, 2019

2012 journal article

Mass spectrometry-based proteomics: existing capabilities and future directions

Chemical Society Reviews, 41(10), 3912–3928.

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Chromatography, Liquid / methods; Humans; Mass Spectrometry / methods; Protein Processing, Post-Translational; Proteome / analysis; Proteome / metabolism; Proteomics / methods
Source: ORCID
Added: December 5, 2019

2012 journal article

Uterine Deletion of Trp53 Compromises Antioxidant Responses in the Mouse Decidua

Endocrinology, 153(9), 4568–4579.

co-author countries: United States of America 🇺🇸

Contributors: K. Burnum*, Y. Hirota*, E. Baker*, M. Yoshie*, Y. Ibrahim*, M. Monroe*, G. Anderson*, R. Smith*, T. Daikoku*, S. Dey*

MeSH headings : Animals; Antioxidants / metabolism; Decidua / metabolism; Female; Mice; Oxidative Stress / genetics; Premature Birth / genetics; Premature Birth / metabolism; Tumor Suppressor Protein p53 / deficiency; Tumor Suppressor Protein p53 / genetics; Uterus / metabolism
Source: ORCID
Added: December 5, 2019

2011 chapter

New Developments in LC-MS and Other Hyphenated Techniques

In Sample Preparation in Biological Mass Spectrometry (pp. 981–1030).

By: M. Belov*, R. Kurulugama*, D. Lopez-Ferrer*, Y. Ibrahim* & E. Baker*

co-author countries: United States of America 🇺🇸
author keywords: Reversed-phase HPLC; Strong cation exchange; Capillary zone electrophoresis; Ion mobility spectrometry; High-field asymmetric waveform ion mobility spectrometry
Sources: Crossref, ORCID
Added: December 16, 2019

2010 journal article

A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins

Molecular Biosystems, 6(12), 2448–2458.

By: G. Buchko*, G. Niemann*, E. Baker*, M. Belov*, R. Smith*, F. Heffron*, J. Adkins*, J. McDermott*

co-author countries: United States of America 🇺🇸

Contributors: G. Buchko*, G. Niemann*, E. Baker*, M. Belov*, R. Smith*, F. Heffron*, J. Adkins*, J. McDermott*

MeSH headings : Adenylate Cyclase Toxin / metabolism; Algorithms; Amino Acid Motifs; Amino Acid Sequence; Amino Acids / metabolism; Bacterial Proteins / chemistry; Bacterial Proteins / metabolism; Biological Assay; Circular Dichroism; Computational Biology / methods; Cyclic AMP / metabolism; Magnetic Resonance Spectroscopy; Mass Spectrometry; Molecular Sequence Data; Peptides / chemistry; Propanols / chemistry; Protein Sorting Signals; Protein Structure, Secondary; Salmonella enterica / metabolism; Trifluoroethanol / chemistry
Source: ORCID
Added: December 5, 2019

2010 journal article

An LC-IMS-MS Platform Providing Increased Dynamic Range for High-Throughput Proteomic Studies

Journal of Proteome Research, 9(2), 997–1006.

By: E. Baker*, E. Livesay*, D. Orton*, R. Moore*, W. Danielson*, D. Prior*, Y. Ibrahim*, B. LaMarche* ...

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, E. Livesay*, D. Orton*, R. Moore*, W. Danielson*, D. Prior*, Y. Ibrahim*, B. LaMarche* ...

author keywords: Ion mobility spectrometry; IMS-MS; LC-IMS-MS; high-throughput RPLC
MeSH headings : Animals; Blood Proteins / chemistry; Chromatography, Liquid / methods; Fourier Analysis; Mice; Peptide Mapping; Proteomics; Tandem Mass Spectrometry / methods
Source: ORCID
Added: December 5, 2019

2010 journal article

Characterization of an ion mobility-multiplexed collision-induced dissociation-tandem time-of-flight mass spectrometry approach

International Journal of Mass Spectrometry, 293(1-3), 34–44.

By: Y. Ibrahim*, D. Prior*, E. Baker*, R. Smith* & M. Belov*

co-author countries: United States of America 🇺🇸

Contributors: Y. Ibrahim*, D. Prior*, E. Baker*, R. Smith* & M. Belov*

author keywords: Ion mobility spectrometry; Multiplexed CID; Time-of-flight; Peptide identification; False discovery rate
Source: ORCID
Added: December 5, 2019

2010 journal article

Ion mobility separations in high throughput proteomics: A novel approach to protein detection and quantitation

Abstracts of Papers of the American Chemical Society, 240. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000208164705803&KeyUID=WOS:000208164705803

By: M. Belov, E. Baker, Y. Ibrahim, D. Prior, W. Danielson, R. Kurulugama, S. Prasad, A. Shah ...

