Works (35)

Updated: August 1st, 2023 21:16

2020 journal article

Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots

PLOS GENETICS, 16(10).

By: E. Wear n, J. Song, G. Zynda, L. Mickelson-Young n, C. LeBlanc*, T. Lee n, D. Deppong n, G. Allen n ...

MeSH headings : Cell Nucleus / drug effects; Cell Nucleus / genetics; Centromere / drug effects; Centromere / genetics; DNA Replication / drug effects; DNA Replication / genetics; DNA Replication Timing / drug effects; DNA Replication Timing / genetics; DNA, Plant / drug effects; DNA, Plant / genetics; Deoxyuridine / analogs & derivatives; Deoxyuridine / pharmacology; Endocytosis / drug effects; Meristem / drug effects; Meristem / genetics; Mitosis / drug effects; Mitosis / genetics; Nucleosomes / drug effects; Plant Roots / drug effects; Plant Roots / genetics; Plant Roots / growth & development; S Phase / genetics; Zea mays / genetics; Zea mays / growth & development
Sources: Web Of Science, ORCID
Added: November 9, 2020

2017 journal article

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips

PLANT CELL, 29(9), 2126–2149.

By: E. Wear n, J. Song, G. Zynda, C. LeBlanc*, T. Lee n, L. Mickelson-Young n, L. Concia n, P. Mulvaney n ...

MeSH headings : Base Sequence; Chromosomes, Plant / genetics; DNA Replication Timing / genetics; DNA Transposable Elements / genetics; Genes, Plant; Genomics; Meristem / cytology; Meristem / genetics; Mitosis / genetics; Models, Genetic; S Phase / genetics; Tandem Repeat Sequences / genetics; Time Factors; Transcription, Genetic; Zea mays / cytology; Zea mays / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

A flow cytometric method for estimating S-phase duration in plants

JOURNAL OF EXPERIMENTAL BOTANY, 67(21), 6077–6087.

author keywords: Arabidopsis; barley; EdU; flow cytometry; maize; replication timing; rice; S-phase duration; wheat
MeSH headings : Arabidopsis / cytology; Arabidopsis / growth & development; DNA, Plant / metabolism; Deoxyuridine / analogs & derivatives; Deoxyuridine / metabolism; Flow Cytometry / methods; G1 Phase / physiology; G2 Phase / physiology; Hordeum / cytology; Hordeum / growth & development; Meristem / cytology; Meristem / growth & development; Oryza / cytology; Oryza / growth & development; S Phase / physiology; Triticum / cytology; Triticum / growth & development; Zea mays / cytology; Zea mays / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Defining multiple, distinct, and shared spatiotemporal patterns of DNA replication and endoreduplication from 3D image analysis of developing maize (Zea mays L.) root tip nuclei

PLANT MOLECULAR BIOLOGY, 89(4-5), 339–351.

By: H. Bass*, G. Hoffman*, T. Lee n, E. Wear n, S. Joseph*, G. Allen n, L. Hanley-Bowdoin n, W. Thompson n

author keywords: Cell cycle; DNA synthesis; Grass
MeSH headings : Cell Nucleus / genetics; Cell Nucleus / metabolism; DNA Replication / genetics; DNA Replication Timing / genetics; DNA, Plant / biosynthesis; DNA, Plant / genetics; Endoreduplication / genetics; Genes, Plant; Imaging, Three-Dimensional; Meristem / genetics; Meristem / growth & development; Meristem / metabolism; Models, Biological; S Phase / genetics; Zea mays / genetics; Zea mays / growth & development; Zea mays / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 review

A maize root tip system to study DNA replication programmes in somatic and endocycling nuclei during plant development

[Review of ]. JOURNAL OF EXPERIMENTAL BOTANY, 65(10), 2747–2756.

By: H. Bass*, E. Wear n, T. Lee n, G. Hoffman*, H. Gumber*, G. Allen n, W. Thompson n, L. Hanley-Bowdoin n

author keywords: DNA replication; EdU; endocycle; flow cytometry; high-resolution microscopy; maize; mitotic cell cycle; root development; S phase
MeSH headings : Base Sequence; Cell Nucleus / genetics; DNA Replication; DNA, Plant / biosynthesis; In Situ Hybridization, Fluorescence; Oligonucleotide Probes; Plant Roots / growth & development; Zea mays / genetics; Zea mays / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Effect of various sterilization procedures on the in vitro germination of cotton seeds

PLANT CELL TISSUE AND ORGAN CULTURE, 118(1), 179–185.

