@article{madhuresh_nguyen_franzen_2023, title={The divergent pH dependence of substrate turnover in dehaloperoxidases A and B}, volume={238}, ISSN={["1873-3344"]}, DOI={10.1016/j.jinorgbio.2022.112029}, journal={JOURNAL OF INORGANIC BIOCHEMISTRY}, author={Madhuresh, Nikhila Kashyap Dhanvantari and Nguyen, Hilbert and Franzen, Stefan}, year={2023}, month={Jan} }
 @article{gao_aspnes_franzen_2022, title={Classical Model of Surface Enhanced Infrared Absorption (SEIRA) Spectroscopy}, volume={1}, ISSN={["1520-5215"]}, DOI={10.1021/acs.jpca.1c08463}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Gao, Yuan and Aspnes, D. E. and Franzen, Stefan}, year={2022}, month={Jan} }
 @article{thompson_shay_serrano_dumarieh_ghiladi_franzen_2021, title={A new inhibition mechanism in the multifunctional catalytic hemoglobin dehaloperoxidase as revealed by the DHP A(V59W) mutant: A spectroscopic and crystallographic study}, volume={25}, ISSN={["1099-1409"]}, DOI={10.1142/S1088424621500826}, number={7-8}, journal={JOURNAL OF PORPHYRINS AND PHTHALOCYANINES}, author={Thompson, Matthew K. and Shay, Madeline R. and Serrano, Vesna and Dumarieh, Rania and Ghiladi, Reza A. and Franzen, Stefan}, year={2021}, month={Jul}, pages={756–771} }
 @article{gao_aspnes_franzen_2020, title={Classical Correlation Model of Resonance Raman Spectroscopy}, volume={124}, ISSN={["1520-5215"]}, DOI={10.1021/acs.jpca.0c04401}, number={44}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Gao, Y. and Aspnes, D. E. and Franzen, S.}, year={2020}, month={Nov}, pages={9177–9186} }
 @article{sachet_aspnes_maria_franzen_2020, title={Critical Test of the Interaction of Surface Plasmon Resonances with Molecular Vibrational Transitions}, volume={124}, ISSN={["1520-5215"]}, DOI={10.1021/acs.jpca.9b10835}, number={9}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Sachet, Edward and Aspnes, D. E. and Maria, J-P and Franzen, Stefan}, year={2020}, month={Mar}, pages={1744–1753} }
 @misc{khamh_sachet_kelly_maria_franzen_2018, title={As good as gold and better: conducting metal oxide materials for mid-infrared plasmonic applications}, volume={6}, ISSN={["2050-7534"]}, DOI={10.1039/c7tc05760a}, number={31}, journal={JOURNAL OF MATERIALS CHEMISTRY C}, author={Khamh, Hniang and Sachet, Edward and Kelly, Kyle and Maria, Jon-Paul and Franzen, Stefan}, year={2018}, month={Aug}, pages={8326–8342} }
 @article{zhao_xue_gudanis_gracz_findenegg_gdaniec_franzen_2018, title={Dynamics of dehaloperoxidase-hemoglobin A derived from NMR relaxation spectroscopy and molecular dynamics simulation}, volume={181}, ISSN={["1873-3344"]}, DOI={10.1016/j.jinorgbio.2018.01.006}, journal={JOURNAL OF INORGANIC BIOCHEMISTRY}, author={Zhao, Jing and Xue, Mengjun and Gudanis, Dorota and Gracz, Hanna and Findenegg, Gerhard H. and Gdaniec, Zofia and Franzen, Stefan}, year={2018}, month={Apr}, pages={65–73} }
 @article{wu_zhao_franzen_tsai_2017, title={Bindings of NO, CO, and O-2 to multifunctional globin type dehaloperoxidase follow the 'sliding scale rule'}, volume={474}, journal={Biochemical Journal (London, England : 1984)}, author={Wu, G. and Zhao, J. and Franzen, S. and Tsai, A. L.}, year={2017}, pages={3485–3498} }
 @article{wu_zhao_franzen_tsai_2017, title={Bindings of NO, CO, and O2 to multifunctional globin type dehaloperoxidase follow the ‘sliding scale rule’}, volume={474}, ISSN={0264-6021 1470-8728}, url={http://dx.doi.org/10.1042/BCJ20170515}, DOI={10.1042/BCJ20170515}, abstractNote={Dehaloperoxidase–hemoglobin (DHP), a multifunctional globin protein, not only functions as an oxygen carrier as typical globins such as myoglobin and hemoglobin, but also as a peroxidase, a mono- and dioxygenase, peroxygenase, and an oxidase. Kinetics of DHP binding to NO, CO, and O2 were characterized for wild-type DHP A and B and the H55D and H55V DHP A mutants using stopped-flow methods. All three gaseous ligands bind to DHP significantly more weakly than sperm whale myoglobin (SWMb). Both CO and NO bind to DHP in a one-step process to form a stable six-coordinate complex. Multiple-step NO binding is not observed in DHP, which is similar to observations in SWMb, but in contrast with many heme sensor proteins. The weak affinity of DHP for O2 is mainly due to a fast O2 dissociation rate, in accordance with a longer εN–Fe distance between the heme iron and distal histidine in DHP than that in Mb, and an open-distal pocket that permits ligand escape. Binding affinities in DHP show the same 3–4 orders separation between the pairs NO/CO and CO/O2, consistent with the ‘sliding scale rule’ hypothesis. Strong gaseous ligand discrimination by DHP is very different from that observed in typical peroxidases, which show poor gaseous ligand selectivity, correlating with a neutral proximal imidazole ligand rather than an imidazolate. The present study provides useful insights into the rationale for DHP to function both as mono-oxygenase and oxidase, and is the first example of a globin peroxidase shown to follow the ‘sliding scale rule’ hypothesis in gaseous ligand discrimination.}, number={20}, journal={Biochemical Journal}, publisher={Portland Press Ltd.}, author={Wu, Gang and Zhao, Jing and Franzen, Stefan and Tsai, Ah-Lim}, year={2017}, month={Oct}, pages={3485–3498} }
 @article{mccombs_moreno-chicano_carey_franzen_hough_ghiladi_2017, title={Interaction of Azole-Based Environmental Pollutants with the Coelomic Hemoglobin from Amphitrite ornata: A Molecular Basis for Toxicity}, volume={56}, ISSN={0006-2960 1520-4995}, url={http://dx.doi.org/10.1021/acs.biochem.7b00041}, DOI={10.1021/acs.biochem.7b00041}, number={17}, journal={Biochemistry}, publisher={American Chemical Society (ACS)}, author={McCombs, Nikolette L. and Moreno-Chicano, Tadeo and Carey, Leiah M. and Franzen, Stefan and Hough, Michael A. and Ghiladi, Reza A.}, year={2017}, month={Apr}, pages={2294–2303} }
 @article{thompson_lamb_delley_franzen_2017, title={Vibrational spectroscopy of the double complex salt Pd(NH3)4(ReO4)2, a bimetallic catalyst precursor}, volume={173}, ISSN={1386-1425}, url={http://dx.doi.org/10.1016/J.SAA.2016.10.011}, DOI={10.1016/J.SAA.2016.10.011}, journal={Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy}, publisher={Elsevier BV}, author={Thompson, Simon T. and Lamb, H. Henry and Delley, Bernard and Franzen, Stefan}, year={2017}, month={Feb}, pages={618–624} }
 @article{franzen_ghiladi_lebioda_dawson_2016, title={Multi-functional hemoglobin dehaloperoxidases}, number={4}, journal={Heme peroxidases}, author={Franzen, S. and Ghiladi, R. A. and Lebioda, L. and Dawson, J.}, year={2016}, pages={218–244} }
 @article{kang_losego_sachet_maria_franzen_2016, title={Near-Infrared Optical Extinction of Indium Tin Oxide Structures Prepared by Nanosphere Lithography}, volume={3}, ISSN={["2330-4022"]}, DOI={10.1021/acsphotonics.6b00649}, number={10}, journal={ACS PHOTONICS}, author={Kang, Misun and Losego, Mark and Sachet, Edward and Maria, Jon-Paul and Franzen, Stefan}, year={2016}, month={Oct}, pages={1993–1999} }
 @article{zhang_santos_zhou_liang_wang_wu_franzen_2016, title={Steered molecular dynamics study of inhibitor binding in the internal binding site in dehaloperoxidase-hemoglobin}, volume={211}, ISSN={["1873-4200"]}, DOI={10.1016/j.bpc.2016.01.003}, journal={BIOPHYSICAL CHEMISTRY}, author={Zhang, Zhisen and Santos, Andrew P. and Zhou, Qing and Liang, Lijun and Wang, Qi and Wu, Tao and Franzen, Stefan}, year={2016}, month={Apr}, pages={28–38} }
 @article{franzen_cochran_weng_bartolotti_delley_2016, title={The quadrapolar character of the Markovnikov reaction transition state}, volume={464}, ISSN={["1873-4421"]}, DOI={10.1016/j.chemphys.2015.11.001}, journal={CHEMICAL PHYSICS}, author={Franzen, Stefan and Cochran, Kristin H. and Weng, James and Bartolotti, Libero and Delley, Bernard}, year={2016}, month={Jan}, pages={46–54} }
 @article{burns_huang_weare_bartolotti_wang_yao_li_franzen_2015, title={Aerobic oxidation of beta-isophorone by tetraphenylporphYrin catalysts in pyridine solution}, volume={410}, ISSN={["1873-314X"]}, DOI={10.1016/j.molcata.2015.09.015}, journal={JOURNAL OF MOLECULAR CATALYSIS A-CHEMICAL}, author={Burns, Eric and Huang, Tao and Weare, Walter W. and Bartolotti, Libero and Wang, Xinyu and Yao, Jia and Li, Haoran and Franzen, Stefan}, year={2015}, month={Dec}, pages={110–120} }
 @article{zhao_lu_franzen_2015, title={Distinct Enzyme-Substrate Interactions Revealed by Two Dimensional Kinetic Comparison between Dehaloperoxidase-Hemoglobin and Horseradish Peroxidase}, volume={119}, ISSN={["1520-6106"]}, DOI={10.1021/acs.jpcb.5b07126}, number={40}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Zhao, Jing and Lu, Chang and Franzen, Stefan}, year={2015}, month={Oct}, pages={12828–12837} }
 @article{sachet_shelton_harris_gaddy_irving_curtarolo_donovan_hopkins_sharma_sharma_et al._2015, title={Dysprosium-doped cadmium oxide as a gateway material for mid-infrared plasmonics}, volume={14}, ISSN={1476-1122 1476-4660}, url={http://dx.doi.org/10.1038/NMAT4203}, DOI={10.1038/NMAT4203}, number={4}, journal={Nature Materials}, publisher={Springer Science and Business Media LLC}, author={Sachet, Edward and Shelton, Christopher T. and Harris, Joshua S. and Gaddy, Benjamin E. and Irving, Douglas L. and Curtarolo, Stefano and Donovan, Brian F. and Hopkins, Patrick E. and Sharma, Peter A. and Sharma, Ana Lima and et al.}, year={2015}, month={Feb}, pages={414–420} }
 @article{zhao_moretto_le_franzen_2015, title={Measurement of Internal Substrate Binding in Dehaloperoxidase-Hemoglobin by Competition with the Heme-Fluoride Binding Equilibrium}, volume={119}, ISSN={["1520-5207"]}, DOI={10.1021/jp512996v}, number={7}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Zhao, Jing and Moretto, Justin and Le, Peter and Franzen, Stefan}, year={2015}, month={Feb}, pages={2827–2838} }