Contributors: M. Belov, E. Baker, Y. Ibrahim, D. Prior, W. Danielson, R. Kurulugama, S. Prasad, A. Shah ...

Source: ORCID
Added: December 5, 2019

2010 journal article

Machine learning based prediction for peptide drift times in ion mobility spectrometry

Bioinformatics, 26(13), 1601–1607.

By: A. Shah*, K. Agarwal*, E. Baker*, M. Singhal*, A. Mayampurath*, Y. Ibrahim*, L. Kangas*, M. Monroe* ...

co-author countries: United States of America 🇺🇸

Contributors: A. Shah*, K. Agarwal*, E. Baker*, M. Singhal*, A. Mayampurath*, Y. Ibrahim*, L. Kangas*, M. Monroe* ...

MeSH headings : Artificial Intelligence; Computational Biology / methods; Ions; Mass Spectrometry; Peptides / analysis; Proteomics / methods; Software; Spectrum Analysis
Source: ORCID
Added: December 5, 2019

2009 journal article

Aminoglycoside antibiotics: A-site specific binding to 16S

International Journal of Mass Spectrometry, 283(1-3), 105–111.

By: E. Baker*, N. Dupuis* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, N. Dupuis* & M. Bowers*

author keywords: Ion mobility; 16S; Mass spectrometry
Source: ORCID
Added: December 5, 2019

2009 journal article

Biases in Ion Transmission Through an Electrospray Ionization-Mass Spectrometry Capillary Inlet

Journal of the American Society For Mass Spectrometry, 20(12), 2265–2272.

By: J. Page*, I. Marginean*, E. Baker*, R. Kelly*, K. Tang* & R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: J. Page*, I. Marginean*, E. Baker*, R. Kelly*, K. Tang* & R. Smith*

MeSH headings : Artifacts; Electrophoresis, Capillary / instrumentation; Electrophoresis, Capillary / methods; Equipment Design; Equipment Failure Analysis; Reproducibility of Results; Sensitivity and Specificity; Spectrometry, Mass, Electrospray Ionization / instrumentation; Spectrometry, Mass, Electrospray Ionization / methods
Source: ORCID
Added: December 5, 2019

2009 journal article

DNA Hairpin, Pseudoknot, and Cruciform Stability in a Solvent-Free Environment

Journal of Physical Chemistry B, 113(6), 1722–1727.

By: E. Baker*, N. Dupuis* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, N. Dupuis* & M. Bowers*

MeSH headings : Computer Simulation; DNA / chemistry; Models, Chemical; Nucleic Acid Conformation; Solvents; Spectrometry, Mass, Electrospray Ionization
Source: ORCID
Added: December 5, 2019

2008 journal article

G-quadruplex DNA assemblies: Loop length, cation identity, and multimer formation

Journal of the American Chemical Society, 130(31), 10208–10216.

By: N. Smargiasso*, F. Rosu*, W. Hsia*, P. Colson*, E. Baker*, M. Bowers*, E. De Pauw*, V. Gabelica*

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸

Contributors: N. Smargiasso*, F. Rosu*, W. Hsia*, P. Colson*, E. Baker*, M. Bowers*, E. De Pauw*, V. Gabelica*

MeSH headings : Base Sequence; Cations; Dimerization; G-Quadruplexes; Nucleic Acid Conformation; Oligodeoxyribonucleotides / chemistry
Source: ORCID
Added: December 5, 2019

2008 journal article

High-resolution separations and improved ion production and transmission in metabolomics

Trac-Trends in Analytical Chemistry, 27(3), 205–214.

By: T. Metz*, J. Page*, E. Baker*, K. Tang*, J. Ding*, Y. Shen*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: T. Metz*, J. Page*, E. Baker*, K. Tang*, J. Ding*, Y. Shen*, R. Smith*

author keywords: electrospray ionization; ion mobility spectroscopy; liquid chromatography; mass spectrometry; metabolomics
Source: ORCID
Added: December 5, 2019

2008 journal article

Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies

Journal of the American Society For Mass Spectrometry, 19(3), 411–419.

