Hudson Ashrafi

Breeding, Plant Breeding, Bioinformatics, Genetics, Cotton, Pepper, Tomato, Melon, Sponge Gourd

Works (108)

Updated: March 2nd, 2024 00:14

2023 journal article

Genome-wide association identifies key loci controlling blackberry postharvest quality

FRONTIERS IN PLANT SCIENCE, 14.

By: T. Chizk*, J. Clark*, C. Johns*, L. Nelson*, H. Ashrafi n, R. Aryal n, M. Worthington*

co-author countries: United States of America 🇺🇸
author keywords: firmness; red drupelet reversion; GWAS; polygalacaturonase; pectin methylesterase (PME); Rubus; polyploidy
Sources: Web Of Science, ORCID
Added: July 3, 2023

2022 journal article

A chromosome-length genome assembly and annotation of blackberry (Rubus argutus, cv. “Hillquist”)

G3 Genes|Genomes|Genetics, 11.

co-author countries: Australia 🇦🇺 China 🇨🇳 Finland 🇫🇮 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Italy 🇮🇹 Norway 🇳🇴 United States of America 🇺🇸

Ed(s): T. Pyhäjärvi

author keywords: Rubus; blackberry; Rosaceae; Rosoideae; biennial flowering; annual flowering; primocane-fruiting; chromosome-length genome assembly; Hi-C; annotation; repetitive content
MeSH headings : Rubus / genetics; Tetraploidy; Plant Breeding; Chromosome Mapping; Chromosomes, Plant / genetics; Molecular Sequence Annotation
Sources: Web Of Science, ORCID, Crossref
Added: December 16, 2022

2022 article

A first complete phylogenomic hypothesis for diploid blueberries (Vaccinium section Cyanococcus)

Crowl, A. A., Fritsch, P. W., Tiley, G. P., Lynch, N. P., Ranney, T. G., Ashrafi, H., & Manos, P. S. (2022, October 17). AMERICAN JOURNAL OF BOTANY, Vol. 10.

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
author keywords: alleles; Ericaceae; homoploid hybridization; HybSeq; phasing; phylogenetics; target enrichment; Vaccinium
MeSH headings : Phylogeny; Diploidy; Blueberry Plants; Vaccinium; Polyploidy
Sources: Web Of Science, ORCID
Added: October 31, 2022

2022 article

Autopolyploid inheritance and a heterozygous reciprocal translocation shape chromosome genetic behavior in tetraploid blueberry (Vaccinium corymbosum)

Mengist, M. F., Bostan, H., De Paola, D., Teresi, S. J., Platts, A. E., Cremona, G., … Iorizzo, M. (2022, September 3). NEW PHYTOLOGIST, Vol. 9.

By: M. Mengist n, H. Bostan n, D. De Paola*, S. Teresi*, A. Platts*, G. Cremona*, X. Qi*, T. Mackey* ...

co-author countries: Italy 🇮🇹 New Zealand 🇳🇿 United States of America 🇺🇸
author keywords: autopolyploid; blueberry (Vaccinium corymbosum L; ); centromeric repeat; chromosomal translocation; chromosome structure; phased genome; polyploid genetic behavior
MeSH headings : Tetraploidy; Blueberry Plants / genetics; Inheritance Patterns; Polyploidy; Chromosomes
Sources: ORCID, Web Of Science
Added: September 4, 2022

2022 article

Identification of late blight resistance quantitative trait loci in Solanum pimpinellifolium accession PI 270441

Sullenberger, M. T., Jia, M., Gao, S., Ashrafi, H., & Foolad, M. R. (2022, August 12). PLANT GENOME, Vol. 8.

By: M. Sullenberger*, M. Jia*, S. Gao*, H. Ashrafi n & M. Foolad*

co-author countries: United States of America 🇺🇸
MeSH headings : Quantitative Trait Loci; Solanum / genetics; Plant Diseases / genetics; Plant Breeding; Phytophthora infestans / genetics; Solanum lycopersicum / genetics; Solanum tuberosum / genetics
Sources: Web Of Science, ORCID
Added: August 29, 2022

2022 journal article

Nuclear DNA contents and ploidy levels of North American Vaccinium species and interspecific hybrids

SCIENTIA HORTICULTURAE, 297.

