Gavin Conant

An, H., Pires, J. C., & Conant, G. C. (2024). Gene expression bias between the subgenomes of allopolyploid hybrids is an emergent property of the kinetics of expression. PLOS COMPUTATIONAL BIOLOGY, 20(1). https://doi.org/10.1371/journal.pcbi.1011803

Mabry, M. E., Abrahams, R. S., Al-Shehbaz, I. A., Baker, W. J., Barak, S., Barker, M. S., … Harkess, A. E. (2023, October 12). Complementing model species with model clades. PLANT CELL, Vol. 10. https://doi.org/10.1093/plcell/koad260

Yang, Y., Xu, T., Conant, G., Kishino, H., Thorne, J. L., & Ji, X. (2023). Interlocus Gene Conversion, Natural Selection, and Paralog Homogenization. MOLECULAR BIOLOGY AND EVOLUTION, 40(9). https://doi.org/10.1093/molbev/msad198

Conant, G. C. (2023). POInT: Modeling Polyploidy in the Era of Ubiquitous Genomics. POLYPLOIDY, pp. 77–90. https://doi.org/10.1007/978-1-0716-2561-3_4

Siddiqui, M., & Conant, G. C. C. (2023). POInTbrowse: orthology prediction and synteny exploration for paleopolyploid genomes. BMC BIOINFORMATICS, 24(1). https://doi.org/10.1186/s12859-023-05298-w

Hao, Y., Fleming, J., Petterson, J., Lyons, E., Edger, P. P., Pires, J. C., … Conant, G. C. (2022, May 10). Convergent evolution of polyploid genomes from across the eukaryotic tree of life. G3-GENES GENOMES GENETICS, Vol. 5. https://doi.org/10.1093/g3journal/jkac094

McRae, L., Beric, A., & Conant, G. C. (2022). Hybridization order is not the driving factor behind biases in duplicate gene losses among the hexaploid Solanaceae. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 289(1985). https://doi.org/10.1098/rspb.2022.1810

Patil, R. D., Ellison, M. J., Austin, K. J., Lamberson, W. R., Cammack, K. M., & Conant, G. C. (2021). A metagenomic analysis of the effect of antibiotic feed additives on the ovine rumen metabolism. SMALL RUMINANT RESEARCH, 205. https://doi.org/10.1016/j.smallrumres.2021.106539

Beric, A., Mabry, M. E., Harkess, A. E., Brose, J., Schranz, M. E., Conant, G. C., … Pires, J. C. (2021). Comparative phylogenetics of repetitive elements in a diverse order of flowering plants (Brassicales). G3-GENES GENOMES GENETICS, 11(7). https://doi.org/10.1093/g3journal/jkab140

Washburn, J. D., Strable, J., Dickinson, P., Kothapalli, S. S., Brose, J. M., Covshoff, S., … Pires, J. C. (2021). Distinct C-4 sub-types and C-3 bundle sheath isolation in the Paniceae grasses. PLANT DIRECT, 5(12). https://doi.org/10.1002/pld3.373

Qi, X., An, H., Hall, T. E., Di, C., Blischak, P. D., McKibben, M. T. W., … Barker, M. S. (2021). Genes derived from ancient polyploidy have higher genetic diversity and are associated with domestication in Brassica rapa. NEW PHYTOLOGIST, 230(1), 372–386. https://doi.org/10.1111/nph.17194

Hao, Y., Mabry, M. E., Edger, P. P., Freeling, M., Zheng, C., Jin, L., … Conant, G. C. (2021). The contributions from the progenitor genomes of the mesopolyploid Brassiceae are evolutionarily distinct but functionally compatible. GENOME RESEARCH, 31(5), 799–810. https://doi.org/10.1101/gr.270033.120

Schoonmaker, A., Hao, Y., Bird, D. M. K., & Conant, G. C. (2020). A Single, Shared Triploidy in Three Species of Parasitic Nematodes. G3-GENES GENOMES GENETICS, 10(1), 225–233. https://doi.org/10.1534/g3.119.400650

Hao, Y., Lee, H. J., Baraboo, M., Burch, K., Maurer, T., Somarelli, J. A., & Conant, G. C. (2020). Baby Genomics: Tracing the Evolutionary Changes That Gave Rise to Placentation. GENOME BIOLOGY AND EVOLUTION, 12(3), 35–47. https://doi.org/10.1093/gbe/evaa026

