Hudson Ashrafi

Breeding, Plant Breeding, Bioinformatics, Genetics, Cotton, Pepper, Tomato, Melon, Sponge Gourd

Works (108)

Updated: April 3rd, 2024 18:29

2023 journal article

Genome-wide association identifies key loci controlling blackberry postharvest quality

FRONTIERS IN PLANT SCIENCE, 14.

By: T. Chizk*, J. Clark*, C. Johns*, L. Nelson*, H. Ashrafi n, R. Aryal n, M. Worthington*

author keywords: firmness; red drupelet reversion; GWAS; polygalacaturonase; pectin methylesterase (PME); Rubus; polyploidy
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: July 3, 2023

2022 journal article

A chromosome-length genome assembly and annotation of blackberry (<i>Rubus argutus</i>, cv. “Hillquist”)

G3 Genes|Genomes|Genetics, 11(ue 2).

Ed(s): T. Pyhäjärvi

author keywords: Rubus; blackberry; Rosaceae; Rosoideae; biennial flowering; annual flowering; primocane-fruiting; chromosome-length genome assembly; Hi-C; annotation; repetitive content
MeSH headings : Rubus / genetics; Tetraploidy; Plant Breeding; Chromosome Mapping; Chromosomes, Plant / genetics; Molecular Sequence Annotation
TL;DR: The utility of the ‘Hillquist’ genome has been demonstrated here by the development of the first genotyping-by-sequencing based linkage map of tetraploid blackberry and the identification of several possible candidate genes for primocane-fruiting within the previously mapped locus. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref, ORCID
Added: December 16, 2022

2022 article

A first complete phylogenomic hypothesis for diploid blueberries (Vaccinium section Cyanococcus)

Crowl, A. A., Fritsch, P. W., Tiley, G. P., Lynch, N. P., Ranney, T. G., Ashrafi, H., & Manos, P. S. (2022, October 17). AMERICAN JOURNAL OF BOTANY, Vol. 10.

author keywords: alleles; Ericaceae; homoploid hybridization; HybSeq; phasing; phylogenetics; target enrichment; Vaccinium
MeSH headings : Phylogeny; Diploidy; Blueberry Plants; Vaccinium; Polyploidy
TL;DR: This foundational study represents the first attempt to elucidate evolutionary relationships of the true blueberries of North America with a phylogenomic approach and sets the stage for multiple avenues of future study such as a taxonomic revision of the group, the verification of a homoploid hybrid taxon, and the study of polyploid lineages within the context of a diploid phylogeny. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: October 31, 2022

2022 article

Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum)

Mengist, M. F., Bostan, H., De Paola, D., Teresi, S. J., Platts, A. E., Cremona, G., … Iorizzo, M. (2022, September 3). NEW PHYTOLOGIST, Vol. 9.

By: M. Mengist n, H. Bostan n, D. De Paola*, S. Teresi*, A. Platts*, G. Cremona*, X. Qi*, T. Mackey* ...

author keywords: autopolyploid; blueberry (Vaccinium corymbosum L; ); centromeric repeat; chromosomal translocation; chromosome structure; phased genome; polyploid genetic behavior
MeSH headings : Tetraploidy; Blueberry Plants / genetics; Inheritance Patterns; Polyploidy; Chromosomes
TL;DR: A new high‐quality, phased, chromosome‐scale genome of a diploid blueberry, clone W85 is described, which will facilitate new genetic and comparative genomic studies in Vaccinium and the development of genomic assisted selection strategy for this crop. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science, NC State University Libraries
Added: September 4, 2022

2022 article

Identification of late blight resistance quantitative trait loci in Solanum pimpinellifolium accession PI 270441

Sullenberger, M. T., Jia, M., Gao, S., Ashrafi, H., & Foolad, M. R. (2022, August 12). PLANT GENOME, Vol. 8.

By: M. Sullenberger*, M. Jia*, S. Gao*, H. Ashrafi n & M. Foolad*

MeSH headings : Quantitative Trait Loci; Solanum / genetics; Plant Diseases / genetics; Plant Breeding; Phytophthora infestans / genetics; Solanum lycopersicum / genetics; Solanum tuberosum / genetics
TL;DR: The markers associated with these QTLs can be used to transfer LB resistance from PI 270441 into new tomato cultivars and to develop near‐isogenic lines for fine mapping of the QTL. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 29, 2022

2022 journal article

Nuclear DNA contents and ploidy levels of North American Vaccinium species and interspecific hybrids

SCIENTIA HORTICULTURAE, 297.

By: L. Redpath n, R. Aryal n, N. Lynch n, J. Spencer n, A. Hulse-Kemp n, J. Ballington n, J. Green*, N. Bassil* ...

author keywords: Blueberry; Vaccinium; Flowcytometry; Propidium iodide; K -mer analysis
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: May 16, 2022

2022 journal article

RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry

FRONTIERS IN GENETICS, 12.

author keywords: Colletotrichum acutatum; Colletotrichum gloeosporioides; Fragaria x ananassa; rate-reducing resistance; gene regulatory network
TL;DR: Comparison transcriptome analyses and Gene regulatory network inference analysis revealed candidate transcription factors (TFs) such as GATA5 and MYB-10, and their downstream targets were upregulated in resistant interactions, which can provide valuable insights into transcriptional changes during resistant and susceptible interactions. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
3. Good Health and Well-being (OpenAlex)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: April 25, 2022

2022 journal article

There and back again; historical perspective and future directions for Vaccinium breeding and research studies

HORTICULTURE RESEARCH, 9.

Sources: Web Of Science, NC State University Libraries
Added: August 1, 2022

2021 article

An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids

Hulse-Kemp, A. M., Bostan, H., Chen, S., Ashrafi, H., Stoffel, K., Sanseverino, W., … Van Deynze, A. (2021, June 10). PLANT GENOME, Vol. 6.

By: A. Hulse-Kemp n, H. Bostan n, S. Chen*, H. Ashrafi n, K. Stoffel*, W. Sanseverino*, L. Li*, S. Cheng* ...

MeSH headings : Chromosomes; Gene Rearrangement; Peronospora; Plant Breeding; Spinacia oleracea / genetics
TL;DR: Diversity analysis of 75 lines indicate that variation in genes is ample for hypothesis‐driven, genomic‐assisted breeding enabled by this work, and Evolutionary analysis indicates that Spinacia is a paleohexaploid with a whole‐genome triplication followed by extensive gene rearrangements identified in this work. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: June 14, 2021

2021 journal article

An optimized protocol for stepwise optimization of real-time RT-PCR analysis

HORTICULTURE RESEARCH, 8(1).

By: F. Zhao*, N. Maren n, P. Kosentka n, Y. Liao n, H. Lu n, J. Duduit n, D. Huang n, H. Ashrafi n ...

TL;DR: This work proposed an optimized approach to sequentially optimizing primer sequences, annealing temperatures, primer concentrations, and cDNA concentration range for each reference (and target) gene and validated their utility under varying abiotic stress conditions. (via Semantic Scholar)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 1, 2021

2021 journal article

Detection of Fruit Meals Within Laboratory-Raised and Field-Trapped Adult Drosophila suzukii (Diptera: Drosophilidae) Guts

Frontiers in Ecology and Evolution, 9.

author keywords: spotted wing Drosophila; integrated pest management; invasive species; gut content; small fruit IPM
TL;DR: Molecular methods to study adult D. suzukii gut content suggest that adult flies move between crop and non-crop habitats and may not be highly dependent on fruit food resources. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries, Crossref
Added: September 20, 2021

2021 journal article

Genome sequence of Monilinia vaccinii-corymbosi sheds light on mummy berry disease infection of blueberry and mating type

G3-GENES GENOMES GENETICS, 11(2).