By: S. Barampuram n, G. Allen n & S. Krasnyanski n

author keywords: Sterilization; Chlorine gas; Commercial bleach; Hydrogen peroxide; In vitro; Seed germination
Source: Web Of Science
Added: August 6, 2018

2014 journal article

In Vivo Mapping of Arabidopsis Scaffold/Matrix Attachment Regions Reveals Link to Nucleosome-Disfavoring Poly(dA:dT) Tracts

PLANT CELL, 26(1), 102–120.

By: P. Pascuzzi n, M. Flores-Vergara n, T. Lee n, B. Sosinski n, M. Vaughn, L. Hanley-Bowdoin n, W. Thompson n, G. Allen n

MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Arabidopsis Proteins / physiology; Chromatin / metabolism; Gene Expression Regulation, Plant; Matrix Attachment Regions; Nucleosomes / metabolism; Nucleotide Motifs; Poly dA-dT / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription Factors / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Identification and Functional Analysis of Tomato BRI1 and BAK1 Receptor Kinase Phosphorylation Sites

PLANT PHYSIOLOGY, 163(1), 30–42.

By: V. Bajwa, X. Wang*, R. Blackburn n, M. Goshe n, S. Mitra*, E. Williams*, G. Bishop*, S. Krasnyanski* ...

MeSH headings : Binding Sites; Kinetics; Solanum lycopersicum / enzymology; Phosphorylation; Plant Proteins / chemistry; Plant Proteins / metabolism; Protein Serine-Threonine Kinases / chemistry; Protein Serine-Threonine Kinases / metabolism; Signal Transduction
Source: Web Of Science
Added: August 6, 2018

2013 journal article

Overexpression of mannitol dehydrogenase in zonal geranium confers increased resistance to the mannitol secreting fungal pathogen Botrytis cinerea

Plant Cell, Tissue and Organ Culture, 115(3), 367–375.

By: J. Williamson n, A. Desai n, S. Krasnyanski n, F. Ding n, W. Guo n, T. Nguyen n, H. Olson n, J. Dole n, G. Allen n

Source: NC State University Libraries
Added: August 6, 2018

2012 journal article

A Novel Glyceraldehyde-3-Phosphate Dehydrogenase (GAPDH) Promoter for Expressing Transgenes in the Halotolerant Alga Dunaliella salina

CURRENT MICROBIOLOGY, 64(5), 506–513.

By: Y. Jia*, S. Li*, G. Allen n, S. Feng* & L. Xue*

MeSH headings : Base Sequence; Chlorophyta / drug effects; Chlorophyta / enzymology; Chlorophyta / genetics; Chlorophyta / metabolism; Collagen Type IV / genetics; Collagen Type IV / metabolism; Gene Expression; Glyceraldehyde-3-Phosphate Dehydrogenases / genetics; Glyceraldehyde-3-Phosphate Dehydrogenases / metabolism; Humans; Molecular Sequence Data; Organophosphorus Compounds / pharmacology; Promoter Regions, Genetic; Sodium Chloride / metabolism; Transgenes
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State

PLoS Genetics, 6(6), e1000982.

By: T. Lee n, P. Pascuzzi n, S. Settlage n, R. Shultz n, M. Tanurdzic*, P. Rabinowicz*, M. Menges*, P. Zheng* ...

Ed(s): G. Copenhaver

MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Chromatin / genetics; Chromosomes, Plant; DNA Replication; Epigenesis, Genetic; Flow Cytometry; Oligonucleotide Array Sequence Analysis; Replicon; S Phase
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2009 journal article

Dynamic Localization of the DNA Replication Proteins MCM5 and MCM7 in Plants

PLANT PHYSIOLOGY, 150(2), 658–669.

By: R. Shultz n, T. Lee n, G. Allen n, W. Thompson n & L. Hanley-Bowdoin n

MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Cell Cycle; Cell Cycle Proteins / metabolism; Cell Nucleus / metabolism; Chromatin / metabolism; DNA Replication; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Minichromosome Maintenance Complex Component 7; Multiprotein Complexes / genetics; Multiprotein Complexes / metabolism; Origin Recognition Complex / metabolism; Plant Roots / cytology; Plant Roots / metabolism; Protein Binding; Protein Subunits / genetics; Protein Subunits / metabolism; Protein Transport; Tobacco / cytology; Tobacco / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Rapid shoot regeneration in industrial 'high starch' sweetpotato (Ipomoea batatas L.) genotypes

PLANT CELL TISSUE AND ORGAN CULTURE, 97(1), 109–117.

By: M. Santa-Maria n, K. Pecota n, C. Yencho n, G. Allen n & B. Sosinski n

author keywords: Meristem culture; High dry matter; Organogenesis; Storage roots; Sweet potato; Virus indexing
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide

NATURE PROTOCOLS, 1(5), 2320–2325.

