Fern Jessica Barkalow

Works (5)

Updated: November 20th, 2025 13:33

2025 article

Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

Wiegers, T. C., Davis, A. P., Wiegers, J., Sciaky, D., Barkalow, F., Wyatt, B., … Mattingly, C. J. (2025, January 1). Database, Vol. 2025.

By: T. Wiegers n, A. Davis n, J. Wiegers n, D. Sciaky n, F. Barkalow n, B. Wyatt n, M. Strong n, R. McMorran n, S. Abrar n, C. Mattingly n 

MeSH headings : Toxicogenetics; Data Mining / methods; Data Curation / methods; Humans; Databases, Factual; Workflow; Databases, Genetic
topics (OpenAlex): Biomedical Text Mining and Ontologies; Genetics, Bioinformatics, and Biomedical Research; Bioinformatics and Genomic Networks; Semantic Web and Ontologies
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4. Quality Education (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: March 10, 2025

2025 article

Linking chemical data from the Comparative Toxicogenomics Database with adverse outcome pathways from the AOP-Wiki: a mechanistic data-oriented approach to help inform environmental health

Davis, A. P., Wiegers, T. C., Sciaky, D., Barkalow, F., Wyatt, B., Wiegers, J., … Mattingly, C. J. (2025, November 17). F1000Research.

By: A. Davis*, T. Wiegers*, D. Sciaky*, F. Barkalow*, B. Wyatt*, J. Wiegers*, R. McMorran*, S. Abrar* ...

topics (OpenAlex): Autism Spectrum Disorder Research; Health, Environment, Cognitive Aging; Click Chemistry and Applications
Sources: NC State University Libraries, NC State University Libraries
Added: November 19, 2025

2024 article

Comparative Toxicogenomics Database’s 20th anniversary: update 2025

Davis, A. P., Wiegers, T. C., Sciaky, D., Barkalow, F., Strong, M., Wyatt, B., … Mattingly, C. J. (2024, October 10). Nucleic Acids Research, Vol. 10.

By: A. Davis n, T. Wiegers n, D. Sciaky n, F. Barkalow n, M. Strong n, B. Wyatt n, J. Wiegers n, R. McMorran n, S. Abrar n, C. Mattingly n 

MeSH headings : Toxicogenetics; Humans; Software; Databases, Genetic; Anniversaries and Special Events; Databases, Factual; Data Curation
topics (OpenAlex): Biomedical Text Mining and Ontologies; Bioinformatics and Genomic Networks; Gene expression and cancer classification
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Sources: Web Of Science, NC State University Libraries
Added: October 21, 2024

2024 article

Transforming environmental health datasets from the comparative toxicogenomics database into chord diagrams to visualize molecular mechanisms

Wyatt, B., Davis, A. P., Wiegers, T. C., Wiegers, J., Abrar, S., Sciaky, D., … Mattingly, C. J. (2024, July 22). Frontiers in Toxicology, Vol. 6.

By: B. Wyatt n, A. Davis n, T. Wiegers n, J. Wiegers n, S. Abrar n, D. Sciaky n, F. Barkalow n, M. Strong n, C. Mattingly n 

author keywords: data visualization; chord diagram; r; molecular mechanisms; environmental health; database; tetramers
topics (OpenAlex): Bioinformatics and Genomic Networks; Computational Drug Discovery Methods; Gene expression and cancer classification
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Sources: Web Of Science, NC State University Libraries
Added: August 19, 2024

2023 article

CTD tetramers: a new online tool that computationally links curated chemicals, genes, phenotypes, and diseases to inform molecular mechanisms for environmental health

Davis, A. P., Wiegers, T. C., Wiegers, J., Wyatt, B., Johnson, R. J., Sciaky, D., … Mattingly, C. J. (2023, July 21). Toxicological Sciences, Vol. 195, pp. 155–168.

By: A. Davis n, T. Wiegers n, J. Wiegers n, B. Wyatt n, R. Johnson n, D. Sciaky n, F. Barkalow n, M. Strong n, A. Planchart n , C. Mattingly n 

author keywords: database tool; chemical-disease pathway; molecular mechanisms; environmental health; knowledge gaps; adverse outcome pathway
MeSH headings : Male; Humans; Toxicogenetics; Databases, Factual; Environmental Health; Phenotype; Environmental Exposure
topics (OpenAlex): Health, Environment, Cognitive Aging; Bioinformatics and Genomic Networks; Computational Drug Discovery Methods
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Sources: Web Of Science, NC State University Libraries
Added: April 1, 2024

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