 @article{zhao_serrano_franzen_2014, title={A Model for the Flexibility of the Distal Histidine in Dehaloperoxidase-Hemoglobin A Based on X-ray Crystal Structures of the Carbon Monoxide Adduct}, volume={53}, ISSN={["0006-2960"]}, DOI={10.1021/bi5001905}, number={15}, journal={BIOCHEMISTRY}, author={Zhao, Junjie and Serrano, Vesna and Franzen, Stefan}, year={2014}, month={Apr}, pages={2474–2482} }
 @article{guo_franzen_ye_gu_yu_2014, title={Controlling enantioselectivity of esterase in asymmetric hydrolysis of aryl prochiral diesters by introducing aromatic interactions}, volume={111}, ISSN={0006-3592}, url={http://dx.doi.org/10.1002/BIT.25249}, DOI={10.1002/BIT.25249}, number={9}, journal={Biotechnology and Bioengineering}, publisher={Wiley}, author={Guo, Fei and Franzen, Stefan and Ye, Lidan and Gu, Jiali and Yu, Hongwei}, year={2014}, month={Apr}, pages={1729–1739} }
 @article{le_zhao_franzen_2014, title={Correlation of Heme Binding Affinity and Enzyme Kinetics of Dehaloperoxidase}, volume={53}, ISSN={["0006-2960"]}, DOI={10.1021/bi5005975}, number={44}, journal={BIOCHEMISTRY}, author={Le, Peter and Zhao, Jing and Franzen, Stefan}, year={2014}, month={Nov}, pages={6863–6877} }
 @article{franzen_zhao_gracz_2014, title={Dynamics of Multifunctional Dehaloperoxidase Hemoglobin}, volume={106}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/J.BPJ.2013.11.3665}, DOI={10.1016/J.BPJ.2013.11.3665}, number={2}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Franzen, Stefan and Zhao, Jing and Gracz, Hanna}, year={2014}, month={Jan}, pages={662a} }
 @article{nowak-karnowska_chebib_milecki_franzen_skalski_2014, title={Highly Efficient Fluorescent Interstrand Photo-crosslinking of DNA Duplexes Labeled with 5-Fluoro-4-thio-2 '-O-methyluridine}, volume={15}, ISSN={["1439-7633"]}, DOI={10.1002/cbic.201402182}, number={14}, journal={CHEMBIOCHEM}, author={Nowak-Karnowska, Joanna and Chebib, Ziad and Milecki, Jan and Franzen, Stefan and Skalski, Bohdan}, year={2014}, month={Sep}, pages={2045–2049} }
 @article{barrios_d’antonio_mccombs_zhao_franzen_schmidt_sombers_ghiladi_2014, title={Peroxygenase and Oxidase Activities of Dehaloperoxidase-Hemoglobin from Amphitrite ornata}, volume={136}, ISSN={0002-7863 1520-5126}, url={http://dx.doi.org/10.1021/ja500293c}, DOI={10.1021/ja500293c}, number={22}, journal={Journal of the American Chemical Society}, publisher={American Chemical Society (ACS)}, author={Barrios, David A. and D’Antonio, Jennifer and McCombs, Nikolette L. and Zhao, Jing and Franzen, Stefan and Schmidt, Andreas C. and Sombers, Leslie A. and Ghiladi, Reza A.}, year={2014}, month={May}, pages={7914–7925} }
 @article{komodzinski_lepczynska_gdaniec_bartolotti_delley_franzen_skalski_2014, title={Photochemistry of 6-amino-2-azido, 2-amino-6-azido and 2,6-diazido analogues of purine ribonucleosides in aqueous solutions}, volume={13}, ISSN={["1474-9092"]}, DOI={10.1039/c3pp50385b}, number={3}, journal={PHOTOCHEMICAL & PHOTOBIOLOGICAL SCIENCES}, author={Komodzinski, Krzysztof and Lepczynska, Jolanta and Gdaniec, Zofia and Bartolotti, Libero and Delley, Bernard and Franzen, Stefan and Skalski, Bohdan}, year={2014}, pages={563–573} }
 @article{zhao_xue_gracz_franzen_2014, title={Self-Assembley of Dehaloperoxidase-Hemoglobin Probed by Backbone Dynamics using NMR Relaxation Experiments and Molecular Dynamics Simulation}, volume={106}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/J.BPJ.2013.11.2638}, DOI={10.1016/J.BPJ.2013.11.2638}, number={2}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Zhao, Jing and Xue, Mengjun and Gracz, Hanna and Franzen, Stefan}, year={2014}, month={Jan}, pages={466a} }
 @article{franzen_skalski_bartolotti_delley_2014, title={The coupling of tautomerization to hydration in the transition state on the pyrimidine photohydration reaction path}, volume={16}, ISSN={["1463-9084"]}, DOI={10.1039/c4cp02160f}, number={37}, journal={PHYSICAL CHEMISTRY CHEMICAL PHYSICS}, author={Franzen, S. and Skalski, B. and Bartolotti, L. and Delley, B.}, year={2014}, pages={20164–20174} }
 @article{schkolnik_utesch_zhao_jiang_thompson_mroginski_hildebrandt_franzen_2013, title={Catalytic efficiency of dehaloperoxidase A is controlled by electrostatics - application of the vibrational Stark effect to understand enzyme kinetics}, volume={430}, ISSN={["1090-2104"]}, DOI={10.1016/j.bbrc.2012.12.047}, number={3}, journal={BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS}, author={Schkolnik, Gal and Utesch, Tillmann and Zhao, Junjie and Jiang, Shu and Thompson, Matthew K. and Mroginski, Maria-Andrea and Hildebrandt, Peter and Franzen, Stefan}, year={2013}, month={Jan}, pages={1011–1015} }
 @article{franzen_2013, title={Comment on 'Cooperativity between two selected RNA Pdases in the synthesis of Pd nanoparticles' by J. L. Rouge et al., J. Mater. Chem., 2010, 20, 8394-8398}, volume={1}, ISSN={["2050-7518"]}, DOI={10.1039/c3tb20820f}, number={45}, journal={JOURNAL OF MATERIALS CHEMISTRY B}, author={Franzen, Stefan}, year={2013}, pages={6339–6341} }
 @article{chung_leonard_altoe_aloni_de yoreo_franzen_2013, title={Crystals: The Formation of Pd Nanocrystals from Pd2(dba)3Microcrystals (Part. Part. Syst. Charact. 3/2013)}, volume={30}, ISSN={0934-0866}, url={http://dx.doi.org/10.1002/PPSC.201370010}, DOI={10.1002/PPSC.201370010}, number={3}, journal={Particle & Particle Systems Characterization}, publisher={Wiley}, author={Chung, Sungwook and Leonard, Donovan N. and Altoe, Virginia and Aloni, Shaul and De Yoreo, James J. and Franzen, Stefan}, year={2013}, month={Mar}, pages={298–298} }
 @article{zhao_srajer_franzen_2013, title={Functional Consequences of the Open Distal Pocket of Dehaloperoxidase-Hemoglobin Observed by Time-Resolved X-ray Crystallography}, volume={52}, ISSN={["0006-2960"]}, DOI={10.1021/bi401118q}, number={45}, journal={BIOCHEMISTRY}, author={Zhao, Junjie and Srajer, Vukica and Franzen, Stefan}, year={2013}, month={Nov}, pages={7943–7950} }
 @article{zhao_franzen_2013, title={Kinetic Study of the Inhibition Mechanism of Dehaloperoxidase-Hemoglobin A by 4-Bromophenol}, volume={117}, ISSN={["1520-6106"]}, DOI={10.1021/jp3116353}, number={28}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Zhao, Jing and Franzen, Stefan}, year={2013}, month={Jul}, pages={8301–8309} }
 @article{sachet_losego_guske_franzen_maria_2013, title={Mid-infrared surface plasmon resonance in zinc oxide semiconductor thin films}, volume={102}, ISSN={0003-6951 1077-3118}, url={http://dx.doi.org/10.1063/1.4791700}, DOI={10.1063/1.4791700}, number={5}, journal={Applied Physics Letters}, publisher={AIP Publishing}, author={Sachet, Edward and Losego, Mark D. and Guske, Joshua and Franzen, Stefan and Maria, Jon-Paul}, year={2013}, month={Feb}, pages={051111} }
 @article{plummer_thompson_franzen_2013, title={Role of Polarity of the Distal Pocket in the Control of Inhibitor Binding in Dehaloperoxidase-Hemoglobin}, volume={52}, ISSN={["0006-2960"]}, DOI={10.1021/bi301509r}, number={13}, journal={BIOCHEMISTRY}, author={Plummer, Ashlee and Thompson, Matthew K. and Franzen, Stefan}, year={2013}, month={Apr}, pages={2218–2227} }
 @article{zhao_serrano_zhao_le_franzen_2013, title={Structural and Kinetic Study of an Internal Substrate Binding Site in Dehaloperoxidase-Hemoglobin A from Amphitrite ornata}, volume={52}, ISSN={["0006-2960"]}, DOI={10.1021/bi301307f}, number={14}, journal={BIOCHEMISTRY}, author={Zhao, Jing and Serrano, Vesna and Zhao, Junjie and Le, Peter and Franzen, Stefan}, year={2013}, month={Apr}, pages={2427–2439} }
 @article{chung_leonard_altoe_aloni_de yoreo_franzen_2013, title={The Formation of Pd Nanocrystals from Pd2(dba)3Microcrystals}, volume={30}, ISSN={0934-0866}, url={http://dx.doi.org/10.1002/ppsc.201200114}, DOI={10.1002/ppsc.201200114}, number={3}, journal={Particle & Particle Systems Characterization}, publisher={Wiley}, author={Chung, Sungwook and Leonard, Donovan N. and Altoe, Virginia and Aloni, Shaul and De Yoreo, James J. and Franzen, Stefan}, year={2013}, month={Feb}, pages={280–286} }
 @article{zhao_zhao_franzen_2013, title={The Regulatory Implications of Hydroquinone for the Multifunctional Enzyme Dehaloperoxidase-Hemoglobin from Amphitrite ornata}, volume={117}, ISSN={["1520-6106"]}, DOI={10.1021/jp407663n}, number={47}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Zhao, Jing and Zhao, Junjie and Franzen, Stefan}, year={2013}, month={Nov}, pages={14615–14624} }
 @article{jiang_wright_swartz_franzen_2013, title={The role of T56 in controlling the flexibility of the distal histidine in dehaloperoxidase-hemoglobin from Amphitrite ornata}, volume={1834}, ISSN={["1878-1454"]}, DOI={10.1016/j.bbapap.2013.06.005}, number={10}, journal={BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS}, author={Jiang, Shu and Wright, Iain and Swartz, Paul and Franzen, Stefan}, year={2013}, month={Oct}, pages={2020–2029} }
 @article{franzen_brown_gaff_delley_2012, title={A Resonance Raman Enhancement Mechanism for Axial Vibrational Modes in the Pyridine Adduct of Myoglobin Proximal Cavity Mutant (H93G)}, volume={116}, ISSN={1520-6106 1520-5207}, url={http://dx.doi.org/10.1021/jp302049p}, DOI={10.1021/jp302049p}, number={35}, journal={The Journal of Physical Chemistry B}, publisher={American Chemical Society (ACS)}, author={Franzen, Stefan and Brown, Derek and Gaff, John and Delley, B.}, year={2012}, month={Jun}, pages={10514–10521} }
 @article{guske_brown_welsh_franzen_2012, title={Infrared surface plasmon resonance of AZO-Ag-AZO sandwich thin films}, volume={20}, ISSN={["1094-4087"]}, DOI={10.1364/oe.20.023215}, number={21}, journal={OPTICS EXPRESS}, author={Guske, Joshua T. and Brown, Jeff and Welsh, Alex and Franzen, Stefan}, year={2012}, month={Oct}, pages={23215–23226} }
 @article{franzen_sasan_sturgeon_lyon_battenburg_gracz_dumariah_ghiladi_2012, title={Nonphotochemical Base-Catalyzed Hydroxylation of 2,6-Dichloroquinone by H2O2Occurs by a Radical Mechanism}, volume={116}, ISSN={1520-6106 1520-5207}, url={http://dx.doi.org/10.1021/jp208536x}, DOI={10.1021/jp208536x}, number={5}, journal={The Journal of Physical Chemistry B}, publisher={American Chemical Society (ACS)}, author={Franzen, Stefan and Sasan, Koroush and Sturgeon, Bradley E. and Lyon, Blake J. and Battenburg, Benjamin J. and Gracz, Hanna and Dumariah, Rania and Ghiladi, Reza}, year={2012}, month={Jan}, pages={1666–1676} }
