2023 article
Aggregated Molecular Phenotype Scores: Enhancing Assessment and Visualization of Mass Spectrometry Imaging Data for Tissue-Based Diagnostics
Chappel, J. R., King, M. E., Fleming, J., Eberlin, L. S., Reif, D. M., & Baker, E. S. (2023, August 14). ANALYTICAL CHEMISTRY, Vol. 8.
2023 article
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut
Foley, M. H., Walker, M. E., Stewart, A. K., O'Flaherty, S., Gentry, E. C., Patel, S., β¦ Theriot, C. M. (2023, March 13). NATURE MICROBIOLOGY, Vol. 3.
2023 journal article
Integrative Chemical-Biological Grouping of Complex High Production Volume Substances from Lower Olefin Manufacturing Streams
TOXICS, 11(7).
2023 journal article
Using Multidimensional Separations to Distinguish Isomeric Amino Acid-Bile Acid Conjugates and Assess Their Presence and Perturbations in Model Systems
ANALYTICAL CHEMISTRY, 95(41), 15357β15366.
2022 article
A High-Throughput Ion Mobility Spectrometry-Mass Spectrometry Screening Method for Opioid Profiling
Butler, K. E., & Baker, E. S. (2022, September 22). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 9.
2022 journal article
A Preprocessing Tool for Enhanced Ion Mobility-Mass Spectrometry-Based Omics Workflows
JOURNAL OF PROTEOME RESEARCH, 21(3), 798β807.
2022 journal article
Analysis of per- and polyfluoroalkyl substances in Houston Ship Channel and Galveston Bay following a large-scale industrial fire using ion-mobility-spectrometry-mass spectrometry
JOURNAL OF ENVIRONMENTAL SCIENCES, 115, 350β362.
2022 article
Assessing the Fate of Dissolved Organic Compounds in Landfill Leachate and Wastewater Treatment Systems
Doyle, M. G., Odenkirk, M. T., Stewart, A. K., Nelson, J. P., Baker, E. S., & Cruz, F. (2022, November 1). ACS ES&T WATER, Vol. 11.
2022 article
CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics
Rainey, M. A., Watson, C. A., Asef, C. K., Foster, M. R., Baker, E. S., & Fernandez, F. M. (2022, December 6). ANALYTICAL CHEMISTRY, Vol. 12.
2022 journal article
Characterization of compositional variability in petroleum substances
FUEL, 317.
2022 article
Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, and Validate Metabolites in Untargeted Analyses
Dodds, J. N., Wang, L., Patti, G. J., & Baker, E. S. (2022, January 28). ANALYTICAL CHEMISTRY, Vol. 1.
2022 journal article
Cupric Ions Selectively Modulate TRAAK-Phosphatidylserine Interactions
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 144(16), 7048β7053.
2022 article
Empowering women and addressing underrepresentation in the field of mass spectrometry
Rampler, E., Baker, E. S., Kirkwood, K. I., Schwaiger-Haber, M., Tam, M., Jones, M. A., & Sherman, M. (2022, February 16). EXPERT REVIEW OF PROTEOMICS, Vol. 2.
2022 journal article
Evaluation of Metabolism of a Defined Pesticide Mixture through Multiple In Vitro Liver Models
TOXICS, 10(10).
2022 journal article
High-Resolution Demultiplexing (HRdm) Ion Mobility Spectrometry-Mass Spectrometry for Aspartic and Isoaspartic Acid Determination and Screening
ANALYTICAL CHEMISTRY, 94(16), 6191β6199.
2022 article
Impacts of Gestational FireMaster 550 (FM 550) Exposure on the Neonatal Cortex are Sex Specific and Largely Attributable to the Organophosphate Esters
Witchey, S. K., Doyle, M. G., Fredenburg, J. D., St Armour, G., Horman, B., Odenkirk, M. T., β¦ Patisaul, H. B. (2022, September 8). NEUROENDOCRINOLOGY, Vol. 9.
2022 article
Introducing the Lipidomics Minimal Reporting Checklist
McDonald, J. G., Ejsing, C. S., Kopczynski, D., Holcapek, M., Aoki, J., Arita, M., β¦ Ekroos, K. (2022, August 8). NATURE METABOLISM, Vol. 8.