By: G. Allen n, M. Flores-Vergara n, S. Krasnyanski, S. Kumar n & W. Thompson n

MeSH headings : Cetrimonium; Cetrimonium Compounds; DNA, Plant / isolation & purification; Magnoliopsida / chemistry; Plant Leaves / chemistry; Time Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 review

Gene targeting in plants: fingers on the move

[Review of ]. TRENDS IN PLANT SCIENCE, 11(4), 159–161.

By: S. Kumar n, G. Allen n & W. Thompson n

MeSH headings : Chromatin Assembly and Disassembly; DNA Repair; Endodeoxyribonucleases / chemistry; Endodeoxyribonucleases / metabolism; Gene Targeting / methods; Genome, Plant; Plants / genetics; Recombination, Genetic; Zinc Fingers / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 patent

High efficiency gene targeting in plants

Washington, DC: U.S. Patent and Trademark Office.

By: G. Helmer, G. Allen & W. Thompson

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Matrix attachment regions and regulated transcription increase and stabilize transgene expression

PLANT BIOTECHNOLOGY JOURNAL, 3(5), 535–543.

By: R. Abranches n, R. Shultz n, W. Thompson n & G. Allen n

author keywords: PTGS; TGS; RNAi; MARs; transgene expression; induction
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Analysis of trans-silencing interactions using transcriptional silencers of varying strength and targets with and without flanking nuclear matrix attachment regions

TRANSGENIC RESEARCH, 12(3), 305–318.

By: R. Ascenzi n, B. Ulker n, J. Todd n, D. Sowinski n, C. Schimeneck n, G. Allen n, A. Weissinger n, W. Thompson n

author keywords: matrix attachment region; tobacco; transcriptional gene silencing; transgene expression; trans-silencing
MeSH headings : Gene Silencing; Inheritance Patterns; Matrix Attachment Regions / genetics; Seedlings / genetics; Sequence Homology; Silencer Elements, Transcriptional; Tobacco / genetics; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2003 journal article

Elevation of transgene expression level by flanking matrix attachment regions (MAR) is promoter dependent: a study of the interactions of six promoters with the RB7 3 ' MAR

TRANSGENIC RESEARCH, 12(1), 3–12.

By: S. Mankin n, G. Allen*, T. Phelan n, S. Spiker n & W. Thompson n

author keywords: gene silencing; matrix attachment regions; transformation; transgene expression
MeSH headings : 3' Untranslated Regions / genetics; DNA Primers / chemistry; Gene Expression Regulation, Plant; Genes, Plant / physiology; Glucuronidase / genetics; Glucuronidase / metabolism; Hot Temperature; Nuclear Matrix / physiology; Plant Leaves / genetics; Plant Leaves / growth & development; Plants, Genetically Modified / genetics; Plants, Genetically Modified / growth & development; Polymerase Chain Reaction; Promoter Regions, Genetic / genetics; Tobacco / genetics; Tobacco / growth & development; Transformation, Genetic; Transgenes / physiology; Up-Regulation
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

Differential Top10 promoter regulation by six tetracycline analogues in plant cells

JOURNAL OF EXPERIMENTAL BOTANY, 53(376), 1871–1877.

By: J. Love*, G. Allen*, C. Gatz & W. Thompson*

author keywords: tetracycline analogues; tobacco; Top10 promoter activity; tissue culture
MeSH headings : Agrobacterium tumefaciens / genetics; Cell Line; Doxycycline / pharmacology; Gene Expression Regulation, Plant / drug effects; Glucuronidase / genetics; Glucuronidase / metabolism; Minocycline / pharmacology; Oxytetracycline / pharmacology; Plants, Genetically Modified; Promoter Regions, Genetic / genetics; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Repressor Proteins / genetics; Tetracyclines / chemistry; Tetracyclines / pharmacology; Tobacco / cytology; Tobacco / drug effects; Tobacco / genetics; Transfection
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

High-throughput transgene copy number estimation by competitive PCR

PLANT MOLECULAR BIOLOGY REPORTER, 20(3), 265–277.

By: A. Callaway n, R. Abranches n, J. Scroggs n, G. Allen n & W. Thompson n

author keywords: competitive; copy number; high throughput; PCR; quantitative; transgenic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2000 patent

Increasing expression of transgenes in plant cells using insulator elements

Washington, DC: U.S. Patent and Trademark Office.

By: W. Thompson, G. Allen & S. Mankin

Source: NC State University Libraries
Added: August 6, 2018

2000 patent

Method for reducing expression variability of transgenes in plant cells

Washington, DC: U.S. Patent and Trademark Office.