 @article{lepczynska_komodzinski_milecki_kierzek_gdaniec_franzen_skalski_2012, title={Photoaddition of 5-Bromouracil to Uracil in Oligonucleotides Leading to 5,5 '-Bipyrimidine-Type Adducts: Mechanism of the Photoreaction}, volume={77}, ISSN={["1520-6904"]}, DOI={10.1021/jo3021067}, number={24}, journal={JOURNAL OF ORGANIC CHEMISTRY}, author={Lepczynska, Jolanta and Komodzinski, Krzysztof and Milecki, Jan and Kierzek, Ryszard and Gdaniec, Zofia and Franzen, Stefan and Skalski, Bohdan}, year={2012}, month={Dec}, pages={11362–11367} }
 @article{gaff_franzen_2012, title={Resonance Raman enhancement of pyridine on Ag clusters}, volume={397}, ISSN={0301-0104}, url={http://dx.doi.org/10.1016/j.chemphys.2011.12.005}, DOI={10.1016/j.chemphys.2011.12.005}, number={1}, journal={Chemical Physics}, publisher={Elsevier BV}, author={Gaff, John and Franzen, Stefan}, year={2012}, month={Mar}, pages={34–41} }
 @article{zhao_rowe_franzen_he_franzen_2012, title={Study of the electrostatic effects of mutations on the surface of dehaloperoxidase-hemoglobin A}, volume={420}, ISSN={["0006-291X"]}, DOI={10.1016/j.bbrc.2012.03.053}, number={4}, journal={BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS}, author={Zhao, Junjie and Rowe, Jennifer and Franzen, Jocelyn and He, Chi and Franzen, Stefan}, year={2012}, month={Apr}, pages={733–737} }
 @article{zhao_de serrano_dumarieh_thompson_ghiladi_franzen_2012, title={The Role of the Distal Histidine in H2O2 Activation and Heme Protection in both Peroxidase and Globin Functions}, volume={116}, ISSN={1520-6106 1520-5207}, url={http://dx.doi.org/10.1021/jp300014b}, DOI={10.1021/jp300014b}, number={40}, journal={The Journal of Physical Chemistry B}, publisher={American Chemical Society (ACS)}, author={Zhao, Junjie and de Serrano, Vesna and Dumarieh, Rania and Thompson, Matt and Ghiladi, Reza A. and Franzen, Stefan}, year={2012}, month={Sep}, pages={12065–12077} }
 @article{franzen_thompson_ghiladi_2012, title={The dehaloperoxidase paradox}, volume={1824}, ISSN={1570-9639}, url={http://dx.doi.org/10.1016/j.bbapap.2011.12.008}, DOI={10.1016/j.bbapap.2011.12.008}, number={4}, journal={Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics}, publisher={Elsevier BV}, author={Franzen, Stefan and Thompson, Matthew K. and Ghiladi, Reza A.}, year={2012}, month={Apr}, pages={578–588} }
 @article{edward l. d'antonio_bowden_franzen_2012, title={Thin-layer spectroelectrochemistry of the Fe(III)/Fe(II) redox reaction of dehaloperoxidase-hemoglobin}, volume={668}, ISSN={["1873-2569"]}, DOI={10.1016/j.jelechem.2011.12.015}, journal={JOURNAL OF ELECTROANALYTICAL CHEMISTRY}, author={Edward L. D'Antonio and Bowden, Edmond F. and Franzen, Stefan}, year={2012}, month={Mar}, pages={37–43} }
 @article{schkolnik_salewski_millo_zebger_franzen_hildebrandt_2012, title={Vibrational Stark Effect of the Electric-Field Reporter 4-Mercaptobenzonitrile as a Tool for Investigating Electrostatics at Electrode/SAM/Solution Interfaces}, volume={13}, ISSN={["1422-0067"]}, DOI={10.3390/ijms13067466}, number={6}, journal={INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES}, author={Schkolnik, Gal and Salewski, Johannes and Millo, Diego and Zebger, Ingo and Franzen, Stefan and Hildebrandt, Peter}, year={2012}, month={Jun}, pages={7466–7482} }
 @article{milecki_nowak_skalski_franzen_2011, title={5-Fluoro-4-thiouridine phosphoramidite: New synthon for introducing photoaffinity label into oligodeovnucleotides}, volume={19}, ISSN={["0968-0896"]}, DOI={10.1016/j.bmc.2011.08.035}, number={20}, journal={BIOORGANIC & MEDICINAL CHEMISTRY}, author={Milecki, Jan and Nowak, Joanna and Skalski, Bohdan and Franzen, Stefan}, year={2011}, month={Oct}, pages={6098–6106} }
 @misc{franzen_2011, title={A comparison of peptide and folate receptor targeting of cancer cells: from single agent to nanoparticle}, volume={8}, ISSN={["1744-7593"]}, DOI={10.1517/17425247.2011.554816}, number={3}, journal={EXPERT OPINION ON DRUG DELIVERY}, author={Franzen, Stefan}, year={2011}, month={Mar}, pages={281–298} }
 @article{franzen_leonard_2011, title={Analysis of RNA-Mediated Materials Synthesis Using Magnetic Selection}, volume={115}, ISSN={["1932-7447"]}, DOI={10.1021/jp108689v}, number={19}, journal={JOURNAL OF PHYSICAL CHEMISTRY C}, author={Franzen, Stefan and Leonard, Donovan N.}, year={2011}, month={May}, pages={9335–9343} }
 @article{losego_guske_efremenko_maria_franzen_2011, title={Characterizing the Molecular Order of Phosphonic Acid Self-Assembled Monolayers on Indium Tin Oxide Surfaces}, volume={27}, ISSN={["0743-7463"]}, DOI={10.1021/la201161q}, number={19}, journal={LANGMUIR}, author={Losego, Mark D. and Guske, Joshua T. and Efremenko, Alina and Maria, Jon-Paul and Franzen, Stefan}, year={2011}, month={Oct}, pages={11883–11888} }
 @article{thompson_franzen_ghiladi_reeder_svistunenko_2011, title={Decay of Compound ES in Dehaloperoxidase-Hemoglobin}, volume={100}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2010.12.1275}, DOI={10.1016/j.bpj.2010.12.1275}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Thompson, Matthew K. and Franzen, Stefan and Ghiladi, Reza A. and Reeder, Brandon J. and Svistunenko, Dimitri A.}, year={2011}, month={Feb}, pages={194a} }
 @article{nicoletti_thompson_franzen_smulevich_2011, title={Degradation of sulfide by dehaloperoxidase-hemoglobin from Amphitrite ornata}, volume={16}, ISSN={["0949-8257"]}, DOI={10.1007/s00775-011-0762-2}, number={4}, journal={JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY}, author={Nicoletti, Francesco P. and Thompson, Matthew K. and Franzen, Stefan and Smulevich, Giulietta}, year={2011}, month={Apr}, pages={611–619} }
 @article{thompson_franzen_davis_oliver_krueger_2011, title={Dehaloperoxidase-Hemoglobin from Amphitrite ornata Is Primarily a Monomer in Solution}, volume={115}, ISSN={["1520-6106"]}, DOI={10.1021/jp201156r}, number={14}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Thompson, Matthew K. and Franzen, Stefan and Davis, Michael F. and Oliver, Ryan C. and Krueger, Joanna K.}, year={2011}, month={Apr}, pages={4266–4272} }
 @article{franzen_2011, title={Determination of the Solubility Limit of Tris(dibenzylideneacetone) dipalladium(0) in Tetrahydrofuran/Water Mixtures}, volume={88}, ISSN={["1938-1328"]}, DOI={10.1021/ed100123d}, number={5}, journal={JOURNAL OF CHEMICAL EDUCATION}, author={Franzen, Stefan}, year={2011}, month={May}, pages={619–623} }
 @article{thompson_franzen_2011, title={Distal Histidine Flexibility as the Key to the Reactivity of Dehaloperoxidase-Hemoglobin}, volume={100}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2010.12.1426}, DOI={10.1016/j.bpj.2010.12.1426}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Thompson, Matt and Franzen, Stefan}, year={2011}, month={Feb}, pages={222a} }
 @article{zhao_de serrano_dumarieh_thompson_franzen_2011, title={Effect of H55D Mutation on Kinetics and Structure of Dehaloperoxidase-Hemoglobin A}, volume={100}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2010.12.1421}, DOI={10.1016/j.bpj.2010.12.1421}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Zhao, Junjie and de Serrano, Vesna and Dumarieh, Rania and Thompson, Matt and Franzen, Stefan}, year={2011}, month={Feb}, pages={221a} }
 @article{d’antonio_d’antonio_de serrano_gracz_thompson_ghiladi_bowden_franzen_2011, title={Functional Consequences of the Creation of an Asp-His-Fe Triad in a 3/3 Globin}, volume={50}, ISSN={0006-2960 1520-4995}, url={http://dx.doi.org/10.1021/bi201368u}, DOI={10.1021/bi201368u}, number={44}, journal={Biochemistry}, publisher={American Chemical Society (ACS)}, author={D’Antonio, Edward L. and D’Antonio, Jennifer and de Serrano, Vesna and Gracz, Hanna and Thompson, Matthew K. and Ghiladi, Reza A. and Bowden, Edmond F. and Franzen, Stefan}, year={2011}, month={Nov}, pages={9664–9680} }
 @article{plummer_thompson_franzen_2011, title={Making Substrates Out of Inhibitors: Distal Cavity Mutations in Dehaloperoxidase from Amphitrite Ornata}, volume={100}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2010.12.1424}, DOI={10.1016/j.bpj.2010.12.1424}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Plummer, Ashlee M. and Thompson, Matthew K. and Franzen, Stefan}, year={2011}, month={Feb}, pages={222a} }
 @article{wang_lockney_goshe_franzen_2011, title={Mass Spectrometric Detection of Targeting Peptide Bioconjugation to Red clover necrotic mosaic virus}, volume={22}, ISSN={["1520-4812"]}, DOI={10.1021/bc2001769}, number={10}, journal={BIOCONJUGATE CHEMISTRY}, author={Wang, Ruqi and Lockney, Dustin M. and Goshe, Michael B. and Franzen, Stefan}, year={2011}, month={Oct}, pages={1970–1982} }
 @article{sasan_franzen_2011, title={Molecular Activation by Peroxidases}, volume={100}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2010.12.1418}, DOI={10.1016/j.bpj.2010.12.1418}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Sasan, Koroush and Franzen, Stefan}, year={2011}, month={Feb}, pages={221a} }
 @article{jiang_franzen_2011, title={Mutagenesis Study on the Conformation of Distal Histidine in Dehaloperoxidase-Hemoglobin}, volume={100}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2010.12.1420}, DOI={10.1016/j.bpj.2010.12.1420}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Jiang, Shu and Franzen, Stefan}, year={2011}, month={Feb}, pages={221a} }
 @article{szatkowski_thompson_kaminski_franzen_dybala-defratyka_2011, title={Oxidative dechlorination of halogenated phenols catalyzed by two distinct enzymes: Horseradish peroxidase and dehaloperoxidase}, volume={505}, ISSN={["1096-0384"]}, DOI={10.1016/j.abb.2010.09.018}, number={1}, journal={ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS}, author={Szatkowski, Lukasz and Thompson, Matthew K. and Kaminski, Rafal and Franzen, Stefan and Dybala-Defratyka, Agnieszka}, year={2011}, month={Jan}, pages={22–32} }