2022 article
Stability and Dissociation of Adeno-Associated Viral Capsids by Variable Temperature-Charge Detection-Mass Spectrometry
Kostelic, M. M., Ryan, J. P., Brown, L. S., Jackson, T. W., Hsieh, C.-C., Zak, C. K., β¦ Marty, M. T. (2022, August 18). ANALYTICAL CHEMISTRY, Vol. 8.
2022 journal article
Surface Modified Nano-Electrospray Needles Improve Sensitivity for Native Mass Spectrometry
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 33(6), 1031β1037.
2022 journal article
Temporal chemical composition changes in water below a crude oil slick irradiated with natural sunlight
MARINE POLLUTION BULLETIN, 185.
2022 journal article
Uncovering PFAS and Other Xenobiotics in the Dark Metabolome Using Ion Mobility Spectrometry, Mass Defect Analysis, and Machine Learning
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 56(12), 9133β9143.
2022 journal article
Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS)
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 56(6), 3441β3451.
2022 article
Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions
Kirkwood, K. I., Pratt, B. S., Shulman, N., Tamura, K., MacCoss, M. J., MacLean, B. X., & Baker, E. S. (2022, July 13). NATURE PROTOCOLS, Vol. 7.
2021 journal article
A Comparative Analysis of Analytical Techniques for Rapid Oil Spill Identification
ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY, 40(4), 1034β1049.
2021 journal article
Data Processing Workflow to Identify Structurally Related Compounds in Petroleum Substances Using Ion Mobility Spectrometry-Mass Spectrometry
ENERGY & FUELS, 35(13), 10529β10539.
2021 article
Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity
Kirkwood, K. I., Christopher, M. W., Burgess, J. L., Littau, S. R., Foster, K., Richey, K., β¦ Baker, E. S. (2021, December 7). JOURNAL OF PROTEOME RESEARCH, Vol. 12.
2021 review
From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics
[Review of ]. ANALYTICAL CHEMISTRY, 93(1), 641β656.
2021 journal article
From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem
MSYSTEMS, 6(2).
2021 journal article
From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions
BIOMOLECULES, 11(1).
2021 journal article
Improving the Speed and Selectivity of Newborn Screening Using Ion Mobility Spectrometry-Mass Spectrometry
ANALYTICAL CHEMISTRY, 93(51), 17094β17102.
2021 journal article
In situ imaging reveals disparity between prostaglandin localization and abundance of prostaglandin synthases
COMMUNICATIONS BIOLOGY, 4(1).
2021 journal article
Ion Mobility Spectrometry Characterization of the Intermediate Hydrogen-Containing Gold Cluster Au-7(PPh3)(7)H-5(2+)
JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 12(10), 2502β2508.
2021 journal article
Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments
ANALYTICAL CHEMISTRY, 93(22), 7763β7773.
2021 article
Per- and polyfluoroalkyl substances (PFAS)-contaminants of emerging concern
Baker, E. S., & Knappe, D. R. U. (2021, December 2). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 12.
2021 review
Recommendations for good practice in MS-based lipidomics
[Review of ]. JOURNAL OF LIPID RESEARCH, 62.
2021 journal article
Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes
FOOD AND CHEMICAL TOXICOLOGY, 149.
2021 journal article
Spatial Distribution of Polycyclic Aromatic Hydrocarbon Contaminants after Hurricane Harvey in a Houston Neighborhood.
Journal of Health & Pollution.
2021 journal article
Utilizing Ion Mobility-Mass Spectrometry to Investigate the Unfolding Pathway of Cu/Zn Superoxide Dismutase
FRONTIERS IN CHEMISTRY, 9.
2021 article
Utilizing ion mobility spectrometry-mass spectrometry for the characterization and detection of persistent organic pollutants and their metabolites
Aly, N. A., Dodds, J. N., Luo, Y.-S., Grimm, F. A., Foster, M. K., Rusyn, I., & Baker, E. S. (2021, October 20). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 10.
2021 article
Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT (TM) derivatized N-linked glycans in biological samples
Butler, K. E., Kalmar, J. G., Muddiman, D. C., & Baker, E. S. (2021, August 4). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 8.