By: E. Baker*, K. Tang*, W. Danielson*, D. Prior* & R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, K. Tang*, W. Danielson*, D. Prior* & R. Smith*

MeSH headings : Angiotensin I / chemistry; Bradykinin / chemistry; Electricity; Fibrinopeptide A / chemistry; Ions / chemistry; Neurotensin / chemistry; Peptides / chemistry; Serum Albumin, Bovine / chemistry; Spectrometry, Mass, Electrospray Ionization / instrumentation; Spectrometry, Mass, Electrospray Ionization / methods; Spectrum Analysis / methods; Trypsin / chemistry
Source: ORCID
Added: December 5, 2019

2007 journal article

B-DNA helix stability in a solvent-free environment

Journal of the American Society For Mass Spectrometry, 18(7), 1188–1195.

By: E. Baker* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker* & M. Bowers*

MeSH headings : Computer Simulation; DNA / chemistry; DNA / ultrastructure; Drug Stability; Models, Chemical; Models, Molecular; Nucleic Acid Conformation; Nucleic Acid Denaturation; Solvents / chemistry; Spectrometry, Mass, Electrospray Ionization / methods
Source: ORCID
Added: December 5, 2019

2007 journal article

Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures

Journal of the American Society For Mass Spectrometry, 18(7), 1176–1187.

By: E. Baker*, B. Clowers*, F. Li*, K. Tang*, A. Tolmachev*, D. Prior*, M. Belov*, R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, B. Clowers*, F. Li*, K. Tang*, A. Tolmachev*, D. Prior*, M. Belov*, R. Smith*

MeSH headings : Biopolymers / analysis; Biopolymers / chemistry; Equipment Design; Equipment Failure Analysis; Gases / analysis; Gases / chemistry; Ions; Pressure; Reproducibility of Results; Sensitivity and Specificity; Spectrometry, Mass, Electrospray Ionization / instrumentation; Spectrometry, Mass, Electrospray Ionization / methods
Source: ORCID
Added: December 5, 2019

2007 journal article

Optimization of algorithms for ion mobility calculations

Journal of Physical Chemistry a, 111(10), 2002–2010.

By: A. Shvartsburg*, S. Mashkevich*, E. Baker* & R. Smith*

co-author countries: United States of America 🇺🇸

Contributors: A. Shvartsburg*, S. Mashkevich*, E. Baker* & R. Smith*

MeSH headings : Algorithms; Ions / chemistry; Models, Chemical
Source: ORCID
Added: December 5, 2019

2007 journal article

Stabilization and structure of telomeric and c-myc region intramolecular G-quadruplexes: The role of central cations and small planar ligands

Journal of the American Chemical Society, 129(4), 895–904.

By: V. Gabelica*, E. Baker*, M. Teulade-Fichou*, E. De Pauw* & M. Bowers*

co-author countries: Belgium 🇧🇪 France 🇫🇷

Contributors: V. Gabelica*, E. Baker*, M. Teulade-Fichou*, E. De Pauw* & M. Bowers*

MeSH headings : Base Sequence; Cations / chemistry; DNA / chemistry; G-Quadruplexes; Genes, myc; Guanidine / chemistry; Ligands; Models, Molecular; Nucleic Acid Conformation; Quaternary Ammonium Compounds / chemistry; Solvents / chemistry; Spectrometry, Mass, Electrospray Ionization; Telomere / chemistry
Source: ORCID
Added: December 5, 2019

2006 journal article

ANYL 227-Exploring the conformational diversity of proteins and peptides using high-resolution FAIMS and IMS

Abstracts of Papers of the American Chemical Society, 232. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207781601223&KeyUID=WOS:000207781601223

By: K. Tang, A. Shvartsburg, F. Li, Y. Ibrahim, D. Prior, M. Buschbach, E. Baker, R. Smith

Contributors: K. Tang, A. Shvartsburg, F. Li, Y. Ibrahim, D. Prior, M. Buschbach, E. Baker, R. Smith

Source: ORCID
Added: December 5, 2019

2006 journal article

Cyclo[n]pyrroles: Size and site-specific binding to G-quadruplexes

Journal of the American Chemical Society, 128(8), 2641–2648.

By: E. Baker*, J. Lee*, J. Sessler* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, J. Lee*, J. Sessler* & M. Bowers*

MeSH headings : Binding Sites; DNA / chemistry; DNA / metabolism; Enzyme Inhibitors / chemistry; Enzyme Inhibitors / pharmacology; G-Quadruplexes; Guanine / chemistry; Guanine / metabolism; Models, Molecular; Nucleic Acid Conformation; Porphyrins / chemistry; Pyrroles / chemistry; Pyrroles / pharmacology; Spectrometry, Mass, Electrospray Ionization; Substrate Specificity; Telomerase / antagonists & inhibitors; Thermodynamics
Source: ORCID
Added: December 5, 2019

2006 journal article

G-quadruplexes in telomeric repeats are conserved in a solvent-free environment

International Journal of Mass Spectrometry, 253(3), 225–237.