By: L. Redpath n, R. Aryal n, N. Lynch n, J. Spencer n, A. Hulse-Kemp n, J. Ballington n, J. Green*, N. Bassil* ...

co-author countries: United States of America 🇺🇸
author keywords: Blueberry; Vaccinium; Flowcytometry; Propidium iodide; K -mer analysis
Sources: Web Of Science, ORCID
Added: May 16, 2022

2022 journal article

RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry

FRONTIERS IN GENETICS, 12.

co-author countries: United States of America 🇺🇸
author keywords: Colletotrichum acutatum; Colletotrichum gloeosporioides; Fragaria x ananassa; rate-reducing resistance; gene regulatory network
Sources: Web Of Science, ORCID
Added: April 25, 2022

2022 journal article

There and back again; historical perspective and future directions for Vaccinium breeding and research studies

HORTICULTURE RESEARCH, 9.

co-author countries: Canada 🇨🇦 Italy 🇮🇹 New Zealand 🇳🇿 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: August 1, 2022

2021 article

An anchored chromosome-scale genome assembly of spinach improves annotation and reveals extensive gene rearrangements in euasterids

Hulse-Kemp, A. M., Bostan, H., Chen, S., Ashrafi, H., Stoffel, K., Sanseverino, W., … Van Deynze, A. (2021, June 10). PLANT GENOME, Vol. 6.

By: A. Hulse-Kemp n, H. Bostan n, S. Chen*, H. Ashrafi n, K. Stoffel*, W. Sanseverino*, L. Li*, S. Cheng* ...

co-author countries: China 🇨🇳 Spain 🇪🇸 United States of America 🇺🇸
MeSH headings : Chromosomes; Gene Rearrangement; Peronospora; Plant Breeding; Spinacia oleracea / genetics
Sources: Web Of Science, ORCID
Added: June 14, 2021

2021 journal article

An optimized protocol for stepwise optimization of real-time RT-PCR analysis

HORTICULTURE RESEARCH, 8(1).

By: F. Zhao*, N. Maren n, P. Kosentka n, Y. Liao n, H. Lu n, J. Duduit n, D. Huang n, H. Ashrafi n ...

co-author countries: China 🇨🇳 United States of America 🇺🇸
Sources: ORCID, Web Of Science
Added: August 1, 2021

2021 journal article

Detection of Fruit Meals Within Laboratory-Raised and Field-Trapped Adult Drosophila suzukii (Diptera: Drosophilidae) Guts

Frontiers in Ecology and Evolution, 9.

co-author countries: United States of America 🇺🇸
author keywords: spotted wing Drosophila; integrated pest management; invasive species; gut content; small fruit IPM
Sources: Web Of Science, ORCID, Crossref
Added: September 20, 2021

2021 journal article

Genome sequence of Monilinia vaccinii-corymbosi sheds light on mummy berry disease infection of blueberry and mating type

G3-GENES GENOMES GENETICS, 11(2).

By: A. Yow n, Y. Zhang*, K. Bansal*, S. Eacker, S. Sullivan, I. Liachko, M. Cubeta n, J. Rollins*, H. Ashrafi n

co-author countries: United States of America 🇺🇸

Ed(s): D. Baltrus

author keywords: blueberry; mummy berry; Monilinia vaccinii-corymbosi; Mvc; disease; blight; pathology; mating-type; effectors
MeSH headings : Ascomycota / genetics; Blueberry Plants; Fruit; North America; Plant Diseases / microbiology
Sources: ORCID, Web Of Science
Added: January 5, 2021

2021 journal article

Genotype, Environment, Year, and Harvest Effects on Fruit Quality Traits of Five Blueberry (Vaccinium corymbosum L.) Cultivars

AGRONOMY-BASEL, 11(9).

co-author countries: United States of America 🇺🇸
author keywords: blueberry; Vaccinium corymbosum; genotype by environment; fruit quality; Maker-Assisted-Selection
Sources: ORCID, Web Of Science
Added: September 8, 2021

2021 journal article

High-density linkage map construction and identification of loci regulating fruit quality traits in blueberry

HORTICULTURE RESEARCH, 8(1).