2020 journal article
Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications
Journal of the American Society for Mass Spectrometry, 31(3), 642β650.
2020 journal article
Enhanced protocol for quantitativeN-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)(TM)
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(27), 7569β7579.
2020 journal article
Metabolite collision cross section prediction without energy-minimized structures
The Analyst, 145(16), 5414β5418.
2020 journal article
Proteomic assessment of serum biomarkers of longevity in older men
AGING CELL, 19(11).
2020 journal article
Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances in Aqueous Film-Forming Foams Using Ion Mobility Spectrometry-Mass Spectrometry
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 54(23), 15024β15034.
2020 journal article
Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)
Analytical Chemistry, 92(6), 4427β4435.
2020 journal article
Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems
ANALYST, 145(22), 7197β7209.
2020 journal article
Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident
Environmental Pollution, 265(B), 115009.
2020 journal article
Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools
MOLECULAR OMICS, 16(6).
2020 article
Utilizing Drift Tube Ion Mobility Spectrometry for the Evaluation of Metabolites and Xenobiotics
ION MOBILITY-MASS SPECTROMETRY: METHODS AND PROTOCOLS, Vol. 2084, pp. 35β54.
Contributors: M. Odenkirk n & nβ
2019 article
Challenges in Identifying the Dark Molecules of Life
ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, VOL 12, Vol. 12, pp. 177β199.
Contributors: M. Mongeβ*, J. Dodds n, nβ, A. Edison* & F. Fernaacutendez
2019 journal article
Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 411(19), 4673β4682.
Contributors: X. Zhengβ*, F. Smith*, N. Aly*, J. Caiβ*, R. Smithβ*, A. Pattersonβ*, nβ
2019 journal article
Folding and Assembly of Short Ξ±, Ξ², Γ-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures
Journal of the American Chemical Society, 141(36), 14239β14248.
Contributors: Y. Zhangβ*, Y. Zhongβ*, A. Connor*, D. Millerβ*, R. Cao*, J. Shenβ*, B. Songβ*, *β
2019 journal article
Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 30(11), 2185β2195.
Contributors: J. Dodds n & nβ
2019 book
Ion Mobility-Mass Spectrometry in Metabolomic, Lipidomic, and Proteomic Analyses
In Comprehensive Analytical Chemistry (Vol. 83, pp. 123β159).
Contributors: C. Chouinardβ*, G. Nagyβ*, R. Smithβ* & *β
2019 review
Ion mobility spectrometry and the omics: Distinguishing isomers, molecular classes and contaminant ions in complex samples
[Review of ]. TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 116, 292β299.
Contributors: K. Burnum-Johnsonβ*, X. Zhengβ*, J. Dodds n, J. Ash n, D. Fourches n, C. Nicoraβ*, J. Wendler*, T. Metzβ*
2019 journal article
Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop
JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 30(10), 2031β2036.
Contributors: & G. Pattiβ* nβ
2019 journal article
Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS
ANALYTICAL CHEMISTRY, 91(8), 5191β5199.
Contributors: P. Planteβ*, Γ. Francovic-Fontaine*, J. Mayβ*, J. McLeanβ*, nβ, F. Lavioletteβ*, M. Marchand*, J. Corbeilβ*
2018 journal article
A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements
Analytical Chemistry, 90(1), 737β744.
Contributors: D. Ortonβ*, M. Tfailyβ*, R. Mooreβ*, B. Lamarche*, X. Zhengβ*, T. Fillmoreβ*, R. Chu*, K. Weitzβ*
2018 journal article
An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies
International Journal of Mass Spectrometry, 427, 91β99.
Contributors: A. Bilbaoβ*, B. Gibbons*, G. Slysz*, K. Crowell*, M. Monroeβ*, Y. Ibrahimβ*, R. Smithβ*, S. Payneβ*, *β
2018 journal article
Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis
Tuberculosis, 112, 52β61.
Contributors: K. Kediaβ*, J. Wendler*, *β, K. Burnum-Johnsonβ*, L. Jarsberg*, K. Strattonβ*, A. Wrightβ*, P. Piehowskiβ*
2018 journal article
Cell type-resolved human lung lipidome reveals cellular cooperation in lung function
Scientific Reports, 8(1).
