Works (77)

2020 journal article

A Single, Shared Triploidy in Three Species of Parasitic Nematodes

G3-GENES GENOMES GENETICS, 10(1), 225–233.

By: A. Schoonmaker, Y. Hao, D. Bird & G. Conant

Sources: Web Of Science, ORCID
Added: January 21, 2020

2020 journal article

Baby Genomics: Tracing the Evolutionary Changes That Gave Rise to Placentation

GENOME BIOLOGY AND EVOLUTION, 12(3), 35–47.

By: Y. Hao, H. Lee, M. Baraboo, K. Burch, T. Maurer, J. Somarelli, G. Conant

Sources: Web Of Science, ORCID
Added: June 15, 2020

2020 journal article

The lasting after-effects of an ancient polyploidy on the genomes of teleosts

PLOS ONE, 15(4).

By: G. Conant

Source: ORCID
Added: June 16, 2020

2019 journal article

Functional characterization of SMN evolution in mouse models of SMA

SCIENTIFIC REPORTS, 9.

By: E. Osman, M. Bolding, E. Villalon, K. Kaifer, Z. Lorson, S. Tisdale, Y. Hao, G. Conant ...

Sources: Web Of Science, ORCID
Added: July 22, 2019

2019 journal article

Predicting residual feed intake status using rumen microbial profiles in ewe lambs

JOURNAL OF ANIMAL SCIENCE, 97(7), 2878–2888.

By: M. Ellison, G. Conant, W. Lamberson, K. Austin, E. Kirk, H. Cunningham, D. Rule, K. Cammack

Sources: Web Of Science, ORCID
Added: July 22, 2019

2019 journal article

Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus

NATURE COMMUNICATIONS, 10.

By: H. An, X. Qi, M. Gaynor, Y. Hao, S. Gebken, M. Mabry, A. McAlvay, G. Teakle ...

Sources: Web Of Science, ORCID
Added: July 22, 2019

2018 journal article

Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses

Scientific Reports, 8(1).

By: J. Washburn, J. Schnable, G. Conant, T. Brutnell, Y. Shao, Y. Zhang, M. Ludwig, G. Davidse, J. Pires

Sources: Crossref, ORCID
Added: February 12, 2020

2018 article

Genome-guided phylo-transcriptomic methods and the nuclear phylogenetic tree of the paniceae grasses (vol 7, 13528, 2017)

Scientific Reports, Vol. 8.

By: J. Washburn, J. Schnable, G. Conant, T. Brutnell, Y. Shao, Y. Zhang, M. Ludwig, G. Davidse, J. Pires

Source: NC State University Libraries
Added: August 6, 2018

2018 chapter

Integrating Networks, Phylogenomics, and Population Genomics for the Study of Polyploidy

In ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 49 (Vol. 49, pp. 253–278).

By: P. Blischak, M. Mabry, G. Conant & J. Pires

Sources: NC State University Libraries, ORCID
Added: December 10, 2018

2018 journal article

Patterns of population variation in two paleopolyploid eudicot lineages suggest that dosage-based selection on homeologs is long-lived

Genome Biology and Evolution, 10(3), 999–1011.

By: Y. Hao, J. Washburn, J. Rosenthal, B. Nielsen, E. Lyons, P. Edger, J. Pires, G. Conant

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2018 journal article

Poor feed efficiency in sheep is associated with several structural abnormalities in the community metabolic network of their ruminal microbes

Journal of Animal Science, 96(6), 2113–2124.

By: R. Patil, M. Ellison, S. Wolff, C. Shearer, A. Wright, R. Cockrum, K. Austin, W. Lamberson ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2018 journal article

Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization

PLoS Genetics, 14(3).

By: M. Emery, M. Willis, Y. Hao, K. Barry, K. Oakgrove, Y. Peng, J. Schmutz, E. Lyons ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2018 journal article

RUMINANT NUTRITION SYMPOSIUM: Tiny but mighty: the role of the rumen microbes in livestock production (vol 96, pg 752, 2018)

JOURNAL OF ANIMAL SCIENCE, 96(10), 4481–4481.

