Works (168)

Updated: April 11th, 2023 10:13

2023 article

Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut

Foley, M. H., Walker, M. E., Stewart, A. K., O'Flaherty, S., Gentry, E. C., Patel, S., … Theriot, C. M. (2023, March 13). NATURE MICROBIOLOGY, Vol. 3.

By: M. Foley, M. Walker, A. Stewart, S. O'Flaherty, E. Gentry*, S. Patel*, V. Beaty*, G. Allen n ...

Sources: Web Of Science, ORCID
Added: April 4, 2023

2022 article

A High-Throughput Ion Mobility Spectrometry-Mass Spectrometry Screening Method for Opioid Profiling

Butler, K. E., & Baker, E. S. (2022, September 22). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 9.

By: K. Butler n & E. Baker

Sources: Web Of Science, ORCID
Added: October 3, 2022

2022 journal article

A Preprocessing Tool for Enhanced Ion Mobility-Mass Spectrometry-Based Omics Workflows

JOURNAL OF PROTEOME RESEARCH, 21(3), 798–807.

By: A. Bilbao*, B. Gibbons*, S. Stow*, J. Kyle*, K. Bloodsworth*, S. Payne*, R. Smith*, Y. Ibrahim, E. Baker, J. Fjeldsted*

author keywords: mass spectrometry; ion mobility spectrometry; preprocessing software; time-of-flight detector saturation; data-independent acquisition; lipid annotation
Sources: Web Of Science, ORCID
Added: May 2, 2022

2022 journal article

Analysis of per- and polyfluoroalkyl substances in Houston Ship Channel and Galveston Bay following a large-scale industrial fire using ion-mobility-spectrometry-mass spectrometry

JOURNAL OF ENVIRONMENTAL SCIENCES, 115, 350–362.

By: A. Valdiviezo*, N. Aly*, Y. Luo*, A. Cordova*, G. Casillas*, M. Foster, E. Baker, I. Rusyn*

author keywords: Emergency; Environmental disaster; PFAS
Sources: Web Of Science, ORCID
Added: January 18, 2022

2022 article

Assessing the Fate of Dissolved Organic Compounds in Landfill Leachate and Wastewater Treatment Systems

Doyle, M. G., Odenkirk, M. T., Stewart, A. K., Nelson, J. P., Baker, E. S., & Cruz, F. (2022, November 1). ACS ES&T WATER, Vol. 11.

By: M. Doyle, M. Odenkirk, A. Stewart, J. Nelson, E. Baker & F. Cruz

author keywords: nontargeted analysis; anthropogenic chemicals; wastewater; landfill leachate; reverse osmosis
Sources: Web Of Science, ORCID
Added: November 2, 2022

2022 article

CCS Predictor 2.0: An Open-Source Jupyter Notebook Tool for Filtering Out False Positives in Metabolomics

Rainey, M. A., Watson, C. A., Asef, C. K., Foster, M. R., Baker, E. S., & Fernandez, F. M. (2022, December 6). ANALYTICAL CHEMISTRY, Vol. 12.

By: M. Rainey*, C. Watson*, C. Asef*, M. Foster, E. Baker & F. Fernandez*

Sources: Web Of Science, ORCID
Added: January 3, 2023

2022 journal article

Characterization of compositional variability in petroleum substances

FUEL, 317.

By: A. Roman-Hubers, A. Cordova, A. Rohde, W. Chiu, T. McDonald, F. Wright, J. Dodds, E. Baker, I. Rusyn

author keywords: UVCB; Registration; Variability; IMS-MS
Sources: Web Of Science, ORCID
Added: May 10, 2022

2022 article

Combining Isotopologue Workflows and Simultaneous Multidimensional Separations to Detect, Identify, and Validate Metabolites in Untargeted Analyses

Dodds, J. N., Wang, L., Patti, G. J., & Baker, E. S. (2022, January 28). ANALYTICAL CHEMISTRY, Vol. 1.

By: J. Dodds, L. Wang*, G. Patti* & E. Baker

Sources: Web Of Science, ORCID
Added: March 14, 2022

2022 journal article

Cupric Ions Selectively Modulate TRAAK-Phosphatidylserine Interactions

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 144(16), 7048–7053.

By: Y. Zhu*, S. Schrecke*, S. Tang*, M. Odenkirk, T. Walker*, L. Stover*, J. Lyu*, T. Zhang* ...

Sources: Web Of Science, ORCID
Added: June 6, 2022

2022 article

Empowering women and addressing underrepresentation in the field of mass spectrometry

Rampler, E., Baker, E. S., Kirkwood, K. I., Schwaiger-Haber, M., Tam, M., Jones, M. A., & Sherman, M. (2022, February 16). EXPERT REVIEW OF PROTEOMICS, Vol. 2.

By: E. Rampler*, E. Baker, K. Kirkwood, M. Schwaiger-Haber, M. Tam*, M. Jones*, M. Sherman*

author keywords: FeMS; ASMS; mass spectrometry; women; diversity
Sources: Web Of Science, ORCID
Added: March 7, 2022

2022 journal article

Evaluation of Metabolism of a Defined Pesticide Mixture through Multiple In Vitro Liver Models

TOXICS, 10(10).

By: A. Valdiviezo*, Y. Kato*, E. Baker, W. Chiu* & I. Rusyn*

author keywords: toxicokinetics; chemical mixtures; defined mixtures; human health risk assessment; nontargeted analyses; microphysiological systems
Sources: ORCID, Web Of Science
Added: October 2, 2022

2022 journal article

High-Resolution Demultiplexing (HRdm) Ion Mobility Spectrometry-Mass Spectrometry for Aspartic and Isoaspartic Acid Determination and Screening

ANALYTICAL CHEMISTRY, 94(16), 6191–6199.

By: K. Butler, J. Dodds, T. Flick*, I. Campuzano* & E. Baker

Sources: Web Of Science, ORCID
Added: May 23, 2022

2022 article

Impacts of Gestational FireMaster 550 (FM 550) Exposure on the Neonatal Cortex are Sex Specific and Largely Attributable to the Organophosphate Esters

Witchey, S. K., Doyle, M. G., Fredenburg, J. D., St Armour, G., Horman, B., Odenkirk, M. T., … Patisaul, H. B. (2022, September 8). NEUROENDOCRINOLOGY, Vol. 9.

By: S. Witchey, M. Doyle, J. Fredenburg n, G. St Armour, B. Horman, M. Odenkirk, D. Aylor, E. Baker, H. Patisaul

Sources: Web Of Science, ORCID
Added: September 26, 2022

2022 article

Introducing the Lipidomics Minimal Reporting Checklist

McDonald, J. G., Ejsing, C. S., Kopczynski, D., Holcapek, M., Aoki, J., Arita, M., … Ekroos, K. (2022, August 8). NATURE METABOLISM, Vol. 8.

By: J. McDonald*, C. Ejsing, D. Kopczynski, M. Holcapek, J. Aoki, M. Arita, M. Arita, E. Baker ...

Sources: Web Of Science, ORCID
Added: August 22, 2022

2022 article

Stability and Dissociation of Adeno-Associated Viral Capsids by Variable Temperature-Charge Detection-Mass Spectrometry

Kostelic, M. M., Ryan, J. P., Brown, L. S., Jackson, T. W., Hsieh, C.-C., Zak, C. K., … Marty, M. T. (2022, August 18). ANALYTICAL CHEMISTRY, Vol. 8.

By: M. Kostelic*, J. Ryan, L. Brown*, T. Jackson*, C. Hsieh*, C. Zak*, H. Sanders*, Y. Liu* ...

Sources: Web Of Science, ORCID
Added: September 12, 2022

2022 journal article

Surface Modified Nano-Electrospray Needles Improve Sensitivity for Native Mass Spectrometry

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 33(6), 1031–1037.

By: M. Kostelic*, C. Hsieh*, H. Sanders*, C. Zak*, J. Ryan, E. Baker, C. Aspinwall*, M. Marty*

author keywords: native mass spectrometry; charge detection mass spectrometry; electrospray ionization; silane chemistry
Sources: Web Of Science, ORCID
Added: June 20, 2022

2022 journal article

Temporal chemical composition changes in water below a crude oil slick irradiated with natural sunlight

MARINE POLLUTION BULLETIN, 185.

By: A. Roman-Hubers*, C. Aeppli, J. Dodds, E. Baker, K. McFarlin, D. Letinski, L. Zhao, D. Mitchell ...

author keywords: Oil; Photodegradation; Photooxidation; Petroleomics; Toxicity; Spill
Sources: Web Of Science, ORCID
Added: February 20, 2023

2022 journal article

Uncovering PFAS and Other Xenobiotics in the Dark Metabolome Using Ion Mobility Spectrometry, Mass Defect Analysis, and Machine Learning

ENVIRONMENTAL SCIENCE & TECHNOLOGY, 56(12), 9133–9143.