Contributors: J. Kyleβ*, G. Clairβ*, G. Bandyopadhyay*, R. Misra*, E. Zinkβ*, K. Bloodsworthβ*, A. Shuklaβ*, Y. Du*
2018 journal article
Comparing residential contamination in a Houston environmental justice neighborhood before and after Hurricane Harvey
PLoS ONE, 13(2).
Contributors: J. Horneyβ*, G. Casillasβ*, *β, K. Stoneβ*, K. Kirschβ*, K. Camargo*, T. Wadeβ*, T. McDonaldβ*
2018 journal article
Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations
Electrophoresis, 39(24), 3148β3155.
Contributors: G. Nagyβ*, C. Chouinardβ*, I. Attah*, I. Webbβ*, S. Garimellaβ*, Y. Ibrahimβ*, *β, R. Smithβ*
2018 journal article
Editorial overview: Omics
Current Opinion in Chemical Biology, 42, A1βA2.
2018 journal article
Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry
Bioanalysis, 10(5), 279β289.
Contributors: J. Kyleβ*, N. Aly*, X. Zhengβ*, K. Burnum-Johnsonβ*, R. Smithβ* & *β
2018 journal article
Guest editor's personal foreward
International Journal of Mass Spectrometry, 427, 1β3.
2018 journal article
High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men
Aging Cell, 17(2).
Contributors: E. Orwollβ*, J. Wiedrick*, J. Jacobsβ*, *β, P. Piehowskiβ*, V. Petyukβ*, Y. Gaoβ*, T. Shiβ*
2018 journal article
Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility-Mass Spectrometry
Analytical Chemistry, 90(18), 10889β10896.
Contributors: C. Chouinardβ*, G. Nagyβ*, I. Webbβ*, T. Shiβ*, *β, S. Prost*, T. Liuβ*, Y. Ibrahimβ*, R. Smithβ*
2018 content posted
Lactobacillus acidophilus disrupts collaborative multispecies bile acid metabolism
2018 journal article
Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses
Analytical Chemistry, 90(2), 1292β1300.
Contributors: B. Poadβ*, X. Zhengβ*, T. Mitchell*, R. Smithβ*, *β & S. Blanksbyβ*
2018 journal article
Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations
Analytical Chemistry, 90(18), 11086β11091.
Contributors: C. Chouinardβ*, G. Nagyβ*, I. Webbβ*, S. Garimellaβ*, *β, Y. Ibrahimβ*, R. Smithβ*
2018 journal article
Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches
Current Opinion in Chemical Biology, 42, 111β118.
Contributors: X. Zhengβ*, R. Smithβ* & *β
2018 journal article
The MPLEx protocol for multi-omic analyses of soil samples
Journal of Visualized Experiments, 2018(135).
Contributors: C. Nicoraβ*, K. Burnum-Johnsonβ*, E. Nakayasuβ*, C. Caseyβ*, R. Whiteβ*, T. Chowdhuryβ*, J. Kyleβ*, Y. Kimβ*
2018 journal article
Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS
Journal of the American Society for Mass Spectrometry, 29(5), 817β826.
Contributors: A. Garabedian*, P. Benigni*, C. Ramirez*, *β, T. Liu*, R. Smithβ*, F. Fernandez-Limaβ*
2018 journal article
Unraveling the isomeric heterogeneity of glycans: Ion mobility separations in structures for lossless ion manipulations
Chemical Communications, 54(83), 11701β11704.
Contributors: G. Nagyβ*, I. Attah*, S. Garimellaβ*, K. Tangβ*, Y. Ibrahimβ*, *β, R. Smithβ*
2018 journal article
Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions
Journal of the American Society for Mass Spectrometry, 29(11), 2182β2188.
Contributors: B. MacLeanβ*, B. Prattβ*, J. Egertson*, M. MacCossβ*, R. Smithβ* & *β
2018 journal article
Utilizing Ion Mobility Spectrometry and Mass Spectrometry for the Analysis of Polycyclic Aromatic Hydrocarbons, Polychlorinated Biphenyls, Polybrominated Diphenyl Ethers and Their Metabolites
Analytica Chimica Acta, 1037, 265β273.
