Erin Marie Baker
ion mobility spectrometry
Works (182)
2025 article
Conditional knockout of C/EBPβ in epidermis results in dysregulated lipid biosynthesis and a defect in skin barrier function
Mills, K. J., Doyle, M., House, J. S., Witherspoon, J. G., Krakko, D., Stutts, W. L., … Smart, R. C. (2025, June 25). (S. H. A. Raza, Ed.). PLoS ONE, Vol. 20.
Ed(s): S. Raza
open access via doi.org (publisher)2025 article
Detection and Quantitation of Per- and Polyfluoroalkyl Substances in North Carolina Sea Foam and the Corresponding Sea Water
Enders, J. R., Weed, R. A., Donovan, E., Phelps, D., Campbell, G., May, K., & Baker, E. S. (2025, August 27). Environmental Science & Technology, Vol. 8.
2024 article
Evaluating Solid Phase Adsorption Toxin Tracking (SPATT) for passive monitoring of per- and polyfluoroalkyl substances (PFAS) with Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)
Dodds, J. N., Kirkwood-Donelson, K. I., Boatman, A. K., Knappe, D. R. U., Hall, N. S., Schnetzer, A., & Baker, E. S. (2024, July 7). The Science of The Total Environment, Vol. 947.
2024 article
Metagenomic, metabolomic, and lipidomic shifts associated with fecal microbiota transplantation for recurrent Clostridioides difficile infection
McMillan, A. S., Zhang, G., Dougherty, M. K., McGill, S. K., Gulati, A. S., Baker, E. S., & Theriot, C. M. (2024, October 8). MSphere.
2024 article
Non-Targeted PFAS Suspect Screening and Quantification of Drinking Water Samples Collected through Community Engaged Research in North Carolina’s Cape Fear River Basin
Weed, R. A., Campbell, G., Brown, L., May, K., Sargent, D., Sutton, E., … Enders, J. R. (2024, May 31). Toxics, Vol. 12.
2024 article
Proteomic and Lipidomic Plasma Evaluations Reveal Biomarkers for Domoic Acid Toxicosis in California Sea Lions
Solosky, A. M., Claudio, I. M., Chappel, J. R., Kirkwood-Donelson, K. I., Janech, M. G., Bland, A. M., … Baker, E. S. (2024, November 25). Journal of Proteome Research.
2024 article
Streamlining Phenotype Classification and Highlighting Feature Candidates: A Screening Method for Non-Targeted Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS) Data
Chappel, J. R., Kirkwood-Donelson, K. I., Dodds, J. N., Fleming, J., Reif, D. M., & Baker, E. S. (2024, September 18). Analytical Chemistry, Vol. 9.
2023 article
Aggregated Molecular Phenotype Scores: Enhancing Assessment and Visualization of Mass Spectrometry Imaging Data for Tissue-Based Diagnostics
Chappel, J. R., King, M. E., Fleming, J., Eberlin, L. S., Reif, D. M., & Baker, E. S. (2023, August 14). Analytical Chemistry, Vol. 8.
2023 article
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut
Foley, M. H., Walker, M. E., Stewart, A. K., Sarah, O. F., Gentry, E. C., Patel, S., … Theriot, C. M. (2023, March 13). Nature Microbiology, Vol. 3.
2023 article
Characterizing Adeno-Associated Virus Capsids with Both Denaturing and Intact Analysis Methods
Ryan, J. P., Kostelic, M. M., Hsieh, C.-C., Powers, J., Aspinwall, C., Dodds, J. N., … Baker, E. S. (2023, November 27). Journal of the American Society for Mass Spectrometry.
2023 article
Integrative Chemical–Biological Grouping of Complex High Production Volume Substances from Lower Olefin Manufacturing Streams
Cordova, A. C., Klaren, W. D., Ford, L. C., Grimm, F. A., Baker, E. S., Zhou, Y.-H., … Rusyn, I. (2023, July 5). Toxics, Vol. 11.
2023 article
Reverse metabolomics for the discovery of chemical structures from humans
Gentry, E. C., Collins, S. L., Panitchpakdi, M., Belda-Ferre, P., Stewart, A. K., Terrazas, M. C., … Dorrestein, P. C. (2023, December 5). Nature.
2023 article
Uncovering per- and polyfluoroalkyl substances (PFAS) with nontargeted ion mobility spectrometry–mass spectrometry analyses
Kirkwood-Donelson, K. I., Dodds, J. N., Schnetzer, A., Hall, N., & Baker, E. S. (2023, October 25). Science Advances, Vol. 9.
2023 article
Using Multidimensional Separations to Distinguish Isomeric Amino Acid–Bile Acid Conjugates and Assess Their Presence and Perturbations in Model Systems
Stewart, A. K., Foley, M. H., Dougherty, M. K., McGill, S. K., Gulati, A. S., Gentry, E. C., … Baker, E. S. (2023, October 5). Analytical Chemistry.
2022 article
A High-Throughput Ion Mobility Spectrometry–Mass Spectrometry Screening Method for Opioid Profiling
Butler, K. E., & Baker, E. S. (2022, September 22). Journal of the American Society for Mass Spectrometry, Vol. 9.
2022 article
Assessing the Fate of Dissolved Organic Compounds in Landfill Leachate and Wastewater Treatment Systems
Doyle, M. G., Odenkirk, M. T., Stewart, A. K., Nelson, J. P., Baker, E. S., & Cruz, F. D. L. (2022, November 1). ACS ES&T Water, Vol. 11.
2022 article
CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics
Rainey, M. A., Watson, C. A., Asef, C. K., Foster, M. R., Baker, E. S., & Fernández, F. M. (2022, December 6). Analytical Chemistry, Vol. 12.
2022 article
Characterization of compositional variability in petroleum substances
Roman-Hubers, A. T., Cordova, A. C., Rohde, A. M., Chiu, W. A., McDonald, T. J., Wright, F. A., … Rusyn, I. (2022, February 12). Fuel, Vol. 6.
2022 article
Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, and Validate Metabolites in Untargeted Analyses
Dodds, J. N., Wang, L., Patti, G. J., & Baker, E. S. (2022, January 28). Analytical Chemistry, Vol. 1.
2022 article
Cupric Ions Selectively Modulate TRAAK–Phosphatidylserine Interactions
Zhu, Y., Schrecke, S., Tang, S., Odenkirk, M. T., Walker, T., Stover, L., … Laganowsky, A. (2022, April 14). Journal of the American Chemical Society, Vol. 4.
2022 article
Empowering women and addressing underrepresentation in the field of mass spectrometry
Rampler, E., Baker, E. S., Kirkwood, K. I., Schwaiger-Haber, M., Tam, M., Jones, M. A., & Sherman, M. (2022, January 2). Expert Review of Proteomics, Vol. 2.
2022 article
Evaluation of Metabolism of a Defined Pesticide Mixture through Multiple In Vitro Liver Models
Valdiviezo, A., Kato, Y., Baker, E. S., Chiu, W. A., & Rusyn, I. (2022, September 27). Toxics, Vol. 10.
2022 article
High-Resolution Demultiplexing (HRdm) Ion Mobility Spectrometry–Mass Spectrometry for Aspartic and Isoaspartic Acid Determination and Screening
Butler, K. E., Dodds, J. N., Flick, T., Campuzano, I. D. G., & Baker, E. S. (2022, April 14). Analytical Chemistry, Vol. 4.
2022 journal article
Impacts of Gestational FireMaster 550 Exposure on the Neonatal Cortex Are Sex Specific and Largely Attributable to the Organophosphate Esters
Neuroendocrinology, 113(12), 1262–1282.
2022 article
Introducing the Lipidomics Minimal Reporting Checklist
McDonald, J. G., Ejsing, C. S., Kopczynski, D., Holčapek, M., Aoki, J., Arita, M., … Ekroos, K. (2022, August 8). Nature Metabolism, Vol. 8.
2022 article
Stability and Dissociation of Adeno-Associated Viral Capsids by Variable Temperature-Charge Detection-Mass Spectrometry
Kostelic, M. M., Ryan, J. P., Brown, L. S., Jackson, T. W., Hsieh, C.-C., Zak, C. K., … Marty, M. T. (2022, August 18). Analytical Chemistry, Vol. 8.