 @article{sturgeon_battenburg_lyon_franzen_2011, title={Revisiting the Peroxidase Oxidation of 2,4,6-Trihalophenols: ESR Detection of Radical Intermediates}, volume={24}, ISSN={["1520-5010"]}, DOI={10.1021/tx200215r}, number={11}, journal={CHEMICAL RESEARCH IN TOXICOLOGY}, author={Sturgeon, Bradley E. and Battenburg, Benjamin J. and Lyon, Blake J. and Franzen, Stefan}, year={2011}, month={Nov}, pages={1862–1868} }
 @article{de serrano_franzen_2011, title={Structural evidence for stabilization of inhibitor binding by a protein cavity in the dehaloperoxidase-hemoglobin from Amphitrite ornata}, volume={98}, ISSN={0006-3525}, url={http://dx.doi.org/10.1002/bip.21674}, DOI={10.1002/bip.21674}, number={1}, journal={Biopolymers}, publisher={Wiley}, author={de Serrano, Vesna and Franzen, Stefan}, year={2011}, month={May}, pages={27–35} }
 @article{lockney_guenther_loo_overton_antonelli_clark_hu_luft_lommel_franzen_2011, title={The Red clover necrotic mosaic virus Capsid as a Multifunctional Cell Targeting Plant Viral Nanoparticle}, volume={22}, ISSN={["1520-4812"]}, DOI={10.1021/bc100361z}, number={1}, journal={BIOCONJUGATE CHEMISTRY}, author={Lockney, Dustin M. and Guenther, Richard N. and Loo, Lina and Overton, Wesley and Antonelli, Ray and Clark, Jennifer and Hu, Mei and Luft, Chris and Lommel, Steven A. and Franzen, Stefan}, year={2011}, month={Jan}, pages={67–73} }
 @article{gaff_franzen_delley_2010, title={Ab Initio Calculation of Resonance Raman Cross Sections Based on Excited State Geometry Optimization}, volume={114}, ISSN={["1089-5639"]}, DOI={10.1021/jp103321x}, number={43}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Gaff, J. F. and Franzen, S. and Delley, B.}, year={2010}, month={Nov}, pages={11681–11690} }
 @article{thompson_parnell_franzen_2010, title={Block the Inhibitor Binding Site in the Interior of Dehaloperoxidase from Amphitrite Ornata}, volume={98}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2009.12.3513}, DOI={10.1016/j.bpj.2009.12.3513}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Thompson, Matthew K. and Parnell, Jonathon M. and Franzen, Stefan}, year={2010}, month={Jan}, pages={641a} }
 @article{thompson_franzen_ghiladi_reeder_svistunenko_2010, title={Compound ES of Dehaloperoxidase Decays via Two Alternative Pathways Depending on the Conformation of the Distal Histidine}, volume={132}, ISSN={0002-7863 1520-5126}, url={http://dx.doi.org/10.1021/ja106620q}, DOI={10.1021/ja106620q}, number={49}, journal={Journal of the American Chemical Society}, publisher={American Chemical Society (ACS)}, author={Thompson, Matthew K. and Franzen, Stefan and Ghiladi, Reza A. and Reeder, Brandon J. and Svistunenko, Dimitri A.}, year={2010}, month={Dec}, pages={17501–17510} }
 @article{davis_bobay_franzen_2010, title={Determination of Separate Inhibitor and Substrate Binding Sites in the Dehaloperoxidase−Hemoglobin fromAmphitrite ornata,}, volume={49}, ISSN={0006-2960 1520-4995}, url={http://dx.doi.org/10.1021/bi9018576}, DOI={10.1021/bi9018576}, number={6}, journal={Biochemistry}, publisher={American Chemical Society (ACS)}, author={Davis, Michael F. and Bobay, Benjamin G. and Franzen, Stefan}, year={2010}, month={Feb}, pages={1199–1206} }
 @misc{franzen_2010, title={Expanding the catalytic repertoire of ribozymes and deoxyribozymes beyond RNA substrates}, volume={12}, number={2}, journal={Current Opinion in Molecular Therapeutics}, author={Franzen, S.}, year={2010}, pages={223–232} }
 @article{franzen_de serrano_oliver_krueger_2010, title={Experimental and Computational Study of the Monomer-Dimer Equilibrium in Dehaloperoxidase from Amphitrite Ornata}, volume={98}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2009.12.3506}, DOI={10.1016/j.bpj.2009.12.3506}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Franzen, Stefan and de Serrano, Vesna and Oliver, Ryan C. and Krueger, Joanna}, year={2010}, month={Jan}, pages={640a} }
 @article{thompson_davis_serrano_nicoletti_howes_smulevich_franzen_2010, title={Internal Binding of Halogenated Phenols in Dehaloperoxidase-Hemoglobin Inhibits Peroxidase Function}, volume={99}, ISSN={["1542-0086"]}, DOI={10.1016/j.bpj.2010.05.041}, number={5}, journal={BIOPHYSICAL JOURNAL}, author={Thompson, Matthew K. and Davis, Michael F. and Serrano, Vesna and Nicoletti, Francesco P. and Howes, Barry D. and Smulevich, Giulietta and Franzen, Stefan}, year={2010}, month={Sep}, pages={1586–1595} }
 @article{ma_thompson_gaff_franzen_2010, title={Kinetic Analysis of a Naturally Occurring Bioremediation Enzyme: Dehaloperoxidase-Hemoglobin from Amphitrite ornata}, volume={114}, ISSN={["1520-6106"]}, DOI={10.1021/jp1014516}, number={43}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Ma, Huan and Thompson, Matthew K. and Gaff, John and Franzen, Stefan}, year={2010}, month={Nov}, pages={13823–13829} }
 @article{nicoletti_thompson_howes_franzen_smulevich_2010, title={New Insights into the Role of Distal Histidine Flexibility in Ligand Stabilization of Dehaloperoxidase-Hemoglobin from Amphitrite ornata}, volume={49}, ISSN={["0006-2960"]}, DOI={10.1021/bi9020567}, number={9}, journal={BIOCHEMISTRY}, author={Nicoletti, Francesco P. and Thompson, Matthew K. and Howes, Barry D. and Franzen, Stefan and Smulevich, Giulietta}, year={2010}, month={Mar}, pages={1903–1912} }
 @article{skalski_taras-goslinska_dembska_gdaniec_franzen_2010, title={Photoinduced Fluorescent Cross-Linking of 5-Chloro- and 5-Fluoro-4-thiouridines with Thymidine}, volume={75}, ISSN={["0022-3263"]}, DOI={10.1021/jo902136k}, number={3}, journal={JOURNAL OF ORGANIC CHEMISTRY}, author={Skalski, Bohdan and Taras-Goslinska, Katarzyna and Dembska, Anna and Gdaniec, Zofia and Franzen, Stefan}, year={2010}, month={Feb}, pages={621–626} }
 @article{kruglik_yoo_franzen_vos_martin_negrerie_2010, title={Picosecond primary structural transition of the heme is retarded after nitric oxide binding to heme proteins}, volume={107}, ISSN={["0027-8424"]}, DOI={10.1073/pnas.0912938107}, number={31}, journal={PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA}, author={Kruglik, Sergei G. and Yoo, Byung-Kuk and Franzen, Stefan and Vos, Marten H. and Martin, Jean-Louis and Negrerie, Michel}, year={2010}, month={Aug}, pages={13678–13683} }
 @article{d’antonio_d’antonio_thompson_bowden_franzen_smirnova_ghiladi_2010, title={Spectroscopic and Mechanistic Investigations of Dehaloperoxidase B fromAmphitrite ornata}, volume={49}, ISSN={0006-2960 1520-4995}, url={http://dx.doi.org/10.1021/bi100407v}, DOI={10.1021/bi100407v}, number={31}, journal={Biochemistry}, publisher={American Chemical Society (ACS)}, author={D’Antonio, Jennifer and D’Antonio, Edward L. and Thompson, Matthew K. and Bowden, Edmond F. and Franzen, Stefan and Smirnova, Tatyana and Ghiladi, Reza A.}, year={2010}, month={Aug}, pages={6600–6616} }
 @article{serrano_d'antonio_franzen_ghiladi_2010, title={Structure of dehaloperoxidase B at 1.58 angstrom resolution and structural characterization of the AB dimer from Amphitrite ornata}, volume={66}, journal={Acta Crystallographica. Section D, Biological Crystallography}, author={Serrano, V. and D'Antonio, J. and Franzen, S. and Ghiladi, R. A.}, year={2010}, pages={529–538} }
 @article{serrano_davis_gaff_zhang_chen_d'antonio_bowden_rose_franzen_2010, title={X-ray structure of the metcyano form of dehaloperoxidase from Amphitrite ornata: Evidence for photoreductive dissociation of the iron-cyanide bond}, volume={66}, journal={Acta Crystallographica. Section D, Biological Crystallography}, author={Serrano, V. S. and Davis, M. F. and Gaff, J. F. and Zhang, Q. and Chen, Z. and D'Antonio, E. L. and Bowden, E. F. and Rose, R. and Franzen, S.}, year={2010}, pages={770–782} }
 @article{gagnon_ju_goshe_maxwell_franzen_2009, title={A role for hydrophobicity in a DielsAlder reaction catalyzed by pyridyl-modified RNA}, volume={37}, ISSN={["1362-4962"]}, DOI={10.1093/nar/gkp177}, number={9}, journal={NUCLEIC ACIDS RESEARCH}, author={Gagnon, Keith T. and Ju, Show-Yi and Goshe, Michael B. and Maxwell, E. Stuart and Franzen, Stefan}, year={2009}, month={May}, pages={3074–3082} }
 @article{feducia_dumarieh_gilvey_smirnova_franzen_ghiladi_2009, title={Characterization of Dehaloperoxidase Compound ES and Its Reactivity with Trihalophenols†}, volume={48}, ISSN={0006-2960 1520-4995}, url={http://dx.doi.org/10.1021/bi801916j}, DOI={10.1021/bi801916j}, number={5}, journal={Biochemistry}, publisher={American Chemical Society (ACS)}, author={Feducia, Jeremiah and Dumarieh, Rania and Gilvey, Lauren B. G. and Smirnova, Tatyana and Franzen, Stefan and Ghiladi, Reza A.}, year={2009}, month={Feb}, pages={995–1005} }
 @article{losego_efremenko_rhodes_cerruti_franzen_maria_2009, title={Conductive oxide thin films: Model systems for understanding and controlling surface plasmon resonance}, volume={106}, ISSN={0021-8979 1089-7550}, url={http://dx.doi.org/10.1063/1.3174440}, DOI={10.1063/1.3174440}, number={2}, journal={Journal of Applied Physics}, publisher={AIP Publishing}, author={Losego, Mark D. and Efremenko, Alina Y. and Rhodes, Crissy L. and Cerruti, Marta G. and Franzen, Stefan and Maria, Jon-Paul}, year={2009}, month={Jul}, pages={024903} }
 @article{gerber_leonard_franzen_2009, title={Conductive thin film multilayers of gold on glass formed by self-assembly of multiple size gold nanoparticles}, volume={517}, ISSN={["0040-6090"]}, DOI={10.1016/j.tsf.2009.05.033}, number={24}, journal={THIN SOLID FILMS}, author={Gerber, Ralph W. and Leonard, Donovan N. and Franzen, Stefan}, year={2009}, month={Oct}, pages={6803–6808} }
 @article{davis_gracz_vendeix_serrano_somasundaram_decatur_franzen_2009, title={Different Modes of Binding of Mono-, Di-, and Trihalogenated Phenols to the Hemoglobin Dehaloperoxidase from Amphitrite ornata}, volume={48}, ISSN={["0006-2960"]}, DOI={10.1021/bi801568s}, number={10}, journal={BIOCHEMISTRY}, author={Davis, Michael F. and Gracz, Hanna and Vendeix, Franck A. P. and Serrano, Vesna and Somasundaram, Aswin and Decatur, Sean M. and Franzen, Stefan}, year={2009}, month={Mar}, pages={2164–2172} }
