Works (21)

Updated: July 5th, 2023 15:18

2022 article

Experimental and Analytical Framework for "Mix-and-Read" Assays Based on Split Luciferase

McArthur, N., Cruz-Teran, C., Thatavarty, A., Reeves, G. T., & Rao, B. M. (2022, July 1). ACS OMEGA.

By: N. McArthur  n, C. Cruz-Teran n, A. Thatavarty  n, G. Reeves* & B. Rao n

co-author countries: United States of America 🇺🇸
Source: Web Of Science
Added: July 26, 2022

2022 journal article

Experimental and Analytical Framework for "Mix-and-Read" Assays Based on Split Luciferase

ACS OMEGA, 7(28), 24551–24560.

By: N. McArthur, C. Cruz-Teran, A. Thatavarty, G. Reeves & B. Rao

Source: Web Of Science
Added: August 8, 2022

2020 journal article

Discovery of Membrane-Permeating Cyclic Peptides via mRNA Display

BIOCONJUGATE CHEMISTRY, 31(10), 2325–2338.

By: J. Bowen n, A. Schloop n, G. Reeves*, S. Menegatti n  & B. Rao n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Cell Line; Cell-Penetrating Peptides / chemistry; Cell-Penetrating Peptides / genetics; Cell-Penetrating Peptides / pharmacokinetics; Drosophila melanogaster / embryology; Gene Library; Humans; Mice; Models, Molecular; NIH 3T3 Cells; Peptides, Cyclic / chemistry; Peptides, Cyclic / genetics; Peptides, Cyclic / pharmacokinetics; Permeability; RNA, Messenger / genetics
Sources: Web Of Science, ORCID
Added: December 21, 2020

2020 article

Formation, interpretation, and regulation of the Drosophila Dorsal/NF-kappa B gradient

GRADIENTS AND TISSUE PATTERNING, Vol. 137, pp. 143–191.

By: A. Schloop n, P. Bandodkar n & G. Reeves n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Body Patterning; Computational Biology / methods; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / embryology; Drosophila melanogaster / physiology; Embryo, Nonmammalian / cytology; Embryo, Nonmammalian / physiology; Gene Expression Regulation, Developmental; NF-kappa B / genetics; NF-kappa B / metabolism; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Phosphoproteins / genetics; Phosphoproteins / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism
Source: Web Of Science
Added: May 26, 2020

2020 journal article

Robustness of the Dorsal morphogen gradient with respect to morphogen dosage

PLOS COMPUTATIONAL BIOLOGY, 16(4).

By: H. Al Asafen n, P. Bandodkar n, S. Carrell-Noel n, A. Schloop n, J. Friedman n & G. Reeves n

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Body Patterning / genetics; Cell Nucleus / metabolism; Cytoplasm / metabolism; DNA-Binding Proteins / metabolism; Drosophila / embryology; Drosophila / genetics; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Embryo, Nonmammalian / metabolism; Gene Expression Regulation, Developmental / genetics; Morphogenesis / genetics; NF-kappa B / metabolism; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Phosphoproteins / genetics; Phosphoproteins / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism
Source: Web Of Science
Added: May 26, 2020

2020 journal article

Spatiotemporal control of gene expression boundaries using a feedforward loop

DEVELOPMENTAL DYNAMICS, 249(3), 369–382.

By: P. Bandodkar n, H. Al Asafen n & G. Reeves n

co-author countries: United States of America 🇺🇸
author keywords: dorsal morphogen; Drosophila embryo; feedforward loop; gene expression model; spatiotemporal dynamics; transcription factor; Twist; Zelda
MeSH headings : Animals; Body Patterning / genetics; Body Patterning / physiology; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster; Embryo, Nonmammalian / metabolism; Gene Expression Regulation, Developmental / genetics; Gene Expression Regulation, Developmental / physiology; NF-kappa B / metabolism; Signal Transduction / genetics; Signal Transduction / physiology
Source: Web Of Science
Added: February 3, 2020

2020 article

Spatiotemporal control of gene expression boundaries using a feedforward loop

Reeves, G., Bandodkar, P., & Al Asafen, H. (2020, April). FASEB JOURNAL, Vol. 34.

By: G. Reeves n, P. Bandodkar n & H. Al Asafen n

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
Source: Web Of Science
Added: October 12, 2020

2020 journal article

Tunable self-cleaving ribozymes for modulating gene expression in eukaryotic systems

PLOS ONE, 15(4).

