Works (97)
2026 article
Quantitative Biology
Conant, G. (2026, January 5). CRC Press.
2025 article
A Class of Allopolyploidy Showing High Duplicate Retention and Continued Homoeologous Exchanges
Coppage, A., Bhatnagar, E., Joshi, M., Siddiqui, M., McRae, L., & Conant, G. C. (2025, March 19). Genome Biology and Evolution, Vol. 17.
open access via doi.org (publisher)
2025 article
A Reference-Quality NLRome for the Hexaploid Sweetpotato and Diploid Wild Relatives
Parada-Rojas, C. H., Childs, K. L., Soto, M. F., Salcedo, A., Pecota, K., Yencho, G. C., … Quesada-Ocampo, L. M. (2025, January 1). Molecular Plant-Microbe Interactions.
2025 article
Mesopolyploidy as a taxonomic clade marker for Brassica and relatives (tribe Brassiceae)
Thomas, S. K., Abrahams, R. S., Kick, D. R., Walden, N., Conant, G., McKain, M. R., … Pires, J. C. (2025, August 2). Annals of Botany.
2025 article
Missing mate pairs reported as poly-G reads can confound analyses of rare members of microbial assemblages
Dhillon, A. K., Workman, A., Kuehn, L. A., Earley, B., Cosby, S. L., Powell, A. J., … Conant, G. C. (2025, August 22). Ecological Genetics and Genomics.
2024 article
Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
Steindorff, A. S., Aguilar-Pontes, M. V., Robinson, A. J., Andreopoulos, B., LaButti, K., Kuo, A., … Grigoriev, I. V. (2024, September 12). Communications Biology, Vol. 7.
2024 article
Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression
An, H., Pires, J. C., & Conant, G. C. (2024, January 16). PLoS Computational Biology, Vol. 20.
2024 article
Shared single copy genes are generally reliable for inferring phylogenetic relationships among polyploid taxa
Naranjo, J. G., Sither, C. B., & Conant, G. C. (2024, April 26). Molecular Phylogenetics and Evolution, Vol. 196.
2023 article
Complementing model species with model clades
Mabry, M. E., Abrahams, R. S., Al-Shehbaz, I. A., Baker, W. J., Barak, S., Barker, M. S., … Harkess, A. E. (2023, October 12). The Plant Cell, Vol. 10.
2023 article
Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization
Yang, Y., Xu, T., Conant, G., Kishino, H., Thorne, J. L., & Ji, X. (2023, September 1). Molecular Biology and Evolution, Vol. 40.
2023 article
POInT: Modeling Polyploidy in the Era of Ubiquitous Genomics
Conant, G. C. (2023, January 1). Methods in Molecular Biology.
2023 article
POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes
Siddiqui, M., & Conant, G. C. (2023, April 27). BMC Bioinformatics, Vol. 24.
2022 article
Convergent evolution of polyploid genomes from across the eukaryotic tree of life
Hao, Y., Fleming, J., Petterson, J., Lyons, E., Edger, P. P., Pires, J. C., … Conant, G. C. (2022, April 22). G3 Genes Genomes Genetics, Vol. 5.
2022 article
Hybridization order is not the driving factor behind biases in duplicate gene losses among the hexaploid Solanaceae
McRae, L., Beric, A., & Conant, G. C. (2022, October 26). Proceedings of the Royal Society B Biological Sciences, Vol. 10.
2021 article
A metagenomic analysis of the effect of antibiotic feed additives on the ovine rumen metabolism
Patil, R. D., Ellison, M. J., Austin, K. J., Lamberson, W. R., Cammack, K. M., & Conant, G. C. (2021, September 21). Small Ruminant Research, Vol. 12.
2021 article
Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales)
Beric, A., Mabry, M. E., Harkess, A. E., Brose, J., Schranz, M. E., Conant, G. C., … Pires, J. C. (2021, May 16). G3 Genes Genomes Genetics, Vol. 7.
2021 article
Distinct C 4 sub‐types and C 3 bundle sheath isolation in the Paniceae grasses
Washburn, J. D., Strable, J., Dickinson, P., Kothapalli, S. S., Brose, J. M., Covshoff, S., … Pires, J. C. (2021, December 1). Plant Direct, Vol. 12.
2021 article
Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa
Qi, X., An, H., Hall, T. E., Di, C., Blischak, P. D., McKibben, M. T. W., … Barker, M. S. (2021, January 16). New Phytologist, Vol. 230, pp. 372–386.