 @article{chen_serrano_betts_franzen_2009, title={Distal histidine conformational flexibility in dehaloperoxidase from Amphitrite ornata}, volume={65}, ISSN={["2059-7983"]}, DOI={10.1107/S0907444908036548}, journal={ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY}, author={Chen, Zuxu and Serrano, Vesna and Betts, Laurie and Franzen, Stefan}, year={2009}, month={Jan}, pages={34–40} }
 @article{gaff_franzen_2009, title={Excited-State Geometry Method for Calculation of the Absolute Resonance Raman Cross Sections of the Aromatic Amino Acids}, volume={113}, ISSN={["1089-5639"]}, DOI={10.1021/jp809431k}, number={18}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Gaff, John F. and Franzen, Stefan}, year={2009}, month={May}, pages={5414–5422} }
 @article{franzen_2009, title={Intrinsic Limitations on the vertical bar E vertical bar(4) Dependence of the Enhancement Factor for Surface-Enhanced Raman Scattering}, volume={113}, ISSN={["1932-7455"]}, DOI={10.1021/jp808107h}, number={15}, journal={JOURNAL OF PHYSICAL CHEMISTRY C}, author={Franzen, Stefan}, year={2009}, month={Apr}, pages={5912–5919} }
 @article{leonard_franzen_2009, title={Is Pd-2(DBA)(3) a Feasible Precursor for the Synthesis of Pd Nanoparticles?}, volume={113}, ISSN={["1932-7447"]}, DOI={10.1021/jp903417r}, number={29}, journal={JOURNAL OF PHYSICAL CHEMISTRY C}, author={Leonard, D. N. and Franzen, S.}, year={2009}, month={Jul}, pages={12706–12714} }
 @article{franzen_rhodes_cerruti_gerber_losego_maria_aspnes_2009, title={Plasmonic phenomena in indium tin oxide and ITO-Au hybrid films}, volume={34}, ISSN={["1539-4794"]}, DOI={10.1364/OL.34.002867}, number={18}, journal={OPTICS LETTERS}, author={Franzen, Stefan and Rhodes, Crissy and Cerruti, Marta and Gerber, Ralph W. and Losego, Mark and Maria, Jon-Paul and Aspnes, D. E.}, year={2009}, month={Sep}, pages={2867–2869} }
 @article{thompson_davis_franzen_2009, title={Resonance Raman Probes of the Internal Binding Pocket of Dehaloperoxidase from Amphitrite ornata}, volume={96}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2008.12.2239}, DOI={10.1016/j.bpj.2008.12.2239}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Thompson, Matthew K. and Davis, Michael F. and Franzen, Stefan}, year={2009}, month={Feb}, pages={437a} }
 @article{ghiladi_dumarieh_thompson_wang_smirnova_franzen_2009, title={Spectroscopic Probes of the Reactive Intermediates of Dehaloperoxidase from Amphitrite ornata}, volume={96}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2008.12.2240}, DOI={10.1016/j.bpj.2008.12.2240}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Ghiladi, Reza A. and Dumarieh, Rania and Thompson, Matthew and Wang, Zao and Smirnova, Tatyana and Franzen, Stefan}, year={2009}, month={Feb}, pages={437a} }
 @article{franzen_de serrano_davis_thompson_2009, title={Structural Probes Of Reactive Intermediates Of Dehaloperoxidase From Amphitrite ornata}, volume={96}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2008.12.3663}, DOI={10.1016/j.bpj.2008.12.3663}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Franzen, Stefan and de Serrano, Vesna and Davis, Michael F. and Thompson, Matt}, year={2009}, month={Feb}, pages={558a} }
 @article{smirnova_davis_weber_franzen_2009, title={Substrate binding triggers a switch in the iron coordination in dehaloperoxidase from Amphitrite Ornate}, volume={96}, ISSN={0006-3495}, url={http://dx.doi.org/10.1016/j.bpj.2008.12.2241}, DOI={10.1016/j.bpj.2008.12.2241}, number={3}, journal={Biophysical Journal}, publisher={Elsevier BV}, author={Smirnova, Tatyana I. and Davis, Mike F. and Weber, Ralph T. and Franzen, Stefan}, year={2009}, month={Feb}, pages={437a} }
 @misc{franzen_lommel_2009, title={Targeting cancer with 'smart bombs': equipping plant virus nanoparticles for a 'seek and destroy' mission}, volume={4}, ISSN={["1743-5889"]}, DOI={10.2217/nnm.09.23}, number={5}, journal={NANOMEDICINE}, author={Franzen, Stefan and Lommel, Steven A.}, year={2009}, month={Jul}, pages={575–588} }
 @article{rhodes_lappi_fischer_sambasivan_genzer_franzen_2008, title={Characterization of monolayer formation on aluminum-doped zinc oxide thin films}, volume={24}, ISSN={["0743-7463"]}, DOI={10.1021/la701741m}, number={2}, journal={LANGMUIR}, author={Rhodes, Crissy L. and Lappi, Simon and Fischer, Daniel and Sambasivan, Sharadha and Genzer, Jan and Franzen, Stefan}, year={2008}, month={Jan}, pages={433–440} }
 @article{miksovska_horsa_davis_franzen_2008, title={Conformational Dynamics Associated with Photodissociation of CO from Dehaloperoxidase Studied Using Photoacoustic Calorimetry}, volume={47}, ISSN={["0006-2960"]}, DOI={10.1021/bi8012033}, number={44}, journal={BIOCHEMISTRY}, author={Miksovska, Jaroslava and Horsa, Simona and Davis, Michael F. and Franzen, Stefan}, year={2008}, month={Nov}, pages={11510–11517} }
 @article{rhodes_cerruti_efremenko_losego_aspnes_maria_franzen_2008, title={Dependence of plasmon polaritons on the thickness of indium tin oxide thin films}, volume={103}, ISSN={0021-8979 1089-7550}, url={http://dx.doi.org/10.1063/1.2908862}, DOI={10.1063/1.2908862}, number={9}, journal={Journal of Applied Physics}, publisher={AIP Publishing}, author={Rhodes, C. and Cerruti, M. and Efremenko, A. and Losego, M. and Aspnes, D. E. and Maria, J.-P. and Franzen, S.}, year={2008}, month={May}, pages={093108} }
 @article{nienhaus_nickel_davis_franzen_nienhaus_2008, title={Determinants of Substrate Internalization in the Distal Pocket of Dehaloperoxidase Hemoglobin of Amphitrite ornata}, volume={47}, ISSN={["0006-2960"]}, DOI={10.1021/bi801564r}, number={49}, journal={BIOCHEMISTRY}, author={Nienhaus, Karin and Nickel, Elena and Davis, Michael F. and Franzen, Stefan and Nienhaus, G. Ulrich}, year={2008}, month={Dec}, pages={12985–12994} }
 @article{liu_franzen_2008, title={Factors determining the efficacy of nuclear delivery of antisense oligonucleotides by gold nanoparticles}, volume={19}, ISSN={["1520-4812"]}, DOI={10.1021/bc700421u}, number={5}, journal={BIOCONJUGATE CHEMISTRY}, author={Liu, Yanli and Franzen, Stefan}, year={2008}, month={May}, pages={1009–1016} }
 @article{loo_guenther_lommel_franzen_2008, title={Infusion of dye molecules into Red clover necrotic mosaic virus}, ISSN={["1359-7345"]}, DOI={10.1039/b714748a}, number={1}, journal={CHEMICAL COMMUNICATIONS}, author={Loo, LiNa and Guenther, Richard H. and Lommel, Steven A. and Franzen, Stefan}, year={2008}, pages={88–90} }
 @article{leonard_cerruti_duscher_franzen_2008, title={Interfacial and solvent effects govern the formation of tris(dibenzylidenacetone)dipalladium(0) microstructures}, volume={24}, ISSN={["0743-7463"]}, DOI={10.1021/la801039j}, number={15}, journal={LANGMUIR}, author={Leonard, Donovan N. and Cerruti, Marta and Duscher, Gerd and Franzen, Stefan}, year={2008}, month={Aug}, pages={7803–7809} }
 @article{rhodes_brewer_folmer_franzen_2008, title={Investigation of hexadecanethiol self-assembled monolayers on cadmium tin oxide thin films}, volume={516}, ISSN={["0040-6090"]}, DOI={10.1016/j.tsf.2007.08.098}, number={8}, journal={THIN SOLID FILMS}, author={Rhodes, Cnissy L. and Brewer, Scott H. and Folmer, Jaap and Franzen, Stefan}, year={2008}, month={Feb}, pages={1838–1842} }
 @misc{franzen_feldheim_tkachenko_godek_ryan_anderson_2008, title={Nanoparticle delivery vehicle}, volume={7,332,586}, number={2008 Feb. 19}, publisher={Washington, DC: U.S. Patent and Trademark Office}, author={Franzen, S. and Feldheim, D. L. and Tkachenko, A. G. and Godek, M. L. and Ryan, J. A. and Anderson, M. F.}, year={2008} }
 @article{smirnova_weber_davis_franzen_2008, title={Substrate binding triggers a switch in the iron coordination in dehaloperoxidase from Amphitrite ornata: HYSCORE experiments}, volume={130}, ISSN={["0002-7863"]}, DOI={10.1021/ja0772952}, number={7}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Smirnova, Tatyana I. and Weber, Ralph T. and Davis, Mike F. and Franzen, Stefan}, year={2008}, month={Feb}, pages={2128-+} }
 @article{franzen_2008, title={Surface plasmon polaritons and screened plasma absorption in indium tin oxide compared to silver and gold}, volume={112}, ISSN={["1932-7455"]}, DOI={10.1021/jp7097813}, number={15}, journal={JOURNAL OF PHYSICAL CHEMISTRY C}, author={Franzen, Stefan}, year={2008}, month={Apr}, pages={6027–6032} }
 @article{serrano_liu_franzen_2007, title={An infrared spectroscopic study of the conformational transition of elastin-like polypeptides}, volume={93}, ISSN={["0006-3495"]}, DOI={10.1529/biophysj.106.100594}, number={7}, journal={BIOPHYSICAL JOURNAL}, author={Serrano, Vesna and Liu, Wenge and Franzen, Stefan}, year={2007}, month={Oct}, pages={2429–2435} }
 @article{ryan_overton_speight_oldenburg_loo_robarge_franzen_feldheim_2007, title={Cellular uptake of gold nanoparticles passivated with BSA-SV40 large T antigen conjugates}, volume={79}, ISSN={["1520-6882"]}, DOI={10.1021/ac0715524}, number={23}, journal={ANALYTICAL CHEMISTRY}, author={Ryan, Joseph A. and Overton, K. Wesley and Speight, Molly E. and Oldenburg, Christine M. and Loo, Lina and Robarge, Wayne and Franzen, Stefan and Feldheim, Daniel L.}, year={2007}, month={Dec}, pages={9150–9159} }
 @article{moses_brewer_kraemer_fuierer_lowe_agbasi_sauthier_franzen_2007, title={Detection of DNA hybridization on indium tin oxide surfaces}, volume={125}, ISSN={["0925-4005"]}, DOI={10.1016/j.snb.2007.03.009}, number={2}, journal={SENSORS AND ACTUATORS B-CHEMICAL}, author={Moses, Selina and Brewer, Scott H. and Kraemer, Stephan and Fuierer, Ryan R. and Lowe, Lisa B. and Agbasi, Chiamaka and Sauthier, Marc and Franzen, Stefan}, year={2007}, month={Aug}, pages={574–580} }
 @article{loo_guenther_lommel_franzen_2007, title={Encapsidation of nanoparticles by Red Clover Necrotic Mosaic Virus}, volume={129}, ISSN={["1520-5126"]}, DOI={10.1021/ja071896b}, number={36}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Loo, LiNa and Guenther, Richard H. and Lommel, Steven A. and Franzen, Stefan}, year={2007}, month={Sep}, pages={11111–11117} }