By: K. Cammack, K. Austin, W. Lamberson, G. Conant & H. Cunningham

Sources: NC State University Libraries, ORCID
Added: October 16, 2018

2018 journal article

Tiny but mighty: The role of the rumen microbes in livestock production

Journal of Animal Science, 1.

By: K. Cammack, K. Austin, W. Lamberson, G. Conant & H. Cunningham

Sources: Crossref, ORCID
Added: September 28, 2019

2017 journal article

Diet and feed efficiency status affect rumen microbial profiles of sheep

Small Ruminant Research, 156, 12–19.

By: M. Ellison, G. Conant, W. Lamberson, R. Cockrum, K. Austin, D. Rule, K. Cammack

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2017 journal article

Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome

Microbiome, 5.

By: S. Wolff, M. Ellison, Y. Hao, R. Cockrum, K. Austin, M. Baraboo, K. Burch, H. Lee ...

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2017 conference paper

Effects of evolutionary pressure on histone modifications

2017 ieee international conference on bioinformatics and biomedicine (bibm), 2267–2267.

By: S. Khan, G. Conant & D. Xu

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2017 journal article

Genome-guided phylo-transcriptomic methods and the nuclear phylogentic tree of the Paniceae grasses

Scientific Reports, 7.

By: J. Washburn, J. Schnable, G. Conant, T. Brutnell, Y. Shao, Y. Zhang, M. Ludwig, G. Davidse, J. Pires

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2016 journal article

Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology

International Journal of Plant Sciences, 177(4), 305–318.

By: J. Washburn, K. Bird, G. Conant & J. Pires

Sources: ORCID, Crossref
Added: September 12, 2019

2016 book

Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes

In Annual Review of Genetics (Vol. 50, pp. 113–131).

By: J. Pires & G. Conant

Source: ORCID
Added: September 12, 2019

2016 journal article

Some assembly required: evolutionary and systems perspectives on the mammalian reproductive system

Cell and Tissue Research, 363(1), 267–278.

By: B. Mordhorst, M. Wilson & G. Conant

Source: ORCID
Added: September 12, 2019

2015 journal article

Patterns of gene conversion in duplicated yeast histones suggest strong selection on a coadapted macromolecular complex

Genome Biology and Evolution, 7(12), 3249–3258.

By: K. Scienski, J. Fay & G. Conant

Source: ORCID
Added: September 12, 2019

2015 book

Structure, interaction, and evolution: Reflections on the natural history of proteins

In Evolutionary Biology: Biodiversification from Genotype to Phenotype (pp. 187–201).

By: G. Conant

Source: ORCID
Added: September 12, 2019

2015 journal article

The butterfly plant arms-race escalated by gene and genome duplications

Proceedings of the National Academy of Sciences of the United States of America, 112(27), 8362–8366.

By: P. Edger, H. Heidel-Fischer, M. Bekaert, J. Rota, G. Glöckner, A. Platts, D. Heckel, J. Der ...

Source: ORCID
Added: September 12, 2019

2015 journal article

The players may change but the game remains: Network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity

Nucleic Acids Research, 43(20), 9600–9612.

By: T. Taxis, S. Wolff, S. Gregg, N. Minton, C. Zhang, J. Dai, R. Schnabel, J. Taylor ...

Source: ORCID
Added: September 12, 2019

2014 journal article

Comparative genomics as a time machine: How relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy

Molecular Biology and Evolution, 31(12), 3184–3193.

By: G. Conant

Source: ORCID
Added: September 12, 2019

2014 journal article

Diet alters both the structure and taxonomy of the ovine gut microbial ecosystem

DNA Research, 21(2), 115–125.

By: M. Ellison, G. Conant, R. Cockrum, K. Austin, H. Truong, M. Becchi, W. Lamberson, K. Cammack

Source: ORCID
Added: September 12, 2019

2014 journal article

Dosage, duplication, and diploidization: Clarifying the interplay of multiple models for duplicate gene evolution over time

Current Opinion in Plant Biology, 19, 91–98.

By: G. Conant, J. Birchler & J. Pires

Source: ORCID
Added: September 12, 2019

2014 journal article

Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks

PLoS ONE, 9(1).