2022 article
Surface Modified Nano-Electrospray Needles Improve Sensitivity for Native Mass Spectrometry
Kostelic, M. M., Hsieh, C.-C., Sanders, H. M., Zak, C. K., Ryan, J. P., Baker, E. S., … Marty, M. T. (2022, May 19). Journal of the American Society for Mass Spectrometry, Vol. 6.
2022 article
Temporal chemical composition changes in water below a crude oil slick irradiated with natural sunlight
Roman-Hubers, A. T., Aeppli, C., Dodds, J. N., Baker, E. S., McFarlin, K. M., Letinski, D. J., … Rusyn, I. (2022, November 19). Marine Pollution Bulletin, Vol. 185.
2022 article
Uncovering PFAS and Other Xenobiotics in the Dark Metabolome Using Ion Mobility Spectrometry, Mass Defect Analysis, and Machine Learning
Foster, M. K., Rainey, M., Watson, C., Dodds, J. N., Kirkwood, K. I., Fernández, F. M., & Baker, E. S. (2022, June 2). Environmental Science & Technology, Vol. 6.
2022 article
Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS)
Kirkwood, K. I., Fleming, J., Nguyen, H., Reif, D. M., Baker, E. S., & Belcher, S. M. (2022, February 17). Environmental Science & Technology, Vol. 2.
2022 article
Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions
Kirkwood, K. I., Pratt, B. S., Shulman, N., Tamura, K., MacCoss, M. J., MacLean, B. X., & Baker, E. S. (2022, July 13). Nature Protocols, Vol. 7.
2021 article
A Preprocessing Tool for Enhanced Ion Mobility–Mass Spectrometry-Based Omics Workflows
Bilbao, A., Gibbons, B. C., Stow, S. M., Kyle, J. E., Bloodsworth, K. J., Payne, S. H., … Fjeldsted, J. C. (2021, August 12). Journal of Proteome Research, Vol. 3.
2021 article
Analysis of per- and polyfluoroalkyl substances in Houston Ship Channel and Galveston Bay following a large-scale industrial fire using ion-mobility-spectrometry-mass spectrometry
Valdiviezo, A., Aly, N. A., Luo, Y.-S., Cordova, A., Casillas, G., Foster, M. K., … Rusyn, I. (2021, August 21). Journal of Environmental Sciences, Vol. 5.
2021 article
Data Processing Workflow to Identify Structurally Related Compounds in Petroleum Substances Using Ion Mobility Spectrometry–Mass Spectrometry
Roman-Hubers, A. T., Cordova, A. C., Aly, N. A., McDonald, T. J., Lloyd, D. T., Wright, F. A., … Rusyn, I. (2021, June 16). Energy & Fuels, Vol. 7.
2021 article
Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity
Kirkwood, K. I., Christopher, M. W., Burgess, J. L., Littau, S. R., Foster, K., Richey, K., … Baker, E. S. (2021, December 7). Journal of Proteome Research, Vol. 12.
2021 article
From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem
Khadempour, L., Kyle, J. E., Webb-Robertson, B.-J. M., Nicora, C. D., Smith, F. B., Smith, R. D., … Burnum-Johnson, K. E. (2021, March 23). MSystems, Vol. 4.
2021 article
Improving the Speed and Selectivity of Newborn Screening Using Ion Mobility Spectrometry–Mass Spectrometry
Dodds, J. N., & Baker, E. S. (2021, December 1). Analytical Chemistry, Vol. 12.
2021 article
In situ imaging reveals disparity between prostaglandin localization and abundance of prostaglandin synthases
Duncan, K. D., Sun, X., Baker, E. S., Dey, S. K., & Lanekoff, I. (2021, August 13). Communications Biology, Vol. 8.
2021 article
Ion Mobility Spectrometry Characterization of the Intermediate Hydrogen-Containing Gold Cluster Au7(PPh3)7H52+
Ligare, M. R., Morrison, K. A., Hewitt, M. A., Reveles, J. U., Govind, N., Hernandez, H., … Johnson, G. E. (2021, March 5). The Journal of Physical Chemistry Letters, Vol. 12, pp. 2502–2508.
2021 article
Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments
Odenkirk, M. T., Reif, D. M., & Baker, E. S. (2021, May 24). Analytical Chemistry, Vol. 6.
2021 journal article
Per- and polyfluoroalkyl substances (PFAS)—contaminants of emerging concern
Analytical and Bioanalytical Chemistry, 414(3), 1187–1188.
2021 article
Recommendations for good practice in MS-based lipidomics
Köfeler, H. C., Ahrends, R., Baker, E. S., Ekroos, K., Han, X., Hoffmann, N., … Liebisch, G. (2021, January 1). Journal of Lipid Research.
2021 article
Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes
Luo, Y.-S., Chen, Z., Blanchette, A. D., Zhou, Y.-H., Wright, F. A., Baker, E. S., … Rusyn, I. (2021, January 13). Food and Chemical Toxicology, Vol. 149.
2021 article
Spatial Distribution of Polycyclic Aromatic Hydrocarbon Contaminants after Hurricane Harvey in a Houston Neighborhood
Sansom, G. T., Kirsch, K. R., Casillas, G. A., Camargo, K., Wade, T. L., Knap, A. H., … Horney, J. A. (2021, March 1). Journal of Health and Pollution.
2021 article
Utilizing Ion Mobility-Mass Spectrometry to Investigate the Unfolding Pathway of Cu/Zn Superoxide Dismutase
Butler, K. E., Takinami, Y., Rainczuk, A., Baker, E. S., & Roberts, B. R. (2021, February 9). Frontiers in Chemistry, Vol. 9.
2021 article
Utilizing ion mobility spectrometry-mass spectrometry for the characterization and detection of persistent organic pollutants and their metabolites
Aly, N. A., Dodds, J. N., Luo, Y.-S., Grimm, F. A., Foster, M. K., Rusyn, I., & Baker, E. S. (2021, October 20). Analytical and Bioanalytical Chemistry, Vol. 10.
2021 article
Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT™ derivatized N-linked glycans in biological samples
Butler, K. E., Kalmar, J. G., Muddiman, D. C., & Baker, E. S. (2021, August 4). Analytical and Bioanalytical Chemistry, Vol. 8.
2020 article
A Comparative Analysis of Analytical Techniques for Rapid Oil Spill Identification
Roman‐Hubers, A. T., McDonald, T. J., Baker, E. S., Chiu, W. A., & Rusyn, I. (2020, December 14). Environmental Toxicology and Chemistry, Vol. 40, pp. 1034–1049.
2020 journal article
Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications
Journal of the American Society for Mass Spectrometry, 31(3), 642–650.
2020 article
Enhanced protocol for quantitative N-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)™
Kalmar, J. G., Butler, K. E., Baker, E. S., & Muddiman, D. C. (2020, August 26). Analytical and Bioanalytical Chemistry.
2020 article
From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics
Dodds, J. N., Alexander, N. L. M., Kirkwood, K. I., Foster, M. K. R., Hopkins, Z. R., Knappe, D. R. U., & Baker, E. S. (2020, November 2). Analytical Chemistry, Vol. 93, pp. 641–656.
2020 article
From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions
Odenkirk, M. T., Stratton, K. G., Bramer, L. M., Webb-Robertson, B.-J. M., Bloodsworth, K. J., Monroe, M. E., … Baker, E. S. (2020, December 30). Biomolecules.
2020 journal article
Metabolite collision cross section prediction without energy-minimized structures
The Analyst, 145(16), 5414–5418.
2020 article
Proteomic assessment of serum biomarkers of longevity in older men
Orwoll, E. S., Wiedrick, J., Nielson, C. M., Jacobs, J., Baker, E. S., Piehowski, P., … Lapidus, J. (2020, October 20). Aging Cell.
2020 article
Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances in Aqueous Film-Forming Foams Using Ion Mobility Spectrometry–Mass Spectrometry
Luo, Y.-S., Aly, N. A., McCord, J., Strynar, M. J., Chiu, W. A., Dodds, J. N., … Rusyn, I. (2020, November 11). Environmental Science & Technology, Vol. 54, pp. 15024–15034.
2020 journal article
Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)
Analytical Chemistry, 92(6), 4427–4435.