By: M. Foster, M. Rainey*, C. Watson*, J. Dodds, K. Kirkwood, F. Fernandez*, E. Baker

author keywords: xenobiotics; per- and polyfluoroalkyl substances; ion mobility spectrometry; mass spectrometry; mass defect; machine learning; PFAS
Sources: Web Of Science, ORCID
Added: July 5, 2022

2022 journal article

Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS)

ENVIRONMENTAL SCIENCE & TECHNOLOGY, 56(6), 3441–3451.

author keywords: Biomonitoring; contamination; per- and polyfluoroalkyl substances; fluoroethers; ion mobility; mass spectrometry; PFAS
Sources: Web Of Science, ORCID
Added: February 18, 2022

2022 article

Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions

Kirkwood, K. I., Pratt, B. S., Shulman, N., Tamura, K., MacCoss, M. J., MacLean, B. X., & Baker, E. S. (2022, July 13). NATURE PROTOCOLS, Vol. 7.

By: K. Kirkwood, B. Pratt*, N. Shulman*, K. Tamura*, M. MacCoss*, B. MacLean*, E. Baker

Sources: Web Of Science, ORCID
Added: July 26, 2022

2021 journal article

A Comparative Analysis of Analytical Techniques for Rapid Oil Spill Identification

ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY, 40(4), 1034–1049.

By: A. Roman-Hubers*, T. McDonald*, E. Baker, W. Chiu* & I. Rusyn*

author keywords: Ion mobility spectrometry– mass spectrometry; Fingerprinting; Petroleum
Sources: Web Of Science, ORCID
Added: April 5, 2021

2021 journal article

Data Processing Workflow to Identify Structurally Related Compounds in Petroleum Substances Using Ion Mobility Spectrometry-Mass Spectrometry

ENERGY & FUELS, 35(13), 10529–10539.

By: A. Roman-Hubers, A. Cordova, N. Aly, T. McDonald, D. Lloyd, F. Wright, E. Baker, W. Chiu, I. Rusyn

Sources: Web Of Science, ORCID
Added: July 26, 2021

2021 article

Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity

Kirkwood, K. I., Christopher, M. W., Burgess, J. L., Littau, S. R., Foster, K., Richey, K., … Baker, E. S. (2021, December 7). JOURNAL OF PROTEOME RESEARCH, Vol. 12.

By: K. Kirkwood, M. Christopher n, J. Burgess*, S. Littau*, K. Foster*, K. Richey*, B. Pratt*, N. Shulman* ...

author keywords: lipidomics; ion mobility spectrometry; spectral libraries; data annotation; smoke inhalation
Sources: Web Of Science, ORCID
Added: December 20, 2021

2021 review

From Pesticides to Per- and Polyfluoroalkyl Substances: An Evaluation of Recent Targeted and Untargeted Mass Spectrometry Methods for Xenobiotics

[Review of ]. ANALYTICAL CHEMISTRY, 93(1), 641–656.

Sources: Web Of Science, ORCID
Added: February 4, 2021

2021 journal article

From Plants to Ants: Fungal Modification of Leaf Lipids for Nutrition and Communication in the Leaf-Cutter Ant Fungal Garden Ecosystem

MSYSTEMS, 6(2).

By: L. Khadempour*, J. Kyle*, B. Webb-Robertson*, C. Nicora*, F. Smith*, R. Smith*, M. Lipton*, C. Currie*, E. Baker, K. Burnum-Johnson*

author keywords: 18:2; 18:3; alpha-linolenic acid; fungal garden ecosystem; interkingdom communication; leaf-cutter ants; lignocellulose degradation; linoleic acid; lipidomics; mass spectrometry
Sources: ORCID, Web Of Science
Added: April 28, 2021

2021 journal article

From Prevention to Disease Perturbations: A Multi-Omic Assessment of Exercise and Myocardial Infarctions

BIOMOLECULES, 11(1).

By: M. Odenkirk, K. Stratton*, L. Bramer*, B. Webb-Robertson*, K. Bloodsworth*, M. Monroe*, K. Burnum-Johnson*, E. Baker

author keywords: lipidomics; metabolomics; multi-omics; planned myocardial infarction (PMI); myocardial infarction (MI); exercise; heart; cheminformatics
Sources: Web Of Science, ORCID
Added: January 4, 2021

2021 journal article

Improving the Speed and Selectivity of Newborn Screening Using Ion Mobility Spectrometry-Mass Spectrometry

ANALYTICAL CHEMISTRY, 93(51), 17094–17102.

By: J. Dodds & E. Baker

Sources: Web Of Science, ORCID
Added: February 7, 2022

2021 journal article

In situ imaging reveals disparity between prostaglandin localization and abundance of prostaglandin synthases

COMMUNICATIONS BIOLOGY, 4(1).

By: K. Duncan*, X. Sun*, E. Baker, S. Dey* & I. Lanekoff*

Sources: Web Of Science, ORCID
Added: August 30, 2021

2021 journal article

Ion Mobility Spectrometry Characterization of the Intermediate Hydrogen-Containing Gold Cluster Au-7(PPh3)(7)H-5(2+)

JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 12(10), 2502–2508.

By: M. Ligare*, K. Morrison*, M. Hewitt*, J. Reveles*, N. Govind*, H. Hernandez*, E. Baker, B. Clowers*, J. Laskin*, G. Johnson*

Sources: Web Of Science, ORCID
Added: April 5, 2021

2021 journal article

Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments

ANALYTICAL CHEMISTRY, 93(22), 7763–7773.

By: M. Odenkirk, D. Reif & E. Baker

Sources: Web Of Science, ORCID
Added: July 19, 2021

2021 article

Per- and polyfluoroalkyl substances (PFAS)-contaminants of emerging concern

Baker, E. S., & Knappe, D. R. U. (2021, December 2). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 12.

By: E. Baker & D. Knappe

Sources: Web Of Science, ORCID
Added: December 13, 2021

2021 review

Recommendations for good practice in MS-based lipidomics

[Review of ]. JOURNAL OF LIPID RESEARCH, 62.

By: H. Koefeler, R. Ahrends*, E. Baker, K. Ekroos*, X. Han*, N. Hoffmann*, M. Holcapek*, M. Wenk*, G. Liebisch*

author keywords:   lipidomics; metabolomics; MS; chromatography; ion mobility spectrometry; phospholipids; sphingolipids; LC-MS; lipid identification
Sources: Web Of Science, ORCID
Added: February 7, 2022

2021 journal article

Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes

FOOD AND CHEMICAL TOXICOLOGY, 149.

By: Y. Luo*, Z. Chen*, A. Blanchette*, Y. Zhou, F. Wright, E. Baker, W. Chiu*, I. Rusyn*

author keywords: Cardiovascular; Heart rate; QT interval; Theophylline; Adenine; Azelate
Sources: ORCID, Web Of Science
Added: February 4, 2021

2021 journal article

Spatial Distribution of Polycyclic Aromatic Hydrocarbon Contaminants after Hurricane Harvey in a Houston Neighborhood.

Journal of Health & Pollution.

Source: ORCID
Added: April 28, 2021

2021 journal article

Utilizing Ion Mobility-Mass Spectrometry to Investigate the Unfolding Pathway of Cu/Zn Superoxide Dismutase

FRONTIERS IN CHEMISTRY, 9.

By: K. Butler, Y. Takinami*, A. Rainczuk*, E. Baker & B. Roberts*

author keywords: ion mobility spectrometry; native mass spectrometry; superoxide dismutase; SOD1; drift tube ion mobility spectrometry; trapped ion mobility spectrometry
Sources: Web Of Science, ORCID
Added: March 15, 2021

2021 article

Utilizing ion mobility spectrometry-mass spectrometry for the characterization and detection of persistent organic pollutants and their metabolites

Aly, N. A., Dodds, J. N., Luo, Y.-S., Grimm, F. A., Foster, M. K., Rusyn, I., & Baker, E. S. (2021, October 20). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 10.

By: N. Aly*, J. Dodds, Y. Luo*, F. Grimm*, M. Foster, I. Rusyn*, E. Baker

author keywords: Ion Mobility Spectrometry; Pesticides; Pharmaceuticals; PFAS
Sources: Web Of Science, ORCID
Added: November 1, 2021

2021 article

Utilizing liquid chromatography, ion mobility spectrometry, and mass spectrometry to assess INLIGHT (TM) derivatized N-linked glycans in biological samples

Butler, K. E., Kalmar, J. G., Muddiman, D. C., & Baker, E. S. (2021, August 4). ANALYTICAL AND BIOANALYTICAL CHEMISTRY, Vol. 8.

By: K. Butler, J. Kalmar n, D. Muddiman & E. Baker

author keywords: Glycomics; Ion mobility spectrometry; INLIGHT (TM); N-Linked glycans; LC-IMS-MS
Sources: Web Of Science, ORCID
Added: August 16, 2021

2020 journal article

Coupling IR-MALDESI with Drift Tube Ion Mobility-Mass Spectrometry for High-Throughput Screening and Imaging Applications

Journal of the American Society for Mass Spectrometry, 31(3), 642–650.