By: M. Mengist n, H. Bostan n, E. Young n, K. Kay*, N. Gillitt*, J. Ballington n, C. Kay n, M. Ferruzzi n ...

co-author countries: United States of America 🇺🇸
Sources: ORCID, Web Of Science
Added: August 1, 2021

2021 journal article

Reproductive developmental transcriptome analysis of Tripidium ravennae (Poaceae)

BMC GENOMICS, 22(1).

co-author countries: United States of America 🇺🇸
author keywords: Tripidium ravennae; Transcriptome sequencing; Differential gene expression; Next-generation sequencing; Floral transition; Flowering; Inflorescence development; Reproduction; RNA sequencing; Seed development
MeSH headings : Gene Expression Profiling; Gene Expression Regulation, Plant; Inflorescence; Plant Breeding; Poaceae
Sources: Web Of Science, ORCID
Added: July 19, 2021

2020 journal article

A Rosaceae Family-Level Approach To Identify Loci Influencing Soluble Solids Content in Blackberry for DNA-Informed Breeding

G3-GENES GENOMES GENETICS, 10(10), 3729–3740.

By: J. Zurn*, M. Driskill*, S. Jung*, D. Main*, M. Yin*, M. Clark*, L. Cheng*, H. Ashrafi n ...

co-author countries: United States of America 🇺🇸
author keywords: Fruit sweetness; Rubusspp; RosBREED; Marker-assisted breeding; Marker-assisted selection
MeSH headings : DNA; Fragaria / genetics; Fruit; Malus / genetics; Plant Breeding; Rosaceae / genetics; Rubus / genetics
Sources: Web Of Science, ORCID
Added: November 2, 2020

2020 journal article

Biomass yields, cytogenetics, fertility, and compositional analyses of novel bioenergy grass hybrids (Tripidium spp.)

GLOBAL CHANGE BIOLOGY BIOENERGY, 12(5), 361–373.

co-author countries: United States of America 🇺🇸
author keywords: bioenergy; bioprocessing; Erianthus; fertility; forage; lignocellulose; Miscanthus; plant breeding; polyploidy; reproductive biology; Saccharum; sterility; Tripidium
Sources: Web Of Science, ORCID
Added: April 6, 2020

2020 journal article

Simulated storage causes carbohydrate loss and rooting differences in two poinsettia cultivars

CANADIAN JOURNAL OF PLANT SCIENCE, 100(4), 459–462.

co-author countries: United States of America 🇺🇸
author keywords: cutting (unrooted); postharvest handling
Sources: Web Of Science, ORCID
Added: August 31, 2020

2019 journal article

3D point cloud data to quantitatively characterize size and shape of shrub crops

HORTICULTURE RESEARCH, 6.

By: Y. Jiang, C. Li*, F. Takeda*, E. Kramer*, H. Ashrafi n & J. Hunter*

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: July 15, 2019

2019 journal article

Sequencing-Based Bin Map Construction of a Tomato Mapping Population, Facilitating High-Resolution Quantitative Trait Loci Detection

PLANT GENOME, 12(1).

By: I. Gonda*, H. Ashrafi n, D. Lyon*, S. Strickler*, A. Hulse-Kemp*, Q. Ma*, H. Sun*, K. Stoffel* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Chromosome Mapping; Chromosomes, Plant; Genes, Plant; Genotyping Techniques; Lycopene / metabolism; Solanum lycopersicum / genetics; Polymorphism, Single Nucleotide / genetics; Quantitative Trait Loci; RNA, Plant; Recombination, Genetic; Sequence Analysis, RNA; cis-trans-Isomerases / metabolism
Sources: Web Of Science, ORCID
Added: April 2, 2019

2018 journal article

Breeding Trait Priorities of the Blueberry Industry in the United States and Canada

HortScience, 53(7), 1021–1028.

By: R. Gallardo, Q. Zhang, M. Dossett, J. Polashock, C. Rodriguez-Saona, N. Vorsa, P. Edger, H. Ashrafi ...

author keywords: berry breeding; industry priorities survey; cultivars
Source: ORCID
Added: December 6, 2018

2018 speech

Developing the Genomic Resources for a Tetraploid Blueberry cv "O'Neal"

Aryal, R., Yow, A., & Ashrafi, H. (2018, August). Poster presented at the National Association of Plant Breeders 2018 Annual Meeting, Guelph Canada.

By: R. Aryal, A. Yow & H. Ashrafi

Event: National Association of Plant Breeders 2018 Annual Meeting at Guelph Canada

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression during Blueberry Fruits Ripening

Aryal, R., & Ashrafi, H. (2018, July). Poster presented at the Plant Biology 2018, Montreal, Quebec, Canada.