Mabry, M. E., Brose, J. M., Blischak, P. D., Sutherland, B., Dismukes, W. T., Bottoms, C. A., … Pires, J. C. (2020). Phylogeny and multiple independent whole-genome duplication events in the Brassicales. AMERICAN JOURNAL OF BOTANY, 107(8), 1148–1164. https://doi.org/10.1002/ajb2.1514

Conant, G. C. (2020). The lasting after-effects of an ancient polyploidy on the genomes of teleosts. PLOS ONE, 15(4). https://doi.org/10.1371/journal.pone.0231356

Osman, E. Y., Bolding, M. R., Villalon, E., Kaifer, K. A., Lorson, Z. C., Tisdale, S., … Lorson, C. L. (2019). Functional characterization of SMN evolution in mouse models of SMA. SCIENTIFIC REPORTS, 9. https://doi.org/10.1038/s41598-019-45822-8

Ellison, M. J., Conant, G. C., Lamberson, W. R., Austin, K. J., Kirk, E., Cunningham, H. C., … Cammack, K. M. (2019). Predicting residual feed intake status using rumen microbial profiles in ewe lambs. JOURNAL OF ANIMAL SCIENCE, 97(7), 2878–2888. https://doi.org/10.1093/jas/skz170

An, H., Qi, X., Gaynor, M. L., Hao, Y., Gebken, S. C., Mabry, M. E., … Pires, J. C. (2019). Transcriptome and organellar sequencing highlights the complex origin and diversification of allotetraploid Brassica napus. NATURE COMMUNICATIONS, 10. https://doi.org/10.1038/s41467-019-10757-1

Washburn, J. D., Schnable, J. C., Conant, G. C., Brutnell, T. P., Shao, Y., Zhang, Y., … Pires, J. C. (2018). Author Correction: Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogenetic Tree of the Paniceae Grasses. Scientific Reports, 8(1). https://doi.org/10.1038/S41598-018-25620-4

Washburn, J. D., Schnable, J. C., Conant, G. C., Brutnell, T. P., Shao, Y., Zhang, Y., … Pires, J. C. (2018). Genome-guided phylo-transcriptomic methods and the nuclear phylogenetic tree of the paniceae grasses (vol 7, 13528, 2017). Scientific Reports, Vol. 8.

Blischak, P. D., Mabry, M. E., Conant, G. C., & Pires, J. C. (2018). Integrating Networks, Phylogenomics, and Population Genomics for the Study of Polyploidy. ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 49, Vol. 49, pp. 253–278. https://doi.org/10.1146/annurev-ecolsys-121415-032302

Hao, Y., Washburn, J. D., Rosenthal, J., Nielsen, B., Lyons, E., Edger, P. P., … Conant, G. C. (2018). Patterns of Population Variation in Two Paleopolyploid Eudicot Lineages Suggest That Dosage-Based Selection on Homeologs Is Long-Lived. GENOME BIOLOGY AND EVOLUTION, 10(3), 999–1011. https://doi.org/10.1093/gbe/evy061

Patil, R. D., Ellison, M. J., Wolff, S. M., Shearer, C., Wright, A. M., Cockrum, R. R., … al. (2018). Poor feed efficiency in sheep is associated with several structural abnormalities in the community metabolic network of their ruminal microbes. JOURNAL OF ANIMAL SCIENCE, 96(6), 2113–2124. https://doi.org/10.1093/jas/sky096

Emery, M., Willis, M. M. S., Hao, Y., Barry, K., Oakgrove, K., Peng, Y., … Conant, G. C. (2018). Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization. PLOS GENETICS, 14(3). https://doi.org/10.1371/journal.pgen.1007267

Cammack, K. M., Austin, K. J., Lamberson, W. R., Conant, G. C., & Cunningham, H. C. (2018, October). RUMINANT NUTRITION SYMPOSIUM: Tiny but mighty: the role of the rumen microbes in livestock production (vol 96, pg 752, 2018). JOURNAL OF ANIMAL SCIENCE, Vol. 96, pp. 4481–4481. https://doi.org/10.1093/jas/sky331

Cammack, K. M., Austin, K. J., Lamberson, W. R., Conant, G. C., & Cunningham, H. C. (2018). Tiny but mighty: The role of the rumen microbes in livestock production. Journal of Animal Science, 1. https://doi.org/10.1093/jas/skx053