By: A. Yow n, Y. Zhang*, K. Bansal*, S. Eacker, S. Sullivan, I. Liachko, M. Cubeta n, J. Rollins*, H. Ashrafi n

Ed(s): D. Baltrus

author keywords: blueberry; mummy berry; Monilinia vaccinii-corymbosi; Mvc; disease; blight; pathology; mating-type; effectors
MeSH headings : Ascomycota / genetics; Blueberry Plants; Fruit; North America; Plant Diseases / microbiology
TL;DR: In this study, PacBio sequencing and Hi-C interaction data were utilized to create a chromosome-scale reference genome for Mvc and the mating-type (MAT) locus was characterized, indicating the potential for homothallism in the reference genome. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: January 5, 2021

2021 journal article

Genotype, Environment, Year, and Harvest Effects on Fruit Quality Traits of Five Blueberry (Vaccinium corymbosum L.) Cultivars

AGRONOMY-BASEL, 11(9).

author keywords: blueberry; Vaccinium corymbosum; genotype by environment; fruit quality; Maker-Assisted-Selection
TL;DR: Assessment of genotypic performance of five blueberry cultivars indicated that genotype was a significant source of variation for most phenotypic characteristics and clonal plant replicates within a genotype, harvest, and environment, in addition to individual fruit measures, were the most significant sources of variability. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science; OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: September 8, 2021

2021 journal article

High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry

HORTICULTURE RESEARCH, 8(1).

By: M. Mengist n, H. Bostan n, E. Young n, K. Kay*, N. Gillitt*, J. Ballington n, C. Kay n, M. Ferruzzi n ...

TL;DR: The genetic basis of fruit quality traits in blueberry was dissected and an association between these fruit quality trait and metabolites detected by Proton nuclear magnetic resonance analysis was established. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 1, 2021

2021 journal article

Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae)

BMC GENOMICS, 22(1).

author keywords: Tripidium ravennae; Transcriptome sequencing; Differential gene expression; Next-generation sequencing; Floral transition; Flowering; Inflorescence development; Reproduction; RNA sequencing; Seed development
MeSH headings : Gene Expression Profiling; Gene Expression Regulation, Plant; Inflorescence; Plant Breeding; Poaceae
TL;DR: This research identified differentially expressed transcripts associated with floral induction, inflorescence development, and seed development in T. ravennae, providing insights into the molecular regulation of reproductive development and providing a foundation for future investigations and analyses. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: July 19, 2021

2020 journal article

A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding

G3-GENES GENOMES GENETICS, 10(10), 3729–3740.

By: J. Zurn*, M. Driskill*, S. Jung*, D. Main*, M. Yin*, M. Clark*, L. Cheng*, H. Ashrafi n ...

author keywords: Fruit sweetness; Rubusspp; RosBREED; Marker-assisted breeding; Marker-assisted selection
MeSH headings : DNA; Fragaria / genetics; Fruit; Malus / genetics; Plant Breeding; Rosaceae / genetics; Rubus / genetics
TL;DR: This discovery represents the first environmentally stable sweetness QTL identified in blackberry and can be used to develop breeding tools for other crops that have not yet benefited directly from the genomics revolution. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: November 2, 2020

2020 journal article

Biomass yields, cytogenetics, fertility, and compositional analyses of novel bioenergy grass hybrids (Tripidium spp.)

GLOBAL CHANGE BIOLOGY BIOENERGY, 12(5), 361–373.

author keywords: bioenergy; bioprocessing; Erianthus; fertility; forage; lignocellulose; Miscanthus; plant breeding; polyploidy; reproductive biology; Saccharum; sterility; Tripidium
TL;DR: Findings for Tripidium hybrids, including high biomass yields, cold hardiness, and desirable traits for multiple markets (e.g., forage, bioenergy, bioproducts), are promising and warrant further development of Tripidium as a temperate bioenergy feedstock. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: April 6, 2020

2020 journal article

Simulated storage causes carbohydrate loss and rooting differences in two poinsettia cultivars

CANADIAN JOURNAL OF PLANT SCIENCE, 100(4), 459–462.

author keywords: cutting (unrooted); postharvest handling
TL;DR: Carbohydrate maintenance may be an indicator of storage tolerant and better-rooting cultivars of poinsettias. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 31, 2020

2019 journal article

3D point cloud data to quantitatively characterize size and shape of shrub crops

HORTICULTURE RESEARCH, 6.

By: Y. Jiang, C. Li*, F. Takeda*, E. Kramer*, H. Ashrafi n & J. Hunter*

TL;DR: The processing pipeline of 3D point cloud data presented in this study is an effective tool for blueberry breeding programs (in particular for mechanical harvesting) and farm management and provides a promising tool to evaluate and manage varieties of blueberries and similar crops, though further work is needed to speed up data collection. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: July 15, 2019

2019 journal article

Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection

PLANT GENOME, 12(1).

By: I. Gonda*, H. Ashrafi n, D. Lyon*, S. Strickler*, A. Hulse-Kemp*, Q. Ma*, H. Sun*, K. Stoffel* ...

MeSH headings : Chromosome Mapping; Chromosomes, Plant; Genes, Plant; Genotyping Techniques; Lycopene / metabolism; Solanum lycopersicum / genetics; Polymorphism, Single Nucleotide / genetics; Quantitative Trait Loci; RNA, Plant; Recombination, Genetic; Sequence Analysis, RNA; cis-trans-Isomerases / metabolism
TL;DR: Identification of SIZISO as the gene underlying the lycopene QTL Lyc12.1 RIL population, high‐resolution genetic map, and analytical pipeline available to the public. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: April 2, 2019

2018 journal article

Breeding Trait Priorities of the Blueberry Industry in the United States and Canada

HortScience, 53(7), 1021–1028.

author keywords: berry breeding; industry priorities survey; cultivars
UN Sustainable Development Goal Categories
9. Industry, Innovation and Infrastructure (OpenAlex)
Source: ORCID
Added: December 6, 2018

2018 speech

Developing the Genomic Resources for a Tetraploid Blueberry cv "O'Neal"

Aryal, R., Yow, A., & Ashrafi, H. (2018, August). Poster presented at the National Association of Plant Breeders 2018 Annual Meeting, Guelph Canada.

By: R. Aryal, A. Yow & H. Ashrafi

Event: National Association of Plant Breeders 2018 Annual Meeting at Guelph Canada

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression during Blueberry Fruits Ripening

Aryal, R., & Ashrafi, H. (2018, July). Poster presented at the Plant Biology 2018, Montreal, Quebec, Canada.

By: R. Aryal & H. Ashrafi

Event: Plant Biology 2018 at Montreal, Quebec, Canada

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression during Flower and Fruit Development of the Blueberry Cv. "O'Neal"

Aryal, R., Bostan, H., Yow, A. G., Tseng, E., Iorizzo, M., & Ashrafi, H. (Januaary 13-17, 2018Januaary 13-17, 2018). Poster presented at the Plant and Animal Genome XXVI Conference, San Diego CA.

By: R. Aryal, H. Bostan, A. Yow, E. Tseng, M. Iorizzo & H. Ashrafi

Event: Plant and Animal Genome XXVI Conference at San Diego CA

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression of Southern Highbush Blueberry cv. ‘O’Neal’ Floral Buds in Response to Freeze Treatment and Recovery Periods

Redpath, L. E., Yow, A. G., Aryal, R., Hulse-Kemp, A. M., Franks, R. G., Whetten, R., & Ashrafi, H. (2018, July). Poster presented at the American Society for Horticultural Science, Washington D.C.

By: L. Redpath, A. Yow, R. Aryal, A. Hulse-Kemp, R. Franks, R. Whetten, H. Ashrafi

Event: American Society for Horticultural Science at Washington D.C

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression of ‘O’Neal’ Blueberry Floral Buds in Response to Freeze Treatment and Recovery Periods

Redpath, L. E., & Ashrafi, H. (2018, April). Presented at the Genomic Science and Biomathematics Symposium, NC State University, Raleigh NC.

