Works (8)

Updated: July 5th, 2023 15:27

2023 journal article

Towards an optimal monoclonal antibody with higher binding affinity to the receptor-binding domain of SARS-CoV-2 spike proteins from different variants

COLLOIDS AND SURFACES B-BIOINTERFACES, 221.

co-author countries: Brazil 🇧🇷 China 🇨🇳 Italy 🇮🇹 Romania 🇷🇴 Sweden 🇸🇪 United States of America 🇺🇸
author keywords: COVID-19; Molecular dynamics; Coarse -grain simulation; Constant -pH Monte Carlo; Multiscale protocol; Electrostatic interactions
MeSH headings : Humans; Spike Glycoprotein, Coronavirus / genetics; SARS-CoV-2; COVID-19; Antibodies, Monoclonal; Edible Grain
Source: Web Of Science
Added: December 19, 2022

2022 article

Differences between Omicron SARS-CoV-2 RBD and other variants in their ability to interact with cell receptors and monoclonal antibodies

Giron, C. C., Laaksonen, A., & Silva, F. L. (2022, June 27). JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS.

co-author countries: Brazil 🇧🇷 China 🇨🇳 Italy 🇮🇹 Sweden 🇸🇪 United States of America 🇺🇸
author keywords: Protein-protein interactions; host-pathogen interaction; ACE2 polymorphism; molecular recognition; antibody; development; binding affinities; Covid-19; Monte Carlo
Source: Web Of Science
Added: July 18, 2022

2022 journal article

Self-association features of NS1 proteins from different flaviviruses

VIRUS RESEARCH, 318.

co-author countries: Brazil 🇧🇷 France 🇫🇷 United States of America 🇺🇸
author keywords: Protein -protein interaction; Free energy; Non-structural protein 1; pH; Monte Carlo simulations
MeSH headings : Flavivirus; Humans; Viral Nonstructural Proteins / metabolism; Virus Replication; West Nile virus; Zika Virus / metabolism; Zika Virus Infection
Source: Web Of Science
Added: July 26, 2022

2021 journal article

How the Strain Origin of Zika Virus NS1 Protein Impacts Its Dynamics and Implications to Their Differential Virulence

JOURNAL OF CHEMICAL INFORMATION AND MODELING, 61(3), 1516–1530.

co-author countries: Brazil 🇧🇷 France 🇫🇷 United States of America 🇺🇸
MeSH headings : Humans; Viral Nonstructural Proteins; Virulence; Zika Virus; Zika Virus Infection
Source: Web Of Science
Added: May 10, 2021

2020 journal article

Exploring the physicochemical and morphological properties of peptide‐hybridized dendrimers ( DendriPeps ) and their aggregates

Journal of Polymer Science, 58(16), 2234–2247.

co-author countries: Brazil 🇧🇷 United States of America 🇺🇸
author keywords: dendrimets; DendriPeps; molecular dynamics; PAMAM; reversible aggregation
Sources: Web Of Science, ORCID, Crossref
Added: July 27, 2020

2020 journal article

Identification of Electrostatic Epitopes in Flavivirus by Computer Simulations: The PROCEEDpKa Method

JOURNAL OF CHEMICAL INFORMATION AND MODELING, 60(2), 944–963.

co-author countries: Brazil 🇧🇷 France 🇫🇷 United States of America 🇺🇸
MeSH headings : Antibodies, Viral / chemistry; Antibodies, Viral / immunology; Epitopes / chemistry; Epitopes / immunology; Flavivirus / immunology; Models, Molecular; Monte Carlo Method; Protein Conformation; Static Electricity
Source: Web Of Science
Added: April 20, 2020

2020 journal article

On the interactions of the receptor-binding domain of SARS-CoV-1 and SARS-CoV-2 spike proteins with monoclonal antibodies and the receptor ACE2

VIRUS RESEARCH, 285.

co-author countries: Brazil 🇧🇷 China 🇨🇳 Sweden 🇸🇪 United States of America 🇺🇸
author keywords: Epitopes; Binding affinity; Antibody development; Host-pathogen interaction; Electrostatic interactions; Antigenic analysis; Computer simulation; pH effect; Coronavirus; SARS-CoV-2; ACE2; Protein-protein interaction
MeSH headings : Angiotensin-Converting Enzyme 2; Antibodies, Monoclonal / immunology; Antibodies, Monoclonal / metabolism; Antibodies, Viral / immunology; Antibodies, Viral / metabolism; Betacoronavirus / chemistry; Betacoronavirus / immunology; Computer Simulation; Epitope Mapping; Humans; Models, Molecular; Monte Carlo Method; Peptidyl-Dipeptidase A / chemistry; Peptidyl-Dipeptidase A / metabolism; Protein Binding; Protein Conformation; Protein Interaction Domains and Motifs; Protein Interaction Mapping; Receptors, Virus / chemistry; Receptors, Virus / metabolism; Severe acute respiratory syndrome-related coronavirus / chemistry; Severe acute respiratory syndrome-related coronavirus / immunology; SARS-CoV-2; Spike Glycoprotein, Coronavirus / chemistry; Spike Glycoprotein, Coronavirus / immunology; Spike Glycoprotein, Coronavirus / metabolism; Thermodynamics
Source: Web Of Science
Added: July 6, 2020

2019 journal article

Coarse-grained dynamic RNA titration simulations

INTERFACE FOCUS, 9(3).

co-author countries: Brazil 🇧🇷 France 🇫🇷 United States of America 🇺🇸
author keywords: RNA; titration; pH; coarse-grained model
Source: Web Of Science
Added: May 13, 2019

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