By: M. Ekelof n, J. Dodds n, S. Khodjaniyazova n, K. Garrard n, E. Baker & D. Muddiman

author keywords: mass spectrometry imaging; ion mobility spectrometry; IR-MALDESI; high-throughput; isomer resolution
Sources: ORCID, Web Of Science, Crossref
Added: March 23, 2020

2020 journal article

Enhanced protocol for quantitativeN-linked glycomics analysis using Individuality Normalization when Labeling with Isotopic Glycan Hydrazide Tags (INLIGHT)(TM)

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 412(27), 7569–7579.

By: J. Kalmar n, K. Butler, E. Baker & D. Muddiman

author keywords: Glycomics; Orbitrap; Sample preparation; INLIGHT (TM); N-linked glycans; HILIC; PGC; Reversed-phase; Chromatography
Sources: Web Of Science, ORCID
Added: September 14, 2020

2020 journal article

Metabolite collision cross section prediction without energy-minimized structures

The Analyst, 145(16), 5414–5418.

By: M. Soper-Hopper*, J. Vandegrift*, E. Baker & F. Fernandez*

Sources: Web Of Science, ORCID
Added: August 31, 2020

2020 journal article

Proteomic assessment of serum biomarkers of longevity in older men

AGING CELL, 19(11).

By: E. Orwoll*, J. Wiedrick*, C. Nielson*, J. Jacobs*, E. Baker, P. Piehowski*, V. Petyuk*, Y. Gao* ...

author keywords: aging; biomarker; inflammation; longevity; men; proteomics
Sources: Web Of Science, ORCID
Added: November 2, 2020

2020 journal article

Rapid Characterization of Emerging Per- and Polyfluoroalkyl Substances in Aqueous Film-Forming Foams Using Ion Mobility Spectrometry-Mass Spectrometry

ENVIRONMENTAL SCIENCE & TECHNOLOGY, 54(23), 15024–15034.

By: Y. Luo*, N. Aly*, J. McCord*, M. Strynar*, W. Chiu*, J. Dodds, E. Baker, I. Rusyn*

Sources: Web Of Science, ORCID
Added: January 19, 2021

2020 journal article

Rapid Characterization of Per- and Polyfluoroalkyl Substances (PFAS) by Ion Mobility Spectrometry-Mass Spectrometry (IMS-MS)

Analytical Chemistry, 92(6), 4427–4435.

By: J. Dodds n, Z. Hopkins n, D. Knappe n & E. Baker

Sources: ORCID, Web Of Science
Added: March 23, 2020

2020 journal article

Structural-based connectivity and omic phenotype evaluations (SCOPE): a cheminformatics toolbox for investigating lipidomic changes in complex systems

ANALYST, 145(22), 7197–7209.

By: M. Odenkirk, P. Zin, J. Ash, D. Reif, D. Fourches & E. Baker

Sources: Web Of Science, ORCID
Added: November 24, 2020

2020 journal article

Temporal and spatial analysis of per and polyfluoroalkyl substances in surface waters of Houston ship channel following a large-scale industrial fire incident

Environmental Pollution, 265(B), 115009.

By: N. Aly*, Y. Luo*, Y. Liu*, G. Casillas*, T. McDonald*, J. Kaihatu*, M. Jun*, N. Ellis* ...

Sources: Web Of Science, ORCID
Added: August 31, 2020

2020 journal article

Unveiling molecular signatures of preeclampsia and gestational diabetes mellitus with multi-omics and innovative cheminformatics visualization tools

MOLECULAR OMICS, 16(6).

By: M. Odenkirk, K. Stratton*, M. Gritsenko*, L. Bramer*, B. Webb-Robertson*, K. Bloodsworth*, K. Weitz*, A. Lipton* ...

Sources: Web Of Science, ORCID
Added: January 4, 2021

2020 article

Utilizing Drift Tube Ion Mobility Spectrometry for the Evaluation of Metabolites and Xenobiotics

ION MOBILITY-MASS SPECTROMETRY: METHODS AND PROTOCOLS, Vol. 2084, pp. 35–54.

By: M. Odenkirk & E. Baker

author keywords: Ion mobility spectrometry (IMS); Drift tube ion mobility spectrometry (DTIMS); Metabolomics; Exposomics; Collision cross section (CCS)
Sources: ORCID, Web Of Science
Added: December 5, 2019

2019 article

Challenges in Identifying the Dark Molecules of Life

ANNUAL REVIEW OF ANALYTICAL CHEMISTRY, VOL 12, Vol. 12, pp. 177–199.

By: M. Eugenia Monge*, J. Dodds, E. Baker, A. Edison* & F. Fernandez*

author keywords: metabolomics; metabolite identification; chromatography; ion mobility; tandem mass spectrometry; nuclear magnetic resonance spectroscopy
Sources: Web Of Science, ORCID
Added: July 1, 2019

2019 journal article

Evaluating the structural complexity of isomeric bile acids with ion mobility spectrometry

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 411(19), 4673–4682.

By: X. Zheng*, F. Smith*, N. Aly*, J. Cai*, R. Smith*, A. Patterson*, E. Baker

author keywords: Ion mobility spectrometry; Bile acids; Collisional cross sections
Sources: Web Of Science, ORCID
Added: July 29, 2019

2019 journal article

Folding and Assembly of Short α, β, Î-Hybrid Peptides: Minor Variations in Sequence and Drastic Differences in Higher-Level Structures

Journal of the American Chemical Society, 141(36), 14239–14248.

By: Y. Zhang*, Y. Zhong*, A. Connor*, D. Miller*, R. Cao*, J. Shen*, B. Song*, E. Baker ...

Source: ORCID
Added: December 5, 2019

2019 journal article

Ion Mobility Spectrometry: Fundamental Concepts, Instrumentation, Applications, and the Road Ahead

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 30(11), 2185–2195.

By: J. Dodds & E. Baker

author keywords: Ion mobility spectrometry; IMS; Untargeted metabolomics; Mass spectrometry
Sources: Web Of Science, ORCID
Added: November 25, 2019

2019 book

Ion Mobility-Mass Spectrometry in Metabolomic, Lipidomic, and Proteomic Analyses

In Comprehensive Analytical Chemistry (Vol. 83, pp. 123–159).

By: C. Chouinard*, G. Nagy*, R. Smith* & E. Baker

Source: ORCID
Added: December 5, 2019

2019 review

Ion mobility spectrometry and the omics: Distinguishing isomers, molecular classes and contaminant ions in complex samples

[Review of ]. TRAC-TRENDS IN ANALYTICAL CHEMISTRY, 116, 292–299.

By: K. Burnum-Johnson*, X. Zheng*, J. Dodds, J. Ash, D. Fourches, C. Nicora*, J. Wendler*, T. Metz* ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Omics; Proteomics; Lipidomics; Metabolomics; Glycomics; Exposomics
Sources: Web Of Science, ORCID
Added: July 1, 2019

2019 journal article

Perspectives on Data Analysis in Metabolomics: Points of Agreement and Disagreement from the 2018 ASMS Fall Workshop

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 30(10), 2031–2036.

By: E. Baker & G. Patti*

author keywords: Metabolomics; Informatics; ASMS Fall Workshop; Metabolism
Sources: Web Of Science, ORCID
Added: November 11, 2019

2019 journal article

Predicting Ion Mobility Collision Cross-Sections Using a Deep Neural Network: DeepCCS

ANALYTICAL CHEMISTRY, 91(8), 5191–5199.

By: P. Plante*, E. Francovic-Fontaine*, J. May*, J. McLean*, E. Baker, F. Laviolette*, M. Marchand*, J. Corbeil*

Sources: Web Of Science, ORCID
Added: May 13, 2019

2018 journal article

A Customizable Flow Injection System for Automated, High Throughput, and Time Sensitive Ion Mobility Spectrometry and Mass Spectrometry Measurements

Analytical Chemistry, 90(1), 737–744.

By: D. Orton*, M. Tfaily*, R. Moore*, B. Lamarche*, X. Zheng*, T. Fillmore*, R. Chu*, K. Weitz* ...

Source: ORCID
Added: December 5, 2019

2018 journal article

An algorithm to correct saturated mass spectrometry ion abundances for enhanced quantitation and mass accuracy in omic studies

International Journal of Mass Spectrometry, 427, 91–99.

By: A. Bilbao*, B. Gibbons*, G. Slysz*, K. Crowell*, M. Monroe*, Y. Ibrahim, R. Smith*, S. Payne*, E. Baker

author keywords: Mass spectrometry; Detector saturation; Analog-to-digital converter saturation; Saturation correction; Isotopic envelope; Isotopic ratios; Quantitation
Source: ORCID
Added: December 5, 2019

2018 journal article

Application of multiplexed ion mobility spectrometry towards the identification of host protein signatures of treatment effect in pulmonary tuberculosis

Tuberculosis, 112, 52–61.