By: R. Aryal & H. Ashrafi

Event: Plant Biology 2018 at Montreal, Quebec, Canada

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression during Flower and Fruit Development of the Blueberry Cv. "O'Neal"

Aryal, R., Bostan, H., Yow, A. G., Tseng, E., Iorizzo, M., & Ashrafi, H. (Januaary 13-17, 2018Januaary 13-17, 2018). Poster presented at the Plant and Animal Genome XXVI Conference, San Diego CA.

By: R. Aryal, H. Bostan, A. Yow, E. Tseng, M. Iorizzo & H. Ashrafi

Event: Plant and Animal Genome XXVI Conference at San Diego CA

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression of Southern Highbush Blueberry cv. ‘O’Neal’ Floral Buds in Response to Freeze Treatment and Recovery Periods

Redpath, L. E., Yow, A. G., Aryal, R., Hulse-Kemp, A. M., Franks, R. G., Whetten, R., & Ashrafi, H. (2018, July). Poster presented at the American Society for Horticultural Science, Washington D.C.

By: L. Redpath, A. Yow, R. Aryal, A. Hulse-Kemp, R. Franks, R. Whetten, H. Ashrafi

Event: American Society for Horticultural Science at Washington D.C

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Differential Gene Expression of ‘O’Neal’ Blueberry Floral Buds in Response to Freeze Treatment and Recovery Periods

Redpath, L. E., & Ashrafi, H. (2018, April). Presented at the Genomic Science and Biomathematics Symposium, NC State University, Raleigh NC.

By: L. Redpath & H. Ashrafi

Event: Genomic Science and Biomathematics Symposium at NC State University, Raleigh NC

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Evaluation of Mechanically Harvested Southern Highbush Blueberries (Vaccinium corymbosum) Advanced Selections for Fresh Market

Redpath, L. E., Bland, T. W., Ballington, J. R., Jiang, Y., Li, C., & Ashrafi, H. (2018, July). Presented at the American Society for Horticultural Science, Washington D.C.

By: L. Redpath, T. Bland, J. Ballington, Y. Jiang, C. Li & H. Ashrafi

Event: American Society for Horticultural Science at Washington D.C

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Fruit Quality Related Trait Evaluation in a Segregating F1 Population of Blueberry from a Cross Between "Reveille" and "Arlen" Cultivars

Young, E., Redpath, L., Iorizzo, M., & Ashrafi, H. (2018, August). Poster presented at the National Association of Plant Breeders 2018 Annual Meeting, Guelph, Canada.

By: E. Young, L. Redpath, M. Iorizzo & H. Ashrafi

Event: National Association of Plant Breeders 2018 Annual Meeting at Guelph, Canada

Source: NC State University Libraries
Added: November 1, 2018

2018 journal article

Identification and Mapping of Late Blight Resistance Quantitative Trait Loci in Tomato Accession PI 163245

The Plant Genome, 0(0), 0.

co-author countries: United States of America 🇺🇸
MeSH headings : Disease Resistance / genetics; Genome, Plant; Solanum lycopersicum / genetics; Plant Diseases / genetics; Quantitative Trait Loci
Source: ORCID
Added: December 6, 2018

2018 speech

RNA-Seq Analysis of Floral Bud Response to Freeze Treatments in Southern Highbush Blueberry CV "O’Neal"

Redpath, L. E., Yow, A. G., Aryal, R., Hulse-Kemp, A. M., Franks, R. G., Whetten, R., & Ashrafi, H. (2018, August). Poster presented at the National Plant Breeders Association, Guelph Ontario, Canada August.

By: L. Redpath, A. Yow, R. Aryal, A. Hulse-Kemp, R. Franks, R. Whetten, H. Ashrafi

Event: National Plant Breeders Association at Guelph Ontario, Canada August

Source: NC State University Libraries
Added: November 1, 2018

2018 speech

Single Nucleotide Polymorphic (SNP) Marker Discovery in a Diverse Panel of Blueberry (Vaccinium sp.) Species

Young., E., Ballington, J. R., & Ashrafi, H. (2018, July). Presented at the American Society of Horticulture Sciences, Washington, D.C.

By: E. Young., J. Ballington & H. Ashrafi

Event: American Society of Horticulture Sciences at Washington, D.C

Source: NC State University Libraries
Added: November 1, 2018

2017 speech

Differential Gene Expression Analysis of Blueberry Cultivar “Arlen” in Response to Mummy Berry (Monilinia vaccinii-corymbosi) Disease Infection

Yow, A. G., Burchhardt, K., Rollins, J. A., Cubeta, M. A., & Ashrafi, H. (2017, September). Presented at the Plant Molecular Biology Consortium Retreat, Asheville, NC.