 @article{cerruti_rhodes_losego_efremenko_maria_fischer_franzen_genzer_2007, title={Influence of indium-tin oxide surface structure on the ordering and coverage of carboxylic acid and thiol monolayers}, volume={40}, ISSN={["1361-6463"]}, DOI={10.1088/0022-3727/40/14/016}, number={14}, journal={JOURNAL OF PHYSICS D-APPLIED PHYSICS}, author={Cerruti, Marta and Rhodes, Crissy and Losego, Mark and Efremenko, Alina and Maria, Jon-Paul and Fischer, Daniel and Franzen, Stefan and Genzer, Jan}, year={2007}, month={Jul}, pages={4212–4221} }
 @article{kaufman_belyea_johnson_nicholson_ricks_shah_bayless_pettersson_feldoto_blomberg_et al._2007, title={Probing protein adsorption onto mercaptoundecanoic acid stabilized gold nanoparticles and surfaces by quartz crystal microbalance and zeta-potential measurements}, volume={23}, ISSN={["0743-7463"]}, DOI={10.1021/la063725a}, number={11}, journal={LANGMUIR}, author={Kaufman, Eric D. and Belyea, Jennifer and Johnson, Marcus C. and Nicholson, Zach M. and Ricks, Jennifer L. and Shah, Pavak K. and Bayless, Michael and Pettersson, Torbjorn and Feldoto, Zsombor and Blomberg, Eva and et al.}, year={2007}, month={May}, pages={6053–6062} }
 @misc{franzen_lappi_2007, title={Single pass attenuated total reflection fourier transform infrared microscopy apparatus and method for identifying protein secondary structure, surface charge and binding affinity}, volume={7,255,835}, number={2007 Aug. 14}, publisher={Washington, DC: U.S. Patent and Trademark Office}, author={Franzen, S. and Lappi, S. E.}, year={2007} }
 @article{liu_shipton_ryan_kaufman_franzen_feldheim_2007, title={Synthesis, stability, and cellular internalization of gold nanoparticles containing mixed peptide-poly(ethylene glycol) monolayers}, volume={79}, ISSN={["0003-2700"]}, DOI={10.1021/ac061578f}, number={6}, journal={ANALYTICAL CHEMISTRY}, author={Liu, Yanli and Shipton, Mathew K. and Ryan, Joseph and Kaufman, Eric D. and Franzen, Stefan and Feldheim, Daniel L.}, year={2007}, month={Mar}, pages={2221–2229} }
 @article{franzen_gilvey_belyea_2007, title={The pH dependence of the activity of dehaloperoxidase from Amphitrite ornata}, volume={1774}, ISSN={["1570-9639"]}, DOI={10.1016/j.bbapap.2006.09.019}, number={1}, journal={BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS}, author={Franzen, Stefan and Gilvey, Lauren B. and Belyea, Jennifer L.}, year={2007}, month={Jan}, pages={121–130} }
 @article{franzen_cerruti_leonard_duscher_2007, title={The role of selection pressure in RNA-mediated evolutionary materials synthesis}, volume={129}, ISSN={["0002-7863"]}, DOI={10.1021/ja076054r}, number={49}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Franzen, Stefan and Cerruti, Marta and Leonard, Donovan N. and Duscher, Gerd}, year={2007}, month={Dec}, pages={15340–15346} }
 @article{serrano_chen_davis_franzen_2007, title={X-ray crystal structural analysis of the binding site in the ferric and oxyferrous forms of the recombinant heme dehaloperoxidase cloned from Amphitrite ornata}, volume={63}, ISSN={["2059-7983"]}, DOI={10.1107/S0907444907043417}, journal={ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY}, author={Serrano, Vesna and Chen, Zuxu and Davis, Michael F. and Franzen, Stefan}, year={2007}, month={Oct}, pages={1094–1101} }
 @article{loo_guenther_basnayake_lommel_franzen_2006, title={Controlled encapsidation of gold nanoparticles by a viral protein shell}, volume={128}, ISSN={["0002-7863"]}, DOI={10.1021/ja057332u}, number={14}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Loo, L and Guenther, RH and Basnayake, VR and Lommel, SA and Franzen, S}, year={2006}, month={Apr}, pages={4502–4503} }
 @article{cerruti_sauthier_leonard_liu_duscher_feldheim_franzen_2006, title={Gold and silica-coated gold nanoparticles as thermographic labels for DNA detection}, volume={78}, ISSN={["1520-6882"]}, DOI={10.1021/ac0600555}, number={10}, journal={ANALYTICAL CHEMISTRY}, author={Cerruti, Marta G. and Sauthier, Marc and Leonard, Donovan and Liu, Dage and Duscher, Gerard and Feldheim, Daniel L. and Franzen, Stefan}, year={2006}, month={May}, pages={3282–3288} }
 @article{franzen_jasaitis_belyea_brewer_casey_macfarlane_stanley_vos_martin_2006, title={Hydrophobic distal pocket affects NO-heme geminate recombination dynamics in dehaloperoxidase and H64V myoglobin}, volume={110}, ISSN={["1520-6106"]}, DOI={10.1021/jp056790m}, number={29}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Franzen, Stefan and Jasaitis, Audrius and Belyea, Jennifer and Brewer, Scott H. and Casey, Robin and MacFarlane, Alexander W. and Stanley, Robert J. and Vos, Marten H. and Martin, Jean-Louis}, year={2006}, month={Jul}, pages={14483–14493} }
 @article{leonard_jarausch_cerruti_duscher_franzen_feldheim_2006, title={Nanoscale Structural and Chemical Characterization of Silica Coated Gold Nanoparticles Using STEM 3D Imaging and EELS}, volume={12}, ISSN={1431-9276 1435-8115}, url={http://dx.doi.org/10.1017/S1431927606062684}, DOI={10.1017/S1431927606062684}, abstractNote={Extended abstract of a paper presented at Microscopy and Microanalysis 2006 in Chicago, Illinois, USA, July 30 – August 3, 2006}, number={S02}, journal={Microscopy and Microanalysis}, publisher={Cambridge University Press (CUP)}, author={Leonard, DN and Jarausch, KF and Cerruti, MG and Duscher, G and Franzen, S and Feldheim, DL}, year={2006}, month={Jul}, pages={602–603} }
 @article{franzen_belyea_gilvey_davis_chaudhary_sit_lommel_2006, title={Proximal cavity, distal histidine, and substrate hydrogen-bonding mutations modulate the activity of Amphitrite ornata dehaloperoxidase}, volume={45}, ISSN={["0006-2960"]}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-33746584767&partnerID=MN8TOARS}, DOI={10.1021/bi060020z}, number={30}, journal={BIOCHEMISTRY}, publisher={American Chemical Society (ACS)}, author={Franzen, Stefan and Belyea, Jennifer and Gilvey, Lauren B. and Davis, Michael F. and Chaudhary, Chelsea E. and Sit, Tim L. and Lommel, Steven A.}, year={2006}, month={Aug}, pages={9085–9094} }
 @article{belyea_belyea_lappi_franzen_2006, title={Resonance Raman study of ferric heme adducts of dehaloperoxidase from Amphitrite ornata}, volume={45}, ISSN={["0006-2960"]}, DOI={10.1021/bi0609218}, number={48}, journal={BIOCHEMISTRY}, author={Belyea, Jennifer and Belyea, Curtis M. and Lappi, Simon and Franzen, Stefan}, year={2006}, month={Dec}, pages={14275–14284} }
 @article{negrerie_kruglik_lambry_vos_martin_franzen_2006, title={Role of heme iron coordination and protein structure in the dynamics and geminate rebinding of nitric oxide to the H93G myoglobin mutant - Implications for nitric oxide sensors}, volume={281}, ISSN={["1083-351X"]}, DOI={10.1074/jbc.M513375200}, number={15}, journal={JOURNAL OF BIOLOGICAL CHEMISTRY}, author={Negrerie, M and Kruglik, SG and Lambry, JC and Vos, MH and Martin, JL and Franzen, S}, year={2006}, month={Apr}, pages={10389–10398} }
 @article{nienhaus_deng_belyea_franzen_nienhaus_2006, title={Spectroscopic study of substrate binding to the carbonmonoxy form of dehaloperoxidase from Amphitrite ornata}, volume={110}, ISSN={["1520-6106"]}, DOI={10.1021/jp060278z}, number={26}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Nienhaus, Karin and Deng, Pengchi and Belyea, Jennifer and Franzen, Stefan and Nienhaus, G. Ulrich}, year={2006}, month={Jul}, pages={13264–13276} }
 @article{rhodes_franzen_maria_losego_leonard_laughlin_duscher_weibel_2006, title={Surface plasmon resonance in conducting metal oxides}, volume={100}, ISSN={["1089-7550"]}, DOI={10.1063/1.2222070}, number={5}, journal={JOURNAL OF APPLIED PHYSICS}, author={Rhodes, Crissy and Franzen, Stefan and Maria, Jon-Paul and Losego, Mark and Leonard, Donovan N. and Laughlin, Brian and Duscher, Gerd and Weibel, Stephen}, year={2006}, month={Sep} }
 @misc{franzen_brewer_2006, title={Surface plasmon resonance systems and methods having a variable charge density layer}, volume={7,015,471}, publisher={Washington, DC: U.S. Patent and Trademark Office}, author={Franzen, S. and Brewer, S.}, year={2006} }
 @article{bin-salamon_brewer_depperman_franzen_kampf_kirk_kumar_lappi_peariso_preuss_et al._2006, title={Testing Bridge-Mediated Differences in Dinuclear Valence Tautomeric Behavior}, volume={45}, ISSN={0020-1669 1520-510X}, url={http://dx.doi.org/10.1021/ic060170y}, DOI={10.1021/ic060170y}, number={11}, journal={Inorganic Chemistry}, publisher={American Chemical Society (ACS)}, author={Bin-Salamon, Sofi and Brewer, Scott H. and Depperman, Ezra C. and Franzen, Stefan and Kampf, Jeff W. and Kirk, Martin L. and Kumar, R. Krishna and Lappi, Simon and Peariso, Katrina and Preuss, Kathryn E. and et al.}, year={2006}, month={May}, pages={4461–4467} }
 @article{agbasi-porter_ryman-rasmussen_franzen_feldheim_2006, title={Transcription inhibition using oligonucleotide-modified gold nanoparticles}, volume={17}, ISSN={["1043-1802"]}, DOI={10.1021/bc060100f}, number={5}, journal={BIOCONJUGATE CHEMISTRY}, author={Agbasi-Porter, Chiamaka and Ryman-Rasmussen, Jessica and Franzen, Stefan and Feldheim, Daniel}, year={2006}, month={Sep}, pages={1178–1183} }
 @article{glomm_moses_brennaman_papanikolas_franzen_2005, title={Detection of adsorption of Ru(II) and Os(II) polypyridyl complexes on gold and silver nanoparticles by single-photon counting emission measurements}, volume={109}, ISSN={["1520-6106"]}, DOI={10.1021/jp049184k}, number={2}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Glomm, WR and Moses, SJ and Brennaman, MK and Papanikolas, JM and Franzen, S}, year={2005}, month={Jan}, pages={804–810} }
 @article{brewer_vu_tang_li_franzen_raleigh_dyer_2005, title={Effect of modulating unfolded state structure on the folding kinetics of the villin headpiece subdomain}, volume={102}, ISSN={["0027-8424"]}, DOI={10.1073/pnas.0505432102}, number={46}, journal={PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA}, author={Brewer, SH and Vu, DM and Tang, YF and Li, Y and Franzen, S and Raleigh, DP and Dyer, RB}, year={2005}, month={Nov}, pages={16662–16667} }