By: K. Kedia*, J. Wendler*, E. Baker, K. Burnum-Johnson*, L. Jarsberg, K. Stratton*, A. Wright*, P. Piehowski* ...

author keywords: Ion mobility spectrometry; Proteomics; Tuberculosis; Antibiotic treatment
Source: ORCID
Added: December 5, 2019

2018 journal article

Cell type-resolved human lung lipidome reveals cellular cooperation in lung function

Scientific Reports, 8(1).

By: J. Kyle*, G. Clair*, G. Bandyopadhyay*, R. Misra*, E. Zink*, K. Bloodsworth*, A. Shukla*, Y. Du* ...

Source: ORCID
Added: December 5, 2019

2018 journal article

Comparing residential contamination in a Houston environmental justice neighborhood before and after Hurricane Harvey

PLoS ONE, 13(2).

By: J. Horney*, G. Casillas*, E. Baker, K. Stone*, K. Kirsch*, K. Camargo*, T. Wade*, T. McDonald*

Source: ORCID
Added: December 5, 2019

2018 journal article

Distinguishing enantiomeric amino acids with chiral cyclodextrin adducts and structures for lossless ion manipulations

Electrophoresis, 39(24), 3148–3155.

By: G. Nagy*, C. Chouinard*, I. Attah*, I. Webb*, S. Garimella*, Y. Ibrahim, E. Baker, R. Smith*

author keywords: Chiral separations; Cyclodextrins; Enantiomers; Ion mobility-mass spectrometry; Structures for lossless ion manipulations
Source: ORCID
Added: December 5, 2019

2018 journal article

Editorial overview: Omics

Current Opinion in Chemical Biology, 42, A1–A2.

By: P. Barran* & E. Baker

Source: ORCID
Added: December 5, 2019

2018 journal article

Evaluating lipid mediator structural complexity using ion mobility spectrometry combined with mass spectrometry

Bioanalysis, 10(5), 279–289.

By: J. Kyle*, N. Aly*, X. Zheng*, K. Burnum-Johnson*, R. Smith* & E. Baker

author keywords: collision cross-section; ion mobility spectrometry; lipid mediators
Source: ORCID
Added: December 5, 2019

2018 journal article

Guest editor's personal foreward

International Journal of Mass Spectrometry, 427, 1–3.

By: E. Baker & R. Ogorzalek Loo*

Source: ORCID
Added: December 5, 2019

2018 journal article

High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men

Aging Cell, 17(2).

By: E. Orwoll*, J. Wiedrick*, J. Jacobs*, E. Baker, P. Piehowski*, V. Petyuk*, Y. Gao*, T. Shi* ...

author keywords: aging; biomarker; inflammation; men; mortality; proteomics
Source: ORCID
Added: December 5, 2019

2018 journal article

Improved Sensitivity and Separations for Phosphopeptides using Online Liquid Chromotography Coupled with Structures for Lossless Ion Manipulations Ion Mobility-Mass Spectrometry

Analytical Chemistry, 90(18), 10889–10896.

By: C. Chouinard*, G. Nagy*, I. Webb*, T. Shi*, E. Baker, S. Prost*, T. Liu*, Y. Ibrahim, R. Smith*

Source: ORCID
Added: December 5, 2019

2018 content posted

Lactobacillus acidophilus disrupts collaborative multispecies bile acid metabolism

By: S. Dautel*, N. Khan*, K. Brandvold*, C. Brislawn*, J. Hutchison*, K. Weitz*, H. Heyman*, H. Song* ...

Sources: Crossref, ORCID
Added: December 16, 2019

2018 journal article

Online Ozonolysis Combined with Ion Mobility-Mass Spectrometry Provides a New Platform for Lipid Isomer Analyses

Analytical Chemistry, 90(2), 1292–1300.

By: B. Poad*, X. Zheng*, T. Mitchell*, R. Smith*, E. Baker & S. Blanksby*

Source: ORCID
Added: December 5, 2019

2018 journal article

Rapid Ion Mobility Separations of Bile Acid Isomers Using Cyclodextrin Adducts and Structures for Lossless Ion Manipulations

Analytical Chemistry, 90(18), 11086–11091.

By: C. Chouinard*, G. Nagy*, I. Webb*, S. Garimella*, E. Baker, Y. Ibrahim, R. Smith*

Source: ORCID
Added: December 5, 2019

2018 journal article

Recent advances in lipid separations and structural elucidation using mass spectrometry combined with ion mobility spectrometry, ion-molecule reactions and fragmentation approaches

Current Opinion in Chemical Biology, 42, 111–118.

By: X. Zheng*, R. Smith* & E. Baker

Source: ORCID
Added: December 5, 2019

2018 journal article

The MPLEx protocol for multi-omic analyses of soil samples

Journal of Visualized Experiments, 2018(135).

By: C. Nicora*, K. Burnum-Johnson*, E. Nakayasu*, C. Casey*, R. White*, T. Chowdhury*, J. Kyle*, Y. Kim* ...

author keywords: Chemistry; Issue 135; MPLEx; Metaproteomics; Lipidomics; Metabolomics; Multi-omics; Mass Spectrometry
Source: ORCID
Added: December 5, 2019

2018 journal article

Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS

Journal of the American Society for Mass Spectrometry, 29(5), 817–826.

By: A. Garabedian*, P. Benigni*, C. Ramirez*, E. Baker, T. Liu*, R. Smith*, F. Fernandez-Lima*

author keywords: Discovery and targeted monitoring; Trapped ion mobility spectrometry; Mass; Spectrometry; Biomarker detection; Quantitative proteomics
Source: ORCID
Added: December 5, 2019

2018 journal article

Unraveling the isomeric heterogeneity of glycans: Ion mobility separations in structures for lossless ion manipulations

Chemical Communications, 54(83), 11701–11704.

By: G. Nagy*, I. Attah*, S. Garimella*, K. Tang*, Y. Ibrahim, E. Baker, R. Smith*

Source: ORCID
Added: December 5, 2019

2018 journal article

Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions

Journal of the American Society for Mass Spectrometry, 29(11), 2182–2188.

By: B. MacLean*, B. Pratt*, J. Egertson*, M. MacCoss*, R. Smith* & E. Baker

author keywords: Ion mobility spectrometry; Skyline; Data independent acquisition; Proteomics
Source: ORCID
Added: December 5, 2019

2018 journal article

Utilizing Ion Mobility Spectrometry and Mass Spectrometry for the Analysis of Polycyclic Aromatic Hydrocarbons, Polychlorinated Biphenyls, Polybrominated Diphenyl Ethers and Their Metabolites

Analytica Chimica Acta, 1037, 265–273.

By: X. Zheng*, K. Dupuis*, N. Aly*, Y. Zhou*, F. Smith*, K. Tang*, R. Smith*, E. Baker

author keywords: Ion mobility spectrometry; Collision cross section; Xenobiotics; Polycyclic aromatic hydrocarbons; Polychlorinated biphenyls; Polybrominated diphenyl ethers; Electrospray ionization; Atmospheric pressure chemical ionization; Atmospheric pressure photoionization
Sources: ORCID, Web Of Science
Added: December 5, 2019

2017 journal article

A structural examination and collision cross section database for over 500 metabolites and xenobiotics using drift tube ion mobility spectrometry

Chemical Science, 8(11), 7724–7736.

By: X. Zheng*, N. Aly*, Y. Zhou*, K. Dupuis*, A. Bilbao*, V. Paurus*, D. Orton*, R. Wilson* ...

Source: ORCID
Added: December 5, 2019

2017 journal article

An Interlaboratory Evaluation of Drift Tube Ion Mobility-Mass Spectrometry Collision Cross Section Measurements

Analytical Chemistry, 89(17), 9048–9055.

By: S. Stow*, T. Causon*, X. Zheng*, R. Kurulugama*, T. Mairinger*, J. May*, E. Rennie*, E. Baker ...

Source: ORCID
Added: December 5, 2019

2017 journal article

Characterizing the lipid and metabolite changes associated with placental function and pregnancy complications using ion mobility spectrometry-mass spectrometry and mass spectrometry imaging

Placenta, 60, S67–S72.

By: K. Burnum-Johnson*, E. Baker & T. Metz*

author keywords: Deep placentation; Pregnancy complications; Mass spectrometry imaging; Metabolome; Lipidome; Ion mobility spectrometry-mass spectrometry; Nano-DESI
Source: ORCID
Added: December 5, 2019

2017 journal article

Comparing identified and statistically significant lipids and polar metabolites in 15-year old serum and dried blood spot samples for longitudinal studies

Rapid Communications in Mass Spectrometry, 31(5), 447–456.

By: J. Kyle*, C. Casey*, K. Stratton*, E. Zink*, Y. Kim*, X. Zheng*, M. Monroe*, K. Weitz* ...