2021 article
The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible
Hao, Y., Mabry, M. E., Edger, P. P., Freeling, M., Zheng, C., Jin, L., … Conant, G. C. (2021, April 16). Genome Research, Vol. 5.
2020 article
Baby Genomics: Tracing the Evolutionary Changes That Gave Rise to Placentation
Hao, Y., Lee, H. J., Baraboo, M., Burch, K., Maurer, T., Somarelli, J. A., & Conant, G. C. (2020, February 5). Genome Biology and Evolution, Vol. 12, pp. 35–47.
2020 article
Phylogeny and multiple independent whole‐genome duplication events in the Brassicales
Mabry, M. E., Brose, J. M., Blischak, P. D., Sutherland, B., Dismukes, W. T., Bottoms, C. A., … Pires, J. C. (2020, August 1). American Journal of Botany, Vol. 107, pp. 1148–1164.
2020 article
The lasting after-effects of an ancient polyploidy on the genomes of teleosts
Conant, G. C. (2020, April 16). PLoS ONE, Vol. 15.
2019 article
A Single, Shared Triploidy in Three Species of Parasitic Nematodes
Schoonmaker, A., Hao, Y., Bird, D. M. K., & Conant, G. C. (2019, November 7). G3 Genes Genomes Genetics, Vol. 10, pp. 225–233.
Contributors: A. Schoonmaker*, Y. Hao*, D. Bird* & n
2019 article
Functional characterization of SMN evolution in mouse models of SMA
Osman, E. Y., Bolding, M. R., Villalón, E., Kaifer, K. A., Lorson, Z. C., Tisdale, S., … Lorson, C. L. (2019, July 1). Scientific Reports, Vol. 9.
2019 article
Predicting residual feed intake status using rumen microbial profiles in ewe lambs1
Ellison, M. J., Conant, G. C., Lamberson, W. R., Austin, K. J., Kirk, E., Cunningham, H. C., … Cammack, K. M. (2019, May 15). Journal of Animal Science, Vol. 97, pp. 2878–2888.
2019 article
Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus
An, H., Qi, X., Gaynor, M. L., Hao, Y., Gebken, S. C., Mabry, M. E., … Pires, J. C. (2019, June 28). Nature Communications, Vol. 10.
2018 journal article
Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses
Scientific Reports, 8(1).
2018 article
Genome-guided phylo-transcriptomic methods and the nuclear phylogenetic tree of the paniceae grasses (vol 7, 13528, 2017)
Scientific Reports, Vol. 8.
2018 article
Integrating Networks, Phylogenomics, and Population Genomics for the Study of Polyploidy
Blischak, P. D., Mabry, M. E., Conant, G. C., & Pires, J. C. (2018, August 15). Annual Review of Ecology Evolution and Systematics, Vol. 49, pp. 253–278.
2018 article
Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived
Hao, Y., Washburn, J. D., Rosenthal, J., Nielsen, B., Lyons, E., Edger, P. P., … Conant, G. C. (2018, March 1). Genome Biology and Evolution, Vol. 10, pp. 999–1011.
2018 article
Poor feed efficiency in sheep is associated with several structural abnormalities in the community metabolic network of their ruminal microbes1
Patil, R. D., Ellison, M. J., Wolff, S. M., Shearer, C., Wright, A. M., Cockrum, R. R., … al. (2018, May 18). Journal of Animal Science, Vol. 96, pp. 2113–2124.
2018 article
Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
Emery, M., Willis, M. M. S., Hao, Y., Barry, K., Oakgrove, K., Peng, Y., … Conant, G. C. (2018, March 28). PLoS Genetics, Vol. 14.
2018 article
RUMINANT NUTRITION SYMPOSIUM: Tiny but mighty: the role of the rumen microbes in livestock production
Cammack, K. M., Austin, K. J., Lamberson, W. R., Conant, G. C., & Cunningham, H. C. (2018, September 28). Journal of Animal Science, Vol. 96, pp. 4481–4481.
2018 journal article
Tiny but mighty: The role of the rumen microbes in livestock production
Journal of Animal Science, 1.
2017 article
Diet and feed efficiency status affect rumen microbial profiles of sheep
Ellison, M. J., Conant, G. C., Lamberson, W. R., Cockrum, R. R., Austin, K. J., Rule, D. C., & Cammack, K. M. (2017, August 14). Small Ruminant Research, Vol. 156, pp. 12–19.
2017 article
Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome
Wolff, S. M., Ellison, M. J., Hao, Y., Cockrum, R. R., Austin, K. J., Baraboo, M., … Conant, G. C. (2017, June 8). Microbiome, Vol. 5.