2020 article
Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems
Odenkirk, M. T., Zin, P. P. K., Ash, J. R., Reif, D. M., Fourches, D., & Baker, E. S. (2020, January 1). The Analyst, Vol. 145, pp. 7197–7209.
2020 journal article
Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident
Environmental Pollution, 265(B), 115009.
2020 article
Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools
Odenkirk, M. T., Stratton, K. G., Gritsenko, M. A., Bramer, L. M., Webb-Robertson, B.-J. M., Bloodsworth, K. J., … Baker, E. S. (2020, September 8). Molecular Omics, Vol. 16.
2019 article
Challenges in Identifying the Dark Molecules of Life
Monge, M. E., Dodds, J. N., Baker, E. S., Edison, A. S., & Fernández, F. M. (2019, March 18). Annual Review of Analytical Chemistry, Vol. 12, pp. 177–199.
Contributors: M. Monge *, J. Dodds n, n , A. Edison * & F. Fernaacutendez
2019 article
Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry
Zheng, X., Smith, F. B., Aly, N. A., Cai, J., Smith, R. D., Patterson, A. D., & Baker, E. S. (2019, May 16). Analytical and Bioanalytical Chemistry, Vol. 411, pp. 4673–4682.
Contributors: X. Zheng *, F. Smith*, N. Aly*, J. Cai *, R. Smith *, A. Patterson *, n
2019 article
Folding and Assembly of Short α, β, γ-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures
Zhang, Y., Zhong, Y., Connor, A. L., Miller, D. P., Cao, R., Shen, J., … Gong, B. (2019, August 5). Journal of the American Chemical Society, Vol. 141, pp. 14239–14248.
Contributors: Y. Zhang *, Y. Zhong *, A. Connor*, D. Miller *, R. Cao*, J. Shen *, B. Song *, *
2019 article
Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead
Dodds, J. N., & Baker, E. S. (2019, September 6). Journal of the American Society for Mass Spectrometry, Vol. 30, pp. 2185–2195.
Contributors: J. Dodds n & n
2019 article
Ion mobility spectrometry and the omics: Distinguishing isomers, molecular classes and contaminant ions in complex samples
Burnum-Johnson, K. E., Zheng, X., Dodds, J. N., Ash, J., Fourches, D., Nicora, C. D., … Baker, E. S. (2019, April 29). TrAC Trends in Analytical Chemistry, Vol. 116, pp. 292–299.
Contributors: K. Burnum-Johnson *, X. Zheng *, J. Dodds n, J. Ash n, D. Fourches n, C. Nicora *, J. Wendler *, T. Metz *
2019 article
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop
Baker, E. S., & Patti, G. J. (2019, August 22). Journal of the American Society for Mass Spectrometry, Vol. 30, pp. 2031–2036.
Contributors: n & G. Patti *
2019 article
Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS
Plante, P.-L., Francovic-Fontaine, É., May, J. C., McLean, J. A., Baker, E. S., Laviolette, F., … Corbeil, J. (2019, April 1). Analytical Chemistry, Vol. 91, pp. 5191–5199.
Contributors: P. Plante *, É. Francovic-Fontaine *, J. May *, J. McLean *, n , F. Laviolette *, M. Marchand *, J. Corbeil *
2019 article
Utilizing Drift Tube Ion Mobility Spectrometry for the Evaluation of Metabolites and Xenobiotics
Odenkirk, M. T., & Baker, E. S. (2019, November 15). Methods in Molecular Biology, Vol. 2084, pp. 35–54.
Contributors: M. Odenkirk n & n
2018 article
Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis
Kedia, K., Wendler, J. P., Baker, E. S., Burnum-Johnson, K. E., Jarsberg, L. G., Stratton, K. G., … Nahid, P. (2018, July 18). Tuberculosis, Vol. 112, pp. 52–61.
Contributors: K. Kedia *, J. Wendler *, * , K. Burnum-Johnson *, L. Jarsberg*, K. Stratton *, A. Wright *, P. Piehowski *
2018 article
Cell type-resolved human lung lipidome reveals cellular cooperation in lung function
Kyle, J. E., Clair, G., Bandyopadhyay, G., Misra, R. S., Zink, E. M., Bloodsworth, K. J., … Ansong, C. (2018, September 3). Scientific Reports, Vol. 8.
Contributors: J. Kyle *, G. Clair *, G. Bandyopadhyay *, R. Misra *, E. Zink *, K. Bloodsworth *, A. Shukla *, Y. Du *
2018 article
Comparing residential contamination in a Houston environmental justice neighborhood before and after Hurricane Harvey
Horney, J. A., Casillas, G. A., Baker, E., Stone, K. W., Kirsch, K. R., Camargo, K., … McDonald, T. J. (2018, February 8). PLoS ONE, Vol. 13.
Contributors: J. Horney *, G. Casillas *, * , K. Stone *, K. Kirsch *, K. Camargo *, T. Wade *, T. McDonald *
2018 article
Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations
Nagy, G., Chouinard, C. D., Attah, I. K., Webb, I. K., Garimella, S. V. B., Ibrahim, Y. M., … Smith, R. D. (2018, August 31). Electrophoresis, Vol. 39, pp. 3148–3155.
Contributors: G. Nagy *, C. Chouinard *, I. Attah *, I. Webb *, S. Garimella *, Y. Ibrahim *, * , R. Smith *
2018 article
Editorial overview: Omics
Barran, P., & Baker, E. (2018, February 1). Current Opinion in Chemical Biology, Vol. 42, pp. A1–A2.
Contributors: P. Barran * & *
2018 article
Evaluating Lipid Mediator Structural Complexity Using Ion Mobility Spectrometry Combined with Mass Spectrometry
Kyle, J. E., Aly, N., Zheng, X., Burnum-Johnson, K. E., Smith, R. D., & Baker, E. S. (2018, March 1). Bioanalysis, Vol. 10, pp. 279–289.
Contributors: J. Kyle *, N. Aly*, X. Zheng *, K. Burnum-Johnson *, R. Smith * & *
2018 article
Guest editor’s personal foreward
Baker, E. S., & Loo, R. O. (2018, March 16). International Journal of Mass Spectrometry, Vol. 427, pp. 1–3.
2018 article
High‐throughput serum proteomics for the identification of protein biomarkers of mortality in older men
Orwoll, E. S., Wiedrick, J., Jacobs, J., Baker, E. S., Piehowski, P., Petyuk, V., … Lapidus, J. (2018, February 5). Aging Cell, Vol. 17.
Contributors: E. Orwoll *, J. Wiedrick*, J. Jacobs *, * , P. Piehowski *, V. Petyuk *, Y. Gao *, T. Shi *
2018 article
Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility–Mass Spectrometry
Chouinard, C. D., Nagy, G., Webb, I. K., Shi, T., Baker, E. S., Prost, S. A., … Smith, R. D. (2018, August 17). Analytical Chemistry, Vol. 90, pp. 10889–10896.
Contributors: C. Chouinard *, G. Nagy *, I. Webb *, T. Shi *, * , S. Prost *, T. Liu *, Y. Ibrahim *, R. Smith *
2018 article
Ion Mobility-Mass Spectrometry in Metabolomic, Lipidomic, and Proteomic Analyses
Chouinard, C. D., Nagy, G., Smith, R. D., & Baker, E. S. (2018, December 14). Comprehensive Analytical Chemistry, Vol. 83, pp. 123–159.
Contributors: C. Chouinard *, G. Nagy *, R. Smith * & *
2018 content posted
Lactobacillus acidophilus disrupts collaborative multispecies bile acid metabolism
2018 article
Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations
Chouinard, C. D., Nagy, G., Webb, I. K., Garimella, S. V. B., Baker, E. S., Ibrahim, Y. M., & Smith, R. D. (2018, August 13). Analytical Chemistry, Vol. 90, pp. 11086–11091.
Contributors: C. Chouinard *, G. Nagy *, I. Webb *, S. Garimella *, * , Y. Ibrahim *, R. Smith *
2018 article
The MPLEx Protocol for Multi-omic Analyses of Soil Samples
Nicora, C. D., Burnum-Johnson, K. E., Nakayasu, E. S., Casey, C. P., White, R. A., III, Chowdhury, T. R., … Baker, E. S. (2018, May 30). Journal of Visualized Experiments, Vol. 2018.