Source: ORCID
Added: December 5, 2019

2017 journal article

Compression Ratio Ion Mobility Programming (CRIMP) Accumulation and Compression of Billions of Ions for Ion Mobility-Mass Spectrometry Using Traveling Waves in Structures for Lossless Ion Manipulations (SLIM)

Analytical Chemistry, 89(12), 6432–6439.

By: L. Deng*, S. Garimella*, A. Hamid*, I. Webb*, I. Attah*, R. Norheim*, S. Prost*, X. Zheng* ...

Source: ORCID
Added: December 5, 2019

2017 chapter

Conventional and Advanced Separations in Mass Spectrometry-Based Metabolomics: Methodologies and Applications

In Encyclopedia of Spectroscopy and Spectrometry (pp. 376–384).

By: H. Heyman*, X. Zhang*, K. Tang*, E. Baker & T. Metz*

Sources: ORCID, Crossref
Added: December 5, 2019

2017 book

Coupling front-end separations, ion mobility spectrometry, and mass spectrometry for enhanced multidimensional biological and environmental analyses

In Annual Review of Analytical Chemistry (Vol. 10, pp. 71–92).

By: X. Zheng*, R. Wojcik*, X. Zhang*, Y. Ibrahim, K. Burnum-Johnson*, D. Orton*, M. Monroe*, R. Moore*, R. Smith*, E. Baker

author keywords: drift tube IMS; gas chromatography; supercritical fluid chromatography; liquid chromatography; solid-phase extraction; capillary electrophoresis; field asymmetric ion mobility spectrometry; microfluidics; structure for lossless ion manipulations
Source: ORCID
Added: December 5, 2019

2017 journal article

Distinguishing D- and L-aspartic and isoaspartic acids in amyloid β peptides with ultrahigh resolution ion mobility spectrometry

Chemical Communications, 53(56), 7913–7916.

By: X. Zheng*, L. Deng*, E. Baker, Y. Ibrahim, V. Petyuk* & R. Smith*

Sources: ORCID, Web Of Science
Added: December 5, 2019

2017 journal article

Enhancing glycan isomer separations with metal ions and positive and negative polarity ion mobility spectrometry-mass spectrometry analyses

Analytical and Bioanalytical Chemistry, 409(2), 467–476.

By: X. Zheng*, X. Zhang*, N. Schocker*, R. Renslow*, D. Orton*, J. Khamsi*, R. Ashmus*, I. Almeida* ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Glycans; O-Glycans; Isomers
Source: ORCID
Added: December 5, 2019

2017 journal article

Identification of Hip BMD Loss and Fracture Risk Markers Through Population-Based Serum Proteomics

Journal of Bone and Mineral Research, 32(7), 1559–1567.

By: C. Nielson*, J. Wiedrick*, J. Shen*, J. Jacobs*, E. Baker, A. Baraff*, P. Piehowski*, C. Lee* ...

author keywords: BIOCHEMICAL MARKERS OF BONE TURNOVER; OSTEOPOROSIS; GENERAL POPULATION STUDIES
Source: ORCID
Added: December 5, 2019

2017 journal article

Integrating ion mobility spectrometry into mass spectrometry-based exposome measurements: what can it add and how far can it go?

Bioanalysis, 9(1), 81–98.

By: T. Metz*, E. Baker, E. Schymanski*, R. Renslow*, D. Thomas*, T. Causon*, I. Webb*, S. Hann*, R. Smith*, J. Teeguarden*

author keywords: collision cross section; exposome; ion mobility spectrometry; mass spectrometry; metabolome
Source: ORCID
Added: December 5, 2019

2017 journal article

Ligand induced structural isomerism in phosphine coordinated gold clusters revealed by ion mobility mass spectrometry

Chemical Communications, 53(53), 7389–7392.

By: M. Ligare*, E. Baker, J. Laskin* & G. Johnson*

Source: ORCID
Added: December 5, 2019

2017 journal article

Lipid and Glycolipid Isomer Analyses Using Ultra-High Resolution Ion Mobility Spectrometry Separations

International Journal of Molecular Sciences, 18(1).

By: R. Wojcik*, I. Webb*, L. Deng*, S. Garimella*, S. Prost*, Y. Ibrahim, E. Baker, R. Smith*

author keywords: lipids; glycolipids; isomers; ion mobility spectrometry
Source: ORCID
Added: December 5, 2019

2017 journal article

New frontiers for mass spectrometry based upon structures for lossless ion manipulations

Analyst, 142(7), 1010–1021.

By: Y. Ibrahim, A. Hamid*, L. Deng*, S. Garimella*, I. Webb*, E. Baker, R. Smith*

Source: ORCID
Added: December 5, 2019

2017 journal article

PIXiE: an algorithm for automated ion mobility arrival time extraction and collision cross section calculation using global data association

Bioinformatics (Oxford, England), 33(17), 2715–2722.

By: J. Ma*, C. Casey*, X. Zheng*, Y. Ibrahim, C. Wilkins*, R. Renslow*, D. Thomas*, S. Payne* ...

Source: ORCID
Added: December 5, 2019

2017 journal article

Profiling microbial lignocellulose degradation and utilization by emergent omics technologies

Critical Reviews in Biotechnology, 37(5), 626–640.

By: J. Rosnow*, L. Anderson*, R. Nair*, E. Baker & A. Wright*

author keywords: Genomics; proteomics; transcriptomics; NMR; fluorescence-activated cell sorting; metabolomics; activity-based probes
Sources: ORCID, Web Of Science
Added: December 5, 2019

2017 journal article

Serpentine Ultralong Path with Extended Routing (SUPER) High Resolution Traveling Wave Ion Mobility-MS using Structures for Lossless Ion Manipulations

Analytical Chemistry, 89(8), 4628–4634.

By: L. Deng*, I. Webb*, S. Garimella*, A. Hamid*, X. Zheng*, R. Norheim*, S. Prost*, G. Anderson* ...

Source: ORCID
Added: December 5, 2019

2017 journal article

Structural Elucidation of cis/trans Dicaffeoylquinic Acid Photoisomerization Using Ion Mobility Spectrometry-Mass Spectrometry

Journal of Physical Chemistry Letters, 8(7), 1381–1388.

By: X. Zheng*, R. Renslow*, M. Makola*, I. Webb*, L. Deng*, D. Thomas*, N. Govind*, Y. Ibrahim ...

Source: ORCID
Added: December 5, 2019

2016 journal article

A Structures for Lossless Ion Manipulations (SLIM) Module for Collision Induced Dissociation

Journal of the American Society For Mass Spectrometry, 27(7), 1285–1288.

By: I. Webb*, S. Garimella*, R. Norheim*, E. Baker, Y. Ibrahim & R. Smith*

author keywords: Collision induced dissociation; Ion mobility spectrometry; rf Confinement; Ion optics; Peptide fragmentation; Manipulation; Conveyor
Source: ORCID
Added: December 5, 2019

2016 journal article

A multi-omic future for microbiome studies

Nature Microbiology, 1(5).

By: J. Jansson* & E. Baker

Source: ORCID
Added: December 5, 2019

2016 journal article

Achieving High Resolution Ion Mobility Separations Using Traveling Waves in Compact Multiturn Structures for Lossless Ion Manipulations

Analytical Chemistry, 88(18), 8949–8956.

By: A. Hamid*, S. Garimella*, Y. Ibrahim, L. Deng*, X. Zheng*, I. Webb*, G. Anderson*, S. Prost* ...

Source: ORCID
Added: December 5, 2019

2016 journal article

Development of an Ion Mobility Spectrometry-Orbitrap Mass Spectrometer Platform

Analytical Chemistry, 88(24), 12152–12160.

By: Y. Ibrahim, S. Garimella*, S. Prost*, R. Wojcik*, R. Norheim*, E. Baker, I. Rusyn*, R. Smith*

Source: ORCID
Added: December 5, 2019

2016 journal article

Greatly Increasing Trapped Ion Populations for Mobility Separations Using Traveling Waves in Structures for Lossless Ion Manipulations

Analytical Chemistry, 88(20), 10143–10150.

By: L. Deng*, Y. Ibrahim, S. Garimella*, I. Webb*, A. Hamid*, R. Norheim*, S. Prost*, J. Sandoval*, E. Baker, R. Smith*

Source: ORCID
Added: December 5, 2019

2016 journal article

Ion Mobility Separations of Isomers based upon Long Path Length Structures for Lossless Ion Manipulations Combined with Mass Spectrometry

Chemistryselect, 1(10), 2396–2399.

By: L. Deng*, Y. Ibrahim, E. Baker, N. Aly*, A. Hamid*, X. Zhang*, X. Zheng*, S. Garimella* ...

author keywords: Structures for Lossless Ion Manipulations (SLIM); Ion Mobility Spectrometry; Mass Spectrometry; Isomers
Source: ORCID
Added: December 5, 2019

2016 journal article

Mass spectrometry-based monitoring of millisecond protein-ligand binding dynamics using an automated microfluidic platform

Lab on a Chip, 16(9), 1544–1548.