2017 article
Effects of evolutionary pressure on histone modifications
Khan, S. M., Conant, G., & Xu, D. (2017, November 1). 2017 Ieee International Conference on Bioinformatics and Biomedicine (Bibm), pp. 2267–2267.
2017 article
Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses
Washburn, J. D., Schnable, J. C., Conant, G. C., Brutnell, T. P., Shao, Y., Zhang, Y., … Pires, J. C. (2017, October 13). Scientific Reports, Vol. 7.
2016 journal article
Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology
International Journal of Plant Sciences, 177(4), 305–318.
Contributors: J. Washburn *, K. Bird *, * & J. Pires *
2016 article
Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes
Pires, J. C., & Conant, G. C. (2016, September 12). Annual Review of Genetics, Vol. 50, pp. 113–131.
2015 article
Patterns of Gene Conversion in Duplicated Yeast Histones Suggest Strong Selection on a Coadapted Macromolecular Complex
Scienski, K., Fay, J. C., & Conant, G. C. (2015, November 11). Genome Biology and Evolution, Vol. 7, pp. 3249–3258.
2015 article
Some assembly required: evolutionary and systems perspectives on the mammalian reproductive system
Mordhorst, B. R., Wilson, M. L., & Conant, G. C. (2015, August 7). Cell and Tissue Research, Vol. 363, pp. 267–278.
Contributors: B. Mordhorst *, M. Wilson * & *
2015 article
Structure, Interaction, and Evolution: Reflections on the Natural History of Proteins
Conant, G. C. (2015, January 1). Evolutionary Biology: Biodiversification from Genotype to Phenotype, pp. 187–201.
2015 article
The butterfly plant arms-race escalated by gene and genome duplications
Edger, P. P., Heidel-Fischer, H. M., Bekaert, M., Rota, J., Glöckner, G., Platts, A. E., … Berenbaum, M. R. (2015, June 22). Proceedings of the National Academy of Sciences, Vol. 112, pp. 8362–8366.
Contributors: P. Edger *, H. Heidel-Fischer*, M. Bekaert *, J. Rota *, G. Glöckner *, A. Platts *, D. Heckel *, J. Der *
2015 article
The players may change but the game remains: network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity
Taxis, T. M., Wolff, S., Gregg, S. J., Minton, N. O., Zhang, C., Dai, J., … Conant, G. C. (2015, September 29). Nucleic Acids Research, Vol. 43, pp. 9600–9612.
Contributors: T. Taxis *, S. Wolff*, S. Gregg*, N. Minton*, C. Zhang *, J. Dai *, R. Schnabel *, J. Taylor *
2014 article
Comparative Genomics as a Time Machine: How Relative Gene Dosage and Metabolic Requirements Shaped the Time-dependent Resolution of Yeast Polyploidy
Conant, G. C. (2014, August 25). Molecular Biology and Evolution, Vol. 31, pp. 3184–3193.
2014 journal article
Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time
Current Opinion in Plant Biology, 19, 91–98.
Contributors: * , J. Birchler * & J. Pires *
2014 article
Gene Duplication and Phenotypic Changes in the Evolution of Mammalian Metabolic Networks
Bekaert, M., & Conant, G. C. (2014, January 28). PLoS ONE, Vol. 9.
Contributors: M. Bekaert * & *
2014 article
Identification and characterization of RING-finger ubiquitin ligase UBR7 in mammalian spermatozoa
Zimmerman, S. W., Yi, Y.-J., Sutovsky, M., Leeuwen, F. W., Conant, G., & Sutovsky, P. (2014, March 24). Cell and Tissue Research, Vol. 356, pp. 261–278.
Contributors: S. Zimmerman*, Y. Yi *, M. Sutovsky*, F. Van Leeuwen*, * & P. Sutovsky *
2014 journal article
Large-Scale Pairwise Alignments on GPU Clusters: Exploring the Implementation Space
Journal of Signal Processing Systems, 77(1-2), 131–149.
2014 article
Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)
Edger, P. P., Tang, M., Bird, K. A., Mayfield, D. R., Conant, G., Mummenhoff, K., … Pires, J. C. (2014, July 1). PLoS ONE, Vol. 9.
Contributors: P. Edger *, M. Tang *, K. Bird *, D. Mayfield*, * , K. Mummenhoff *, M. Koch *, J. Pires *
2014 article
The yeast protein interaction network has a capacity for self‐organization
Dhroso, A., Korkin, D., & Conant, G. C. (2014, June 12). FEBS Journal, Vol. 281, pp. 3420–3432.