By: L. Redpath & H. Ashrafi

Event: Genomic Science and Biomathematics Symposium at NC State University, Raleigh NC

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Evaluation of Mechanically Harvested Southern Highbush Blueberries (Vaccinium corymbosum) Advanced Selections for Fresh Market

Redpath, L. E., Bland, T. W., Ballington, J. R., Jiang, Y., Li, C., & Ashrafi, H. (2018, July). Presented at the American Society for Horticultural Science, Washington D.C.

By: L. Redpath, T. Bland, J. Ballington, Y. Jiang, C. Li & H. Ashrafi

Event: American Society for Horticultural Science at Washington D.C

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Fruit Quality Related Trait Evaluation in a Segregating F1 Population of Blueberry from a Cross Between "Reveille" and "Arlen" Cultivars

Young, E., Redpath, L., Iorizzo, M., & Ashrafi, H. (2018, August). Poster presented at the National Association of Plant Breeders 2018 Annual Meeting, Guelph, Canada.

By: E. Young, L. Redpath, M. Iorizzo & H. Ashrafi

Event: National Association of Plant Breeders 2018 Annual Meeting at Guelph, Canada

Source: NC State University Libraries
Added: November 1, 2018

2018 journal article

Identification and Mapping of Late Blight Resistance Quantitative Trait Loci in Tomato Accession PI 163245

The Plant Genome, 0(0), 0.

MeSH headings : Disease Resistance / genetics; Genome, Plant; Solanum lycopersicum / genetics; Plant Diseases / genetics; Quantitative Trait Loci
TL;DR: This work has characterized a new source of late blight resistance in tomato and identified new SNP markers using GBS approach, and developed a new genetic map of tomato. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: ORCID
Added: December 6, 2018

2018 speech

RNA-Seq Analysis of Floral Bud Response to Freeze Treatments in Southern Highbush Blueberry CV "O’Neal"

Redpath, L. E., Yow, A. G., Aryal, R., Hulse-Kemp, A. M., Franks, R. G., Whetten, R., & Ashrafi, H. (2018, August). Poster presented at the National Plant Breeders Association, Guelph Ontario, Canada August.

By: L. Redpath, A. Yow, R. Aryal, A. Hulse-Kemp, R. Franks, R. Whetten, H. Ashrafi

Event: National Plant Breeders Association at Guelph Ontario, Canada August

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Single Nucleotide Polymorphic (SNP) Marker Discovery in a Diverse Panel of Blueberry (Vaccinium sp.) Species

Young., E., Ballington, J. R., & Ashrafi, H. (2018, July). Presented at the American Society of Horticulture Sciences, Washington, D.C.

By: E. Young., J. Ballington & H. Ashrafi

Event: American Society of Horticulture Sciences at Washington, D.C

Source: NC State University Libraries
Added: November 1, 2018

2017 speech

Differential Gene Expression Analysis of Blueberry Cultivar “Arlen” in Response to Mummy Berry (Monilinia vaccinii-corymbosi) Disease Infection

Yow, A. G., Burchhardt, K., Rollins, J. A., Cubeta, M. A., & Ashrafi, H. (2017, September). Presented at the Plant Molecular Biology Consortium Retreat, Asheville, NC.

By: A. Yow, K. Burchhardt, J. Rollins, M. Cubeta & H. Ashrafi

Event: Plant Molecular Biology Consortium Retreat at Asheville, NC

Source: NC State University Libraries
Added: November 1, 2018

2017 journal article

Disease Resistance to Multiple Fungal and Oomycete Pathogens Evaluated Using a Recombinant Inbred Line Population in Pepper

PHYTOPATHOLOGY, 107(12), 1522–1531.

By: R. Naegele n, L. Granke n, J. Fry n, T. Hill n, H. Ashrafi n, A. Van Deynze*, M. Hausbeck n

author keywords: Capsicum annuum; host resistance
MeSH headings : Capsicum / genetics; Capsicum / immunology; Capsicum / microbiology; Disease Resistance / genetics; Fruit / genetics; Fruit / immunology; Fruit / microbiology; Fungi / physiology; Genetic Linkage; Phytophthora / physiology; Plant Diseases / immunology; Plant Diseases / microbiology; Quantitative Trait Loci / genetics
TL;DR: No sites of MDR were identified for pathogens tested; however, positive correlations in disease incidence were detected among pathogens suggesting there may be genetic linkage among resistance genes in CM334 and Early Jalapeno. (via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2017 speech

Identification of Candidate Genes for Mummy Berry Disease Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2017, March). Poster presented at the NCSU Graduate Student Research Symposium, Raleigh, NC.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: NCSU Graduate Student Research Symposium at Raleigh, NC

Source: NC State University Libraries
Added: November 1, 2018

2017 speech

Identification of Candidate Genes for Mummy Berry Disease Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2017, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXV), San Diego, CA.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2017 journal article

Regions Underlying Population Structure and the Genomics of Organ Size Determination in

The Plant Genome, 10(3), 0.

By: T. Hill*, J. Chunthawodtiporn*, H. Ashrafi n, K. Stoffel*, A. Weir* & A. Deynze*

MeSH headings : Capsicum / genetics; Chromosomes, Plant; Genome, Plant; Quantitative Trait Loci
TL;DR: There are hotspots for fruit size QTLs in the genome that overlap with quantitative trait loci (QTLs) and genes determining pepper fruit size and pungency. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: ORCID
Added: December 6, 2018

2016 journal article

A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding

HORTICULTURE RESEARCH, 3(1).

By: A. Hulse-Kemp*, H. Ashrafi n, J. Plieske, J. Lemm, K. Stoffel*, T. Hill*, H. Luerssen, C. Pethiyagoda* ...

TL;DR: Through resequencing of inbred lines, a valuable haplotype map (HapMap) for the pepper genome based on single-nucleotide polymorphisms (SNP) is completed and the PepperSNP16K array can be used worldwide to share findings and analyze QTLs for important traits leading to continued improvement of pepper for consumers. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science; OpenAlex)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2016 journal article

A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

NATURE GENETICS, 48(6), 657-+.

By: M. Iorizzo*, S. Ellison*, D. Senalik*, P. Zeng*, P. Satapoomin*, J. Huang*, M. Bowman*, M. Iovene* ...

MeSH headings : Biological Evolution; Carotenoids / metabolism; Daucus carota / classification; Daucus carota / genetics; Daucus carota / metabolism; Genes, Regulator; Genetic Linkage; Genetic Markers; Genome, Plant; Phylogeny; Plant Roots / metabolism
TL;DR: A high-quality chromosome-scale assembly and analysis of the carrot genome is reported, the first sequenced genome to include a comparative evolutionary analysis among members of the euasterid II clade, and a candidate gene, DCAR_032551, is identified that conditions carotenoid accumulation (Y) in carrot taproot and is coexpressed with several isoprenoid biosynthetic genes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2016 journal article

DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton

PLOS GENETICS, 12(5).

By: J. Page*, Z. Liechty*, R. Alexander*, K. Clemons*, A. Hulse-Kemp*, H. Ashrafi*, A. Van Deynze*, D. Stelly*, J. Udall*

Ed(s): K. Bomblies

MeSH headings : Alleles; Chromosome Mapping; Chromosomes, Plant / genetics; Cotton Fiber; Evolution, Molecular; Genome, Plant; Genotype; Gossypium / genetics; High-Throughput Nucleotide Sequencing; Polymorphism, Single Nucleotide; Polyploidy; Tetraploidy
TL;DR: The evolution of the cotton genome (SNPs and structural variants) with the greatly improved resolution of 34 deeply re-sequenced genomes is described and the evolution of homoeologous regions in the AT- and DT-genomes is explored. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2016 speech

Identification of Differentially Expressed Genes for Mummy Berry (Monilinia vaccinii-corymbosi) Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2016, August). Poster presented at the Conference for the American Society for Horticultural Science (ASHS), Atlanta, GA.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: Conference for the American Society for Horticultural Science (ASHS) at Atlanta, GA

Source: NC State University Libraries
Added: November 1, 2018

2016 speech

Major CNV Detection by Read-Depth Analysis Using Capture-Based GBS in Cotton

Santiago, L. M. D., Hulse-Kemp, A. M., Resende, M., Neves, L. G., Ashrafi, H., Gill, C. A., & Stelly, D. M. (2016, January). Poster presented at the International Conference of Plant and Animal Genome Research (PAG XXIV), San Diego, CA.