By: Y. Cong*, S. Katipamula*, C. Trader*, D. Orton*, T. Geng*, E. Baker, R. Kelly*

Source: ORCID
Added: December 5, 2019

2016 journal article

Mobility-Selected Ion Trapping and Enrichment Using Structures for Lossless Ion Manipulations

Analytical Chemistry, 88(3), 1728–1733.

By: T. Chen*, Y. Ibrahim, I. Webb*, S. Garimella*, X. Zhang*, A. Hamid*, L. Deng*, W. Karnesky* ...

Source: ORCID
Added: December 5, 2019

2016 journal article

SPE-IMS-MS: An automated platform for sub-sixty second surveillance of endogenous metabolites and xenobiotics in biofluids

Clinical Mass Spectrometry, 2, 1–10.

By: X. Zhang*, M. Romm*, X. Zheng*, E. Zink*, Y. Kim*, K. Burnum-Johnson*, D. Orton*, A. Apffel* ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Metabolomics; Exposomics
Source: ORCID
Added: December 5, 2019

2016 journal article

Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry

Molecular &Amp; Cellular Proteomics, 15(12), 3694–3705.

By: K. Burnum-Johnson*, S. Nie*, C. Casey*, M. Monroe*, D. Orton*, Y. Ibrahim, M. Gritsenko*, T. Clauss* ...

Source: ORCID
Added: December 5, 2019

2016 journal article

Spatial Ion Peak Compression and its Utility in Ion Mobility Spectrometry

Journal of the American Society For Mass Spectrometry, 27(6), 1128–1135.

By: S. Garimella*, Y. Ibrahim, K. Tang*, I. Webb*, E. Baker, A. Tolmachev*, T. Chen*, G. Anderson*, R. Smith*

author keywords: Ion mobility spectrometry; Diffusion; Peak compression; High resolution IMS
Source: ORCID
Added: December 5, 2019

2016 journal article

Squeezing of Ion Populations and Peaks in Traveling Wave Ion Mobility Separations and Structures for Lossless Ion Manipulations Using Compression Ratio Ion Mobility Programming

Analytical Chemistry, 88(23), 11877–11885.

By: S. Garimella*, A. Hamid*, L. Deng*, Y. Ibrahim, I. Webb*, E. Baker, S. Prost*, R. Norheim*, G. Anderson*, R. Smith*

Source: ORCID
Added: December 5, 2019

2016 journal article

Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers

Chemical Communications, 52(19), 3773–3776.

Source: ORCID
Added: December 5, 2019

2016 journal article

Surprising impact of remote groups on the folding-unfolding and dimer-chain equilibria of bifunctional H-bonding unimers (vol 52, pg 3773, 2016)

Chemical Communications, 52(29), 5205.

By: R. Liu*, S. Chen*, E. Baker, R. Smith*, X. Zeng* & B. Gong*

Source: ORCID
Added: December 5, 2019

2016 journal article

The fungal cultivar of leaf-cutter ants produces specific enzymes in response to different plant substrates

Molecular Ecology, 25(22), 5795–5805.

By: L. Khadempour*, K. Burnum-Johnson*, E. Baker, C. Nicora*, B. Webb-Robertson*, R. White*, M. Monroe*, E. Huang*, R. Smith*, C. Currie*

author keywords: fungi; leaf-cutter ants; metaproteomics; microbial ecology; symbiosis
Source: ORCID
Added: December 5, 2019

2016 journal article

The past, present and future of microbiome analyses

Nature Protocols, 11(11), 4–8.

By: R. White*, S. Callister*, R. Moore*, E. Baker & J. Jansson*

Source: ORCID
Added: December 5, 2019

2016 journal article

Ultra-High Resolution Ion Mobility Separations Utilizing Traveling Waves in a 13 m Serpentine Path Length Structures for Lossless Ion Manipulations Module

Analytical Chemistry, 88(18), 8957–8964.

By: L. Deng*, Y. Ibrahim, A. Hamid*, S. Garimella*, I. Webb*, X. Zheng*, S. Prost*, J. Sandoval* ...

Source: ORCID
Added: December 5, 2019

2016 journal article

Uncovering biologically significant lipid isomers with liquid chromatography, ion mobility spectrometry and mass spectrometry

Analyst, 141(5), 1649–1659.

By: J. Kyle*, X. Zhang*, K. Weitz*, M. Monroe*, Y. Ibrahim, R. Moore*, J. Cha*, X. Sun* ...

Source: ORCID
Added: December 5, 2019

2015 journal article

Development of a new ion mobility (quadrupole) time-of-flight mass spectrometer

International Journal of Mass Spectrometry, 377(1), 655–662.

By: Y. Ibrahim, E. Baker, W. Danielson*, R. Norheim*, D. Prior*, G. Anderson*, M. Belov*, R. Smith*

Source: ORCID
Added: December 5, 2019

2015 journal article

Enhancing biological analyses with three dimensional field asymmetric ion mobility, low field drift tube ion mobility and mass spectrometry (μFAIMS/IMS-MS) separations

Analyst, 140(20), 6955–6963.

By: X. Zhang*, Y. Ibrahim, T. Chen*, J. Kyle*, R. Norheim*, M. Monroe*, R. Smith*, E. Baker

Source: ORCID
Added: December 5, 2019

2015 journal article

Enhancing bottom-up and top-down proteomic measurements with ion mobility separations

Proteomics, 15(16), 2766–2776.

By: E. Baker, K. Burnum-Johnson*, Y. Ibrahim, D. Orton*, M. Monroe*, R. Kelly*, R. Moore*, X. Zhang* ...

author keywords: Ion mobility separations; Ion mobility spectrometry; Mass spectrometry; Proteomics
Source: ORCID
Added: December 5, 2019

2015 journal article

Ion Trapping, Storage, and Ejection in Structures for Lossless Ion Manipulations

Analytical Chemistry, 87(12), 6010–6016.

By: X. Zhang*, S. Garimella*, S. Prost*, I. Webb*, T. Chen*, K. Tang*, A. Tolmachev*, R. Norheim* ...

Sources: ORCID, Web Of Science
Added: December 5, 2019

2015 journal article

Ion manipulations in structures for lossless ion manipulations (SLIM): computational evaluation of a 90° turn and a switch.

The Analyst, 140(20), 6845–6852.

By: S. Garimella*, Y. Ibrahim, I. Webb*, A. Ipsen*, T. Chen*, A. Tolmachev*, E. Baker, G. Anderson*, R. Smith*

Source: ORCID
Added: December 5, 2019

2015 chapter

Mass Spectrometry for Biomarker Development

In V. R. Preedy & V. B. Patel (Eds.), General Methods in Biomarker Research and their Applications (pp. 17–48). New York, NY: Springer.

By: C. Wu, T. Liu, E. Baker, K. Rodland & R. Smith

Ed(s): V. Preedy & V. Patel

Source: NC State University Libraries
Added: November 14, 2020

2015 book

Mass spectrometry for biomarker development

In General Methods in Biomarker Research and their Applications (Vol. 1-2, pp. 17–48).

By: C. Wu, T. Liu, E. Baker, K. Rodland & R. Smith

Source: ORCID
Added: December 5, 2019

2015 journal article

Muscle Segment Homeobox Genes Direct Embryonic Diapause by Limiting Inflammation in the Uterus

Journal of Biological Chemistry, 290(24), 15337–15349.

By: J. Cha*, K. Burnum-Johnson*, A. Bartos*, Y. Li*, E. Baker, S. Tilton*, B. Webb-Robertson*, P. Piehowski* ...

Source: ORCID
Added: December 5, 2019

2014 journal article

Advancing the High Throughput Identification of Liver Fibrosis Protein Signatures Using Multiplexed Ion Mobility Spectrometry*

Molecular &Amp; Cellular Proteomics, 13(4), 1119–1127.

By: E. Baker, K. Burnum-Johnson*, J. Jacobs*, D. Diamond*, R. Brown*, Y. Ibrahim, D. Orton*, P. Piehowski* ...

Source: ORCID
Added: December 5, 2019

2014 journal article

Detecting and Removing Data Artifacts in Hadamard Transform Ion Mobility-Mass Spectrometry Measurements

The Journal of the American Society for Mass Spectrometry, 25(12), 2020–2027.

By: S. Prost*, K. Crowell*, E. Baker, Y. Ibrahim, B. Clowers*, M. Monroe*, G. Anderson*, R. Smith*, S. Payne*

author keywords: Ion mobility; Computational proteomics; Hadamard transform; Bioinformatics; Sensitivity; Data analysis
Sources: ORCID, Web Of Science
Added: December 5, 2019

2014 article

Focus on Advancing High Performance Mass Spectrometry, Honoring Dr. Richard D. Smith, Recipient of the 2013 Award for a Distinguished Contribution in Mass Spectrometry

Baker, E. S., Muddiman, D. C., & Loo, J. A. (2014, December). JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, Vol. 25, pp. 1997–1999.