By: W. Thompson, G. Allen & S. Mankin

Source: NC State University Libraries
Added: August 6, 2018

2000 review

Use of matrix attachment regions (MARs) to minimize transgene silencing

[Review of ]. PLANT MOLECULAR BIOLOGY, 43(2-3), 361–376.

By: G. Allen*, S. Spiker* & W. Thompson n

author keywords: chromatin structure; gene silencing; MAR; nuclear matrix; nuclear scaffold; SAR
MeSH headings : Animals; DNA / genetics; DNA / metabolism; Gene Expression Regulation, Plant; Gene Silencing; Humans; Nuclear Matrix / metabolism; Nuclear Proteins / metabolism; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Protein Binding; Transgenes / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

1999 journal article

A tobacco matrix attachment region reduces the loss of transgene expression in the progeny of transgenic tobacco plants

PLANT JOURNAL, 18(3), 253–263.

By: B. Ulker, G. Allen*, W. Thompson*, S. Spiker* & A. Weissinger*

Sources: Web Of Science, ORCID
Added: August 6, 2018

1999 journal article

Characterization of randomly-obtained matrix attachment regions (MARs) from higher plants

BIOCHEMISTRY, 38(39), 12795–12804.

By: S. Michalowski n, G. Allen n, G. Hall n, W. Thompson n & S. Spiker n

MeSH headings : Base Sequence; Cloning, Molecular; DNA, Plant; Molecular Sequence Data; Nuclear Matrix / metabolism; Plants / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

1999 journal article

Matrix attachment regions increase transgene expression levels and stability in transgenic rice plants and their progeny

PLANT JOURNAL, 18(3), 233–242.

By: P. Vain*, B. Worland*, A. Kohli*, J. Snape*, P. Christou*, G. Allen n, W. Thompson n

Sources: Web Of Science, ORCID
Added: August 6, 2018

1998 journal article

Ferredoxin-1 mRNA is destabilized by changes in photosynthetic electron transport

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 95(15), 9009–9013.

By: M. Petracek n, L. Dickey n, T. Nguyen n, C. Gatz n, D. Sowinski n, G. Allen n, W. Thompson n

MeSH headings : Diuron / pharmacology; Electron Transport; Ferredoxins / genetics; Half-Life; Histones / genetics; Photosynthesis / drug effects; Plants, Genetically Modified / genetics; Plants, Toxic; Promoter Regions, Genetic; RNA, Messenger / metabolism; Tetracycline / pharmacology; Tobacco / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

1998 patent

Method of increasing expression for foreign genes in plant cells

Washington, DC: U.S. Patent and Trademark Office.

Source: NC State University Libraries
Added: August 6, 2018

1998 patent

Plant nuclear scaffold attachment region and method for increasing gene expression in transgenic cells

Washington, DC: U.S. Patent and Trademark Office.

Source: NC State University Libraries
Added: August 6, 2018

1998 chapter

The dependence of Fed-1 light regulation on translation

In J. Bailey-Serres & D. R. Gallie (Eds.), A look beyond transcription: Mechanisms determining mRNAstability and translation in plants (pp. 96–101). Washington, DC: American Society of Plant Physiologists.

By: M. Petracek, L. Dickey, E. Hansen, D. Sowinski, T. Nguyen, G. Allen, G. Thompson

Ed(s): . J. Bailey-Serres & D. Gallie

Source: NC State University Libraries
Added: August 6, 2018

1997 journal article

Introduction of a plant intron into the luciferase gene of Photinus pyralis

Plant Molecular Biology Reporter, 15(2), 186–196.

By: S. Mankin n, G. Allen n & W. Thompson n

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

1996 journal article

High-Level Transgene Expression in Plant Cells: Effects of a Strong Scaffold Attachment Region from Tobacco

The Plant Cell, 8(5), 899.

By: G. Allen*, G. Hall, S. Michalowski, W. Newman, S. Spiker, A. Weissinger, W. Thompson*

Sources: NC State University Libraries, Crossref, ORCID
Added: August 6, 2018

1993 journal article

Scaffold attachment regions increase reporter gene expresssion in stably transformed plant cells

Plant Cell, 5(6), 603–613.

By: G. Allen*, G. Hall, L. Childs, A. Weissinger, S. Spiker & W. Thompson*

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

1991 journal article

Oxygen uptake and hydrogen-stimulated nitrogenase activity from Azorhizobium caulinodans ORS571 grown in a succinate-limited chemostat

Applied and Environmental Microbiology, 57(11), 3220.

By: G. Allen, D. Grimm & G. Elkan

Source: NC State University Libraries
Added: August 6, 2018