Contributors: C. Nicora *, K. Burnum-Johnson *, E. Nakayasu *, C. Casey *, R. White *, T. Chowdhury *, J. Kyle *, Y. Kim *
2018 article
Unraveling the isomeric heterogeneity of glycans: ion mobility separations in structures for lossless ion manipulations
Nagy, G., Attah, I. K., Garimella, S. V. B., Tang, K., Ibrahim, Y. M., Baker, E. S., & Smith, R. D. (2018, January 1). Chemical Communications, Vol. 54, pp. 11701–11704.
Contributors: G. Nagy *, I. Attah *, S. Garimella *, K. Tang *, Y. Ibrahim *, * , R. Smith *
2018 article
Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions
MacLean, B. X., Pratt, B. S., Egertson, J. D., MacCoss, M. J., Smith, R. D., & Baker, E. S. (2018, July 25). Journal of the American Society for Mass Spectrometry, Vol. 29, pp. 2182–2188.
Contributors: B. MacLean *, B. Pratt *, J. Egertson *, M. MacCoss *, R. Smith * & *
2018 journal article
Utilizing Ion Mobility Spectrometry and Mass Spectrometry for the Analysis of Polycyclic Aromatic Hydrocarbons, Polychlorinated Biphenyls, Polybrominated Diphenyl Ethers and Their Metabolites
Analytica Chimica Acta, 1037, 265–273.
Contributors: X. Zheng *, K. Dupuis*, N. Aly*, Y. Zhou *, F. Smith*, K. Tang *, R. Smith *, *
2017 article
A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements
Orton, D. J., Tfaily, M. M., Moore, R. J., LaMarche, B. L., Zheng, X., Fillmore, T. L., … Baker, E. S. (2017, November 21). Analytical Chemistry, Vol. 90, pp. 737–744.
Contributors: D. Orton *, M. Tfaily *, R. Moore *, B. Lamarche*, X. Zheng *, T. Fillmore *, R. Chu *, K. Weitz *
2017 article
A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry
Zheng, X., Aly, N. A., Zhou, Y., Dupuis, K. T., Bilbao, A., Paurus, V. L., … Baker, E. S. (2017, January 1). Chemical Science, Vol. 8, pp. 7724–7736.
Contributors: X. Zheng *, N. Aly*, Y. Zhou *, K. Dupuis*, A. Bilbao *, V. Paurus *, D. Orton *, R. Wilson*
2017 article
An Interlaboratory Evaluation of Drift Tube Ion Mobility–Mass Spectrometry Collision Cross Section Measurements
Stow, S. M., Causon, T. J., Zheng, X., Kurulugama, R. T., Mairinger, T., May, J. C., … Fjeldsted, J. C. (2017, August 1). Analytical Chemistry, Vol. 89, pp. 9048–9055.
Contributors: S. Stow *, T. Causon *, X. Zheng *, R. Kurulugama *, T. Mairinger *, J. May *, E. Rennie *, *
2017 article
An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies
Bilbao, A., Gibbons, B. C., Slysz, G. W., Crowell, K. L., Monroe, M. E., Ibrahim, Y. M., … Baker, E. S. (2017, November 6). International Journal of Mass Spectrometry, Vol. 427, pp. 91–99.
Contributors: A. Bilbao *, B. Gibbons *, G. Slysz *, K. Crowell*, M. Monroe *, Y. Ibrahim *, R. Smith *, S. Payne *, *
2017 article
Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging
Burnum-Johnson, K. E., Baker, E. S., & Metz, T. O. (2017, March 29). Placenta, Vol. 60, pp. S67–S72.
Contributors: K. Burnum-Johnson *, * & T. Metz *
2017 article
Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM)
Deng, L., Garimella, S. V. B., Hamid, A. M., Webb, I. K., Attah, I. K., Norheim, R. V., … Smith, R. D. (2017, May 12). Analytical Chemistry, Vol. 89, pp. 6432–6439.
Contributors: L. Deng *, S. Garimella *, A. Hamid *, I. Webb *, I. Attah *, R. Norheim*, S. Prost *, X. Zheng *
2017 article
Coupling Front-End Separations, Ion Mobility Spectrometry, and Mass Spectrometry For Enhanced Multidimensional Biological and Environmental Analyses
Zheng, X., Wojcik, R., Zhang, X., Ibrahim, Y. M., Burnum-Johnson, K. E., Orton, D. J., … Baker, E. S. (2017, March 16). Annual Review of Analytical Chemistry, Vol. 10, pp. 71–92.
Contributors: X. Zheng *, R. Wojcik *, X. Zhang *, Y. Ibrahim *, K. Burnum-Johnson *, D. Orton *, M. Monroe *, R. Moore *, R. Smith *, *
2017 journal article
Distinguishing D- and L-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry
Chemical Communications, 53(56), 7913–7916.
Contributors: X. Zheng *, L. Deng *, * , Y. Ibrahim *, V. Petyuk * & R. Smith *
2017 article
Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics
Nielson, C. M., Wiedrick, J., Shen, J., Jacobs, J., Baker, E. S., Baraff, A., … Orwoll, E. S. (2017, March 18). Journal of Bone and Mineral Research, Vol. 32, pp. 1559–1567.
Contributors: C. Nielson *, J. Wiedrick*, J. Shen *, J. Jacobs *, * , A. Baraff*, P. Piehowski *, C. Lee *
2017 article
Ligand induced structural isomerism in phosphine coordinated gold clusters revealed by ion mobility mass spectrometry
Ligare, M. R., Baker, E. S., Laskin, J., & Johnson, G. E. (2017, January 1). Chemical Communications, Vol. 53, pp. 7389–7392.
Contributors: M. Ligare *, * , J. Laskin * & G. Johnson *
2017 article
Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations
Wojcik, R., Webb, I., Deng, L., Garimella, S., Prost, S., Ibrahim, Y., … Smith, R. (2017, January 18). International Journal of Molecular Sciences, Vol. 18.
Contributors: R. Wojcik *, I. Webb *, L. Deng *, S. Garimella *, S. Prost *, Y. Ibrahim *, * , R. Smith *
2017 article
New frontiers for mass spectrometry based upon structures for lossless ion manipulations
Ibrahim, Y. M., Hamid, A. M., Deng, L., Garimella, S. V. B., Webb, I. K., Baker, E. S., & Smith, R. D. (2017, January 1). The Analyst, Vol. 142, pp. 1010–1021.
Contributors: Y. Ibrahim *, A. Hamid *, L. Deng *, S. Garimella *, I. Webb *, * , R. Smith *
2017 article
Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses
Poad, B. L. J., Zheng, X., Mitchell, T. W., Smith, R. D., Baker, E. S., & Blanksby, S. J. (2017, December 8). Analytical Chemistry, Vol. 90, pp. 1292–1300.
Contributors: B. Poad *, X. Zheng *, T. Mitchell *, R. Smith *, * & S. Blanksby *
2017 article
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association
Ma, J., Casey, C. P., Zheng, X., Ibrahim, Y. M., Wilkins, C. S., Renslow, R. S., … Metz, T. O. (2017, May 12). Bioinformatics, Vol. 33, pp. 2715–2722.
Contributors: J. Ma *, C. Casey *, X. Zheng *, Y. Ibrahim *, C. Wilkins*, R. Renslow *, D. Thomas *, S. Payne *
2017 article
Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches
Zheng, X., Smith, R. D., & Baker, E. S. (2017, December 7). Current Opinion in Chemical Biology, Vol. 42, pp. 111–118.
Contributors: X. Zheng *, R. Smith * & *
2017 article
Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations
Deng, L., Webb, I. K., Garimella, S. V. B., Hamid, A. M., Zheng, X., Norheim, R. V., … Smith, R. D. (2017, March 25). Analytical Chemistry, Vol. 89, pp. 4628–4634.
Contributors: L. Deng *, I. Webb *, S. Garimella *, A. Hamid *, X. Zheng *, R. Norheim*, S. Prost *, G. Anderson *
2017 article
Structural Elucidation ofcis/transDicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry
Zheng, X., Renslow, R. S., Makola, M. M., Webb, I. K., Deng, L., Thomas, D. G., … Baker, E. S. (2017, March 7). The Journal of Physical Chemistry Letters, Vol. 8, pp. 1381–1388.