By: A. Yow, K. Burchhardt, J. Rollins, M. Cubeta & H. Ashrafi

Event: Plant Molecular Biology Consortium Retreat at Asheville, NC

Source: NC State University Libraries
Added: November 1, 2018

2017 journal article

Disease Resistance to Multiple Fungal and Oomycete Pathogens Evaluated Using a Recombinant Inbred Line Population in Pepper

PHYTOPATHOLOGY, 107(12), 1522–1531.

By: R. Naegele*, L. Granke*, J. Fry*, T. Hill*, H. Ashrafi*, A. Van Deynze*, M. Hausbeck*

co-author countries: United States of America 🇺🇸
author keywords: Capsicum annuum; host resistance
MeSH headings : Capsicum / genetics; Capsicum / immunology; Capsicum / microbiology; Disease Resistance / genetics; Fruit / genetics; Fruit / immunology; Fruit / microbiology; Fungi / physiology; Genetic Linkage; Phytophthora / physiology; Plant Diseases / immunology; Plant Diseases / microbiology; Quantitative Trait Loci / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 speech

Identification of Candidate Genes for Mummy Berry Disease Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2017, March). Poster presented at the NCSU Graduate Student Research Symposium, Raleigh, NC.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: NCSU Graduate Student Research Symposium at Raleigh, NC

Source: NC State University Libraries
Added: November 1, 2018

2017 speech

Identification of Candidate Genes for Mummy Berry Disease Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2017, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXV), San Diego, CA.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2017 journal article

Regions Underlying Population Structure and the Genomics of Organ Size Determination in

The Plant Genome, 10(3), 0.

By: T. Hill*, J. Chunthawodtiporn*, H. Ashrafi n, K. Stoffel*, A. Weir* & A. Deynze*

co-author countries: Thailand 🇹🇭 United States of America 🇺🇸
MeSH headings : Capsicum / genetics; Chromosomes, Plant; Genome, Plant; Quantitative Trait Loci
Source: ORCID
Added: December 6, 2018

2016 journal article

A HapMap leads to a Capsicum annuum SNP infinium array: a new tool for pepper breeding

HORTICULTURE RESEARCH, 3(1).

By: A. Hulse-Kemp*, H. Ashrafi n, J. Plieske, J. Lemm, K. Stoffel*, T. Hill*, H. Luerssen, C. Pethiyagoda* ...

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution

NATURE GENETICS, 48(6), 657-+.

By: M. Iorizzo*, S. Ellison*, D. Senalik*, P. Zeng*, P. Satapoomin*, J. Huang*, M. Bowman*, M. Iovene* ...

co-author countries: Argentina 🇦🇷 China 🇨🇳 Italy 🇮🇹 Poland 🇵🇱 Türkiye 🇹🇷 United States of America 🇺🇸
MeSH headings : Biological Evolution; Carotenoids / metabolism; Daucus carota / classification; Daucus carota / genetics; Daucus carota / metabolism; Genes, Regulator; Genetic Linkage; Genetic Markers; Genome, Plant; Phylogeny; Plant Roots / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

DNA Sequence Evolution and Rare Homoeologous Conversion in Tetraploid Cotton

PLOS GENETICS, 12(5).

By: J. Page*, Z. Liechty*, R. Alexander*, K. Clemons*, A. Hulse-Kemp*, H. Ashrafi*, A. Van Deynze*, D. Stelly*, J. Udall*

co-author countries: United States of America 🇺🇸

Ed(s): K. Bomblies

MeSH headings : Alleles; Chromosome Mapping; Chromosomes, Plant / genetics; Cotton Fiber; Evolution, Molecular; Genome, Plant; Genotype; Gossypium / genetics; High-Throughput Nucleotide Sequencing; Polymorphism, Single Nucleotide; Polyploidy; Tetraploidy
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 speech

Identification of Differentially Expressed Genes for Mummy Berry (Monilinia vaccinii-corymbosi) Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2016, August). Poster presented at the Conference for the American Society for Horticultural Science (ASHS), Atlanta, GA.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: Conference for the American Society for Horticultural Science (ASHS) at Atlanta, GA

Source: NC State University Libraries
Added: November 1, 2018

2016 speech

Major CNV Detection by Read-Depth Analysis Using Capture-Based GBS in Cotton

Santiago, L. M. D., Hulse-Kemp, A. M., Resende, M., Neves, L. G., Ashrafi, H., Gill, C. A., & Stelly, D. M. (2016, January). Poster presented at the International Conference of Plant and Animal Genome Research (PAG XXIV), San Diego, CA.