By: T. Jacobsen n, G. Yi n, H. Al Asafen n, A. Jermusyk n, C. Beisel n & G. Reeves n

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
MeSH headings : Animals; Drosophila / genetics; Eukaryota / genetics; Eukaryota / metabolism; Eukaryotic Cells / metabolism; Gene Expression / genetics; Gene Expression / physiology; Gene Expression Regulation / genetics; Gene Expression Regulation / physiology; Genetic Engineering / methods; Nucleic Acid Conformation; Proof of Concept Study; RNA, Catalytic / genetics; RNA, Catalytic / physiology; RNA, Messenger / metabolism; Synthetic Biology / methods
Source: Web Of Science
Added: June 22, 2020

2019 journal article

The engineering principles of combining a transcriptional incoherent feedforward loop with negative feedback

JOURNAL OF BIOLOGICAL ENGINEERING, 13.

By: G. Reeves n

co-author countries: United States of America 🇺🇸
author keywords: Incoherent feedforward loop; Negative feedback; Gene regulation; Network motif; Engineering principles
Source: Web Of Science
Added: August 5, 2019

2013 journal article

Image analysis and empirical modeling of gene and protein expression

Methods, 62(1), 68–78.

By: N. Trisnadi*, A. Altinok*, A. Stathopoulos * & G. Reeves n

co-author countries: United States of America 🇺🇸
author keywords: Quantitative measurements; Gene expression; Protein gradient; Drosophila melanogaster; Dorsal-ventral patterning; Empirical modeling
MeSH headings : Animals; Body Patterning / genetics; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / embryology; Drosophila melanogaster / genetics; Drosophila melanogaster / metabolism; Embryo, Nonmammalian / cytology; Embryo, Nonmammalian / metabolism; Embryo, Nonmammalian / ultrastructure; Gene Expression Regulation, Developmental; Homeodomain Proteins / genetics; Homeodomain Proteins / metabolism; Image Processing, Computer-Assisted / statistics & numerical data; In Situ Hybridization; Microscopy, Confocal; Models, Genetic; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Phosphoproteins / genetics; Phosphoproteins / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism
Source: Crossref
Added: June 6, 2020

2013 journal article

Size-dependent regulation of dorsal–ventral patterning in the early Drosophila embryo

Developmental Biology, 381(1), 286–299.

By: M. Garcia*, M. Nahmad *, G. Reeves n & A. Stathopoulos *

co-author countries: United States of America 🇺🇸
author keywords: Developmental patterning; Dorsal gradient; Gene expression; Morphogen; Scaling; Drosophila melanogaster
MeSH headings : Animals; Body Patterning; Body Size; Cell Nucleus / metabolism; Drosophila Proteins / metabolism; Drosophila melanogaster / embryology; Gene Expression Profiling; Gene Expression Regulation, Developmental; Mutation; Snail Family Transcription Factors; Transcription Factors / metabolism
Source: Crossref
Added: June 6, 2020

2012 journal article

Dorsal-Ventral Gene Expression in the Drosophila Embryo Reflects the Dynamics and Precision of the Dorsal Nuclear Gradient

Developmental Cell, 22(3), 544–557.

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Body Patterning / genetics; Computer Simulation; Drosophila Proteins / genetics; Drosophila melanogaster / cytology; Drosophila melanogaster / embryology; Drosophila melanogaster / genetics; Embryo, Nonmammalian / metabolism; Female; Gene Expression Regulation, Developmental; Microscopy / methods; Transcription Factors / genetics; Transcription Factors / metabolism
Source: Crossref
Added: June 6, 2020

2011 journal article

Size-dependent regulation of dorsal-ventral patterning in the early Drosophila embryo

Developmental Biology, 356(1), 119.

co-author countries: United States of America 🇺🇸
Source: Crossref
Added: June 6, 2020

2009 journal article

Quantitative imaging of the Dorsal nuclear gradient reveals limitations to threshold-dependent patterning in Drosophila

Proceedings of the National Academy of Sciences, 106(52), 22317–22322.

co-author countries: United States of America 🇺🇸
author keywords: development; gene expression
MeSH headings : Animals; Body Patterning / genetics; Body Patterning / physiology; Cell Nucleus / metabolism; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Drosophila melanogaster / embryology; Drosophila melanogaster / genetics; Drosophila melanogaster / metabolism; Female; Gene Expression Regulation, Developmental; Genes, Insect; In Situ Hybridization, Fluorescence; Male; Models, Biological; Mutation; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Phosphoproteins / genetics; Phosphoproteins / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism
Source: Crossref
Added: November 14, 2020

2006 journal article

Quantifying the Gurken Morphogen Gradient in Drosophila Oogenesis

Developmental Cell, 11(2), 263–272.

By: L. Goentoro *, G. Reeves*, C. Kowal*, L. Martinelli*, T. Schüpbach* & S. Shvartsman *

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Drosophila / physiology; Drosophila Proteins / genetics; Drosophila Proteins / physiology; Ligands; Models, Biological; Oogenesis / physiology; Protein Transport / physiology; Signal Transduction / physiology; Transforming Growth Factor alpha / genetics; Transforming Growth Factor alpha / physiology
Source: Crossref
Added: November 14, 2020

2006 journal article

Quantitative Models of Developmental Pattern Formation

Developmental Cell, 11(3), 289–300.