Contributors: X. Zheng *, R. Renslow *, M. Makola*, I. Webb *, L. Deng *, D. Thomas *, N. Govind *, Y. Ibrahim *
2017 article
Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS
Garabedian, A., Benigni, P., Ramirez, C. E., Baker, E. S., Liu, T., Smith, R. D., & Fernandez-Lima, F. (2017, September 9). Journal of the American Society for Mass Spectrometry, Vol. 29, pp. 817–826.
Contributors: A. Garabedian*, P. Benigni*, C. Ramirez *, * , T. Liu *, R. Smith *, F. Fernandez-Lima *
2016 article
A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation
Webb, I. K., Garimella, S. V. B., Norheim, R. V., Baker, E. S., Ibrahim, Y. M., & Smith, R. D. (2016, April 20). Journal of the American Society for Mass Spectrometry, Vol. 27, pp. 1285–1288.
Contributors: I. Webb *, S. Garimella *, R. Norheim*, * , Y. Ibrahim * & R. Smith *
2016 article
A multi-omic future for microbiome studies
Jansson, J. K., & Baker, E. S. (2016, April 25). Nature Microbiology, Vol. 1.
Contributors: J. Jansson * & *
2016 article
Achieving High Resolution Ion Mobility Separations Using Traveling Waves in Compact Multiturn Structures for Lossless Ion Manipulations
Hamid, A. M., Garimella, S. V. B., Ibrahim, Y. M., Deng, L., Zheng, X., Webb, I. K., … Smith, R. D. (2016, August 1). Analytical Chemistry, Vol. 88, pp. 8949–8956.
Contributors: A. Hamid *, S. Garimella *, Y. Ibrahim *, L. Deng *, X. Zheng *, I. Webb *, G. Anderson *, S. Prost *
2016 article
Comparing identified and statistically significant lipids and polar metabolites in 15‐year old serum and dried blood spot samples for longitudinal studies
Kyle, J. E., Casey, C. P., Stratton, K. G., Zink, E. M., Kim, Y. M., Zheng, X., … Baker, E. S. (2016, December 13). Rapid Communications in Mass Spectrometry, Vol. 31, pp. 447–456.
Contributors: J. Kyle *, C. Casey *, K. Stratton *, E. Zink *, Y. Kim *, X. Zheng *, M. Monroe *, K. Weitz *
2016 chapter
Conventional and Advanced Separations in Mass Spectrometry-Based Metabolomics: Methodologies and Applications
In Encyclopedia of Spectroscopy and Spectrometry (pp. 376–384).
Contributors: H. Heyman *, X. Zhang *, K. Tang *, * & T. Metz *
2016 article
Correction: Surprising impact of remote groups on the folding–unfolding and dimer-chain equilibria of bifunctional H-bonding unimers
Liu, R., Chen, S., Baker, E. S., Smith, R. D., Zeng, X. C., & Gong, B. (2016, January 1). Chemical Communications, Vol. 52, p. 5205.
Contributors: R. Liu *, S. Chen *, * , R. Smith *, X. Zeng * & B. Gong *
2016 article
Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform
Ibrahim, Y. M., Garimella, S. V. B., Prost, S. A., Wojcik, R., Norheim, R. V., Baker, E. S., … Smith, R. D. (2016, November 16). Analytical Chemistry, Vol. 88, pp. 12152–12160.
Contributors: Y. Ibrahim *, S. Garimella *, S. Prost *, R. Wojcik *, R. Norheim*, * , I. Rusyn *, R. Smith *
2016 article
Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses
Zheng, X., Zhang, X., Schocker, N. S., Renslow, R. S., Orton, D. J., Khamsi, J., … Baker, E. S. (2016, September 7). Analytical and Bioanalytical Chemistry, Vol. 409, pp. 467–476.
Contributors: X. Zheng *, X. Zhang*, N. Schocker*, R. Renslow *, D. Orton *, J. Khamsi*, R. Ashmus *, I. Almeida *
2016 article
Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations
Deng, L., Ibrahim, Y. M., Garimella, S. V. B., Webb, I. K., Hamid, A. M., Norheim, R. V., … Smith, R. D. (2016, September 26). Analytical Chemistry, Vol. 88, pp. 10143–10150.
Contributors: L. Deng *, Y. Ibrahim *, S. Garimella *, I. Webb *, A. Hamid *, R. Norheim*, S. Prost *, J. Sandoval*, * , R. Smith *
2016 article
Integrating Ion Mobility Spectrometry Into Mass Spectrometry-Based Exposome Measurements: What Can it Add and How Far Can it Go?
Metz, T. O., Baker, E. S., Schymanski, E. L., Renslow, R. S., Thomas, D. G., Causon, T. J., … Teeguarden, J. G. (2016, December 6). Bioanalysis, Vol. 9, pp. 81–98.
Contributors: T. Metz *, * , E. Schymanski *, R. Renslow *, D. Thomas *, T. Causon *, I. Webb *, S. Hann *, R. Smith *, J. Teeguarden *
2016 article
Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry
Deng, L., Ibrahim, Y. M., Baker, E. S., Aly, N. A., Hamid, A. M., Zhang, X., … Smith, R. D. (2016, July 1). ChemistrySelect, Vol. 1, pp. 2396–2399.
Contributors: L. Deng *, Y. Ibrahim *, * , N. Aly*, A. Hamid *, X. Zhang *, X. Zheng *, S. Garimella *
2016 article
Mass spectrometry-based monitoring of millisecond protein–ligand binding dynamics using an automated microfluidic platform
Cong, Y., Katipamula, S., Trader, C. D., Orton, D. J., Geng, T., Baker, E. S., & Kelly, R. T. (2016, January 1). Lab on a Chip, Vol. 16, pp. 1544–1548.
Contributors: Y. Cong *, S. Katipamula*, C. Trader *, D. Orton *, T. Geng *, * , R. Kelly *
2016 article
Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations
Chen, T.-C., Ibrahim, Y. M., Webb, I. K., Garimella, S. V. B., Zhang, X., Hamid, A. M., … Smith, R. D. (2016, January 11). Analytical Chemistry, Vol. 88, pp. 1728–1733.
Contributors: T. Chen*, Y. Ibrahim *, I. Webb *, S. Garimella *, X. Zhang *, A. Hamid *, L. Deng *, W. Karnesky*
2016 journal article
Profiling microbial lignocellulose degradation and utilization by emergent omics technologies
Critical Reviews in Biotechnology, 37(5), 626–640.
Contributors: J. Rosnow *, L. Anderson *, R. Nair *, * & A. Wright *
2016 article
SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids
Zhang, X., Romm, M., Zheng, X., Zink, E. M., Kim, Y.-M., Burnum-Johnson, K. E., … Baker, E. S. (2016, December 1). Clinical Mass Spectrometry, Vol. 2, pp. 1–10.
Contributors: X. Zhang *, M. Romm*, X. Zheng *, E. Zink *, Y. Kim *, K. Burnum-Johnson *, D. Orton *, A. Apffel*
2016 article
Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry
Burnum-Johnson, K. E., Nie, S., Casey, C. P., Monroe, M. E., Orton, D. J., Ibrahim, Y. M., … Smith, R. D. (2016, September 26). Molecular & Cellular Proteomics, Vol. 15, pp. 3694–3705.
Contributors: K. Burnum-Johnson *, S. Nie*, C. Casey *, M. Monroe *, D. Orton *, Y. Ibrahim *, M. Gritsenko *, T. Clauss*
2016 article
Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry
Garimella, S. V. B., Ibrahim, Y. M., Tang, K., Webb, I. K., Baker, E. S., Tolmachev, A. V., … Smith, R. D. (2016, April 6). Journal of the American Society for Mass Spectrometry, Vol. 27, pp. 1128–1135.
Contributors: S. Garimella *, Y. Ibrahim *, K. Tang *, I. Webb *, * , A. Tolmachev*, T. Chen*, G. Anderson *, R. Smith *
2016 article
Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming
Garimella, S. V. B., Hamid, A. M., Deng, L., Ibrahim, Y. M., Webb, I. K., Baker, E. S., … Smith, R. D. (2016, November 2). Analytical Chemistry, Vol. 88, pp. 11877–11885.