By: L. Santiago, A. Hulse-Kemp, M. Resende, L. Neves, H. Ashrafi, C. Gill, D. Stelly

Event: International Conference of Plant and Animal Genome Research (PAG XXIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2016 journal article

New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL

Frontiers in Plant Science, 7.

author keywords: orthology; chromosome rearrangement; CDS; gene alignment; CTL; genetic map
TL;DR: The results highlight that the availability of genome sequences for an increasing number of crop species and the development of “ultra-dense” physical maps provide new and key tools for detailed syntenic and orthology studies between related plant species. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2016 speech

QTL Underlying Androgenic Haploid Production in Pepper (Capsicum annuum)

Hill, T., Afnan, K., Ray, T., Chaverri, A., Ashrafi, H., Deynze, A. V., & Bradford, K. (2016, January). Poster presented at the International Conference of Plant and Animal Genome Research (PAG XXIV), San Diego, CA.

By: T. Hill, K. Afnan, T. Ray, A. Chaverri, H. Ashrafi, A. Deynze, K. Bradford

Event: International Conference of Plant and Animal Genome Research (PAG XXIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2016 speech

Toward Deciphering of Mechanisms Underlying White Drupelet and Reversion Disorders of Blackberry

Fernandez, G., Carter, J. R., Yow, A. G., & Ashrafi, H. (2016, January). Poster presented at the International Conference of Plant and Animal Genome Research (PAG XXIV), San Diego, CA.

By: G. Fernandez, J. Carter, A. Yow & H. Ashrafi

Event: International Conference of Plant and Animal Genome Research (PAG XXIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2016 speech

Using RNA-Seq for the Identification of Candidate Genes for Mummy Berry Disease Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2016, September). Presented at the Plant Molecular Biology Consortium Retreat, Wrightsville Beach, NC.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: Plant Molecular Biology Consortium Retreat at Wrightsville Beach, NC

Source: NC State University Libraries
Added: November 1, 2018

2015 journal article

A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery

The Plant Genome, 8(2), 0.

By: H. Ashrafi*, A. Hulse-Kemp*, F. Wang*, S. Yang*, X. Guan*, D. Jones*, M. Matvienko*, K. Mockaitis* ...

TL;DR: Availability of the reference transcriptome assembly of the inbred line Texas Marker‐1 is reported and its utility in developing intraspecific SNP markers in upland cotton is shown. (via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: November 1, 2018

2015 journal article

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping

G3&Amp;#58; Genes|Genomes|Genetics, 5(6), 1095–1105.

By: A. Hulse-Kemp*, H. Ashrafi*, K. Stoffel*, X. Zheng*, C. Saski*, B. Scheffler*, D. Fang*, Z. Chen* ...

author keywords: SNP genotyping; cotton genomics; resequencing; BAC-derived SNPs; intraspecific
MeSH headings : Base Sequence; Chromosome Mapping / methods; Chromosomes, Artificial, Bacterial / genetics; Cluster Analysis; Computer Simulation; Contig Mapping; Data Mining; Diploidy; Genetic Linkage; Genetic Loci; Genetic Markers; Genome, Bacterial; Gossypium / genetics; Heterozygote; Homozygote; Molecular Sequence Annotation; Phylogeny; Polymorphism, Single Nucleotide / genetics; Polyploidy; Principal Component Analysis; Sequence Analysis, DNA / methods; Species Specificity
TL;DR: The mapping results validated the approach for reliably producing large numbers of both intraspecific and interspecific SNPs aligned to BAC-ends, which will allow for future construction of high-density integrated physical and genetic maps for cotton and other complex polyploid genomes. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2015 journal article

Characterization of early blight resistance in a recombinant inbred line population of tomato: I. Heritability and trait correlations

Advanced Studies in Biology, 7, 131–148.

By: M. Foolad & H. Ashrafi

TL;DR: A recombinant inbred line (RIL) population of tomato was used, previously developed from a cross between S. pimpinellifolium accession LA 2093 and S. lycopersicum tomato breeding line NCEBR-1, to determine the inheritance of EB resistance. (via Semantic Scholar)
Sources: NC State University Libraries, ORCID, NC State University Libraries
Added: November 6, 2018

2015 journal article

Characterization of early blight resistance in a recombinant inbred line population of tomato: II. Identification of QTLs and their co-localization with candidate resistance genes

Advanced Studies in Biology, 7, 149–168.

By: H. Ashrafi & M. Foolad

TL;DR: The goals of this study were to identify quantitative trait loci (QTLs) conferring resistance to EB in a resistant accession (LA 2093) of the tomato wild 150 and discover putative candidate resistance genes and expressed sequence tags (ESTs) that co-localize with the QTLs. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Source: ORCID
Added: December 6, 2018

2015 journal article

Detached-Leaflet Evaluation of Tomato Germplasm for Late Blight Resistance and Its Correspondence to Field and Greenhouse Screenings

Plant Disease, 99(5), 718–722.

By: M. Foolad*, M. Sullenberger* & H. Ashrafi*

TL;DR: The results indicate the utility of the detached-leaflet assay for evaluating tomato for LB resistance, which may facilitate screening of large breeding populations in field or greenhouse conditions using whole plants. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2015 journal article

Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L)

G3 Gene| Genomes| Genetics, 5, 1187–1209.

By: A. Hulse-Kemp, J. Lemm, J. Plieske, H. Ashrafi & R. Buyyarapu

Source: NC State University Libraries
Added: November 1, 2018

2015 speech

Full-Length Transcriptome Sequencing Using PacBio Sequencing in Blueberry

Yow, A. G., Guo, W., & Ashrafi, H. (2015, November). Poster presented at the NCSU CALS Stewards of the Future Conference, Raleigh, NC.

By: A. Yow, W. Guo & H. Ashrafi

Event: NCSU CALS Stewards of the Future Conference at Raleigh, NC

Source: NC State University Libraries
Added: November 1, 2018

2015 journal article

Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species

G3-GENES GENOMES GENETICS, 5(11), 2341–2355.

By: T. Hill*, H. Ashrafi n, S. Chin-Wo*, K. Stoffel*, M. Truco*, A. Kozik*, R. Michelmore*, A. Van Deynze*

author keywords: GeneChip; Pseudolinkage; Solanum tuberosum; Solanum lycopersicum Solanaceae genomics
MeSH headings : Capsicum / classification; Capsicum / genetics; Chromosome Breakpoints; Genetic Linkage; Genetic Speciation; Genome, Plant; Polymorphism, Single Nucleotide; Recombination, Genetic; Solanum / classification; Solanum / genetics; Synteny; Transcriptome
TL;DR: Two ultradense genetic linkage maps for pepper are developed from single-position polymorphisms identified de novo with a 30,173 unigene pepper genotyping array and show the presence of previously known translocations and a translocation event that was not observed in previous genetic maps of pepper. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2015 speech

Using spinach to compare technologies for whole genome assemblies

Presented at the Plant and Animal Genome XXIII Conference.

By: H. Ashrafi

Event: Plant and Animal Genome XXIII Conference

Source: NC State University Libraries
Added: November 6, 2018

2014 journal article

Cosegregates with QTL for Resistance to in Pepper ()

The Plant Genome, 7(2), 0.