Contributors: X. Zhengβ*, K. Dupuis*, N. Aly*, Y. Zhouβ*, F. Smith*, K. Tangβ*, R. Smithβ*, *β
2017 journal article
A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry
Chemical Science, 8(11), 7724β7736.
Contributors: X. Zhengβ*, N. Aly*, Y. Zhouβ*, K. Dupuis*, A. Bilbaoβ*, V. Paurusβ*, D. Ortonβ*, R. Wilson*
2017 journal article
An Interlaboratory Evaluation of Drift Tube Ion Mobility-Mass Spectrometry Collision Cross Section Measurements
Analytical Chemistry, 89(17), 9048β9055.
Contributors: S. Stow*, T. Causonβ*, X. Zhengβ*, R. Kurulugama*, T. Mairinger*, J. Mayβ*, E. Rennie*, *β
2017 journal article
Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging
Placenta, 60, S67βS72.
Contributors: K. Burnum-Johnsonβ*, *β & T. Metzβ*
2017 journal article
Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies
Rapid Communications in Mass Spectrometry, 31(5), 447β456.
Contributors: J. Kyleβ*, C. Caseyβ*, K. Strattonβ*, E. Zinkβ*, Y. Kimβ*, X. Zhengβ*, M. Monroeβ*, K. Weitzβ*
2017 journal article
Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM)
Analytical Chemistry, 89(12), 6432β6439.
Contributors: L. Dengβ*, S. Garimellaβ*, A. Hamidβ*, I. Webbβ*, I. Attah*, R. Norheim*, S. Prost*, X. Zhengβ*
2017 chapter
Conventional and Advanced Separations in Mass Spectrometry-Based Metabolomics: Methodologies and Applications
In Encyclopedia of Spectroscopy and Spectrometry (pp. 376β384).
Contributors: H. Heyman*, X. Zhang*, K. Tangβ*, *β & T. Metzβ*
2017 book
Coupling front-end separations, ion mobility spectrometry, and mass spectrometry for enhanced multidimensional biological and environmental analyses
In Annual Review of Analytical Chemistry (Vol. 10, pp. 71β92).
Contributors: X. Zhengβ*, R. Wojcikβ*, X. Zhangβ*, Y. Ibrahimβ*, K. Burnum-Johnsonβ*, D. Ortonβ*, M. Monroeβ*, R. Mooreβ*, R. Smithβ*, *β
2017 journal article
Distinguishing D- and L-aspartic and isoaspartic acids in amyloid Ξ² peptides with ultrahigh resolution ion mobility spectrometry
Chemical Communications, 53(56), 7913β7916.
Contributors: X. Zhengβ*, L. Dengβ*, *β, Y. Ibrahimβ*, V. Petyukβ* & R. Smithβ*
2017 journal article
Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses
Analytical and Bioanalytical Chemistry, 409(2), 467β476.
Contributors: X. Zhengβ*, X. Zhangβ*, N. Schocker*, R. Renslowβ*, D. Ortonβ*, J. Khamsi*, R. Ashmusβ*, I. Almeidaβ*
2017 journal article
Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics
Journal of Bone and Mineral Research, 32(7), 1559β1567.
Contributors: C. Nielson*, J. Wiedrick*, J. Shenβ*, J. Jacobsβ*, *β, A. Baraff*, P. Piehowskiβ*, C. Leeβ*
2017 journal article
Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go?
Bioanalysis, 9(1), 81β98.
Contributors: T. Metzβ*, *β, E. Schymanskiβ*, R. Renslowβ*, D. Thomas*, T. Causonβ*, I. Webbβ*, S. Hannβ*, R. Smithβ*, J. Teeguardenβ*
2017 journal article
Ligand induced structural isomerism in phosphine coordinated gold clusters revealed by ion mobility mass spectrometry
Chemical Communications, 53(53), 7389β7392.
Contributors: M. Ligare*, *β, J. Laskinβ* & G. Johnsonβ*
2017 journal article
Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations
International Journal of Molecular Sciences, 18(1).