 @article{belyea_gilvey_davis_godek_sit_lommel_franzen_2005, title={Enzyme function of the globin dehaloperoxidase from Amphitrite ornata is activated by substrate binding}, volume={44}, ISSN={["0006-2960"]}, url={http://www.scopus.com/inward/record.url?eid=2-s2.0-28544440508&partnerID=MN8TOARS}, DOI={10.1021/bi051731k}, number={48}, journal={BIOCHEMISTRY}, publisher={American Chemical Society (ACS)}, author={Belyea, J and Gilvey, LB and Davis, MF and Godek, M and Sit, TL and Lommel, SA and Franzen, S}, year={2005}, month={Dec}, pages={15637–15644} }
 @article{dyer_maness_franzen_fesinmeyer_olsen_andersen_2005, title={Hairpin folding dynamics: The cold-denatured state is predisposed for rapid refolding}, volume={44}, ISSN={["0006-2960"]}, DOI={10.1021/bi050698z}, number={30}, journal={BIOCHEMISTRY}, author={Dyer, RB and Maness, SJ and Franzen, S and Fesinmeyer, RM and Olsen, KA and Andersen, NH}, year={2005}, month={Aug}, pages={10406–10415} }
 @article{brewer_wicaksana_maria_kingon_franzen_2005, title={Investigation of the electrical and optical properties of iridium oxide by reflectance FTIR spectroscopy and density functional theory calculations}, volume={313}, ISSN={0301-0104}, url={http://dx.doi.org/10.1016/j.chemphys.2004.11.014}, DOI={10.1016/j.chemphys.2004.11.014}, number={1-3}, journal={Chemical Physics}, publisher={Elsevier BV}, author={Brewer, Scott H. and Wicaksana, Dwi and Maria, Jon-Paul and Kingon, Angus I. and Franzen, Stefan}, year={2005}, month={Jun}, pages={25–31} }
 @article{brewer_glomm_johnson_knag_franzen_2005, title={Probing BSA binding to citrate-coated gold nanoparticles and surfaces}, volume={21}, ISSN={["0743-7463"]}, DOI={10.1021/la050588t}, number={20}, journal={LANGMUIR}, author={Brewer, SH and Glomm, WR and Johnson, MC and Knag, MK and Franzen, S}, year={2005}, month={Sep}, pages={9303–9307} }
 @article{masternak_wenska_milecki_skalski_franzen_2005, title={Solvatochromism of a novel betaine dye derived from purine}, volume={109}, ISSN={["1089-5639"]}, DOI={10.1021/jp047098e}, number={5}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Masternak, A and Wenska, G and Milecki, J and Skalski, B and Franzen, S}, year={2005}, month={Feb}, pages={759–766} }
 @article{bin-salamon_brewer_franzen_feldheim_lappi_shultz_2005, title={Supramolecular control of valence-tautomeric equilibrium on nanometer-scale gold clusters}, volume={127}, ISSN={["0002-7863"]}, DOI={10.1021/ja042520q}, number={15}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Bin-Salamon, S and Brewer, S and Franzen, S and Feldheim, DL and Lappi, S and Shultz, DA}, year={2005}, month={Apr}, pages={5328–5329} }
 @article{nienhaus_olson_franzen_nienhaus_2005, title={The origin of stark splitting in the initial photoproduct state of MbCO}, volume={127}, ISSN={["1520-5126"]}, DOI={10.1021/ja0466917}, number={1}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Nienhaus, K and Olson, JS and Franzen, S and Nienhaus, GU}, year={2005}, month={Jan}, pages={40–41} }
 @article{polack_ogilvie_franzen_vos_joffre_martin_alexandrou_2004, title={CO vibration as a probe of ligand dissociation and transfer in myoglobin}, volume={93}, ISSN={["0031-9007"]}, DOI={10.1103/physrevlett.93.018102}, number={1}, journal={PHYSICAL REVIEW LETTERS}, author={Polack, T and Ogilvie, JP and Franzen, S and Vos, MH and Joffre, M and Martin, JL and Alexandrou, A}, year={2004}, month={Jul} }
 @article{brewer_franzen_2004, title={Calculation of the electronic and optical properties of indium tin oxide by density functional theory}, volume={300}, ISSN={["1873-4421"]}, DOI={10.1016/j.chemphys.2003.11.039}, number={1-3}, journal={CHEMICAL PHYSICS}, author={Brewer, SH and Franzen, S}, year={2004}, month={May}, pages={285–293} }
 @article{tkachenko_xie_liu_coleman_ryan_glomm_shipton_franzen_feldheim_2004, title={Cellular trajectories of peptide-modified gold particle complexes: Comparison of nuclear localization signals and peptide transduction domains}, volume={15}, ISSN={["1520-4812"]}, DOI={10.1021/bc034189q}, number={3}, journal={BIOCONJUGATE CHEMISTRY}, author={Tkachenko, AG and Xie, H and Liu, YL and Coleman, D and Ryan, J and Glomm, WR and Shipton, MK and Franzen, S and Feldheim, DL}, year={2004}, pages={482–490} }
 @article{moses_brewer_lowe_lappi_gilvey_sauthier_tenent_feldheim_franzen_2004, title={Characterization of single- and double-stranded DNA on gold surfaces}, volume={20}, ISSN={["0743-7463"]}, DOI={10.1021/la0492815}, number={25}, journal={LANGMUIR}, author={Moses, S and Brewer, SH and Lowe, LB and Lappi, SE and Gilvey, LBG and Sauthier, M and Tenent, RC and Feldheim, DL and Franzen, S}, year={2004}, month={Dec}, pages={11134–11140} }
 @article{smith_lappi_brewer_dembowy_belyea_franzen_2004, title={Covalent attachment of a nickel nitrilotriacetic acid group to a germanium attenuated total reflectance element}, volume={20}, ISSN={["0743-7463"]}, DOI={10.1021/la034194i}, number={4}, journal={LANGMUIR}, author={Smith, BM and Lappi, SE and Brewer, SH and Dembowy, S and Belyea, J and Franzen, S}, year={2004}, month={Feb}, pages={1184–1188} }
 @article{shapkina_lappi_franzen_wollenzien_2004, title={Efficiency and pattern of UV pulse laser-induced RNA-RNA cross-linking in the ribosome}, volume={32}, ISSN={["1362-4962"]}, DOI={10.1093/nar/gkh320}, number={4}, journal={NUCLEIC ACIDS RESEARCH}, author={Shapkina, T and Lappi, S and Franzen, S and Wollenzien, P}, year={2004}, month={Feb}, pages={1518–1526} }
 @article{lappi_franzen_2004, title={Eigenvector mapping: a method for discerning solvent effects on vibrational spectra}, volume={60}, DOI={10.1016/S1386-1425(03)00248-8}, number={02-Jan}, journal={Spectrochimica Acta. Part A, Molecular and Biomolecular Spectroscopy.}, author={Lappi, S. E. and Franzen, Stefan}, year={2004}, pages={357–370} }
 @article{brewer_allen_lappi_chasse_briggman_gorman_franzen_2004, title={Infrared detection of a phenylboronic acid terminated alkane thiol monolayer on gold surfaces}, volume={20}, ISSN={["0743-7463"]}, DOI={10.1021/la035037m}, number={13}, journal={LANGMUIR}, author={Brewer, SH and Allen, AM and Lappi, SE and Chasse, TL and Briggman, KA and Gorman, CB and Franzen, S}, year={2004}, month={Jun}, pages={5512–5520} }
 @article{lappi_smith_franzen_2004, title={Infrared spectra of (H2O)-O-16, (H2O)-O-18 and D2O in the liquid phase by single-pass attenuated total internal reflection spectroscopy}, volume={60}, ISSN={["1386-1425"]}, DOI={10.1016/j.saa.2003.12.042}, number={11}, journal={SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY}, author={Lappi, SE and Smith, B and Franzen, S}, year={2004}, month={Sep}, pages={2611–2619} }
 @article{ni_kaur_springsteen_wang_franzen_2004, title={Regulating the fluorescence intensity of an anthracene boronic acid system: a B-N bond or a hydrolysis mechanism?}, volume={32}, ISSN={["1090-2120"]}, DOI={10.1016/j.bioorg.2004.06.004}, number={6}, journal={BIOORGANIC CHEMISTRY}, author={Ni, WJ and Kaur, G and Springsteen, G and Wang, BH and Franzen, S}, year={2004}, month={Dec}, pages={571–581} }
 @article{dyer_maness_peterson_franzen_fesinmeyer_andersen_2004, title={The mechanism of beta-hairpin formation}, volume={43}, ISSN={["0006-2960"]}, DOI={10.1021/bi049177m}, number={36}, journal={BIOCHEMISTRY}, author={Dyer, RB and Maness, SJ and Peterson, ES and Franzen, S and Fesinmeyer, RM and Andersen, NH}, year={2004}, month={Sep}, pages={11560–11566} }
 @article{brewer_franzen_2003, title={A quantitative theory and computational approach for the vibrational Stark effect}, volume={119}, ISSN={["0021-9606"]}, DOI={10.1063/1.1578471}, number={2}, journal={JOURNAL OF CHEMICAL PHYSICS}, author={Brewer, SH and Franzen, S}, year={2003}, month={Jul}, pages={851–858} }
 @article{franzen_2003, title={Density functional calculation of a potential energy surface for alkane thiols on Au(111) as function of alkane chain length}, volume={381}, ISSN={["1873-4448"]}, DOI={10.1016/j.cplett.2003.08.126}, number={3-4}, journal={CHEMICAL PHYSICS LETTERS}, author={Franzen, S}, year={2003}, month={Nov}, pages={315–321} }
 @article{lowe_brewer_kramer_fuierer_qian_agbasi-porter_moses_franzen_feldheim_2003, title={Laser-induced temperature jump electrochemistry on gold nanoparticle-coated electrodes}, volume={125}, ISSN={["0002-7863"]}, DOI={10.1021/ja036672h}, number={47}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Lowe, LB and Brewer, SH and Kramer, S and Fuierer, RR and Qian, GG and Agbasi-Porter, CO and Moses, S and Franzen, S and Feldheim, DL}, year={2003}, month={Nov}, pages={14258–14259} }
 @article{tkachenko_xie_coleman_glomm_ryan_anderson_franzen_feldheim_2003, title={Multifunctional gold nanoparticle-peptide complexes for nuclear targeting}, volume={125}, ISSN={["0002-7863"]}, DOI={10.1021/ja0296935}, number={16}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Tkachenko, AG and Xie, H and Coleman, D and Glomm, W and Ryan, J and Anderson, MF and Franzen, S and Feldheim, DL}, year={2003}, month={Apr}, pages={4700–4701} }
 @article{maness_franzen_gibbs_causgrove_dyer_2003, title={Nanosecond temperature jump relaxation dynamics of cyclic beta-hairpin peptides}, volume={84}, ISSN={["0006-3495"]}, DOI={10.1016/S0006-3495(03)75115-7}, number={6}, journal={BIOPHYSICAL JOURNAL}, author={Maness, SJ and Franzen, S and Gibbs, AC and Causgrove, TP and Dyer, RB}, year={2003}, month={Jun}, pages={3874–3882} }
 @article{franzen_shultz_2003, title={New paradigm for design of high-spin organic molecules: The mechanism of spin-dependent delocalization in exchange-coupled, mixed-valent organic species}, volume={107}, ISSN={["1520-5215"]}, DOI={10.1021/jp0276000}, number={21}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Franzen, S and Shultz, DA}, year={2003}, month={May}, pages={4292–4299} }