Contributors: S. Garimella *, A. Hamid *, L. Deng *, Y. Ibrahim *, I. Webb *, * , S. Prost *, R. Norheim*, G. Anderson *, R. Smith *
2016 article
Surprising impact of remote groups on the folding–unfolding and dimer-chain equilibria of bifunctional H-bonding unimers
Liu, R., Cheng, S., Baker, E. S., Smith, R. D., Zeng, X. C., & Gong, B. (2016, January 1). Chemical Communications, Vol. 52, pp. 3773–3776.
Contributors: R. Liu *, S. Cheng *, * , R. Smith *, X. Zeng * & B. Gong *
2016 article
The fungal cultivar of leaf‐cutter ants produces specific enzymes in response to different plant substrates
Khadempour, L., Burnum‐Johnson, K. E., Baker, E. S., Nicora, C. D., Webb‐Robertson, B. J. M., White, R. A., … Currie, C. R. (2016, October 7). Molecular Ecology, Vol. 25, pp. 5795–5805.
Contributors: L. Khadempour *, K. Burnum-Johnson *, * , C. Nicora *, B. Webb-Robertson *, R. White *, M. Monroe *, E. Huang *, R. Smith *, C. Currie *
2016 article
The past, present and future of microbiome analyses
White, R. A., Callister, S. J., Moore, R. J., Baker, E. S., & Jansson, J. K. (2016, September 29). Nature Protocols, Vol. 11, pp. 4–8.
Contributors: R. White *, S. Callister *, R. Moore *, * & J. Jansson *
2016 article
Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13 m Serpentine Path Length Structures for Lossless Ion Manipulations Module
Deng, L., Ibrahim, Y. M., Hamid, A. M., Garimella, S. V. B., Webb, I. K., Zheng, X., … Smith, R. D. (2016, August 17). Analytical Chemistry, Vol. 88, pp. 8957–8964.
Contributors: L. Deng *, Y. Ibrahim *, A. Hamid *, S. Garimella *, I. Webb *, X. Zheng *, S. Prost *, J. Sandoval*
2016 article
Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry
Kyle, J. E., Zhang, X., Weitz, K. K., Monroe, M. E., Ibrahim, Y. M., Moore, R. J., … Baker, E. S. (2016, January 1). The Analyst, Vol. 141, pp. 1649–1659.
Contributors: J. Kyle *, X. Zhang *, K. Weitz *, M. Monroe *, Y. Ibrahim *, R. Moore *, J. Cha*, X. Sun *
2015 article
Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations
Zhang, X., Ibrahim, Y. M., Chen, T.-C., Kyle, J. E., Norheim, R. V., Monroe, M. E., … Baker, E. S. (2015, January 1). The Analyst, Vol. 140, pp. 6955–6963.
Contributors: X. Zhang *, Y. Ibrahim *, T. Chen*, J. Kyle *, R. Norheim*, M. Monroe *, R. Smith *, *
2015 article
Enhancing bottom‐up and top‐down proteomic measurements with ion mobility separations
Baker, E. S., Burnum‐Johnson, K. E., Ibrahim, Y. M., Orton, D. J., Monroe, M. E., Kelly, R. T., … Smith, R. D. (2015, June 5). PROTEOMICS, Vol. 15, pp. 2766–2776.
Contributors: * , K. Burnum-Johnson *, Y. Ibrahim *, D. Orton *, M. Monroe *, R. Kelly *, R. Moore *, X. Zhang *
2015 journal article
Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations
Analytical Chemistry, 87(12), 6010–6016.
Contributors: X. Zhang *, S. Garimella *, S. Prost *, I. Webb *, T. Chen*, K. Tang *, A. Tolmachev*, R. Norheim*
2015 article
Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90° turn and a switch
Garimella, S. V. B., Ibrahim, Y. M., Webb, I. K., Ipsen, A. B., Chen, T.-C., Tolmachev, A. V., … Smith, R. D. (2015, January 1). The Analyst, Vol. 140, pp. 6845–6852.
Contributors: S. Garimella *, Y. Ibrahim *, I. Webb *, A. Ipsen *, T. Chen*, A. Tolmachev*, * , G. Anderson *, R. Smith *
2015 article
Mass Spectrometry for Biomarker Development
Wu, C., Liu, T., Baker, E. S., Rodland, K. D., & Smith, R. D. (2015, January 1). Biomarkers in Disease, Vol. 1-2, pp. 17–48.
Contributors: C. Wu*, T. Liu *, * , K. Rodland * & R. Smith *
2015 chapter
Mass Spectrometry for Biomarker Development
In V. R. Preedy & V. B. Patel (Eds.), General Methods in Biomarker Research and their Applications (pp. 17–48). New York, NY: Springer.
Ed(s): V. Preedy & V. Patel
2015 article
Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus
Cha, J., Burnum-Johnson, K. E., Bartos, A., Li, Y., Baker, E. S., Tilton, S. C., … Dey, S. K. (2015, May 1). Journal of Biological Chemistry, Vol. 290, pp. 15337–15349.
Contributors: J. Cha, K. Burnum-Johnson *, A. Bartos, Y. Li, * , S. Tilton *, B. Webb-Robertson *, P. Piehowski
2014 article
Advancing the High Throughput Identification of Liver Fibrosis Protein Signatures Using Multiplexed Ion Mobility Spectrometry
Baker, E. S., Burnum-Johnson, K. E., Jacobs, J. M., Diamond, D. L., Brown, R. N., Ibrahim, Y. M., … Smith, R. D. (2014, January 9). Molecular & Cellular Proteomics, Vol. 13, pp. 1119–1127.
Contributors: * , K. Burnum-Johnson *, J. Jacobs *, D. Diamond*, R. Brown *, Y. Ibrahim *, D. Orton *, P. Piehowski *
2014 journal article
Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements
The Journal of the American Society for Mass Spectrometry, 25(12), 2020–2027.
Contributors: S. Prost *, K. Crowell*, * , Y. Ibrahim *, B. Clowers *, M. Monroe *, G. Anderson *, R. Smith *, S. Payne *
2014 article
Development of a new ion mobility time-of-flight mass spectrometer
Ibrahim, Y. M., Baker, E. S., Danielson, W. F., Norheim, R. V., Prior, D. C., Anderson, G. A., … Smith, R. D. (2014, July 28). International Journal of Mass Spectrometry, Vol. 377, pp. 655–662.
Contributors: Y. Ibrahim *, * , W. Danielson*, R. Norheim*, D. Prior*, G. Anderson *, M. Belov *, R. Smith *
2014 article
Focus on Advancing High Performance Mass Spectrometry, Honoring Dr. Richard D. Smith, Recipient of the 2013 Award for a Distinguished Contribution in Mass Spectrometry
Baker, E. S., Muddiman, D. C., & Loo, J. A. (2014, October 17). Journal of the American Society for Mass Spectrometry, Vol. 25, pp. 1997–1999.
Contributors: * , D. Muddiman n & J. Loo *
2014 article
Improving Ion Mobility Measurement Sensitivity by Utilizing Helium in an Ion Funnel Trap
Ibrahim, Y. M., Garimella, S. V. B., Tolmachev, A. V., Baker, E. S., & Smith, R. D. (2014, May 1). Analytical Chemistry, Vol. 86, pp. 5295–5299.
Contributors: Y. Ibrahim *, S. Garimella *, A. Tolmachev*, * & R. Smith *
2013 journal article
Combining heavy isotope labeling, chemical cross-linking, ion mobility spectrometry, and mass spectrometry to study the structure of homomultimeric protein complexes
Abstracts of Papers of the American Chemical Society, 246. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000329618401034&KeyUID=WOS:000329618401034
2013 article
Increasing confidence of LC–MS identifications by utilizing ion mobility spectrometry
Crowell, K. L., Baker, E. S., Payne, S. H., Ibrahim, Y. M., Monroe, M. E., Slysz, G. W., … Smith, R. D. (2013, July 5). International Journal of Mass Spectrometry, Vol. 354, pp. 312–317.
Contributors: K. Crowell*, * , S. Payne *, Y. Ibrahim *, M. Monroe *, G. Slysz *, B. LaMarche*, V. Petyuk *
2013 article
LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets
Crowell, K. L., Slysz, G. W., Baker, E. S., LaMarche, B. L., Monroe, M. E., Ibrahim, Y. M., … Smith, R. D. (2013, September 5). Bioinformatics, Vol. 29, pp. 2804–2805.