Contributors: R. Wojcikβ*, I. Webbβ*, L. Dengβ*, S. Garimellaβ*, S. Prost*, Y. Ibrahimβ*, *β, R. Smithβ*
2017 journal article
New frontiers for mass spectrometry based upon structures for lossless ion manipulations
Analyst, 142(7), 1010β1021.
Contributors: Y. Ibrahimβ*, A. Hamidβ*, L. Dengβ*, S. Garimellaβ*, I. Webbβ*, *β, R. Smithβ*
2017 journal article
PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association
Bioinformatics (Oxford, England), 33(17), 2715β2722.
Contributors: J. Maβ*, C. Caseyβ*, X. Zhengβ*, Y. Ibrahimβ*, C. Wilkins*, R. Renslowβ*, D. Thomas*, S. Payneβ*
2017 journal article
Profiling microbial lignocellulose degradation and utilization by emergent omics technologies
Critical Reviews in Biotechnology, 37(5), 626β640.
Contributors: J. Rosnow*, L. Andersonβ*, R. Nairβ*, *β & A. Wrightβ*
2017 journal article
Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations
Analytical Chemistry, 89(8), 4628β4634.
Contributors: L. Dengβ*, I. Webbβ*, S. Garimellaβ*, A. Hamidβ*, X. Zhengβ*, R. Norheim*, S. Prost*, G. Anderson*
2017 journal article
Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry
Journal of Physical Chemistry Letters, 8(7), 1381β1388.
Contributors: X. Zhengβ*, R. Renslowβ*, M. Makola*, I. Webbβ*, L. Dengβ*, D. Thomas*, N. Govindβ*, Y. Ibrahimβ*
2016 journal article
A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation
Journal of the American Society For Mass Spectrometry, 27(7), 1285β1288.
Contributors: I. Webbβ*, S. Garimellaβ*, R. Norheim*, *β, Y. Ibrahimβ* & R. Smithβ*
2016 journal article
A multi-omic future for microbiome studies
Nature Microbiology, 1(5).
Contributors: J. Janssonβ* & *β
2016 journal article
Achieving High Resolution Ion Mobility Separations Using Traveling Waves in Compact Multiturn Structures for Lossless Ion Manipulations
Analytical Chemistry, 88(18), 8949β8956.
Contributors: A. Hamidβ*, S. Garimellaβ*, Y. Ibrahimβ*, L. Dengβ*, X. Zhengβ*, I. Webbβ*, G. Anderson*, S. Prost*
2016 journal article
Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform
Analytical Chemistry, 88(24), 12152β12160.
Contributors: Y. Ibrahimβ*, S. Garimellaβ*, S. Prost*, R. Wojcikβ*, R. Norheim*, *β, I. Rusynβ*, R. Smithβ*
2016 journal article
Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations
Analytical Chemistry, 88(20), 10143β10150.
Contributors: L. Dengβ*, Y. Ibrahimβ*, S. Garimellaβ*, I. Webbβ*, A. Hamidβ*, R. Norheim*, S. Prost*, J. Sandoval*, *β, R. Smithβ*
2016 journal article
Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry
Chemistryselect, 1(10), 2396β2399.
Contributors: L. Dengβ*, Y. Ibrahimβ*, *β, N. Aly*, A. Hamidβ*, X. Zhangβ*, X. Zhengβ*, S. Garimellaβ*
2016 journal article
Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform
Lab on a Chip, 16(9), 1544β1548.
Contributors: Y. Congβ*, S. Katipamula*, C. Trader*, D. Ortonβ*, T. Gengβ*, *β, R. Kellyβ*
2016 journal article
Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations
Analytical Chemistry, 88(3), 1728β1733.
Contributors: T. Chenβ*, Y. Ibrahimβ*, I. Webbβ*, S. Garimellaβ*, X. Zhang*, A. Hamidβ*, L. Dengβ*, W. Karnesky*
2016 journal article
SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids
Clinical Mass Spectrometry, 2, 1β10.
Contributors: X. Zhangβ*, M. Romm*, X. Zhengβ*, E. Zinkβ*, Y. Kimβ*, K. Burnum-Johnsonβ*, D. Ortonβ*, A. Apffel*
2016 journal article
Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry
Molecular &Amp; Cellular Proteomics, 15(12), 3694β3705.