By: M. Bekaert & G. Conant

Source: ORCID
Added: September 12, 2019

2014 journal article

Identification and characterization of RING-finger ubiquitin ligase UBR7 in mammalian spermatozoa

Cell and Tissue Research, 356(1), 261–278.

By: S. Zimmerman, Y. Yi, M. Sutovsky, F. Van Leeuwen, G. Conant & P. Sutovsky

Source: ORCID
Added: September 12, 2019

2014 journal article

Large-Scale Pairwise Alignments on GPU Clusters: Exploring the Implementation Space

Journal of Signal Processing Systems, 77(1-2), 131–149.

By: H. Truong, D. Li, K. Sajjapongse, G. Conant & M. Becchi

Source: ORCID
Added: September 12, 2019

2014 journal article

Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the brassicaceae (mustards)

PLoS ONE, 9(7).

By: P. Edger, M. Tang, K. Bird, D. Mayfield, G. Conant, K. Mummenhoff, M. Koch, J. Pires

Source: ORCID
Added: September 12, 2019

2014 journal article

The yeast protein interaction network has a capacity for self-organization

FEBS Journal, 281(15), 3420–3432.

By: A. Dhroso, D. Korkin & G. Conant

Source: ORCID
Added: September 12, 2019

2013 journal article

A Conserved Mammalian Protein Interaction Network

PLoS ONE, 8(1).

Source: ORCID
Added: September 12, 2019

2013 conference paper

A distributed CPU-GPU framework for pairwise alignments on large-scale sequence datasets

Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors, 329–338.

By: D. Li, K. Sajjapongse, H. Truong, G. Conant & M. Becchi

Source: ORCID
Added: September 12, 2019

2013 journal article

Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome

PLoS ONE, 8(11).

By: S. Warren, X. Wan, G. Conant & D. Korkin

Source: ORCID
Added: September 12, 2019

2013 journal article

Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales

Seminars in Cell and Developmental Biology, 24(4), 320–331.

By: D. Mayfield-Jones, J. Washburn, T. Arias, P. Edger, J. Pires & G. Conant

Source: ORCID
Added: September 12, 2019

2012 journal article

Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy

Genetics, 190(4), 1563–1574.

By: H. Tang, M. Woodhouse, F. Cheng, J. Schnable, B. Pedersen, G. Conant, X. Wang, M. Freeling, J. Pires

Source: ORCID
Added: September 12, 2019

2012 journal article

Cloning and characterization of the peptidoglycan recognition protein genes in the mosquito, Armigeres subalbatus (Diptera: Culicidae)

Journal of Medical Entomology, 49(3), 656–671.

By: S. Wang, G. Conant, R. Ou & B. Beerntsen

Source: ORCID
Added: September 12, 2019

2012 journal article

Long identical multispecies elements in plant and animal genomes

Proceedings of the National Academy of Sciences of the United States of America, 109(19).

By: J. Reneker, E. Lyons, G. Conant, J. Pires, M. Freeling, C. Shyu, D. Korkin

Source: ORCID
Added: September 12, 2019

2012 journal article

Metabolic and evolutionary costs of herbivory defense: Systems biology of glucosinolate synthesis

New Phytologist, 196(2), 596–605.

By: M. Bekaert, P. Edger, C. Hudson, J. Pires & G. Conant

Source: ORCID
Added: September 12, 2019

2012 journal article

Polyploidy and the Evolution of Complex Traits

International Journal of Evolutionary Biology, 2012, 1–12.

By: L. Huminiecki & G. Conant

Sources: Crossref, ORCID
Added: November 17, 2019

2012 journal article

Very low rate of gene conversion in the yeast genome

Molecular Biology and Evolution, 29(12), 3817–3826.

By: C. Casola, G. Conant & M. Hahn

Source: ORCID
Added: September 12, 2019

2012 book

Yeast as a window into changes in genome complexity due to polyploidization

In Polyploidy and Genome Evolution (Vol. 9783642314421, pp. 293–308).