By: L. Santiago, A. Hulse-Kemp, M. Resende, L. Neves, H. Ashrafi, C. Gill, D. Stelly

Event: International Conference of Plant and Animal Genome Research (PAG XXIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2016 journal article

New Insights on Eggplant/Tomato/Pepper Synteny and Identification of Eggplant and Pepper Orthologous QTL

Frontiers in Plant Science, 7.

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
author keywords: orthology; chromosome rearrangement; CDS; gene alignment; CTL; genetic map
Source: ORCID
Added: December 6, 2018

2016 speech

QTL Underlying Androgenic Haploid Production in Pepper (Capsicum annuum)

Hill, T., Afnan, K., Ray, T., Chaverri, A., Ashrafi, H., Deynze, A. V., & Bradford, K. (2016, January). Poster presented at the International Conference of Plant and Animal Genome Research (PAG XXIV), San Diego, CA.

By: T. Hill, K. Afnan, T. Ray, A. Chaverri, H. Ashrafi, A. Deynze, K. Bradford

Event: International Conference of Plant and Animal Genome Research (PAG XXIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2016 speech

Toward Deciphering of Mechanisms Underlying White Drupelet and Reversion Disorders of Blackberry

Fernandez, G., Carter, J. R., Yow, A. G., & Ashrafi, H. (2016, January). Poster presented at the International Conference of Plant and Animal Genome Research (PAG XXIV), San Diego, CA.

By: G. Fernandez, J. Carter, A. Yow & H. Ashrafi

Event: International Conference of Plant and Animal Genome Research (PAG XXIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2016 speech

Using RNA-Seq for the Identification of Candidate Genes for Mummy Berry Disease Resistance in Blueberry

Yow, A. G., Burchhardt, K., Cubeta, M. A., & Ashrafi, H. (2016, September). Presented at the Plant Molecular Biology Consortium Retreat, Wrightsville Beach, NC.

By: A. Yow, K. Burchhardt, M. Cubeta & H. Ashrafi

Event: Plant Molecular Biology Consortium Retreat at Wrightsville Beach, NC

Source: NC State University Libraries
Added: November 1, 2018

2015 journal article

A Long-Read Transcriptome Assembly of Cotton (Gossypium hirsutum L.) and Intraspecific Single Nucleotide Polymorphism Discovery

The Plant Genome, 8(2), 0.

By: H. Ashrafi*, A. Hulse-Kemp*, F. Wang*, S. Yang*, X. Guan*, D. Jones*, M. Matvienko*, K. Mockaitis* ...

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: November 1, 2018

2015 journal article

BAC-End Sequence-Based SNP Mining in Allotetraploid Cotton (Gossypium) Utilizing Resequencing Data, Phylogenetic Inferences, and Perspectives for Genetic Mapping

G3&Amp;#58; Genes|Genomes|Genetics, 5(6), 1095–1105.

By: A. Hulse-Kemp*, H. Ashrafi*, K. Stoffel*, X. Zheng*, C. Saski*, B. Scheffler*, D. Fang*, Z. Chen* ...

co-author countries: United States of America 🇺🇸
author keywords: SNP genotyping; cotton genomics; resequencing; BAC-derived SNPs; intraspecific
MeSH headings : Base Sequence; Chromosome Mapping / methods; Chromosomes, Artificial, Bacterial / genetics; Cluster Analysis; Computer Simulation; Contig Mapping; Data Mining; Diploidy; Genetic Linkage; Genetic Loci; Genetic Markers; Genome, Bacterial; Gossypium / genetics; Heterozygote; Homozygote; Molecular Sequence Annotation; Phylogeny; Polymorphism, Single Nucleotide / genetics; Polyploidy; Principal Component Analysis; Sequence Analysis, DNA / methods; Species Specificity
Source: ORCID
Added: December 6, 2018

2015 journal article

Characterization of early blight resistance in a recombinant inbred line population of tomato: I. Heritability and trait correlations

Advanced Studies in Biology, 7, 131–148.