By: G. Reeves*, C. Muratov *, T. Schüpbach* & S. Shvartsman *

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Body Patterning; Cell Polarity; Developmental Biology; Drosophila / embryology; Models, Biological; Morphogenesis; Wings, Animal / embryology
Source: Crossref
Added: November 14, 2020

2005 journal article

Computational analysis of EGFR inhibition by Argos

Developmental Biology, 284(2), 523–535.

By: G. Reeves*, R. Kalifa*, D. Klein *, M. Lemmon * & S. Shvartsman *

co-author countries: United States of America 🇺🇸
author keywords: EGFR inhibition; Argos; Spitz
MeSH headings : Animals; Basic Helix-Loop-Helix Transcription Factors; Body Patterning / genetics; Computational Biology; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Drosophila / embryology; Drosophila / metabolism; Drosophila Proteins / biosynthesis; Drosophila Proteins / genetics; Drosophila Proteins / metabolism; Ectoderm / cytology; Ectoderm / metabolism; Enzyme Induction; Epidermal Growth Factor / metabolism; ErbB Receptors / antagonists & inhibitors; ErbB Receptors / metabolism; Eye Proteins / genetics; Eye Proteins / metabolism; Feedback, Physiological; Gene Dosage; Genes, Insect; In Situ Hybridization; Insect Proteins / genetics; Insect Proteins / metabolism; Kinetics; Membrane Proteins / biosynthesis; Membrane Proteins / metabolism; Models, Biological; Mutation; Nerve Tissue Proteins / genetics; Nerve Tissue Proteins / metabolism; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; RNA, Messenger / metabolism
Source: Crossref
Added: November 14, 2020

2004 journal article

Argos inhibits epidermal growth factor receptor signalling by ligand sequestration

Nature, 430(7003), 1040–1044.

By: D. Klein *, V. Nappi*, G. Reeves*, S. Shvartsman * & M. Lemmon *

co-author countries: United States of America 🇺🇸
MeSH headings : Animals; Binding Sites; Down-Regulation; Drosophila Proteins / antagonists & inhibitors; Drosophila Proteins / metabolism; Drosophila melanogaster / metabolism; Electron Spin Resonance Spectroscopy; Epidermal Growth Factor / antagonists & inhibitors; Epidermal Growth Factor / metabolism; ErbB Receptors / antagonists & inhibitors; ErbB Receptors / metabolism; Eye Proteins / metabolism; Ligands; Membrane Proteins / antagonists & inhibitors; Membrane Proteins / metabolism; Nerve Tissue Proteins / metabolism; Protein Binding; Protein Kinase Inhibitors; Protein Kinases / metabolism; Receptors, Invertebrate Peptide / antagonists & inhibitors; Receptors, Invertebrate Peptide / metabolism; Signal Transduction
Source: Crossref
Added: November 14, 2020

2004 journal article

Growth of mixed cultures on mixtures of substitutable substrates: the operating diagram for a structured model

Journal of Theoretical Biology, 226(2), 143–157.

By: G. Reeves*, A. Narang* & S. Pilyugin*

co-author countries: United States of America 🇺🇸
author keywords: microbial growth; mathematical model; mixed cultures; mixed substrate; substitutable substrates; coexistence
MeSH headings : Bacteria; Coculture Techniques / methods; Culture Media; Models, Biological
Source: Crossref
Added: November 14, 2020

2004 journal article

Predicting stability of mixed microbial cultures from single species experiments: 1. Phenomenological model

Mathematical Biosciences, 192(2), 85–109.

By: S. Pilyugin*, G. Reeves* & A. Narang*

co-author countries: United States of America 🇺🇸
author keywords: microbial growth; phenomenological model; mixed cultures; substitutable substrates; mutual uptake inhibition; coexistence; growth isocline; consumption curve
MeSH headings : Culture Media; Escherichia coli / growth & development; Escherichia coli / metabolism; Mathematics; Microbiology / statistics & numerical data; Models, Biological; Pichia / growth & development; Pichia / metabolism
Source: Crossref
Added: November 14, 2020

2004 journal article

Predicting stability of mixed microbial cultures from single species experiments: 2. Physiological model

Mathematical Biosciences, 192(2), 111–136.

By: S. Pilyugin*, G. Reeves* & A. Narang*

co-author countries: United States of America 🇺🇸
author keywords: microbial growth; physiological model; mixed cultures; substitutable substrates; peripheral enzyme; stable coexistence; growth isocline; consumption curve
MeSH headings : Culture Media; Enzymes / metabolism; Escherichia coli / growth & development; Escherichia coli / metabolism; Kinetics; Mathematics; Microbiology / statistics & numerical data; Models, Biological; Pichia / growth & development; Pichia / metabolism
Source: Crossref
Added: November 14, 2020