By: C. Hudson & G. Conant

Source: ORCID
Added: September 12, 2019

2011 journal article

Copy number alterations among mammalian enzymes cluster in the metabolic network

Molecular Biology and Evolution, 28(2), 1111–1121.

By: M. Bekaert & G. Conant

Source: ORCID
Added: September 12, 2019

2011 journal article

Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes

BMC Evolutionary Biology, 11(1).

By: C. Hudson & G. Conant

Sources: ORCID, Crossref
Added: September 12, 2019

2011 journal article

Patterns of indirect protein interactions suggest a spatial organization to metabolism

Molecular BioSystems, 7(11), 3056–3064.

By: A. Pérez-Bercoff, A. McLysaght & G. Conant

Source: ORCID
Added: September 12, 2019

2011 journal article

Selection for higher gene copy number after different types of plant gene duplications

Genome Biology and Evolution, 3(1), 1369–1380.

By: C. Hudson, E. Puckett, M. Bekaert, J. Pires & G. Conant

Source: ORCID
Added: September 12, 2019

2011 journal article

The genome of the mesopolyploid crop species Brassica rapa

Nature Genetics, 43(10), 1035–1039.

By: X. Wang, H. Wang, J. Wang, R. Sun, J. Wu, S. Liu, Y. Bai, J. Mun ...

Sources: ORCID, Crossref
Added: September 12, 2019

2011 journal article

Transcriptional robustness and protein interactions are associated in yeast

BMC Systems Biology, 5.

By: M. Bekaert & G. Conant

Source: ORCID
Added: September 12, 2019

2011 journal article

Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints

Plant Cell, 23(5), 1719–1728.

By: M. Bekaert, P. Edger, J. Chris Pires & G. Conant

Source: ORCID
Added: September 12, 2019

2010 journal article

Nonrandom survival of gene conversions among yeast ribosomal proteins duplicated through genome doubling.

Genome Biology and Evolution, 2, 826–834.

By: A. Evangelisti & G. Conant

Source: ORCID
Added: September 12, 2019

2010 journal article

Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast

Proceedings of the Royal Society B: Biological Sciences, 277(1683), 869–876.

By: G. Conant

Source: ORCID
Added: September 12, 2019

2010 journal article

The T box regulatory element controlling expression of the class i lysyl-tRNA synthetase of Bacillus cereus strain 14579 is functional and can be partially induced by reduced charging of asparaginyl-tRNAAsn

BMC Microbiology, 10.

By: N. Foy, B. Jester, G. Conant & K. Devine

Source: ORCID
Added: September 12, 2019

2009 journal article

Neutral evolution on mammalian protein surfaces

Trends in Genetics, 25(9), 377–381.

By: G. Conant

Source: ORCID
Added: September 12, 2019

2009 journal article

Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics

Proceedings of the National Academy of Sciences of the United States of America, 106(44), 18644–18649.

By: J. Decker, J. Pires, G. Conant, S. McKay, M. Heaton, K. Chen, A. Cooper, J. Vilkki ...

Source: ORCID
Added: September 12, 2019

2009 journal article

Solvent exposure imparts similar selective pressures across a range of yeast proteins

Molecular Biology and Evolution, 26(5), 1155–1161.

By: G. Conant & P. Stadler

Source: ORCID
Added: September 12, 2019

2008 journal article

Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

BMC Genomics, 9.

By: A. Powell, G. Conant, D. Brown, I. Carbone & R. Dean

Source: ORCID
Added: September 12, 2019

2008 journal article

GenomeVx: Simple web-based creation of editable circular chromosome maps

Bioinformatics, 24(6), 861–862.

By: G. Conant & K. Wolfe

Source: ORCID
Added: September 12, 2019

2008 journal article

Increased glycolytic flux as an outcome of whole-genome duplication in yeast (Molecular Systems Biology (2007) 3 (129) DOI: 10.1038/msb4100170)

Molecular Systems Biology, 4.

By: G. Conant & K. Wolfe

Source: ORCID
Added: September 12, 2019

2008 journal article

Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast

Genetics, 179(3), 1681–1692.