Contributors: A. Dhroso *, D. Korkin * & *
2013 article
A Conserved Mammalian Protein Interaction Network
Pérez-Bercoff, Å., Hudson, C. M., & Conant, G. C. (2013, January 2). PLoS ONE, Vol. 8.
Contributors: Å. Pérez-Bercoff*, C. Hudson * & *
2013 article
A distributed CPU-GPU framework for pairwise alignments on large-scale sequence datasets
Li, D., Sajjapongse, K., Truong, H., Conant, G., & Becchi, M. (2013, June 1). Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors, pp. 329–338.
Contributors: D. Li *, K. Sajjapongse*, H. Truong*, * & M. Becchi *
2013 journal article
Diet Alters Both the Structure and Taxonomy of the Ovine Gut Microbial Ecosystem
DNA Research, 21(2), 115–125.
Contributors: M. Ellison *, * , R. Cockrum *, K. Austin*, H. Truong*, M. Becchi* , W. Lamberson *, K. Cammack*
2013 article
Extreme Evolutionary Conservation of Functionally Important Regions in H1N1 Influenza Proteome
Warren, S., Wan, X.-F., Conant, G., & Korkin, D. (2013, November 25). PLoS ONE, Vol. 8.
Contributors: S. Warren*, X. Wan *, * & D. Korkin *
2013 article
Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales
Mayfield-Jones, D., Washburn, J. D., Arias, T., Edger, P. P., Pires, J. C., & Conant, G. C. (2013, March 2). Seminars in Cell and Developmental Biology, Vol. 24, pp. 320–331.
Contributors: D. Mayfield-Jones *, J. Washburn *, T. Arias *, P. Edger *, J. Pires * & *
2012 article
Altered Patterns of Fractionation and Exon Deletions in Brassica rapa Support a Two-Step Model of Paleohexaploidy
Tang, H., Woodhouse, M. R., Cheng, F., Schnable, J. C., Pedersen, B. S., Conant, G., … Pires, J. C. (2012, February 4). Genetics, Vol. 190, pp. 1563–1574.
Contributors: H. Tang *, M. Woodhouse *, F. Cheng *, J. Schnable *, B. Pedersen *, * , X. Wang *, M. Freeling *, J. Pires *
2012 article
Cloning and Characterization of the Peptidoglycan Recognition Protein Genes in the Mosquito,Armigeres subalbatus(Diptera: Culicidae)
Wang, S., Conant, G. C., Ou, R., & Beerntsen, B. T. (2012, May 1). Journal of Medical Entomology, Vol. 49, pp. 656–671.
Contributors: S. Wang *, * , R. Ou* & B. Beerntsen *
2012 article
Long identical multispecies elements in plant and animal genomes
Reneker, J., Lyons, E., Conant, G. C., Pires, J. C., Freeling, M., Shyu, C.-R., & Korkin, D. (2012, April 10). Proceedings of the National Academy of Sciences, Vol. 109.
Contributors: J. Reneker*, E. Lyons *, * , J. Pires *, M. Freeling *, C. Shyu *, D. Korkin *
2012 article
Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis
Bekaert, M., Edger, P. P., Hudson, C. M., Pires, J. C., & Conant, G. C. (2012, September 4). New Phytologist, Vol. 196, pp. 596–605.
Contributors: M. Bekaert *, P. Edger *, C. Hudson *, J. Pires * & *
2012 journal article
Polyploidy and the Evolution of Complex Traits
International Journal of Evolutionary Biology, 2012, 1–12.
2012 article
Very Low Rate of Gene Conversion in the Yeast Genome
Casola, C., Conant, G. C., & Hahn, M. W. (2012, July 27). Molecular Biology and Evolution, Vol. 29, pp. 3817–3826.
Contributors: C. Casola *, * & M. Hahn *
2012 article
Yeast as a Window into Changes in Genome Complexity Due to Polyploidization
Hudson, C. M., & Conant, G. C. (2012, January 1). Polyploidy and Genome Evolution, Vol. 9783642314421, pp. 293–308.
Contributors: C. Hudson * & *
2011 journal article
Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes
BMC Evolutionary Biology, 11(1).
Contributors: C. Hudson * & *
2011 article
Patterns of indirect protein interactions suggest a spatial organization to metabolism
Pérez-Bercoff, Å., McLysaght, A., & Conant, G. C. (2011, January 1). Molecular BioSystems, Vol. 7, pp. 3056–3064.