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸
author keywords: ion mobility; G-quadruplexes; DNA
Source: ORCID
Added: December 5, 2019

2006 journal article

Non-covalent complexes of biological interest: Nucleotide-drug interactions and peptide/protein self assembly

Abstracts of Papers of the American Chemical Society, 231. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000238125900429&KeyUID=WOS:000238125900429

By: M. Bowers, S. Bernstein, E. Baker, T. Wyttenbach, J. Shea & D. Teplow

Contributors: M. Bowers, S. Bernstein, E. Baker, T. Wyttenbach, J. Shea & D. Teplow

Source: ORCID
Added: December 5, 2019

2006 journal article

PNA/dsDNA complexes: Site specific binding and dsDNA biosensor applications

Journal of the American Chemical Society, 128(26), 8484–8492.

By: E. Baker*, J. Hong*, B. Gaylord*, G. Bazan* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, J. Hong*, B. Gaylord*, G. Bazan* & M. Bowers*

MeSH headings : Biosensing Techniques / methods; DNA / chemistry; DNA Probes / chemistry; Electrophoresis, Polyacrylamide Gel; Fluorescence Resonance Energy Transfer; Mass Spectrometry / methods; Molecular Structure; Peptide Nucleic Acids / chemistry; Sensitivity and Specificity
Source: ORCID
Added: December 5, 2019

2005 journal article

Probing shapes of bichromophoric metal-organic complexes using ion mobility mass spectrometry

Journal of the American Chemical Society, 127(51), 18222–18228.

By: E. Baker*, J. Bushnell*, S. Wecksler*, M. Lim*, M. Manard*, N. Dupuis*, P. Ford*, M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, J. Bushnell*, . Wecksler*, M. Lim*, M. Manard*, N. Dupuis*, P. Ford*, M. Bowers*

Source: ORCID
Added: December 5, 2019

2005 journal article

Structural analysis of metal interactions with the dinucleotide duplex, dCG center dot dCG, using ion mobility mass spectrometry

Journal of Physical Chemistry B, 109(11), 4808–4810.

By: E. Baker*, M. Manard*, J. Gidden* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, M. Manard*, J. Gidden* & M. Bowers*

MeSH headings : Mass Spectrometry / methods; Metals / chemistry; Nucleotides / chemistry
Source: ORCID
Added: December 5, 2019

2005 journal article

Structural characterization of G-quadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry

Journal of the American Society For Mass Spectrometry, 16(7), 989–997.

By: E. Baker*, S. Bernstein* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, S. Bernstein* & M. Bowers*

MeSH headings : Deoxyguanosine / chemistry; Molecular Structure; Nanotechnology; Spectrometry, Mass, Electrospray Ionization / methods
Source: ORCID
Added: December 5, 2019

2005 journal article

Structural motifs of DNA complexes in the gas phase

International Journal of Mass Spectrometry, 240(3), 183–193.

By: J. Gidden*, E. Baker*, A. Ferzoco* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: J. Gidden*, E. Baker*, A. Ferzoco* & M. Bowers*

author keywords: ion mobility; DNA; helix; conformations
Source: ORCID
Added: December 5, 2019

2005 journal article

Structure of hybrid polyhedral oligomeric silsesquioxane propyl methacrylate oligomers using ion mobility mass spectrometry and molecular mechanics

Chemistry of Materials, 17(10), 2537–2545.

By: S. Anderson*, E. Baker*, C. Mitchell*, T. Haddad* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: S. Anderson*, E. Baker*, C. Mitchell*, T. Haddad* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 journal article

Diastereomer assignment of an olefin-linked bis-paracyclophane by ion mobility mass spectrometry

Journal of the American Chemical Society, 126(20), 6255–6257.

By: E. Baker*, J. Hong*, J. Gidden*, G. Bartholomew*, G. Bazan* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, J. Hong*, J. Gidden*, G. Bartholomew*, G. Bazan* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 journal article

Duplex formation and the onset of helicity in oligonucleotides.

Abstracts of Papers of the American Chemical Society, 227, U258. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000223655701333&KeyUID=WOS:000223655701333

By: J. Gidden, E. Baker, A. Ferzoco & M. Bowers

Contributors: J. Gidden, E. Baker, A. Ferzoco & M. Bowers

Source: ORCID
Added: December 5, 2019

2004 journal article

Duplex formation and the onset of helicity in poly d(CG)(n) oligonucleotides in a solvent-free environment

Journal of the American Chemical Society, 126(46), 15132–15140.