By: G. Conant & K. Wolfe

Source: ORCID
Added: September 12, 2019

2008 journal article

Turning a hobby into a job: How duplicated genes find new functions

Nature Reviews Genetics, 9(12), 938–950.

By: G. Conant & K. Wolfe

Source: ORCID
Added: September 12, 2019

2007 journal article

Increased glycolytic flux as an outcome of whole‐genome duplication in yeast

Molecular Systems Biology, 3(1), 129.

By: G. Conant & K. Wolfe

Sources: ORCID, Crossref
Added: September 12, 2019

2007 journal article

Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication

Proceedings of the National Academy of Sciences of the United States of America, 104(20), 8397–8402.

By: D. Scannell, A. Frank, G. Conant, K. Byrne, M. Woolfit & K. Wolfe

Source: ORCID
Added: September 12, 2019

2007 journal article

Modeling amino acid substitution patterns in orthologous and paralogous genes

Molecular Phylogenetics and Evolution, 42(2), 298–307.

By: G. Conant, G. Wagner & P. Stadler

Source: ORCID
Added: September 12, 2019

2006 journal article

Functional Partitioning of Yeast Co-Expression Networks after Genome Duplication

PLoS Biology, 4(4), e109.

By: G. Conant & K. Wolfe

Ed(s): L. Hurst

Sources: ORCID, Crossref
Added: September 12, 2019

2005 journal article

The rarity of gene shuffling in conserved genes.

Genome Biology, 6(6).

By: G. Conant & A. Wagner

Source: ORCID
Added: September 12, 2019

2004 journal article

A fast algorithm for determining the best combination of local alignments to a query sequence

BMC Bioinformatics, 5.

By: G. Conant & A. Wagner

Source: ORCID
Added: September 12, 2019

2004 book

A second-generation genome screen for linkage to type 1 diabetes in a Bedouin Arab family

In Annals of the New York Academy of Sciences (Vol. 1037, pp. 157–160).

By: S. Babu, G. Conant, E. Eller, C. Roberts, K. Gowan, G. Eisenbarth, P. Fain, P. Vardi

Source: ORCID
Added: September 12, 2019

2004 journal article

Duplicate genes and robustness to transient gene knock-downs in Caenorhabditis elegans

Proceedings of the Royal Society of London. Series B: Biological Sciences, 271(1534), 89–96.

By: G. Conant & A. Wagner

Sources: ORCID, Crossref
Added: September 12, 2019

2004 journal article

Molecular Evolution in Large Genetic Networks: Does Connectivity Equal Constraint?

Journal of Molecular Evolution, 58(2), 203–211.

By: M. Hahn, G. Conant & A. Wagner

Source: ORCID
Added: September 12, 2019

2003 journal article

Asymmetric sequence divergence of duplicate genes

Genome Research, 13(9), 2052–2058.

By: G. Conant & A. Wagner

Source: ORCID
Added: September 12, 2019

2003 journal article

Convergent evolution of gene circuits

Nature Genetics, 34(3), 264–266.

By: G. Conant & A. Wagner

Source: ORCID
Added: September 12, 2019

2003 journal article

Parallel genehunter: Implementation of linkage analysis package for distributed-memory architectures

Journal of Parallel and Distributed Computing, 63(7-8), 674–682.

By: G. Conant, S. Plimpton, W. Old, A. Wagner, P. Fain, T. Pacheco, G. Heffelfinger

Source: ORCID
Added: September 12, 2019

2002 journal article

GenomeHistory: A software tool and its application to fully sequenced genomes

Nucleic Acids Research, 30(15), 3378–3386.

By: G. Conant & A. Wagner

Source: ORCID
Added: September 12, 2019

2002 conference paper

Parallel genehunter: Implementation of a linkage analysis package for distributed-memory architectures

Proceedings - International Parallel and Distributed Processing Symposium, IPDPS 2002, 184–191.

By: G. Conant, S. Plimpton, W. Old, A. Wagner, P. Fain & G. Heffelfinger

Source: ORCID
Added: September 12, 2019

2001 journal article

Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference

Molecular Biology and Evolution, 18(6), 1024–1033.

By: G. Conant & P. Lewis

Source: ORCID
Added: September 12, 2019