Ellison, M. J., Conant, G. C., Lamberson, W. R., Cockrum, R. R., Austin, K. J., Rule, D. C., & Cammack, K. M. (2017). Diet and feed efficiency status affect rumen microbial profiles of sheep. SMALL RUMINANT RESEARCH, 156, 12–19. https://doi.org/10.1016/j.smallrumres.2017.08.009

Wolff, S. M., Ellison, M. J., Hao, Y., Cockrum, R. R., Austin, K. J., Baraboo, M., … Conant, G. C. (2017). Diet shifts provoke complex and variable changes in the metabolic networks of the ruminal microbiome. MICROBIOME, 5. https://doi.org/10.1186/s40168-017-0274-6

Khan, S. M., Conant, G., & Xu, D. (2017). Effects of evolutionary pressure on histone modifications. 2017 ieee international conference on bioinformatics and biomedicine (bibm), 2267–2267. https://doi.org/10.1109/bibm.2017.8218019

Washburn, J. D., Schnable, J. C., Conant, G. C., Brutnell, T. P., Shao, Y., Zhang, Y., … Pires, J. C. (2017). Genome-Guided Phylo-Transcriptomic Methods and the Nuclear Phylogentic Tree of the Paniceae Grasses. SCIENTIFIC REPORTS, 7. https://doi.org/10.1038/s41598-017-13236-z

Washburn, J. D., Bird, K. A., Conant, G. C., & Pires, J. C. (2016). Convergent Evolution and the Origin of Complex Phenotypes in the Age of Systems Biology. International Journal of Plant Sciences, 177(4), 305–318. https://doi.org/10.1086/686009

Pires, J. C., & Conant, G. C. (2016). Robust Yet Fragile: Expression Noise, Protein Misfolding, and Gene Dosage in the Evolution of Genomes. In Annual Review of Genetics (Vol. 50, pp. 113–131). https://doi.org/10.1146/annurev-genet-120215-035400

Mordhorst, B. R., Wilson, M. L., & Conant, G. C. (2016). Some assembly required: evolutionary and systems perspectives on the mammalian reproductive system. Cell and Tissue Research, 363(1), 267–278. https://doi.org/10.1007/s00441-015-2257-x

Scienski, K., Fay, J. C., & Conant, G. C. (2015). Patterns of gene conversion in duplicated yeast histones suggest strong selection on a coadapted macromolecular complex. Genome Biology and Evolution, 7(12), 3249–3258. https://doi.org/10.1093/gbe/evv216

Conant, G. C. (2015). Structure, interaction, and evolution: Reflections on the natural history of proteins. In Evolutionary Biology: Biodiversification from Genotype to Phenotype (pp. 187–201). https://doi.org/10.1007/978-3-319-19932-0_10

Edger, P. P., Heidel-Fischer, H. M., Bekaert, M., Rota, J., Glöckner, G., Platts, A. E., … Berenbaum, M. R. (2015). The butterfly plant arms-race escalated by gene and genome duplications. Proceedings of the National Academy of Sciences of the United States of America, 112(27), 8362–8366. https://doi.org/10.1073/pnas.1503926112

Taxis, T. M., Wolff, S., Gregg, S. J., Minton, N. O., Zhang, C., Dai, J., … Conant, G. C. (2015). The players may change but the game remains: Network analyses of ruminal microbiomes suggest taxonomic differences mask functional similarity. Nucleic Acids Research, 43(20), 9600–9612. https://doi.org/10.1093/nar/gkv973

Conant, G. C. (2014). Comparative genomics as a time machine: How relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy. Molecular Biology and Evolution, 31(12), 3184–3193. https://doi.org/10.1093/molbev/msu250

Conant, G. C., Birchler, J. A., & Pires, J. C. (2014). Dosage, duplication, and diploidization: clarifying the interplay of multiple models for duplicate gene evolution over time. Current Opinion in Plant Biology, 19, 91–98. https://doi.org/10.1016/j.pbi.2014.05.008

Bekaert, M., & Conant, G. C. (2014). Gene duplication and phenotypic changes in the evolution of mammalian metabolic networks. PLoS ONE, 9(1). https://doi.org/10.1371/journal.pone.0087115