Contributors: K. Burnum-Johnsonβ*, S. Nie*, C. Caseyβ*, M. Monroeβ*, D. Ortonβ*, Y. Ibrahimβ*, M. Gritsenkoβ*, T. Clauss*
2016 journal article
Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry
Journal of the American Society For Mass Spectrometry, 27(6), 1128β1135.
Contributors: S. Garimellaβ*, Y. Ibrahimβ*, K. Tangβ*, I. Webbβ*, *β, A. Tolmachevβ*, T. Chen*, G. Anderson*, R. Smithβ*
2016 journal article
Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming
Analytical Chemistry, 88(23), 11877β11885.
Contributors: S. Garimellaβ*, A. Hamidβ*, L. Dengβ*, Y. Ibrahimβ*, I. Webbβ*, *β, S. Prost*, R. Norheim*, G. Anderson*, R. Smithβ*
2016 journal article
Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers
Chemical Communications, 52(19), 3773β3776.
Contributors: R. Liu, S. Chengβ*, *β, R. Smithβ*, X. Zengβ* & B. Gongβ*
2016 journal article
Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers (vol 52, pg 3773, 2016)
Chemical Communications, 52(29), 5205.
Contributors: R. Liu, S. Chenβ*, *β, R. Smithβ*, X. Zeng* & B. Gongβ*
2016 journal article
The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates
Molecular Ecology, 25(22), 5795β5805.
Contributors: L. Khadempourβ*, K. Burnum-Johnsonβ*, *β, C. Nicoraβ*, B. Webb-Robertson*, R. Whiteβ*, M. Monroeβ*, E. Huang*, R. Smithβ*, C. Currieβ*
2016 journal article
The past, present and future of microbiome analyses
Nature Protocols, 11(11), 4β8.
Contributors: R. Whiteβ*, S. Callister*, R. Mooreβ*, *β & J. Janssonβ*
2016 journal article
Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13 m Serpentine Path Length Structures for Lossless Ion Manipulations Module
Analytical Chemistry, 88(18), 8957β8964.
Contributors: L. Dengβ*, Y. Ibrahimβ*, A. Hamidβ*, S. Garimellaβ*, I. Webbβ*, X. Zhengβ*, S. Prost*, J. Sandoval*
2016 journal article
Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry
Analyst, 141(5), 1649β1659.
Contributors: J. Kyleβ*, X. Zhangβ*, K. Weitzβ*, M. Monroeβ*, Y. Ibrahimβ*, R. Mooreβ*, J. Cha*, X. Sunβ*
2015 journal article
Development of a new ion mobility (quadrupole) time-of-flight mass spectrometer
International Journal of Mass Spectrometry, 377(1), 655β662.
Contributors: Y. Ibrahimβ*, *β, W. Danielson*, R. Norheim*, D. Prior*, G. Anderson*, M. Belov*, R. Smithβ*
2015 journal article
Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (ΞΌFAIMS/IMS-MS) separations
Analyst, 140(20), 6955β6963.
Contributors: X. Zhangβ*, Y. Ibrahimβ*, T. Chenβ*, J. Kyleβ*, R. Norheim*, M. Monroeβ*, R. Smithβ*, *β
2015 journal article
Enhancing bottom-up and top-down proteomic measurements with ion mobility separations
Proteomics, 15(16), 2766β2776.
Contributors: , K. Burnum-Johnsonβ*, Y. Ibrahimβ*, D. Ortonβ*, M. Monroeβ*, R. Kellyβ*, R. Mooreβ*, X. Zhangβ* *β
2015 journal article
Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations
Analytical Chemistry, 87(12), 6010β6016.
Contributors: X. Zhangβ*, S. Garimellaβ*, S. Prost*, I. Webbβ*, T. Chen*, K. Tangβ*, A. Tolmachevβ*, R. Norheim*
2015 journal article
Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90Β° turn and a switch.
The Analyst, 140(20), 6845β6852.
Contributors: S. Garimellaβ*, Y. Ibrahimβ*, I. Webbβ*, A. Ipsen*, T. Chen*, A. Tolmachevβ*, *β, G. Anderson*, R. Smithβ*
2015 chapter