By: E. Baker, D. Muddiman & J. Loo*

Sources: ORCID, Web Of Science
Added: August 6, 2018

2014 journal article

Improving Ion Mobility Measurement Sensitivity by Utilizing Helium in an Ion Funnel Trap

Analytical Chemistry, 86(11), 5295–5299.

By: Y. Ibrahim, S. Garimella*, A. Tolmachev*, E. Baker & R. Smith*

Source: ORCID
Added: December 5, 2019

2013 journal article

Combining heavy isotope labeling, chemical cross-linking, ion mobility spectrometry, and mass spectrometry to study the structure of homomultimeric protein complexes

Abstracts of Papers of the American Chemical Society, 246. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000329618401034&KeyUID=WOS:000329618401034

By: E. Merkley, E. Baker, K. Crowell, D. Orton, T. Taverner, C. Ansong, Y. Ibrahim, M. Burnett ...

Source: ORCID
Added: December 5, 2019

2013 journal article

Increasing confidence of LC-MS identifications by utilizing ion mobility spectrometry

International Journal of Mass Spectrometry, 354, 312–317.

By: K. Crowell, E. Baker, S. Payne, Y. Ibrahim, M. Monroe, G. Slysz, B. LaMarche, V. Petyuk ...

author keywords: Ion mobility spectrometry; Mass spectrometry; Peptide identification; LC-MS; LC-IMS-MS; AMT tag; False discovery rate; Drift time
Source: ORCID
Added: December 5, 2019

2013 journal article

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets

Bioinformatics, 29(21), 2804–2805.

By: K. Crowell*, G. Slysz*, E. Baker, B. LaMarche*, M. Monroe*, Y. Ibrahim, S. Payne*, G. Anderson*, R. Smith*

Source: ORCID
Added: December 5, 2019

2013 journal article

Mixed-Isotope Labeling with LC-IMS-MS for Characterization of Protein-Protein Interactions by Chemical Cross-Linking

Journal of the American Society For Mass Spectrometry, 24(3), 444–449.

By: E. Merkley*, E. Baker, K. Crowell*, D. Orton*, T. Taverner*, C. Ansong*, Y. Ibrahim, M. Burnet* ...

author keywords: Cross-linking; Proteins; Cross-linked peptides; Ionmobility spectrometry; Mass Spectrometry; Liquid chromatography; Drift time; Protein structure; Heavy isotope labeling
Source: ORCID
Added: December 5, 2019

2013 journal article

Redox states of Desulfovibrio vulgaris DsrC, a key protein in dissimilatory sulfite reduction

Biochemical and Biophysical Research Communications, 441(4), 732–736.

By: S. Venceslau*, J. Cort*, E. Baker, R. Chu*, E. Robinson*, C. Dahl*, L. Saraiva*, I. Pereira*

author keywords: Dissimilatory sulfite reductase; Desulfovibrio; DsrC; MalPEG; Gel-shift assay
Source: ORCID
Added: December 5, 2019

2012 journal article

Evaluation of SDS Depletion Using an Affinity Spin Column and IMS-MS Detection

Proteomics, 12(21), 3138–3142.

By: S. Hengel*, E. Floyd*, E. Baker, R. Zhao*, S. Wu* & L. Pasa-Tolic*

author keywords: Detergents; Ion mobility; Sample preparation; SDS depletion; Technology
Sources: ORCID, Web Of Science
Added: December 5, 2019

2012 journal article

Mass spectrometry for translational proteomics: progress and clinical implications

Genome Medicine, 4(8).

By: E. Baker, T. Liu*, V. Petyuk*, K. Burnum-Johnson*, Y. Ibrahim, G. Anderson*, R. Smith*

author keywords: biomarker; clinical proteomics; ion mobility separations; mass spectrometry; multiple reaction monitoring; selected reaction monitoring; shotgun proteomics; targeted proteomics; translational proteomics
Source: ORCID
Added: December 5, 2019

2012 journal article

Mass spectrometry-based proteomics: existing capabilities and future directions

Chemical Society Reviews, 41(10), 3912–3928.

By: T. Angel*, U. Aryal*, S. Hengel*, E. Baker, R. Kelly*, E. Robinson*, R. Smith*

Source: ORCID
Added: December 5, 2019

2012 journal article

Uterine Deletion of Trp53 Compromises Antioxidant Responses in the Mouse Decidua

Endocrinology, 153(9), 4568–4579.

By: K. Burnum*, Y. Hirota*, E. Baker, M. Yoshie*, Y. Ibrahim, M. Monroe*, G. Anderson*, R. Smith*, T. Daikoku*, S. Dey*

Source: ORCID
Added: December 5, 2019

2011 chapter

New Developments in LC-MS and Other Hyphenated Techniques

In Sample Preparation in Biological Mass Spectrometry (pp. 981–1030).

By: M. Belov, R. Kurulugama, D. Lopez-Ferrer, Y. Ibrahim & E. Baker

author keywords: Reversed-phase HPLC; Strong cation exchange; Capillary zone electrophoresis; Ion mobility spectrometry; High-field asymmetric waveform ion mobility spectrometry
Sources: Crossref, ORCID
Added: December 16, 2019

2010 journal article

A multi-pronged search for a common structural motif in the secretion signal of Salmonella enterica serovar Typhimurium type III effector proteins

Molecular Biosystems, 6(12), 2448–2458.

By: G. Buchko*, G. Niemann*, E. Baker, M. Belov*, R. Smith*, F. Heffron*, J. Adkins*, J. McDermott*

Source: ORCID
Added: December 5, 2019

2010 journal article

An LC-IMS-MS Platform Providing Increased Dynamic Range for High-Throughput Proteomic Studies

Journal of Proteome Research, 9(2), 997–1006.

By: E. Baker, E. Livesay*, D. Orton*, R. Moore*, W. Danielson*, D. Prior*, Y. Ibrahim, B. LaMarche* ...

author keywords: Ion mobility spectrometry; IMS-MS; LC-IMS-MS; high-throughput RPLC
Source: ORCID
Added: December 5, 2019

2010 journal article

Characterization of an ion mobility-multiplexed collision-induced dissociation-tandem time-of-flight mass spectrometry approach

International Journal of Mass Spectrometry, 293(1-3), 34–44.

By: Y. Ibrahim, D. Prior*, E. Baker, R. Smith* & M. Belov*

author keywords: Ion mobility spectrometry; Multiplexed CID; Time-of-flight; Peptide identification; False discovery rate
Source: ORCID
Added: December 5, 2019

2010 journal article

Ion mobility separations in high throughput proteomics: A novel approach to protein detection and quantitation

Abstracts of Papers of the American Chemical Society, 240. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000208164705803&KeyUID=WOS:000208164705803

By: M. Belov, E. Baker, Y. Ibrahim, D. Prior, W. Danielson, R. Kurulugama, S. Prasad, A. Shah ...

Source: ORCID
Added: December 5, 2019

2010 journal article

Machine learning based prediction for peptide drift times in ion mobility spectrometry

Bioinformatics, 26(13), 1601–1607.

By: A. Shah*, K. Agarwal*, E. Baker, M. Singhal*, A. Mayampurath*, Y. Ibrahim, L. Kangas*, M. Monroe* ...

Source: ORCID
Added: December 5, 2019

2009 journal article

Aminoglycoside antibiotics: A-site specific binding to 16S

International Journal of Mass Spectrometry, 283(1-3), 105–111.

By: E. Baker, N. Dupuis* & M. Bowers*

author keywords: Ion mobility; 16S; Mass spectrometry
Source: ORCID
Added: December 5, 2019

2009 journal article

Biases in Ion Transmission Through an Electrospray Ionization-Mass Spectrometry Capillary Inlet

Journal of the American Society For Mass Spectrometry, 20(12), 2265–2272.

By: J. Page*, I. Marginean*, E. Baker, R. Kelly*, K. Tang* & R. Smith*

Source: ORCID
Added: December 5, 2019

2009 journal article

DNA Hairpin, Pseudoknot, and Cruciform Stability in a Solvent-Free Environment

Journal of Physical Chemistry B, 113(6), 1722–1727.

By: E. Baker, N. Dupuis* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2008 journal article

G-quadruplex DNA assemblies: Loop length, cation identity, and multimer formation

Journal of the American Chemical Society, 130(31), 10208–10216.

By: N. Smargiasso*, F. Rosu*, W. Hsia*, P. Colson*, E. Baker, M. Bowers*, E. De Pauw*, V. Gabelica*

Source: ORCID
Added: December 5, 2019

2008 journal article

High-resolution separations and improved ion production and transmission in metabolomics

Trac-Trends in Analytical Chemistry, 27(3), 205–214.

By: T. Metz*, J. Page*, E. Baker, K. Tang*, J. Ding*, Y. Shen*, R. Smith*

author keywords: electrospray ionization; ion mobility spectroscopy; liquid chromatography; mass spectrometry; metabolomics
Source: ORCID
Added: December 5, 2019

2008 journal article

Simultaneous fragmentation of multiple ions using IMS drift time dependent collision energies

Journal of the American Society For Mass Spectrometry, 19(3), 411–419.