By: W. Rehrig*, H. Ashrafi*, T. Hill*, J. Prince* & A. Deynze*

TL;DR: CaDMR1, a homoserine kinase (HSK), is described as a candidate gene responsible for the major QTL on chromosome P5 for resistance to Pc, and SNP markers for the resistant allele were validated to facilitate gene pyramiding schemes for recurrent selection in pepper. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2014 speech

Deciphering Resistance to Phytophthora capsici in Pepper

Deynze, A. V., Hill, T., Ashrafi, H., Kozik, A., Chin-Wo, S. R., & Rehrig, W. Z. (2014, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: A. Deynze, T. Hill, H. Ashrafi, A. Kozik, S. Chin-Wo & W. Rehrig

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2014 journal article

Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts

BMC Genomics, 15(1), 945.

By: A. Hulse-Kemp*, H. Ashrafi*, X. Zheng*, F. Wang*, K. Hoegenauer*, A. Maeda*, S. Yang*, K. Stoffel* ...

author keywords: Cotton; Gossypium barbadense; Gossypium tomentosum; Gossypium mustelinum; Gossypium armourianum; Gossypium longicalyx; RNA-seq; Interspecific SNP
MeSH headings : Breeding; Chromosome Mapping; Chromosomes, Plant; Computational Biology; Crosses, Genetic; Genes, Plant; Genetic Markers; Genome, Plant; Genotyping Techniques; Gossypium / genetics; Polymorphism, Single Nucleotide; Reproducibility of Results; Sequence Deletion; Transcriptome
TL;DR: Using transcriptome sequencing, the first gene-associated single nucleotide polymorphism (SNP) markers for wild cotton species G. hirsutum will allow for the first high-density mapping of genes from five wild species that affect traits of interest, including beneficial agronomic and fiber characteristics. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2014 journal article

Genome sequence of the hot pepper provides insights into the evolution of pungency in <i>Capsicum</i> species

Nature Genetics, 46(3), 270–278.

By: S. Kim*, M. Park*, S. Yeom*, Y. Kim*, J. Lee*, H. Lee*, E. Seo*, J. Choi* ...

MeSH headings : Capsaicin / metabolism; Capsicum / genetics; Capsicum / growth & development; Capsicum / metabolism; Evolution, Molecular; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genetic Variation; Genome Size; Genome, Plant; Solanum lycopersicum / genetics; Metabolic Networks and Pathways / genetics; Molecular Sequence Data; Multigene Family; RNA, Plant / genetics; Species Specificity
TL;DR: The genome size of the hot pepper was approximately fourfold larger than that of its close relative tomato, and the genome showed an accumulation of Gypsy and Caulimoviridae family elements. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: November 6, 2018

2014 speech

Increasing Gossypium hirsutum Intraspecific SNPs via Genomic Sequencing

Deynze, A. V., Stelly, D., Ashrafi, H., Hulse, A. M., & Jones, D. C. (2014, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: A. Deynze, D. Stelly, H. Ashrafi, A. Hulse & D. Jones

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2014 journal article

QTL Mapping of Fruit Rot Resistance to the Plant Pathogen Phytophthora capsici in a Recombinant Inbred Line Capsicum annuum Population

Phytopathology, 104(5), 479–483.

By: R. Naegele*, H. Ashrafi*, T. Hill*, S. Chin-Wo*, A. Deynze* & M. Hausbeck*

MeSH headings : Capsicum / genetics; Capsicum / parasitology; Chromosome Mapping; Crosses, Genetic; Disease Resistance; Fruit / genetics; Fruit / parasitology; Genetic Linkage; Genetic Markers; Host-Pathogen Interactions; Inbreeding; Phenotype; Phytophthora / physiology; Plant Diseases / parasitology; Quantitative Trait Loci / genetics; Species Specificity
TL;DR: The partial fruit rot resistance from CM334 suggests that this may not be an ideal source for Fruit rot resistance in pepper, and mapping of fruit traits showed potential linkage with few disease resistance QTL. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2014 speech

SNP marker discovery for tomato breeding using Genotyping-by-Sequencing (GBS)

Ashrafi, H., Ohlson, E. W., Sullenberger, M. T., Stoffel, K., Masoudi, M., Deynze, A. V., & Foolad, M. (2014, September). Presented at the Tomato Breeders Round Table, NC State University, Fletcher, NC.

By: H. Ashrafi, E. Ohlson, M. Sullenberger, K. Stoffel, M. Masoudi, A. Deynze, M. Foolad

Event: Tomato Breeders Round Table, NC State University at Fletcher, NC

Source: NC State University Libraries
Added: November 1, 2018

2013 journal article

An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce

G3&Amp;#58; Genes|Genomes|Genetics, 3(4), 617–631.

By: M. Truco*, H. Ashrafi*, A. Kozik*, H. Leeuwen*, J. Bowers*, S. Wo*, K. Stoffel*, H. Xu* ...

author keywords: Lactuca sativa; microarray; linkage analysis; recombination
MeSH headings : Chromosome Mapping; Genetic Linkage; Genetic Markers; Genome, Plant; Lettuce / genetics; Oligonucleotide Array Sequence Analysis; Phenotype
TL;DR: An ultra-high-density genetic map for lettuce, an economically important member of the Compositae, consisting of 12,842 unigenes (13,943 markers) mapped in 3696 genetic bins distributed over nine chromosomal linkage groups is generated. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: ORCID
Added: December 6, 2018

2013 journal article

Characterization of Capsicum annuum Genetic Diversity and Population Structure Based on Parallel Polymorphism Discovery with a 30K Unigene Pepper GeneChip

PLoS ONE, 8(2), e56200.

By: T. Hill*, H. Ashrafi*, S. Reyes-Chin-Wo*, J. Yao*, K. Stoffel*, M. Truco*, A. Kozik*, R. Michelmore*, A. Deynze*

Ed(s): J. Zhang

MeSH headings : Capsicum / genetics; DNA Copy Number Variations / genetics; Gene Frequency; Genes, Plant / genetics; Genetic Loci / genetics; Hybridization, Genetic / genetics; Oligonucleotide Array Sequence Analysis / methods; Polymorphism, Single Nucleotide
TL;DR: This research demonstrates the effectiveness of parallel high-throughput discovery and application of genome-wide transcript-based markers to assess genetic and genomic features among Capsicum annuum. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2013 speech

Genome-wide SNP Development and Validation for Intraspecific SNPs in Upland Cotton

Hulse, A. M., Hoegenauer, K. A., Ashrafi, H., Wang, F., Stelly, D., Deynze, A. V., … Jones, D. C. (2013, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: A. Hulse, K. Hoegenauer, H. Ashrafi, F. Wang, D. Stelly, A. Deynze, L. Hinze, J. Yu ...

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2013 journal article

Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific Capsicum RIL population

Genome, 56(1), 61–74.

By: S. Yarnes*, H. Ashrafi*, S. Reyes-Chin-Wo*, T. Hill*, K. Stoffel* & A. Deynze*

Ed(s): P. Gulick

author keywords: Capsicum frutescens; Capsicum annuum; pepper; phenology; capsaicinoids; fruit quality
MeSH headings : Capsaicin / analysis; Capsicum / chemistry; Capsicum / genetics; Crosses, Genetic; Expressed Sequence Tags; Fruit / genetics; Genes, Plant; Inbreeding; Phenotype; Physical Chromosome Mapping; Quantitative Trait Loci
TL;DR: Twenty-one loci showed correlation among seemingly unrelated phenotypic categories, highlighting tight linkage or shared genetics between previously unassociated traits in pepper. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2013 journal article

Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing

G3&Amp;#58; Genes|Genomes|Genetics, 3(10), 1809–1818.

