Fernando Luis Barroso da Silva
Works (8)
Updated: April 11th, 2023 10:13
2023 journal article
Towards an optimal monoclonal antibody with higher binding affinity to the receptor-binding domain of SARS-CoV-2 spike proteins from different variants
COLLOIDS AND SURFACES B-BIOINTERFACES, 221.
author keywords: COVID-19; Molecular dynamics; Coarse -grain simulation; Constant -pH Monte Carlo; Multiscale protocol; Electrostatic interactions
www.ncbi.nlm.nih.gov (repository)
Source: Web Of Science
Added: December 19, 2022
2022 article
Differences between Omicron SARS-CoV-2 RBD and other variants in their ability to interact with cell receptors and monoclonal antibodies
Giron, C. C., Laaksonen, A., & Silva, F. L. (2022, June 27). JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS.
author keywords: Protein-protein interactions; host-pathogen interaction; ACE2 polymorphism; molecular recognition; antibody; development; binding affinities; Covid-19; Monte Carlo
Source: Web Of Science
Added: July 18, 2022
2022 journal article
Self-association features of NS1 proteins from different flaviviruses
VIRUS RESEARCH, 318.
author keywords: Protein -protein interaction; Free energy; Non-structural protein 1; pH; Monte Carlo simulations
Source: Web Of Science
Added: July 26, 2022
2021 journal article
How the Strain Origin of Zika Virus NS1 Protein Impacts Its Dynamics and Implications to Their Differential Virulence
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 61(3), 1516–1530.
Source: Web Of Science
Added: May 10, 2021
2020 journal article
Exploring the physicochemical and morphological properties of peptide‐hybridized dendrimers ( DendriPeps ) and their aggregates
Journal of Polymer Science, 58(16), 2234–2247.
author keywords: dendrimets; DendriPeps; molecular dynamics; PAMAM; reversible aggregation
Sources: Web Of Science, ORCID, Crossref
Added: July 27, 2020
2020 journal article
Identification of Electrostatic Epitopes in Flavivirus by Computer Simulations: The PROCEEDpKa Method
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 60(2), 944–963.
Source: Web Of Science
Added: April 20, 2020
2020 journal article
On the interactions of the receptor-binding domain of SARS-CoV-1 and SARS-CoV-2 spike proteins with monoclonal antibodies and the receptor ACE2
VIRUS RESEARCH, 285.
author keywords: Epitopes; Binding affinity; Antibody development; Host-pathogen interaction; Electrostatic interactions; Antigenic analysis; Computer simulation; pH effect; Coronavirus; SARS-CoV-2; ACE2; Protein-protein interaction
Source: Web Of Science
Added: July 6, 2020
2019 journal article
Coarse-grained dynamic RNA titration simulations
INTERFACE FOCUS, 9(3).
author keywords: RNA; titration; pH; coarse-grained model
Source: Web Of Science
Added: May 13, 2019