Contributors: A. Pérez-Bercoff*, A. McLysaght * & *
2011 article
Selection for Higher Gene Copy Number after Different Types of Plant Gene Duplications
Hudson, C. M., Puckett, E. E., Bekaert, M., Pires, J. C., & Conant, G. C. (2011, January 1). Genome Biology and Evolution, Vol. 3, pp. 1369–1380.
Contributors: C. Hudson *, E. Puckett *, M. Bekaert *, J. Pires * & *
2011 journal article
The genome of the mesopolyploid crop species Brassica rapa
Nature Genetics, 43(10), 1035–1039.
2011 article
Transcriptional robustness and protein interactions are associated in yeast
Bekaert, M., & Conant, G. C. (2011, January 1). BMC Systems Biology, Vol. 5.
Contributors: M. Bekaert * & *
2011 article
Two-Phase Resolution of Polyploidy in theArabidopsisMetabolic Network Gives Rise to Relative and Absolute Dosage Constraints
Bekaert, M., Edger, P. P., Pires, J. C., & Conant, G. C. (2011, May 1). The Plant Cell, Vol. 23, pp. 1719–1728.
Contributors: M. Bekaert *, P. Edger *, J. Pires * & *
2010 article
Copy Number Alterations among Mammalian Enzymes Cluster in the Metabolic Network
Bekaert, M., & Conant, G. C. (2010, November 3). Molecular Biology and Evolution, Vol. 28, pp. 1111–1121.
Contributors: M. Bekaert * & *
2010 journal article
Nonrandom survival of gene conversions among yeast ribosomal proteins duplicated through genome doubling.
Genome Biology and Evolution, 2, 826–834. http://www.scopus.com/inward/record.url?eid=2-s2.0-79952199263&partnerID=MN8TOARS
2010 article
The T box regulatory element controlling expression of the class I lysyl-tRNA synthetase of Bacillus cereus strain 14579 is functional and can be partially induced by reduced charging of asparaginyl-tRNAAsn
Foy, N., Jester, B., Conant, G. C., & Devine, K. M. (2010, July 22). BMC Microbiology, Vol. 10.
Contributors: N. Foy*, B. Jester*, * & K. Devine *
2009 article
Neutral evolution on mammalian protein surfaces
Conant, G. C. (2009, August 27). Trends in Genetics, Vol. 25, pp. 377–381.
2009 article
Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast
Conant, G. C. (2009, November 18). Proceedings of the Royal Society B Biological Sciences, Vol. 277, pp. 869–876.
2009 article
Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics
Decker, J. E., Pires, J. C., Conant, G. C., McKay, S. D., Heaton, M. P., Chen, K., … Taylor, J. F. (2009, October 22). Proceedings of the National Academy of Sciences, Vol. 106, pp. 18644–18649.
Contributors: J. Decker, J. Pires, * , S. McKay *, M. Heaton *, K. Chen *, A. Cooper *, J. Vilkki *
2009 article
Solvent Exposure Imparts Similar Selective Pressures across a Range of Yeast Proteins
Conant, G. C., & Stadler, P. F. (2009, February 20). Molecular Biology and Evolution, Vol. 26, pp. 1155–1161.
Contributors: * & P. Stadler *
2008 article
Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens
Powell, A. J., Conant, G. C., Brown, D. E., Carbone, I., & Dean, R. A. (2008, March 28). BMC Genomics, Vol. 9.
Contributors: A. Powell*, * , D. Brown n, I. Carbone n & R. Dean n
2008 article
GenomeVx: simple web-based creation of editable circular chromosome maps
Conant, G. C., & Wolfe, K. H. (2008, January 28). Bioinformatics, Vol. 24, pp. 861–862.
Contributors: * & K. Wolfe *
2008 article
Increased glycolytic flux as an outcome of whole‐genome duplication in yeast
Conant, G. C., & Wolfe, K. H. (2008, January 1). Molecular Systems Biology, Vol. 4.
2008 article
Probabilistic Cross-Species Inference of Orthologous Genomic Regions Created by Whole-Genome Duplication in Yeast
Conant, G. C., & Wolfe, K. H. (2008, June 19). Genetics, Vol. 179, pp. 1681–1692.
Contributors: * & K. Wolfe *
2008 article
Turning a hobby into a job: How duplicated genes find new functions
Conant, G. C., & Wolfe, K. H. (2008, November 18). Nature Reviews Genetics, Vol. 9, pp. 938–950.