Zimmerman, S. W., Yi, Y.-J., Sutovsky, M., Van Leeuwen, F. W., Conant, G., & Sutovsky, P. (2014). Identification and characterization of RING-finger ubiquitin ligase UBR7 in mammalian spermatozoa. Cell and Tissue Research, 356(1), 261–278. https://doi.org/10.1007/s00441-014-1808-x

Truong, H., Li, D., Sajjapongse, K., Conant, G., & Becchi, M. (2014). Large-Scale Pairwise Alignments on GPU Clusters: Exploring the Implementation Space. Journal of Signal Processing Systems, 77(1-2), 131–149. https://doi.org/10.1007/s11265-014-0883-2

Edger, P. P., Tang, M., Bird, K. A., Mayfield, D. R., Conant, G., Mummenhoff, K., … Pires, J. C. (2014). Secondary structure analyses of the nuclear rRNA internal transcribed spacers and assessment of its phylogenetic utility across the brassicaceae (mustards). PLoS ONE, 9(7). https://doi.org/10.1371/journal.pone.0101341

Dhroso, A., Korkin, D., & Conant, G. C. (2014). The yeast protein interaction network has a capacity for self-organization. FEBS Journal, 281(15), 3420–3432. https://doi.org/10.1111/febs.12870

A Conserved Mammalian Protein Interaction Network. (2013). PLoS ONE, 8(1). https://doi.org/10.1371/journal.pone.0052581

Li, D., Sajjapongse, K., Truong, H., Conant, G., & Becchi, M. (2013). A distributed CPU-GPU framework for pairwise alignments on large-scale sequence datasets. Proceedings of the International Conference on Application-Specific Systems, Architectures and Processors, 329–338. https://doi.org/10.1109/ASAP.2013.6567598

Ellison, M. J., Conant, G. C., Cockrum, R. R., Austin, K. J., Truong, H., Becchi, M., … Cammack, K. M. (2013). Diet Alters Both the Structure and Taxonomy of the Ovine Gut Microbial Ecosystem. DNA Research, 21(2), 115–125. https://doi.org/10.1093/dnares/dst044

Warren, S., Wan, X.-F., Conant, G., & Korkin, D. (2013). Extreme evolutionary conservation of functionally important regions in H1N1 influenza proteome. PLoS ONE, 8(11). https://doi.org/10.1371/journal.pone.0081027

Mayfield-Jones, D., Washburn, J. D., Arias, T., Edger, P. P., Pires, J. C., & Conant, G. C. (2013). Watching the grin fade: Tracing the effects of polyploidy on different evolutionary time scales. Seminars in Cell and Developmental Biology, 24(4), 320–331. https://doi.org/10.1016/j.semcdb.2013.02.002

Tang, H., Woodhouse, M. R., Cheng, F., Schnable, J. C., Pedersen, B. S., Conant, G., … Pires, J. C. (2012). Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy. Genetics, 190(4), 1563–1574. https://doi.org/10.1534/genetics.111.137349

Wang, S., Conant, G. C., Ou, R., & Beerntsen, B. T. (2012). Cloning and characterization of the peptidoglycan recognition protein genes in the mosquito, Armigeres subalbatus (Diptera: Culicidae). Journal of Medical Entomology, 49(3), 656–671. https://doi.org/10.1603/ME11165

Reneker, J., Lyons, E., Conant, G. C., Pires, J. C., Freeling, M., Shyu, C.-R., & Korkin, D. (2012). Long identical multispecies elements in plant and animal genomes. Proceedings of the National Academy of Sciences of the United States of America, 109(19). https://doi.org/10.1073/pnas.1121356109

Bekaert, M., Edger, P. P., Hudson, C. M., Pires, J., & Conant, G. C. (2012). Metabolic and evolutionary costs of herbivory defense: Systems biology of glucosinolate synthesis. New Phytologist, 196(2), 596–605. https://doi.org/10.1111/j.1469-8137.2012.04302.x

Huminiecki, L., & Conant, G. C. (2012). Polyploidy and the Evolution of Complex Traits. International Journal of Evolutionary Biology, 2012, 1–12. https://doi.org/10.1155/2012/292068

Casola, C., Conant, G. C., & Hahn, M. W. (2012). Very low rate of gene conversion in the yeast genome. Molecular Biology and Evolution, 29(12), 3817–3826. https://doi.org/10.1093/molbev/mss192