Contributors: K. Crowell*, G. Slysz *, * , B. LaMarche*, M. Monroe *, Y. Ibrahim *, S. Payne *, G. Anderson *, R. Smith *
2013 article
Mixed-Isotope Labeling with LC-IMS-MS for Characterization of Protein–Protein Interactions by Chemical Cross-Linking
Merkley, E. D., Baker, E. S., Crowell, K. L., Orton, D. J., Taverner, T., Ansong, C., … Adkins, J. N. (2013, February 19). Journal of the American Society for Mass Spectrometry, Vol. 24, pp. 444–449.
Contributors: E. Merkley *, * , K. Crowell*, D. Orton *, T. Taverner, C. Ansong *, Y. Ibrahim *, M. Burnet *
2013 article
Redox states of Desulfovibrio vulgaris DsrC, a key protein in dissimilatory sulfite reduction
Venceslau, S. S., Cort, J. R., Baker, E. S., Chu, R. K., Robinson, E. W., Dahl, C., … Pereira, I. A. C. (2013, November 1). Biochemical and Biophysical Research Communications, Vol. 441, pp. 732–736.
Contributors: S. Venceslau *, J. Cort *, * , R. Chu *, E. Robinson *, C. Dahl *, L. Saraiva *, I. Pereira *
2012 journal article
Evaluation of SDS Depletion Using an Affinity Spin Column and IMS-MS Detection
Proteomics, 12(21), 3138–3142.
Contributors: S. Hengel *, E. Floyd*, * , R. Zhao *, S. Wu * & L. Pasa-Tolic*
2012 article
Mass spectrometry for translational proteomics: progress and clinical implications
Baker, E., Liu, T., Petyuk, V. A., Burnum-Johnson, K. E., Ibrahim, Y. M., Anderson, G. A., & Smith, R. D. (2012, January 1). Genome Medicine, Vol. 4.
Contributors: * , T. Liu *, V. Petyuk *, K. Burnum-Johnson *, Y. Ibrahim *, G. Anderson *, R. Smith *
2012 article
Mass spectrometry-based proteomics: existing capabilities and future directions
Angel, T. E., Aryal, U. K., Hengel, S. M., Baker, E. S., Kelly, R. T., Robinson, E. W., & Smith, R. D. (2012, January 1). Chemical Society Reviews, Vol. 41, pp. 3912–3928.
Contributors: T. Angel *, U. Aryal *, S. Hengel *, * , R. Kelly *, E. Robinson *, R. Smith *
2012 article
Uterine Deletion of Trp53 Compromises Antioxidant Responses in the Mouse Decidua
Burnum, K. E., Hirota, Y., Baker, E. S., Yoshie, M., Ibrahim, Y. M., Monroe, M. E., … Dey, S. K. (2012, July 4). Endocrinology, Vol. 153, pp. 4568–4579.
Contributors: K. Burnum *, Y. Hirota *, * , M. Yoshie *, Y. Ibrahim *, M. Monroe *, G. Anderson *, R. Smith *, T. Daikoku *, S. Dey *
2011 chapter
New Developments in LC-MS and Other Hyphenated Techniques
In Sample Preparation in Biological Mass Spectrometry (pp. 981–1030).
2010 article
A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins
Buchko, G. W., Niemann, G., Baker, E. S., Belov, M. E., Smith, R. D., Heffron, F., … McDermott, J. E. (2010, January 1). Molecular BioSystems, Vol. 6, pp. 2448–2458.
Contributors: G. Buchko *, G. Niemann*, * , M. Belov *, R. Smith *, F. Heffron*, J. Adkins *, J. McDermott *
2010 article
Characterization of an ion mobility-multiplexed collision-induced dissociation-tandem time-of-flight mass spectrometry approach
Ibrahim, Y. M., Prior, D. C., Baker, E. S., Smith, R. D., & Belov, M. E. (2010, April 22). International Journal of Mass Spectrometry, Vol. 293, pp. 34–44.
Contributors: Y. Ibrahim *, D. Prior*, * , R. Smith * & M. Belov *
2010 journal article
Ion mobility separations in high throughput proteomics: A novel approach to protein detection and quantitation
Abstracts of Papers of the American Chemical Society, 240. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000208164705803&KeyUID=WOS:000208164705803
2010 article
Machine learning based prediction for peptide drift times in ion mobility spectrometry
Shah, A. R., Agarwal, K., Baker, E. S., Singhal, M., Mayampurath, A. M., Ibrahim, Y. M., … Smith, R. D. (2010, May 21). Bioinformatics, Vol. 26, pp. 1601–1607.
Contributors: A. Shah*, K. Agarwal *, * , M. Singhal*, A. Mayampurath *, Y. Ibrahim *, L. Kangas*, M. Monroe *
2009 article
Aminoglycoside antibiotics: A-site specific binding to 16S
Baker, E. S., Dupuis, N. F., & Bowers, M. T. (2009, February 22). International Journal of Mass Spectrometry, Vol. 283, pp. 105–111.
Contributors: * , N. Dupuis* & M. Bowers *
2009 article
An LC-IMS-MS Platform Providing Increased Dynamic Range for High-Throughput Proteomic Studies
Baker, E. S., Livesay, E. A., Orton, D. J., Moore, R. J., Danielson, W. F., Prior, D. C., … Belov, M. E. (2009, December 9). Journal of Proteome Research, Vol. 9, pp. 997–1006.
Contributors: * , E. Livesay*, D. Orton *, R. Moore *, W. Danielson*, D. Prior*, Y. Ibrahim *, B. LaMarche*
2009 article
Biases in ion transmission through an electrospray ionization-mass spectrometry capillary inlet
Page, J. S., Marginean, I., Baker, E. S., Kelly, R. T., Tang, K., & Smith, R. D. (2009, September 3). Journal of the American Society for Mass Spectrometry, Vol. 20, pp. 2265–2272.
Contributors: J. Page *, I. Marginean *, * , R. Kelly *, K. Tang * & R. Smith *
2009 article
DNA Hairpin, Pseudoknot, and Cruciform Stability in a Solvent-Free Environment
Baker, E. S., Dupuis, N. F., & Bowers, M. T. (2009, January 20). The Journal of Physical Chemistry B, Vol. 113, pp. 1722–1727.
Contributors: * , N. Dupuis* & M. Bowers *
2008 article
G-Quadruplex DNA Assemblies: Loop Length, Cation Identity, and Multimer Formation
Smargiasso, N., Rosu, F., Hsia, W., Colson, P., Baker, E. S., Bowers, M. T., … Gabelica, V. (2008, July 16). Journal of the American Chemical Society, Vol. 130, pp. 10208–10216.
Contributors: N. Smargiasso *, F. Rosu *, W. Hsia*, P. Colson *, * , M. Bowers *, E. De Pauw *, V. Gabelica *
2007 article
B-DNA Helix Stability in a Solvent-Free Environment
Baker, E. S., & Bowers, M. T. (2007, April 11). Journal of the American Society for Mass Spectrometry, Vol. 18, pp. 1188–1195.
Contributors: * & M. Bowers *
2007 article
High-resolution separations and improved ion production and transmission in metabolomics
Metz, T. O., Page, J. S., Baker, E. S., Tang, K., Ding, J., Shen, Y., & Smith, R. D. (2007, November 26). TrAC Trends in Analytical Chemistry, Vol. 27, pp. 205–214.
2007 article
Ion mobility spectrometry—mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures
Baker, E. S., Clowers, B. H., Li, F., Tang, K., Tolmachev, A. V., Prior, D. C., … Smith, R. D. (2007, April 7). Journal of the American Society for Mass Spectrometry, Vol. 18, pp. 1176–1187.
Contributors: * , B. Clowers *, F. Li *, K. Tang *, A. Tolmachev*, D. Prior*, M. Belov *, R. Smith *
2007 article
Optimization of Algorithms for Ion Mobility Calculations
Shvartsburg, A. A., Mashkevich, S. V., Baker, E. S., & Smith, R. D. (2007, February 15). The Journal of Physical Chemistry A, Vol. 111, pp. 2002–2010.
Contributors: A. Shvartsburg *, S. Mashkevich *, * & R. Smith *
2007 article
Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies
Baker, E. S., Tang, K., Danielson, W. F., Prior, D. C., & Smith, R. D. (2007, December 5). Journal of the American Society for Mass Spectrometry, Vol. 19, pp. 411–419.