Contributors: * & K. Wolfe *
2007 journal article
Increased glycolytic flux as an outcome of whole‐genome duplication in yeast
Molecular Systems Biology, 3(1), 129.
Contributors: * & K. Wolfe *
2007 article
Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication
Scannell, D. R., Frank, A. C., Conant, G. C., Byrne, K. P., Woolfit, M., & Wolfe, K. H. (2007, May 10). Proceedings of the National Academy of Sciences, Vol. 104, pp. 8397–8402.
Contributors: D. Scannell *, A. Frank*, * , K. Byrne *, M. Woolfit* & K. Wolfe *
2006 journal article
Functional Partitioning of Yeast Co-Expression Networks after Genome Duplication
PLoS Biology, 4(4), e109.
Contributors: * & K. Wolfe *
Ed(s): L. Hurst
2006 article
Modeling amino acid substitution patterns in orthologous and paralogous genes
Conant, G. C., Wagner, G. P., & Stadler, P. F. (2006, July 27). Molecular Phylogenetics and Evolution, Vol. 42, pp. 298–307.
Contributors: * , G. Wagner * & P. Stadler *
2005 journal article
The rarity of gene shuffling in conserved genes.
Genome Biology, 6(6). http://www.scopus.com/inward/record.url?eid=2-s2.0-33646556197&partnerID=MN8TOARS
2004 article
A Second‐Generation Genome Screen for Linkage to Type 1 Diabetes in a Bedouin Arab Family
BABU, S. U. N. A. N. D. A. R., CONANT, G. A. V. I. N. C., ELLER, E. L. I. S. E., ROBERTS, C. H. R. I. S. T. I. N. E. M., GOWAN, K. A. T. H. E. R. I. N. E., EISENBARTH, G. E. O. R. G. E. S., … VARDI, P. N. I. N. A. (2004, December 1). Annals of the New York Academy of Sciences, Vol. 1037, pp. 157–160.
Contributors: S. Babu*, * , E. Eller*, C. Roberts *, K. Gowan*, G. Eisenbarth*, P. Fain*, P. Vardi*
2004 article
A fast algorithm for determining the best combination of local alignments to a query sequence
Conant, G. C., & Wagner, A. (2004, May 18). BMC Bioinformatics, Vol. 5.
Contributors: * & A. Wagner *
2004 journal article
Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans
Proceedings of the Royal Society of London. Series B: Biological Sciences, 271(1534), 89–96.
Contributors: * & A. Wagner *
2004 article
Molecular Evolution in Large Genetic Networks: Does Connectivity Equal Constraint?
Hahn, M. W., Conant, G. C., & Wagner, A. (2004, February 1). Journal of Molecular Evolution, Vol. 58, pp. 203–211.
Contributors: M. Hahn *, * & A. Wagner *
2003 article
Asymmetric Sequence Divergence of Duplicate Genes
Conant, G. C., & Wagner, A. (2003, September 1). Genome Research, Vol. 13, pp. 2052–2058.
Contributors: * & A. Wagner *
2003 article
Convergent evolution of gene circuits
Conant, G. C., & Wagner, A. (2003, June 20). Nature Genetics, Vol. 34, pp. 264–266.
Contributors: * & A. Wagner *
2003 article
Parallel Genehunter: implementation of a linkage analysis package for distributed-memory architectures
Conant, G. C., Plimpton, S. J., Old, W., Wagner, A., Fain, P. R., Pacheco, T. R., & Heffelfinger, G. (2003, July 1). Journal of Parallel and Distributed Computing, Vol. 63, pp. 674–682.
Contributors: * , S. Plimpton *, W. Old*, A. Wagner *, P. Fain*, T. Pacheco *, G. Heffelfinger*
2002 journal article
GenomeHistory: A software tool and its application to fully sequenced genomes
Nucleic Acids Research, 30(15), 3378–3386. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036682357&partnerID=MN8TOARS
2002 article
Parallel genehunter: implementation of a linkage analysis package for distributed-memory architectures
Conant, G., Plimpton, S., Old, W., Wagner, A., Fain, P., & Heffelfinger, G. (2002, January 1). Proceedings - International Parallel and Distributed Processing Symposium, IPDPS 2002, pp. 184–191.
Contributors: * , S. Plimpton *, W. Old*, A. Wagner *, P. Fain* & G. Heffelfinger*
2001 journal article
Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference
Molecular Biology and Evolution, 18(6), 1024–1033. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034983477&partnerID=MN8TOARS
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