Hudson, C. M., & Conant, G. C. (2012). Yeast as a window into changes in genome complexity due to polyploidization. In Polyploidy and Genome Evolution (Vol. 9783642314421, pp. 293–308). https://doi.org/10.1007/978-3-642-31442-1_15

Bekaert, M., & Conant, G. C. (2011). Copy number alterations among mammalian enzymes cluster in the metabolic network. Molecular Biology and Evolution, 28(2), 1111–1121. https://doi.org/10.1093/molbev/msq296

Hudson, C. M., & Conant, G. C. (2011). Expression level, cellular compartment and metabolic network position all influence the average selective constraint on mammalian enzymes. BMC Evolutionary Biology, 11(1). https://doi.org/10.1186/1471-2148-11-89

Pérez-Bercoff, A., McLysaght, A., & Conant, G. C. (2011). Patterns of indirect protein interactions suggest a spatial organization to metabolism. Molecular BioSystems, 7(11), 3056–3064. https://doi.org/10.1039/c1mb05168g

Hudson, C. M., Puckett, E. E., Bekaert, M., Pires, J. C., & Conant, G. C. (2011). Selection for higher gene copy number after different types of plant gene duplications. Genome Biology and Evolution, 3(1), 1369–1380. https://doi.org/10.1093/gbe/evr115

Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., … Zhang, Z. (2011). The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics, 43(10), 1035–1039. https://doi.org/10.1038/ng.919

Bekaert, M., & Conant, G. C. (2011). Transcriptional robustness and protein interactions are associated in yeast. BMC Systems Biology, 5. https://doi.org/10.1186/1752-0509-5-62

Bekaert, M., Edger, P. P., Chris Pires, J., & Conant, G. C. (2011). Two-phase resolution of polyploidy in the Arabidopsis metabolic network gives rise to relative and absolute dosage constraints. Plant Cell, 23(5), 1719–1728. https://doi.org/10.1105/tpc.110.081281

Evangelisti, A. M., & Conant, G. C. (2010). Nonrandom survival of gene conversions among yeast ribosomal proteins duplicated through genome doubling. Genome Biology and Evolution, 2, 826–834. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-79952199263&partnerID=MN8TOARS

Conant, G. C. (2010). Rapid reorganization of the transcriptional regulatory network after genome duplication in yeast. Proceedings of the Royal Society B: Biological Sciences, 277(1683), 869–876. https://doi.org/10.1098/rspb.2009.1592

Foy, N., Jester, B., Conant, G. C., & Devine, K. M. (2010). The T box regulatory element controlling expression of the class i lysyl-tRNA synthetase of Bacillus cereus strain 14579 is functional and can be partially induced by reduced charging of asparaginyl-tRNA<sup>Asn</sup>. BMC Microbiology, 10. https://doi.org/10.1186/1471-2180-10-196

Conant, G. C. (2009). Neutral evolution on mammalian protein surfaces. Trends in Genetics, 25(9), 377–381. https://doi.org/10.1016/j.tig.2009.07.004

Decker, J. E., Pires, J. C., Conant, G. C., McKay, S. D., Heaton, M. P., Chen, K., … Taylor, J. F. (2009). Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics. Proceedings of the National Academy of Sciences of the United States of America, 106(44), 18644–18649. https://doi.org/10.1073/pnas.0904691106

Conant, G. C., & Stadler, P. F. (2009). Solvent exposure imparts similar selective pressures across a range of yeast proteins. Molecular Biology and Evolution, 26(5), 1155–1161. https://doi.org/10.1093/molbev/msp031

Powell, A. J., Conant, G. C., Brown, D. E., Carbone, I., & Dean, R. A. (2008). Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens. BMC GENOMICS, 9. https://doi.org/10.1186/1471-2164-9-147

Conant, G. C., & Wolfe, K. H. (2008). GenomeVx: Simple web-based creation of editable circular chromosome maps. Bioinformatics, 24(6), 861–862. https://doi.org/10.1093/bioinformatics/btm598

Conant, G. C., & Wolfe, K. H. (2008). Increased glycolytic flux as an outcome of whole-genome duplication in yeast (Molecular Systems Biology (2007) 3 (129) DOI: 10.1038/msb4100170). Molecular Systems Biology, 4. https://doi.org/10.1038/msb.2008.46

Conant, G. C., & Wolfe, K. H. (2008). Probabilistic cross-species inference of orthologous genomic regions created by whole-genome duplication in yeast. Genetics, 179(3), 1681–1692. https://doi.org/10.1534/genetics.107.074450