 @article{folmer_franzen_2003, title={Study of polymer glasses by modulated differential scanning calorimetry in the undergraduate physical chemistry laboratory}, volume={80}, ISSN={["0021-9584"]}, DOI={10.1021/ed080p813}, number={7}, journal={JOURNAL OF CHEMICAL EDUCATION}, author={Folmer, JCW and Franzen, S}, year={2003}, month={Jul}, pages={813–818} }
 @article{franzen_ni_wang_2003, title={Study of the mechanism of electron-transfer quenching by boron-nitrogen adducts in fluorescent sensors}, volume={107}, ISSN={["1520-5207"]}, DOI={10.1021/jp027457a}, number={47}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Franzen, S and Ni, WJ and Wang, BH}, year={2003}, month={Nov}, pages={12942–12948} }
 @article{franzen_stanley_2002, title={A theoretical explanation for quantum yield failure in bacterial photosynthetic reaction centers}, volume={276}, ISSN={["0301-0104"]}, DOI={10.1016/S0301-0104(01)00582-1}, number={2}, journal={CHEMICAL PHYSICS}, author={Franzen, S and Stanley, RJ}, year={2002}, month={Feb}, pages={115–127} }
 @article{franzen_2002, title={An electrostatic model for the frequency shifts in the carbonmonoxy stretching band of myoglobin: Correlation of hydrogen bonding and the Stark tuning rate}, volume={124}, DOI={10.1021/ja01778d}, number={44}, journal={Journal of the American Chemical Society}, author={Franzen, Stefan}, year={2002}, pages={13271–13281} }
 @article{franzen_2002, title={Carbonmonoxy rebinding kinetics in H93G myoglobin: Separation of proximal and distal side effects}, volume={106}, ISSN={["1520-5207"]}, DOI={10.1021/jp015567w}, number={17}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Franzen, S}, year={2002}, month={May}, pages={4533–4542} }
 @article{marinkovic_huang_bromberg_sullivan_toomey_miller_sperber_moshe_jones_chouparova_et al._2002, title={Center for Synchrotron Biosciences' U2B beamline: an international resource for biological infrared spectroscopy}, volume={9}, ISSN={["1600-5775"]}, DOI={10.1107/S0909049502008543}, number={2002 Jul}, journal={JOURNAL OF SYNCHROTRON RADIATION}, author={Marinkovic, NS and Huang, R and Bromberg, P and Sullivan, M and Toomey, J and Miller, LM and Sperber, E and Moshe, S and Jones, KW and Chouparova, E and et al.}, year={2002}, month={Jul}, pages={189–197} }
 @article{lappi_collier_franzen_2002, title={Density functional analysis of anharmonic contributions to adenine matrix isolation spectra}, volume={106}, ISSN={["1089-5639"]}, DOI={10.1021/jp026017g}, number={47}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Lappi, SE and Collier, W and Franzen, S}, year={2002}, month={Nov}, pages={11446–11455} }
 @article{brewer_anthireya_lappi_drapcho_franzen_2002, title={Detection of DNA hybridization on gold surfaces by polarization modulation infrared reflection absorption spectroscopy}, volume={18}, ISSN={["0743-7463"]}, DOI={10.1021/la025613z}, number={11}, journal={LANGMUIR}, author={Brewer, SH and Anthireya, SJ and Lappi, SE and Drapcho, DL and Franzen, S}, year={2002}, month={May}, pages={4460–4464} }
 @article{franzen_fritsch_brewer_2002, title={Experimental observation of anharmonic coupling of the heme-doming and iron-ligand out-of-plane vibrational modes confirmed by density functional theory}, volume={106}, ISSN={["1520-6106"]}, DOI={10.1021/jp0261197}, number={44}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Franzen, S and Fritsch, K and Brewer, SH}, year={2002}, month={Nov}, pages={11641–11646} }
 @article{brewer_brown_franzen_2002, title={Formation of thiolate and phosphonate adlayers on indium-tin oxide: Optical and electronic characterization}, volume={18}, DOI={10.1021/la01572d}, number={18}, journal={Langmuir}, author={Brewer, S. H. and Brown, D. A. and Franzen, Stefan}, year={2002}, pages={6857–6865} }
 @article{franzen_wallace-williams_shreve_2002, title={Heme charge-transfer band III is vibronically coupled to the soret band}, volume={124}, ISSN={["0002-7863"]}, DOI={10.1021/ja0172722}, number={24}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Franzen, S and Wallace-Williams, SE and Shreve, AP}, year={2002}, month={Jun}, pages={7146–7155} }
 @article{brewer_franzen_2002, title={Indium tin oxide plasma frequency dependence on sheet resistance and surface adlayers determined by reflectance FTIR spectroscopy}, volume={106}, ISSN={["1520-6106"]}, DOI={10.1021/jp026600x}, number={50}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Brewer, SH and Franzen, S}, year={2002}, month={Dec}, pages={12986–12992} }
 @article{sauthier_carroll_gorman_franzen_2002, title={Nanoparticle Layers Assembled through DNA Hybridization:  Characterization and Optimization}, volume={18}, ISSN={["0743-7463"]}, DOI={10.1021/la0112763}, number={5}, journal={Langmuir}, author={Sauthier, M.L. and Carroll, R.L. and Gorman, C.B. and Franzen, S.}, year={2002}, pages={1825–1830} }
 @article{franzen_folmer_glomm_r o'neal_2002, title={Optical properties of dye molecules adsorbed on single gold and silver nanoparticles}, volume={106}, ISSN={["1520-5215"]}, DOI={10.1021/jp025536g}, number={28}, journal={JOURNAL OF PHYSICAL CHEMISTRY A}, author={Franzen, S and Folmer, JCW and Glomm, WR and R O'Neal}, year={2002}, month={Jul}, pages={6533–6540} }
 @article{brewer_franzen_2002, title={Optical properties of indium tin oxide and fluorine-doped tin oxide surfaces: correlation of reflectivity, skin depth, and plasmon frequency with conductivity}, volume={338}, ISSN={["0925-8388"]}, DOI={10.1016/S0925-8388(02)00217-7}, number={1-2}, journal={JOURNAL OF ALLOYS AND COMPOUNDS}, author={Brewer, SH and Franzen, S}, year={2002}, month={May}, pages={73–79} }
 @article{franzen_2002, title={Perimeter model for the magnetic circular dichroism spectrum of deoxy ferrous heme in myoglobin}, volume={106}, ISSN={["1520-6106"]}, DOI={10.1021/jp025616k}, number={40}, journal={JOURNAL OF PHYSICAL CHEMISTRY B}, author={Franzen, S}, year={2002}, month={Oct}, pages={10482–10491} }
 @article{franzen_peterson_brown_friedman_thomas_boxer_2002, title={Proximal ligand motions in H93G myoglobin}, volume={269}, ISSN={["0014-2956"]}, DOI={10.1046/j.1432-1033.2002.03193.x}, number={19}, journal={EUROPEAN JOURNAL OF BIOCHEMISTRY}, author={Franzen, S and Peterson, ES and Brown, D and Friedman, JM and Thomas, MR and Boxer, SG}, year={2002}, month={Oct}, pages={4879–4886} }
 @article{smith_franzen_2002, title={Single-pass attenuated total reflection Fourier transform infrared spectroscopy for the analysis of proteins in H2O solution}, volume={74}, ISSN={["0003-2700"]}, DOI={10.1021/ac020103v}, number={16}, journal={ANALYTICAL CHEMISTRY}, author={Smith, BM and Franzen, S}, year={2002}, month={Aug}, pages={4076–4080} }
 @article{smith_oswald_franzen_2002, title={Single-pass attenuated total reflection Fourier transform infrared spectroscopy for the prediction of protein secondary structure}, volume={74}, ISSN={["0003-2700"]}, DOI={10.1021/ac020104n}, number={14}, journal={ANALYTICAL CHEMISTRY}, author={Smith, BM and Oswald, L and Franzen, S}, year={2002}, month={Jul}, pages={3386–3391} }
 @article{franzen_2002, title={Spin-dependent mechanism for diatomic ligand binding to heme}, volume={99}, ISSN={["0027-8424"]}, DOI={10.1073/pnas.252590999}, number={26}, journal={PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA}, author={Franzen, S}, year={2002}, month={Dec}, pages={16754–16759} }
 @article{franzen_bailey_dyer_woodruff_hu_thomas_boxer_2001, title={A photolysis-triggered heme ligand switch in H93G myoglobin}, volume={40}, ISSN={["0006-2960"]}, DOI={10.1021/bi0023403}, number={17}, journal={BIOCHEMISTRY}, author={Franzen, S and Bailey, J and Dyer, RB and Woodruff, WH and Hu, RB and Thomas, MR and Boxer, SG}, year={2001}, month={May}, pages={5299–5305} }
 @article{franzen_2001, title={Effect of a charge relay on the vibrational frequencies of carbonmonoxy iron porphine adducts: The coupling of changes in axial ligand bond strength and porphine core size}, volume={123}, ISSN={["1520-5126"]}, DOI={10.1021/ja0108988}, number={50}, journal={JOURNAL OF THE AMERICAN CHEMICAL SOCIETY}, author={Franzen, S}, year={2001}, month={Dec}, pages={12578–12589} }
 @article{franzen_miskowski_shreve_wallace-williams_woodruff_ondrias_barr_moore_boxer_2001, title={Electrostatic and conformational effects on the electronic structures of distortional isomers of a mixed-valence binuclear Cu complex}, volume={40}, ISSN={["0020-1669"]}, DOI={10.1021/ic010494g}, number={25}, journal={INORGANIC CHEMISTRY}, author={Franzen, S and Miskowski, VM and Shreve, AP and Wallace-Williams, SE and Woodruff, WH and Ondrias, MR and Barr, ME and Moore, L and Boxer, SG}, year={2001}, month={Dec}, pages={6375–6382} }
 @article{thomas_brown_franzen_boxer_2001, title={FTIR and resonance Raman studies of nitric oxide binding to H93G cavity mutants of myoglobin}, volume={40}, ISSN={["0006-2960"]}, DOI={10.1021/bi011440l}, number={49}, journal={BIOCHEMISTRY}, author={Thomas, MR and Brown, D and Franzen, S and Boxer, SG}, year={2001}, month={Dec}, pages={15047–15056} }
 @article{franzen_kiger_poyart_martin_2001, title={Heme photolysis occurs by ultrafast excited state metal-to-ring charge transfer}, volume={80}, ISSN={["0006-3495"]}, DOI={10.1016/S0006-3495(01)76207-8}, number={5}, journal={BIOPHYSICAL JOURNAL}, author={Franzen, S and Kiger, L and Poyart, C and Martin, JL}, year={2001}, month={May}, pages={2372–2385} }
 @article{novak_nickerson_franzen_feldheim_2001, title={Purification of molecularly bridged metal nanoparticle arrays by centrifugation and size exclusion chromatography}, volume={73}, ISSN={["0003-2700"]}, DOI={10.1021/ac010812t}, number={23}, journal={ANALYTICAL CHEMISTRY}, author={Novak, JP and Nickerson, C and Franzen, S and Feldheim, DL}, year={2001}, month={Dec}, pages={5758–5761} }
 @article{pop_chen_smith_bose_bobay_tripathy_franzen_clark_2001, title={Removal of the pro-domain does not affect the conformation of the procaspase-3 dimer}, volume={40}, ISSN={["0006-2960"]}, DOI={10.1021/bi011037e}, number={47}, journal={BIOCHEMISTRY}, author={Pop, C and Chen, YR and Smith, B and Bose, K and Bobay, B and Tripathy, A and Franzen, S and Clark, AC}, year={2001}, month={Nov}, pages={14224–14235} }