By: J. Page*, M. Huynh*, Z. Liechty*, K. Grupp*, D. Stelly, A. Hulse, H. Ashrafi*, A. Deynze*, J. Wendel*, J. Udall*

author keywords: cotton fiber; comparative genomics; molecular evolution; allopolyploid
MeSH headings : Diploidy; Evolution, Molecular; Genome, Plant; Gossypium / genetics; Polymorphism, Single Nucleotide; Polyploidy; Sequence Analysis, DNA; Sequence Deletion
TL;DR: A comparative analysis using deep re-sequencing of multiple accessions of each diploid species and identified 24 million SNPs between the A-diploid and D-Diploid genomes facilitated the construction of a robust index of conserved SNPs at all detected polymorphic loci, widely applicable for read mapping efforts of other diploids and allopolyploid Gossypium accessions. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2013 speech

Resolving Tight Linkages Around Renlon by MAS for High-resolution Recombination in Chromosome-11

Zheng, X., Wang, F., Hoegenauer, K. A., Quintana, J., Ashrafi, H., Stelly, D., … Nichols, R. L. (2013, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: X. Zheng, F. Wang, K. Hoegenauer, J. Quintana, H. Ashrafi, D. Stelly, A. Bell, A. Deynze, D. Jones, R. Nichols

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2013 article

Structural Genomics

Deynze, A. V., Hill, T., & Ashrafi, H. (2013, January). Genetics, Genomics, and Breeding of Tomato, pp. 327–344.

By: A. Deynze, T. Hill & H. Ashrafi

Source: ORCID
Added: December 6, 2018

2012 speech

Collaborative Development of SNPs for Cotton Research, Introgression, MAS and Breeding. Genome-Wide Gossypium SNP Development and Validation

Wang, F., Hulse, A. M., Hoegenauer, K., Stelly, D. M., Ashrafi, H., Deynze, A. V., & Yu, J. Z. (2012, January). Presented at the Cotton Improvement Conference, Beltwide Cotton Conferences. http://www.cotton.org/beltwide/index.cfm?page=beltwide_overview

By: F. Wang, A. Hulse, K. Hoegenauer, D. Stelly, H. Ashrafi, A. Deynze, J. Yu

Event: Cotton Improvement Conference, Beltwide Cotton Conferences

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Comparison and evaluation of cotton SNPs developed by transcriptome, genome reduction on restriction site conservation and RAD-based sequencing

Ashrafi, H. (2012, October). Presented at the International Cotton Genome Initiative (ICGI) Research Conference, Raleigh, North Carolina, USA.

By: H. Ashrafi

Event: International Cotton Genome Initiative (ICGI) Research Conference at Raleigh, North Carolina, USA

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Comparisons of high-density EST-based maps in pepper species

Hill, T., Ashrafi, H., Reyes-Chin-Wo, S., Romero, M. S., Kozik, A., & Deynze, A. V. (2012, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XX), San Diego, CA.

By: T. Hill, H. Ashrafi, S. Reyes-Chin-Wo, M. Romero, A. Kozik & A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2012 journal article

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

BMC Genomics, 13(1), 571.

By: H. Ashrafi*, T. Hill*, K. Stoffel*, A. Kozik*, J. Yao*, S. Chin-Wo*, A. Deynze*

author keywords: Pepper; Capsicum spp; Molecular Markers; EST; Transcriptome; RNAseq; Annotation; SNP; SSR; SPP
MeSH headings : Capsicum / genetics; Capsicum / metabolism; DNA Shuffling / methods; Databases, Genetic; Expressed Sequence Tags; Genetic Association Studies / methods; Genotype; Microsatellite Repeats / genetics; Molecular Sequence Annotation; Polymorphism, Single Nucleotide / genetics; Proteomics / methods; Transcriptome / genetics
TL;DR: NGS was applied to three pepper genotypes: Maor, Early Jalapeño and Criollo de Morelos-334 (CM334) to identify SNPs and SSRs in the assembly of these three genotypes to generate thousands of high-quality molecular markers that could be used in breeding programs. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2012 journal article

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)

BMC Genomics, 13(1), 185.

By: K. Stoffel*, H. Leeuwen*, A. Kozik*, D. Caldwell*, H. Ashrafi*, X. Cui*, X. Tan*, T. Hill* ...

MeSH headings : Algorithms; Chromosome Mapping / methods; DNA, Plant / genetics; Expressed Sequence Tags; Genes, Plant; Genome, Plant; Lettuce / genetics; Oligonucleotide Array Sequence Analysis / methods; Phylogeny; Polymorphism, Single Nucleotide
Source: ORCID
Added: December 6, 2018

2012 speech

Genome-Wide Gossypium SNP Development and Validation

Wang, F., Hulse, A. M., Hoegenauer, K., Stelly, D. M., Ashrafi, H., Deynze, A. V., & Yu, J. (2012, January). Presented at the Cotton Improvement Conference, Beltwide Cotton Conferences. http://www.cotton.org/beltwide/index.cfm?page=beltwide_overview

By: F. Wang, A. Hulse, K. Hoegenauer, D. Stelly, H. Ashrafi, A. Deynze, J. Yu

Event: Cotton Improvement Conference, Beltwide Cotton Conferences

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Genome-wide SNP development and validation for allotetraploid Gossypium

Hulse, A. M., Wang, F., Hoegenauer, K., Stelly, D. M., Ashrafi, H., Deynze, A. V., … Jones, D. C. (2012, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XX), San Diego, CA.

By: A. Hulse, F. Wang, K. Hoegenauer, D. Stelly, H. Ashrafi, A. Deynze, J. Yu, J. Chen, J. Udall, D. Jones

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Genome-wide SNP discovery from de novo assemblies of pepper (Capsicum annuum) transcriptomes

Ashrafi, H., Yao, J., Stoffel, K., Reyes-Chin-Wo, S., Hill, T., Kozik, A., & Van Deynze, A. (2012, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XX), San Diego, CA.

By: H. Ashrafi, J. Yao, K. Stoffel, S. Reyes-Chin-Wo, T. Hill, A. Kozik, A. Van Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2012 journal article

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

Nature, 492(7429), 423–427.

By: A. Paterson*, J. Wendel*, H. Gundlach*, H. Guo*, J. Jenkins*, D. Jin*, D. Llewellyn*, K. Showmaker* ...

MeSH headings : Alleles; Biological Evolution; Cacao / genetics; Chromosomes, Plant / genetics; Cotton Fiber; Diploidy; Gene Duplication / genetics; Genes, Plant / genetics; Genome, Plant / genetics; Gossypium / classification; Gossypium / genetics; Molecular Sequence Annotation; Phylogeny; Polyploidy; Vitis / genetics
TL;DR: It is shown that an abrupt five- to sixfold ploidy increase approximately 60 million years (Myr) ago, and allopolyploidy reuniting divergent Gossypium genomes approximately 1–2 Myr ago, conferred about 30–36-fold duplication of ancestral angiosperm genes in elite cottons, genetic complexity equalled only by Brassica among sequenced angiosperms. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018

2012 journal article

Selective genotyping to identify late blight resistance genes in an accession of the tomato wild species Solanum pimpinellifolium

Euphytica, 187(1), 63–75.

By: H. Merk*, H. Ashrafi* & M. Foolad*

author keywords: Disease resistance; Phytophthora infestans; Qualitative resistance; Solanum pimpinellifolium; Trait-based analysis; Tomato; Resistance breeding; Vertical resistance
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: ORCID
Added: December 6, 2018

2012 journal article

Uniform ripening Encodes a Golden 2-like Transcription Factor Regulating Tomato Fruit Chloroplast Development

Science, 336(6089), 1711–1715.

By: A. Powell*, C. Nguyen*, T. Hill*, K. Cheng*, R. Figueroa-Balderas*, H. Aktas*, H. Ashrafi*, C. Pons* ...