Conant, G. C., & Wolfe, K. H. (2008). Turning a hobby into a job: How duplicated genes find new functions. Nature Reviews Genetics, 9(12), 938–950. https://doi.org/10.1038/nrg2482

Conant, G. C., & Wolfe, K. H. (2007). Increased glycolytic flux as an outcome of whole‐genome duplication in yeast. Molecular Systems Biology, 3(1), 129. https://doi.org/10.1038/msb4100170

Scannell, D. R., Frank, A. C., Conant, G. C., Byrne, K. P., Woolfit, M., & Wolfe, K. H. (2007). Independent sorting-out of thousands of duplicated gene pairs in two yeast species descended from a whole-genome duplication. Proceedings of the National Academy of Sciences of the United States of America, 104(20), 8397–8402. https://doi.org/10.1073/pnas.0608218104

Conant, G. C., Wagner, G. P., & Stadler, P. F. (2007). Modeling amino acid substitution patterns in orthologous and paralogous genes. Molecular Phylogenetics and Evolution, 42(2), 298–307. https://doi.org/10.1016/j.ympev.2006.07.006

Conant, G. C., & Wolfe, K. H. (2006). Functional Partitioning of Yeast Co-Expression Networks after Genome Duplication. PLoS Biology, 4(4), e109. https://doi.org/10.1371/journal.pbio.0040109

Conant, G. C., & Wagner, A. (2005). The rarity of gene shuffling in conserved genes. Genome Biology, 6(6). Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-33646556197&partnerID=MN8TOARS

Conant, G. C., & Wagner, A. (2004). A fast algorithm for determining the best combination of local alignments to a query sequence. BMC Bioinformatics, 5. https://doi.org/10.1186/1471-2105-5-62

Babu, S. R., Conant, G. C., Eller, E., Roberts, C. M., Gowan, K., Eisenbarth, G. S., … Vardi, P. (2004). A second-generation genome screen for linkage to type 1 diabetes in a Bedouin Arab family. In Annals of the New York Academy of Sciences (Vol. 1037, pp. 157–160). https://doi.org/10.1196/annals.1337.026

Conant, G. C., & Wagner, A. (2004). Duplicate genes and robustness to transient gene knock-downs in
            Caenorhabditis elegans. Proceedings of the Royal Society of London. Series B: Biological Sciences, 271(1534), 89–96. https://doi.org/10.1098/rspb.2003.2560

Hahn, M. W., Conant, G. C., & Wagner, A. (2004). Molecular Evolution in Large Genetic Networks: Does Connectivity Equal Constraint? Journal of Molecular Evolution, 58(2), 203–211. https://doi.org/10.1007/s00239-003-2544-0

Conant, G. C., & Wagner, A. (2003). Asymmetric sequence divergence of duplicate genes. Genome Research, 13(9), 2052–2058. https://doi.org/10.1101/gr.1252603

Conant, G. C., & Wagner, A. (2003). Convergent evolution of gene circuits. Nature Genetics, 34(3), 264–266. https://doi.org/10.1038/ng1181

Conant, G. C., Plimpton, S. J., Old, W., Wagner, A., Fain, P. R., Pacheco, T. R., & Heffelfinger, G. (2003). Parallel genehunter: Implementation of linkage analysis package for distributed-memory architectures. Journal of Parallel and Distributed Computing, 63(7-8), 674–682. https://doi.org/10.1016/S0743-7315(03)00080-7

Conant, G. C., & Wagner, A. (2002). GenomeHistory: A software tool and its application to fully sequenced genomes. Nucleic Acids Research, 30(15), 3378–3386. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-0036682357&partnerID=MN8TOARS

Conant, G., Plimpton, S., Old, W., Wagner, A., Fain, P., & Heffelfinger, G. (2002). Parallel genehunter: Implementation of a linkage analysis package for distributed-memory architectures. Proceedings - International Parallel and Distributed Processing Symposium, IPDPS 2002, 184–191. https://doi.org/10.1109/IPDPS.2002.1016586

Conant, G. C., & Lewis, P. O. (2001). Effects of nucleotide composition bias on the success of the parsimony criterion in phylogenetic inference. Molecular Biology and Evolution, 18(6), 1024–1033. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-0034983477&partnerID=MN8TOARS