@article{da silva pereira_mollinari_schumann_clough_zeng_yencho_2021, title={The recombination landscape and multiple QTL mapping in a Solanum tuberosum cv. ‘Atlantic’-derived F1 population}, volume={126}, ISSN={0018-067X 1365-2540}, url={http://dx.doi.org/10.1038/s41437-021-00416-x}, DOI={10.1038/s41437-021-00416-x}, abstractNote={Abstract}, number={5}, journal={Heredity}, publisher={Springer Science and Business Media LLC}, author={da Silva Pereira, Guilherme and Mollinari, Marcelo and Schumann, Mitchell J. and Clough, Mark E. and Zeng, Zhao-Bang and Yencho, G. Craig}, year={2021}, month={Mar}, pages={817–830} }
 @article{chavarria-perez_giordani_gracas dias_costa_massena ribeiro_benedetti_cauz-santos_pereira_bachega feijo rosa_franco garcia_et al._2020, title={Improving yield and fruit quality traits in sweet passion fruit: Evidence for genotype by environment interaction and selection of promising genotypes}, volume={15}, ISSN={["1932-6203"]}, DOI={10.1371/journal.pone.0232818}, abstractNote={Breeding for yield and fruit quality traits in passion fruits is complex due to the polygenic nature of these traits and the existence of genetic correlations among them. Therefore, studies focused on crop management practices and breeding using modern quantitative genetic approaches are still needed, especially for Passiflora alata, an understudied crop, popularly known as the sweet passion fruit. It is highly appreciated for its typical aroma and flavor characteristics. In this study, we aimed to reevaluate 30 genotypes previously selected for fruit quality from a 100 full-sib sweet passion fruit progeny in three environments, with a view to estimating the heritability and genetic correlations, and investigating the GEI and response to selection for nine fruit traits (weight, diameter and length of the fruit; thickness and weight of skin; weight and yield of fruit pulp; soluble solids, and yield). Pairwise genetic correlations among the fruit traits showed mostly intermediate to high values, especially those associated with fruit size and shape. Different genotype rankings were obtained regarding the predicted genetic values of weight of skin, thickness of skin and weight of pulp in each environment. Finally, we used a multiplicative selection index to select simultaneously for weight of pulp and against fruit skin thickness and weight. The response to selection was positive for all traits except soluble solids, and the 20% superior (six) genotypes were ranked. Based on the assumption that incompatibility mechanisms exist in P. alata, the selected genotypes were intercrossed in a complete diallel mating scheme. It is worth noting that all genotypes produced fruits, which is essential to guarantee yields in commercial orchards.}, number={5}, journal={PLOS ONE}, author={Chavarria-Perez, Lourdes Maria and Giordani, Willian and Gracas Dias, Kaio Olimpio and Costa, Zirlane Portugal and Massena Ribeiro, Carolina Albuquerque and Benedetti, Anderson Roberto and Cauz-Santos, Luiz Augusto and Pereira, Guilherme Silva and Bachega Feijo Rosa, Joao Ricardo and Franco Garcia, Antonio Augusto and et al.}, year={2020}, month={May} }
 @article{gemenet_lindqvist-kreuze_de boeck_da silva pereira_mollinari_zeng_craig yencho_campos_2020, title={Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops}, volume={133}, ISSN={0040-5752 1432-2242}, url={http://dx.doi.org/10.1007/s00122-020-03673-2}, DOI={10.1007/s00122-020-03673-2}, abstractNote={Key messagePolypoid crop breeders can balance resources between density and sequencing depth, dosage information and fewer highly informative SNPs recommended, non-additive models and QTL advantages on prediction dependent on trait architecture.}, number={12}, journal={Theoretical and Applied Genetics}, publisher={Springer Science and Business Media LLC}, author={Gemenet, Dorcus C. and Lindqvist-Kreuze, Hannele and De Boeck, Bert and da Silva Pereira, Guilherme and Mollinari, Marcelo and Zeng, Zhao-Bang and Craig Yencho, G. and Campos, Hugo}, year={2020}, month={Sep}, pages={3345–3363} }
 @article{lara_santos_jank_chiari_vilela_amadeu_santos_pereira_zeng_garcia_2019, title={Genomic Selection with Allele Dosage in Panicum maximum Jacq.}, volume={9}, ISSN={["2160-1836"]}, DOI={10.1534/g3.118.200986}, abstractNote={Abstract}, number={8}, journal={G3-GENES GENOMES GENETICS}, author={Lara, Leticia A. de C. and Santos, Mateus F. and Jank, Liana and Chiari, Lucimara and Vilela, Mariane de M. and Amadeu, Rodrigo R. and Santos, Jhonathan P. R. and Pereira, Guilherme da S. and Zeng, Zhao-Bang and Garcia, Antonio Augusto F.}, year={2019}, month={Aug}, pages={2463–2475} }