Contributors: * , K. Tang *, W. Danielson*, D. Prior* & R. Smith *
2007 article
Stabilization and Structure of Telomeric and c-myc Region Intramolecular G-Quadruplexes: The Role of Central Cations and Small Planar Ligands
Gabelica, V., Baker, E. S., Teulade-Fichou, M.-P., Pauw, E. D., & Bowers, M. T. (2007, January 1). Journal of the American Chemical Society, Vol. 129, pp. 895–904.
Contributors: V. Gabelica *, * , M. Teulade-Fichou *, E. De Pauw * & M. Bowers *
2006 journal article
ANYL 227-Exploring the conformational diversity of proteins and peptides using high-resolution FAIMS and IMS
Abstracts of Papers of the American Chemical Society, 232. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207781601223&KeyUID=WOS:000207781601223
2006 article
Cyclo[n]pyrroles: Size and Site-Specific Binding to G-Quadruplexes
Baker, E. S., Lee, J. T., Sessler, J. L., & Bowers, M. T. (2006, February 3). Journal of the American Chemical Society, Vol. 128, pp. 2641–2648.
Contributors: * , J. Lee*, J. Sessler * & M. Bowers *
2006 article
G-quadruplexes in telomeric repeats are conserved in a solvent-free environment
Baker, E. S., Bernstein, S. L., Gabelica, V., Pauw, E. D., & Bowers, M. T. (2006, June 24). International Journal of Mass Spectrometry, Vol. 253, pp. 225–237.
Contributors: * , S. Bernstein*, V. Gabelica *, E. De Pauw * & M. Bowers *
2006 journal article
Non-covalent complexes of biological interest: Nucleotide-drug interactions and peptide/protein self assembly
Abstracts of Papers of the American Chemical Society, 231. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000238125900429&KeyUID=WOS:000238125900429
2006 article
PNA/dsDNA Complexes: Site Specific Binding and dsDNA Biosensor Applications
Baker, E. S., Hong, J. W., Gaylord, B. S., Bazan, G. C., & Bowers, M. T. (2006, June 14). Journal of the American Chemical Society, Vol. 128, pp. 8484–8492.
Contributors: * , J. Hong*, B. Gaylord*, G. Bazan * & M. Bowers *
2005 article
Probing Shapes of Bichromophoric Metal−Organic Complexes Using Ion Mobility Mass Spectrometry
Baker, E. S., Bushnell, J. E., Wecksler, S. R., Lim, M. D., Manard, M. J., Dupuis, N. F., … Bowers, M. T. (2005, December 1). Journal of the American Chemical Society, Vol. 127, pp. 18222–18228.
Contributors: * , J. Bushnell*, . Wecksler*, M. Lim *, M. Manard *, N. Dupuis*, P. Ford *, M. Bowers *
2005 article
Structural Analysis of Metal Interactions with the Dinucleotide Duplex, dCG·dCG, Using Ion Mobility Mass Spectrometry
Baker, E. S., Manard, M. J., Gidden, J., & Bowers, M. T. (2005, February 23). The Journal of Physical Chemistry B, Vol. 109, pp. 4808–4810.
Contributors: * , M. Manard *, J. Gidden* & M. Bowers *
2005 article
Structural characterization of G-quadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry
Baker, E. S., Bernstein, S. L., & Bowers, M. T. (2005, May 24). Journal of the American Society for Mass Spectrometry, Vol. 16, pp. 989–997.
Contributors: * , S. Bernstein* & M. Bowers *
2005 article
Structure of Hybrid Polyhedral Oligomeric Silsesquioxane Propyl Methacrylate Oligomers Using Ion Mobility Mass Spectrometry and Molecular Mechanics
Anderson, S. E., Baker, E. S., Mitchell, C., Haddad, T. S., & Bowers, M. T. (2005, April 15). Chemistry of Materials, Vol. 17, pp. 2537–2545.
Contributors: S. Anderson*, * , C. Mitchell*, T. Haddad* & M. Bowers *
2004 article
Diastereomer Assignment of an Olefin-Linked Bis-paracyclophane by Ion Mobility Mass Spectrometry
Baker, E. S., Hong, J. W., Gidden, J., Bartholomew, G. P., Bazan, G. C., & Bowers, M. T. (2004, May 1). Journal of the American Chemical Society, Vol. 126, pp. 6255–6257.
Contributors: * , J. Hong*, J. Gidden*, G. Bartholomew*, G. Bazan * & M. Bowers *
2004 article
Duplex Formation and the Onset of Helicity in Poly d(CG)nOligonucleotides in a Solvent-Free Environment
Gidden, J., Ferzoco, A., Baker, E. S., & Bowers, M. T. (2004, October 28). Journal of the American Chemical Society, Vol. 126, pp. 15132–15140.
Contributors: J. Gidden*, A. Ferzoco*, * & M. Bowers *
2004 journal article
Duplex formation and the onset of helicity in oligonucleotides.
Abstracts of Papers of the American Chemical Society, 227, U258. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000223655701333&KeyUID=WOS:000223655701333
2004 article
Isomeric Structural Characterization of Polyhedral Oligomeric Silsesquioxanes (POSS) with Styryl and Epoxy Phenyl Capping Agents
Baker, E. S., Gidden, J., Anderson, S. E., Haddad, T. S., & Bowers, M. T. (2004, April 3). Nano Letters, Vol. 4, pp. 779–785.
Contributors: * , J. Gidden*, S. Anderson*, T. Haddad* & M. Bowers *
2004 journal article
Microstructural and Conformational Studies of Polyether Copolymers
The International Journal of Mass Spectrometry, 238(3), 287–297.
Contributors: A. Jackson*, J. Scrivens *, J. Williams *, * , J. Gidden* & M. Bowers *
2004 journal article
Sequence Dependent Conformations of Glycidyl Methacrylate/Butyl Methacrylate Copolymers in the Gas Phase
The International Journal of Mass Spectrometry, 238(3), 279–286.
Contributors: * , J. Gidden*, W. Simonsick*, M. Grady* & M. Bowers *
2004 article
Sodium stabilization of dinucleotide multiplexes in the gas phase
Baker, E. S., Gidden, J., Ferzoco, A., & Bowers, M. T. (2004, January 1). Physical Chemistry Chemical Physics, Vol. 6, pp. 2786–2795.
Contributors: * , J. Gidden*, A. Ferzoco* & M. Bowers *
2004 journal article
Sodium stabilization of dinucleotide multiplexes in the gas phase
Physical Chemistry Chemical Physics, 6(10), 2786–2795. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000222182100032&KeyUID=WOS:000222182100032
2004 article
Structural motifs of DNA complexes in the gas phase
Gidden, J., Baker, E. S., Ferzoco, A., & Bowers, M. T. (2004, November 6). International Journal of Mass Spectrometry, Vol. 240, pp. 183–193.
Contributors: J. Gidden*, * , A. Ferzoco* & M. Bowers *
2004 chapter
The ion mobility mass spectrometry method and its application to duplex formation of oligonucleotides and aggregation of proteins
In Advances in Mass Spectrometry, Vol 16 (Vol. 16, pp. 189–200). http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000226631200011&KeyUID=WOS:000226631200011
2003 article
3-Dimensional structural characterization of cationized polyhedral oligomeric silsesquioxanes (POSS) with styryl and phenylethyl capping agents
Baker, E. S., Gidden, J., Fee, D. P., Kemper, P. R., Anderson, S. E., & Bowers, M. T. (2003, April 30). International Journal of Mass Spectrometry, Vol. 227, pp. 205–216.
Contributors: * , J. Gidden*, D. Fee*, P. Kemper*, S. Anderson* & M. Bowers *
2002 article
Application of ion mobility to the gas-phase conformational analysis of polyhedral oligomeric silsesquioxanes (POSS)
Gidden, J., Kemper, P. R., Shammel, E., Fee, D. P., Anderson, S., & Bowers, M. T. (2002, December 28). International Journal of Mass Spectrometry, Vol. 222, pp. 63–73.
Contributors: J. Gidden*, P. Kemper*, E. Shammel*, D. Fee*, S. Anderson* & M. Bowers *
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