By: E. Baker, K. Tang*, W. Danielson*, D. Prior* & R. Smith*

Source: ORCID
Added: December 5, 2019

2007 journal article

B-DNA helix stability in a solvent-free environment

Journal of the American Society For Mass Spectrometry, 18(7), 1188–1195.

By: E. Baker & M. Bowers*

Source: ORCID
Added: December 5, 2019

2007 journal article

Ion mobility spectrometry-mass spectrometry performance using electrodynamic ion funnels and elevated drift gas pressures

Journal of the American Society For Mass Spectrometry, 18(7), 1176–1187.

By: E. Baker, B. Clowers*, F. Li*, K. Tang*, A. Tolmachev*, D. Prior*, M. Belov*, R. Smith*

Source: ORCID
Added: December 5, 2019

2007 journal article

Optimization of algorithms for ion mobility calculations

Journal of Physical Chemistry a, 111(10), 2002–2010.

By: A. Shvartsburg*, S. Mashkevich*, E. Baker & R. Smith*

Source: ORCID
Added: December 5, 2019

2007 journal article

Stabilization and structure of telomeric and c-myc region intramolecular G-quadruplexes: The role of central cations and small planar ligands

Journal of the American Chemical Society, 129(4), 895–904.

By: V. Gabelica*, E. Baker, M. Teulade-Fichou*, E. De Pauw* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2006 journal article

ANYL 227-Exploring the conformational diversity of proteins and peptides using high-resolution FAIMS and IMS

Abstracts of Papers of the American Chemical Society, 232. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000207781601223&KeyUID=WOS:000207781601223

By: K. Tang, A. Shvartsburg, F. Li, Y. Ibrahim, D. Prior, M. Buschbach, E. Baker, R. Smith

Source: ORCID
Added: December 5, 2019

2006 journal article

Cyclo[n]pyrroles: Size and site-specific binding to G-quadruplexes

Journal of the American Chemical Society, 128(8), 2641–2648.

By: E. Baker, J. Lee*, J. Sessler* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2006 journal article

G-quadruplexes in telomeric repeats are conserved in a solvent-free environment

International Journal of Mass Spectrometry, 253(3), 225–237.

By: E. Baker, S. Bernstein*, V. Gabelica*, E. De Pauw* & M. Bowers*

author keywords: ion mobility; G-quadruplexes; DNA
Source: ORCID
Added: December 5, 2019

2006 journal article

Non-covalent complexes of biological interest: Nucleotide-drug interactions and peptide/protein self assembly

Abstracts of Papers of the American Chemical Society, 231. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000238125900429&KeyUID=WOS:000238125900429

By: M. Bowers, S. Bernstein, E. Baker, T. Wyttenbach, J. Shea & D. Teplow

Source: ORCID
Added: December 5, 2019

2006 journal article

PNA/dsDNA complexes: Site specific binding and dsDNA biosensor applications

Journal of the American Chemical Society, 128(26), 8484–8492.

By: E. Baker, J. Hong*, B. Gaylord*, G. Bazan* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2005 journal article

Probing shapes of bichromophoric metal-organic complexes using ion mobility mass spectrometry

Journal of the American Chemical Society, 127(51), 18222–18228.

By: E. Baker, J. Bushnell*, S. Wecksler*, M. Lim*, M. Manard*, N. Dupuis*, P. Ford*, M. Bowers*

Source: ORCID
Added: December 5, 2019

2005 journal article

Structural analysis of metal interactions with the dinucleotide duplex, dCG center dot dCG, using ion mobility mass spectrometry

Journal of Physical Chemistry B, 109(11), 4808–4810.

By: E. Baker, M. Manard*, J. Gidden* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2005 journal article

Structural characterization of G-quadruplexes in deoxyguanosine clusters using ion mobility mass spectrometry

Journal of the American Society For Mass Spectrometry, 16(7), 989–997.

By: E. Baker, S. Bernstein* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2005 journal article

Structural motifs of DNA complexes in the gas phase

International Journal of Mass Spectrometry, 240(3), 183–193.

By: J. Gidden*, E. Baker, A. Ferzoco* & M. Bowers*

author keywords: ion mobility; DNA; helix; conformations
Source: ORCID
Added: December 5, 2019

2005 journal article

Structure of hybrid polyhedral oligomeric silsesquioxane propyl methacrylate oligomers using ion mobility mass spectrometry and molecular mechanics

Chemistry of Materials, 17(10), 2537–2545.

By: S. Anderson*, E. Baker, C. Mitchell*, T. Haddad* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 journal article

Diastereomer assignment of an olefin-linked bis-paracyclophane by ion mobility mass spectrometry

Journal of the American Chemical Society, 126(20), 6255–6257.

By: E. Baker, J. Hong*, J. Gidden*, G. Bartholomew*, G. Bazan* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 journal article

Duplex formation and the onset of helicity in oligonucleotides.

Abstracts of Papers of the American Chemical Society, 227, U258. http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000223655701333&KeyUID=WOS:000223655701333

By: J. Gidden, E. Baker, A. Ferzoco & M. Bowers

Source: ORCID
Added: December 5, 2019

2004 journal article

Duplex formation and the onset of helicity in poly d(CG)(n) oligonucleotides in a solvent-free environment

Journal of the American Chemical Society, 126(46), 15132–15140.

By: J. Gidden*, A. Ferzoco, E. Baker & M. Bowers

Source: ORCID
Added: December 5, 2019

2004 journal article

Isomeric structural characterization of polyhedral oligomeric silsesquioxanes (POSS) with styryl and epoxy phenyl capping agents

Nano Letters, 4(5), 779–785.

By: E. Baker, J. Gidden*, S. Anderson*, T. Haddad* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 journal article

Microstructural and Conformational Studies of Polyether Copolymers

The International Journal of Mass Spectrometry, 238(3), 287–297.

By: A. Jackson, J. Scrivens, J. Williams, E. Baker, J. Gidden & M. Bowers

author keywords: oligomer; ion mobility; ESI-MS/MS
Sources: ORCID, Web Of Science
Added: December 5, 2019

2004 journal article

Sequence Dependent Conformations of Glycidyl Methacrylate/Butyl Methacrylate Copolymers in the Gas Phase

The International Journal of Mass Spectrometry, 238(3), 279–286.

By: E. Baker, J. Gidden, W. Simonsick, M. Grady & M. Bowers

author keywords: glycidyl methacrylate/butyl methacrylate; gas phase; MALDI; ion mobility
Sources: ORCID, Web Of Science
Added: December 5, 2019

2004 journal article

Sodium stabilization of dinucleotide multiplexes in the gas phase

Physical Chemistry Chemical Physics, 6(10), 2786–2795.

By: E. Baker, J. Gidden*, A. Ferzoco* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2004 chapter

The ion mobility mass spectrometry method and its application to duplex formation of oligonucleotides and aggregation of proteins

In Advances in Mass Spectrometry, Vol 16 (Vol. 16, pp. 189–200). http://gateway.webofknowledge.com/gateway/Gateway.cgi?GWVersion=2&SrcAuth=ORCID&SrcApp=OrcidOrg&DestLinkType=FullRecord&DestApp=WOS_CPL&KeyUT=WOS:000226631200011&KeyUID=WOS:000226631200011

By: T. Wyttenbach, E. Baker, S. Bernstein, A. Ferzoco, J. Gidden, D. Liu, M. Bowers

Source: ORCID
Added: December 5, 2019

2003 journal article

3-dimensional structural characterization of cationized polyhedral oligomeric silsesquioxanes (POSS) with styryl and phenylethyl capping agents

International Journal of Mass Spectrometry, 227(1), 205–216.

By: E. Baker, J. Gidden*, D. Fee*, P. Kemper*, S. Anderson* & M. Bowers*

Source: ORCID
Added: December 5, 2019

2003 journal article

Application of ion mobility to the gas-phase conformational analysis of polyhedral oligomeric silsesquioxanes (POSS)

International Journal of Mass Spectrometry, 222(1-3), 63–73.

author keywords: POSS; ion mobility; gas-phase conformational analysis
Source: ORCID
Added: December 5, 2019

Employment

Updated: October 21st, 2022 14:56

2022 - present

University of North Carolina at Chapel Hill Chapel Hill, NC, US
Associate Professor Chemistry

2018 - 2022

NC State University Raleigh, North Carolina, US
Associate Professor Chemistry

2006 - 2018

Pacific Northwest National Laboratory Richland, WA, US
Senior Research Scientist Biological Sciences Division

Education

Updated: July 18th, 2016 12:17

2001 - 2005

University of California Santa Barbara Santa Barbara, CA, US
Ph.D. in Chemistry Chemistry

1997 - 2001

Montana State University Bozeman Bozeman, MT, US
B.S. in Chemistry and minor in Mathematics Chemistry