MeSH headings : Chloroplasts / genetics; Chloroplasts / physiology; Chromosome Mapping; Chromosomes, Plant; Fruit / genetics; Fruit / growth & development; Solanum lycopersicum / genetics; Solanum lycopersicum / growth & development; Phenotype; Plant Proteins / genetics; Plant Proteins / physiology; Transcription Factors / genetics; Transcription Factors / physiology
TL;DR: The uniform ripening mutation turns out to disable a transcription factor called Golden 2-like (GLK2), which increases the fruit's photosynthetic capacity, resulting in higher sugar content and suggesting that selection of u inadvertently compromised ripe fruit quality in exchange for desirable production traits. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2011 speech

An Integrated approach to breeding resistance to Phytophthora capsici In Pepper

Deynze, A. V., Hill, T. A., Yarnes, S., Rehrig, W. Z., Chin-Wo, S. R., Ashrafi, H., … Prince, J. (2011, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XIX), San Diego, CA.

By: A. Deynze, T. Hill, S. Yarnes, W. Rehrig, S. Chin-Wo, H. Ashrafi, R. Adamchak, A. Kozik, J. Prince

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XIX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2011 speech

Comparisons of high-density EST-based maps in pepper species

Hill, T., Ashrafi, H., Chin-Wo, S. R.-, Romero, M. S., Deynze, A. V., & Kozik, A. (Aug. 6-10, 2011Aug. 6-10, 2011). Presented at the Plant Biology, American Society of Plant Biologists, Minneapolis, MN.

By: T. Hill, H. Ashrafi, S. Chin-Wo, M. Romero, A. Deynze & A. Kozik

Event: Plant Biology, American Society of Plant Biologists at Minneapolis, MN

Source: NC State University Libraries
Added: November 1, 2018

2011 journal article

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

BMC Genomics, 12(1).

MeSH headings : Contig Mapping; DNA, Plant / genetics; Daucus carota / genetics; Expressed Sequence Tags; Gene Expression Profiling / methods; Genes, Plant; Genetic Markers; Genetic Variation; Genotype; Introns; Molecular Sequence Annotation; Polymorphism, Single Nucleotide; Sequence Analysis, DNA / methods; Transcriptome
TL;DR: This study confirmed the potential of short read platforms for de novo EST assembly and identification of genetic polymorphisms in carrot, and produced the first large-scale transcriptome of carrot, a species lacking genomic resources. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2011 speech

Development and Application of Genomic Tools in Pepper

Deynze, A. V., Hill, T., Prince, J., Yarnes, S., Chunthawodtiporn, J., Rehrig, W., … Kozik, A. (2011, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XIX), San Diego, CA.

By: A. Deynze, T. Hill, J. Prince, S. Yarnes, J. Chunthawodtiporn, W. Rehrig, S. Reyes-Chin-wo, H. Ashrafi, A. Kozik

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XIX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2011 journal article

Identification of novel quantitative trait loci for increased lycopene content and other fruit quality traits in a tomato recombinant inbred line population

Molecular Breeding, 30(1), 549–567.

By: H. Ashrafi*, M. Kinkade*, H. Merk* & M. Foolad*

author keywords: Carotenoids; Molecular markers; QTL mapping; Recombinant inbred lines; Solanum lycopersicum; Solanum pimpinellifolium
TL;DR: Among the QTL identified for lycopene, two QTL, located on chromosomes 7 and 12, had very large effects and were consistent across generations, indicating that these QTL may represent novel alleles with potentially important implications for tomato breeding as well as increased understanding of carotenoid accumulation in tomato. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2011 speech

The Genetic Map and Genome Sequencing of Lettuce

Deynze, A. V., Hill, T., Prince, J., Yarnes, S., Chunthawodtiporn, J., Rehrig, W., … Kozik, A. (2011, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XIX), San Diego, CA.

By: A. Deynze, T. Hill, J. Prince, S. Yarnes, J. Chunthawodtiporn, W. Rehrig, S. Reyes-Chin-wo, H. Ashrafi, A. Kozik

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XIX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2010 speech

Ultra High Density EST-Based Maps Reveal Genome Differences Between C. frutescence And C. annuum

Hill, T., Ashrafi, H., Kozik, A., & Deynze, A. V. (2010, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVIII), San Diego, CA.

By: T. Hill, H. Ashrafi, A. Kozik & A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVIII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 journal article

A new genetic linkage map of tomato based on a Solanum lycopersicum × S. pimpinellifolium RIL population displaying locations of candidate pathogen response genes

Genome, 52(11), 935–956.

By: H. Ashrafi*, M. Kinkade* & M. Foolad*

Ed(s): P. Gulick

author keywords: candidate resistance gene; cleaved amplified polymorphic sequence (CAPS); conserved ortholog set (COS); expressed sequence tag (EST); genetic map; genetic marker; restriction fragment length polymorphism (RFLP); simple sequence repeat (SSR)
MeSH headings : Breeding; Chromosome Mapping; Chromosomes, Plant / genetics; Crosses, Genetic; DNA, Plant / genetics; Expressed Sequence Tags; Genes, Plant; Genetic Linkage; Genetic Variation; Minisatellite Repeats / genetics; Plant Diseases / genetics; Polymorphism, Restriction Fragment Length; Quantitative Trait Loci / genetics; Solanum / genetics
TL;DR: A new recombinant inbred line (RIL) population is developed from a cross between LA2093 and an advanced tomato breeding line (NCEBR-1) and a medium-density molecular linkage map is constructed of this population using 294 polymorphic markers, including standard RFLPs, EST sequences, and CAPS, CAPs, and SSRs to facilitate identification, genetic exploitation, and positional cloning of important genes or quantitative trait loci. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: ORCID
Added: December 6, 2018

2009 speech

Construction of an Ultra High Density Genetic Map of Lettuce using an Affymetrix GeneChip

Kozik, A., Leeuwen, H., Truco, M. J., Stoffel, K., McHale, L., Ashrafi, H., … Michelmore, R. W. (2009, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: A. Kozik, H. Leeuwen, M. Truco, K. Stoffel, L. McHale, H. Ashrafi, D. Lavelle, X. Cui, A. Deynze, R. Michelmore

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

Development and Utilization of a High Density 6.6 Million Feature Affymetrix GeneChip for Marker Discovery and Genotyping in Lettuce

Leeuwen, H., Stoffel, K., Truco, M. J., Ashrafi, H., Cui, X., Kozik, A., … Deynze, A. V. (2009, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: H. Leeuwen, K. Stoffel, M. Truco, H. Ashrafi, X. Cui, A. Kozik, R. Michelmore, A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

High-Density Mapping of the Lettuce Genome with SFP Markers in over 15,000 Unigenes

Leeuwen, H., Stoffel, K., Kozik, A., Cui, X., Ashrafi, H., McHale, L., … Michelmore, R. W. (2009, January). Presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: H. Leeuwen, K. Stoffel, A. Kozik, X. Cui, H. Ashrafi, L. McHale, D. Lavelle, G. Wong ...

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

The Application of a Whole Genome Pepper Array to Identify SFPs in a Diversity Panel

Ashrafi, H., Hill, T., Yao, J., Leeuwen, H., Michelmore, R., Kozik, A., & Deynze, A. V. (2009, January). Invited presentation in Solanaceae workshop presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: H. Ashrafi, T. Hill, J. Yao, H. Leeuwen, R. Michelmore, A. Kozik, A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

The Application of a Whole Genome Pepper Array to Solanaceae Crops

Hill, T., Ashrafi, H., Yao, J., Jong, W. D., Francis, D., Kozik, A., & Deynze, A. V. (2009, October). Presented at the Cologne, Germany.

By: T. Hill, H. Ashrafi, J. Yao, W. Jong, D. Francis, A. Kozik, A. Deynze

Event: at Cologne, Germany

Source: NC State University Libraries
Added: November 1, 2018

2008 journal article

A Solanum lycopersicum × Solanum pimpinellifolium Linkage Map of Tomato Displaying Genomic Locations of R-Genes, RGAs, and Candidate Resistance/Defense-Response ESTs

International Journal of Plant Genomics, 2008, 1–18.