By: J. Gidden*, A. Ferzoco*, E. Baker* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: J. Gidden*, A. Ferzoco*, E. Baker* & M. Bowers*

MeSH headings : Circular Dichroism; Cytosine / analogs & derivatives; Cytosine / chemistry; DNA / chemistry; Guanine / analogs & derivatives; Guanine / chemistry; Models, Molecular; Nucleic Acid Conformation; Oligonucleotides / chemical synthesis; Oligonucleotides / chemistry; Poly C / chemical synthesis; Poly C / chemistry; Poly G / chemical synthesis; Poly G / chemistry; Spectrometry, Mass, Electrospray Ionization; Structure-Activity Relationship
Source: ORCID
Added: December 5, 2019

2004 journal article

Isomeric structural characterization of polyhedral oligomeric silsesquioxanes (POSS) with styryl and epoxy phenyl capping agents

Nano Letters, 4(5), 779–785.

By: E. Baker*, J. Gidden*, S. Anderson*, T. Haddad* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, J. Gidden*, S. Anderson*, T. Haddad* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 journal article

Microstructural and Conformational Studies of Polyether Copolymers

The International Journal of Mass Spectrometry, 238(3), 287–297.

By: A. Jackson*, J. Scrivens*, J. Williams*, E. Baker*, J. Gidden* & M. Bowers*

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸

Contributors: A. Jackson*, J. Scrivens*, J. Williams*, E. Baker*, J. Gidden* & M. Bowers*

author keywords: oligomer; ion mobility; ESI-MS/MS
Sources: ORCID, Web Of Science
Added: December 5, 2019

2004 journal article

Sequence Dependent Conformations of Glycidyl Methacrylate/Butyl Methacrylate Copolymers in the Gas Phase

The International Journal of Mass Spectrometry, 238(3), 279–286.

By: E. Baker*, J. Gidden, W. Simonsick, M. Grady & M. Bowers

Contributors: E. Baker*, J. Gidden, W. Simonsick, M. Grady & M. Bowers

author keywords: glycidyl methacrylate/butyl methacrylate; gas phase; MALDI; ion mobility
Sources: ORCID, Web Of Science
Added: December 5, 2019

2004 journal article

Sodium stabilization of dinucleotide multiplexes in the gas phase

Physical Chemistry Chemical Physics, 6(10), 2786–2795.

By: E. Baker*, J. Gidden*, A. Ferzoco* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, J. Gidden*, A. Ferzoco* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 chapter

The ion mobility mass spectrometry method and its application to duplex formation of oligonucleotides and aggregation of proteins

In Advances in Mass Spectrometry, Vol 16 (Vol. 16, pp. 189–200). http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000226631200011&KeyUID=WOS:000226631200011

By: T. Wyttenbach, E. Baker, S. Bernstein, A. Ferzoco, J. Gidden, D. Liu, M. Bowers

Contributors: T. Wyttenbach, E. Baker, S. Bernstein, A. Ferzoco, J. Gidden, D. Liu, M. Bowers

Source: ORCID
Added: December 5, 2019

2003 journal article

3-dimensional structural characterization of cationized polyhedral oligomeric silsesquioxanes (POSS) with styryl and phenylethyl capping agents

International Journal of Mass Spectrometry, 227(1), 205–216.

By: E. Baker*, J. Gidden*, D. Fee*, P. Kemper*, S. Anderson* & M. Bowers*

co-author countries: United States of America 🇺🇸

Contributors: E. Baker*, J. Gidden*, D. Fee*, P. Kemper*, S. Anderson* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2003 journal article

Application of ion mobility to the gas-phase conformational analysis of polyhedral oligomeric silsesquioxanes (POSS)

International Journal of Mass Spectrometry, 222(1-3), 63–73.

Contributors: J. Gidden*, P. Kemper*, E. Shammel*, D. Fee*, S. Anderson* & M. Bowers*

author keywords: POSS; ion mobility; gas-phase conformational analysis
Source: ORCID
Added: December 5, 2019

Employment

Updated: October 21st, 2022 14:56

2022 - present

University of North Carolina at Chapel Hill Chapel Hill, NC, US
Associate Professor Chemistry

2018 - 2022

NC State University Raleigh, North Carolina, US
Associate Professor Chemistry

2006 - 2018

Pacific Northwest National Laboratory Richland, WA, US
Senior Research Scientist Biological Sciences Division

Education

Updated: July 18th, 2016 12:17

2001 - 2005

University of California Santa Barbara Santa Barbara, CA, US
Ph.D. in Chemistry Chemistry

1997 - 2001

Montana State University Bozeman Bozeman, MT, US
B.S. in Chemistry and minor in Mathematics Chemistry

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2024) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.