By: A. Sharma*, L. Zhang*, D. Niño-Liu*, H. Ashrafi* & M. Foolad*

TL;DR: A linkage map based on an F2 population of a cross between LA2093 and a tomato breeding line, using 115 RFLP, 94 EST, and 41 RGA markers, suggesting that candidate-gene approach may be effective in identifying and mapping new R genes. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2008 journal article

Genetics, Genomics and Breeding of Late Blight and Early Blight Resistance in Tomato

Critical Reviews in Plant Sciences, 27(2), 75–107.

By: M. Foolad*, H. Merk* & H. Ashrafi*

author keywords: disease resistance; horizontal resistance; pathogenicity; R-gene; QTL; Solanum lycopersicum; S. pimpinellifolium; vertical resistance
TL;DR: This review will focus on the current knowledge of both LB and EB with respect to the causal pathogens, host resistances, and genetics and breeding progresses. (via Semantic Scholar)
Source: ORCID
Added: December 6, 2018

2007 speech

HPLC and spectrophotometer analyses of fruit carotenoids In a Lycopersicon esculentum X L. pimpinellifolium RIL population reveals several new QTLs for lycopene content

Ashrafi, H., Kinkade, M. R., & Foolad, M. R. (2007, January). Presented at the The International Conference on the Status of Plant and Animal Genome Research, PAG XV, San Diego, CA.

By: H. Ashrafi, M. Kinkade & M. Foolad

Event: The International Conference on the Status of Plant and Animal Genome Research, PAG XV at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2007 speech

Identification and molecular mapping of a new dominant gene (Ph5) conferring broad-spectrum resistance against tomato late blight

Merk, H. L., Ashrafi, H., Kinkade, M. P., & Foolad, M. R. (2007, January). Presented at the The International Conference on the Status of Plant and Animal Genome Research, PAG XV, San Diego, CA.

By: H. Merk, H. Ashrafi, M. Kinkade & M. Foolad

Event: The International Conference on the Status of Plant and Animal Genome Research, PAG XV at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

A molecular linkage map of tomato based on RFLP markers and candidate disease-resistance/defense-response genes in an F7 RIL population

Ashrafi, H., Lin, G. Y., & Foolad, M. R. (2006, March). Poster presented at the Graduate Research Exposition, College of Ag. Sciences, The Pennsylvania State University, University Park, PA.

By: H. Ashrafi, G. Lin & M. Foolad

Event: Graduate Research Exposition, College of Ag. Sciences, The Pennsylvania State University at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

Identification of QTLs for tomato early blight resistance in a RIL population of a cross between Lycopersicon esculentum and L. pimpinellifolium

Ashrafi, H., Lin, G. Y., & Foolad, M. R. (2006, April). Poster presented at the Pennsylvania State University Genetics Symposium, University Park, PA.

By: H. Ashrafi, G. Lin & M. Foolad

Event: Pennsylvania State University Genetics Symposium at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2006 conference paper

Identification of new sources of late blight resistance in tomato and mapping of a new resistance gene

Foolad, M. R., Merk, H. L., Ashrafi, H., & Kinkade, M. P. (Nov. 9-10, 2006). Proc. 21st Annual Tomato Disease Workshop. Fletcher, NC: NC State University.

By: M. Foolad, H. Merk, H. Ashrafi & M. Kinkade

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

Mapping of early blight resistance QTLs and candidate resistance genes in a RIL population of tomato

Ashrafi, H., Sharma, A., Kole, C., Merk, H., Lin, G. Y., & Foolad, M. R. (2006, January). Poster presented at the The XIV International Conference on the Status of Plant and Animal Genome Research (PAG XIV), San Diego, CA.

By: H. Ashrafi, A. Sharma, C. Kole, H. Merk, G. Lin & M. Foolad

Event: The XIV International Conference on the Status of Plant and Animal Genome Research (PAG XIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

Toward identification and mapping of new late blight resistance genes in tomato

Merk, H. L., Ashrafi, H., Kole, C., Kinkade, M., Lin, G. Y., & Foolad, M. R. (2006, April). Poster presented at the 2006 Pennsylvania State University Genetics Symposium, University Park, PA.

By: H. Merk, H. Ashrafi, C. Kole, M. Kinkade, G. Lin & M. Foolad

Event: 2006 Pennsylvania State University Genetics Symposium at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2005 journal article

(13) Comparative Mapping of Early Blight Resistance QTLs and Candidate Resistance Genes in F2, F3, F4 and a RIL Population of Tomato

HortScience, 40(4), 1040.

By: H. Ashrafi, A. Sharma, D. Niño-Liu, L. Zhang & M. Foolad

Source: NC State University Libraries
Added: November 1, 2018

2005 speech

Comparative mapping of early blight resistance QTLs and candidate resistance genes in F2, F3, F4 and a RIL population of Tomato

Poster presented at the 2005 ASHS Annual International Conference, Las Vegas.

By: H. Ashrafi, A. Sharma, D. Niño-Liu, L. Zhang & M. Foolad

Event: 2005 ASHS Annual International Conference at Las Vegas

Source: NC State University Libraries
Added: November 1, 2018

2005 speech

Genetic mapping of candidate resistance genes in tomato using an F2 and a RIL population of a Lycopersicon esculentum × L. pimpinellifolium cross

Ashrafi, H., Sharma, A., Niño-Liu, D., & Foolad, M. R. (2005, March). Presented at the Graduate Research Exposition, College of Agricultural Sciences, The Pennsylvania State University, University Park, PA.

By: H. Ashrafi, A. Sharma, D. Niño-Liu & M. Foolad

Event: Graduate Research Exposition, College of Agricultural Sciences, The Pennsylvania State University at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2005 journal article

Genetics and Breeding of Early Blight Resistance in Tomato

HortScience, 40, 1114–1114.

By: M. Foolad, A. Sharma, H. Ashrafi & G. Lin

Source: NC State University Libraries
Added: November 1, 2018

2005 speech

Genetics of early blight resistance in tomato

Sharma, A., Ashrafi, H., & Foolad, M. R. (2005, January). Poster presented at the The International Conference on the Status of Plant and Animal Genome Research, PAG XIII, San Diego.

By: A. Sharma, H. Ashrafi & M. Foolad

Event: The International Conference on the Status of Plant and Animal Genome Research, PAG XIII at San Diego

Source: NC State University Libraries
Added: November 1, 2018

2004 speech

Early blight resistance in tomato: genetics, breeding and accelerated breeding

R., F. M., Sharma, A., & Ashrafi, H. (2004, June). Poster presented at the First International Symposium in Tomato Diseases (ISTD) and 19th Annual Tomato Disease Workshop (ATDW), Orlando, FL.

By: F. R., A. Sharma & H. Ashrafi

Event: First International Symposium in Tomato Diseases (ISTD) and 19th Annual Tomato Disease Workshop (ATDW) at Orlando, FL

Source: NC State University Libraries
Added: November 1, 2018

2003 journal article

MOLECULAR CHARACTERIZATION OF OLIVE GERMPLASM IN IRAN BY USE OF RANDOM AMPLIFIED POLYMORPHIC DNA (RAPD) AND CORRELATION WITH PHENOTYPIC STUDIES: PRELIMINARY RESULTS

Acta Horticulturae, 7(623), 169–175.

By: S. Samaee, Z. Shobbar, H. Ashrafi*, M. Hosseini-Mazinani & M. Sheidai

author keywords: Olea europea L. Cultivars; Multivariate Analysis
Source: ORCID
Added: December 6, 2018

Employment

Updated: January 25th, 2023 08:51

2015 - present

NC State University Raleigh, NC, US
Associate Professor Horticultural Science

2008 - 2015

University of California Davis Davis, CA, US
Bioinformatics Scientist Plant Sciences

Education

Updated: October 18th, 2018 22:59

2007 - 2008

Pennsylvania State University Penn State World Campus University Park, PA, US
PhD Genetics Plant Sciences

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