By: M. Foolad & H. Ashrafi

Sources: NC State University Libraries, ORCID
Added: November 6, 2018

2015 journal article

Characterization of early blight resistance in a recombinant inbred line population of tomato: II. Identification of QTLs and their co-localization with candidate resistance genes

Advanced Studies in Biology, 7, 149–168.

By: H. Ashrafi & M. Foolad

Source: ORCID
Added: December 6, 2018

2015 journal article

Detached-Leaflet Evaluation of Tomato Germplasm for Late Blight Resistance and Its Correspondence to Field and Greenhouse Screenings

Plant Disease, 99(5), 718–722.

By: M. Foolad*, M. Sullenberger* & H. Ashrafi*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: December 6, 2018

2015 journal article

Development of a 63K SNP array for Gossypium and high-density mapping of intra- and inter-specific populations of cotton (G. hirsutum L)

G3 Gene| Genomes| Genetics, 5, 1187–1209.

By: A. Hulse-Kemp, J. Lemm, J. Plieske, H. Ashrafi & R. Buyyarapu

Source: NC State University Libraries
Added: November 1, 2018

2015 speech

Full-Length Transcriptome Sequencing Using PacBio Sequencing in Blueberry

Yow, A. G., Guo, W., & Ashrafi, H. (2015, November). Poster presented at the NCSU CALS Stewards of the Future Conference, Raleigh, NC.

By: A. Yow, W. Guo & H. Ashrafi

Event: NCSU CALS Stewards of the Future Conference at Raleigh, NC

Source: NC State University Libraries
Added: November 1, 2018

2015 journal article

Ultra-High Density, Transcript-Based Genetic Maps of Pepper Define Recombination in the Genome and Synteny Among Related Species

G3-GENES GENOMES GENETICS, 5(11), 2341–2355.

By: T. Hill*, H. Ashrafi n, S. Chin-Wo*, K. Stoffel*, M. Truco*, A. Kozik*, R. Michelmore*, A. Van Deynze*

co-author countries: United States of America 🇺🇸
author keywords: GeneChip; Pseudolinkage; Solanum tuberosum; Solanum lycopersicum Solanaceae genomics
MeSH headings : Capsicum / classification; Capsicum / genetics; Chromosome Breakpoints; Genetic Linkage; Genetic Speciation; Genome, Plant; Polymorphism, Single Nucleotide; Recombination, Genetic; Solanum / classification; Solanum / genetics; Synteny; Transcriptome
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 speech

Using spinach to compare technologies for whole genome assemblies

Presented at the Plant and Animal Genome XXIII Conference.

By: H. Ashrafi

Event: Plant and Animal Genome XXIII Conference

Source: NC State University Libraries
Added: November 6, 2018

2014 journal article

Cosegregates with QTL for Resistance to in Pepper ()

The Plant Genome, 7(2), 0.

By: W. Rehrig*, H. Ashrafi*, T. Hill*, J. Prince* & A. Deynze*

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: December 6, 2018

2014 speech

Deciphering Resistance to Phytophthora capsici in Pepper

Deynze, A. V., Hill, T., Ashrafi, H., Kozik, A., Chin-Wo, S. R., & Rehrig, W. Z. (2014, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: A. Deynze, T. Hill, H. Ashrafi, A. Kozik, S. Chin-Wo & W. Rehrig

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2014 journal article

Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts

BMC Genomics, 15(1), 945.

By: A. Hulse-Kemp*, H. Ashrafi*, X. Zheng*, F. Wang*, K. Hoegenauer*, A. Maeda*, S. Yang*, K. Stoffel* ...

co-author countries: United States of America 🇺🇸
author keywords: Cotton; Gossypium barbadense; Gossypium tomentosum; Gossypium mustelinum; Gossypium armourianum; Gossypium longicalyx; RNA-seq; Interspecific SNP
MeSH headings : Breeding; Chromosome Mapping; Chromosomes, Plant; Computational Biology; Crosses, Genetic; Genes, Plant; Genetic Markers; Genome, Plant; Genotyping Techniques; Gossypium / genetics; Polymorphism, Single Nucleotide; Reproducibility of Results; Sequence Deletion; Transcriptome
Source: ORCID
Added: December 6, 2018

2014 journal article

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

Nature Genetics, 46(3), 270–278.

By: S. Kim*, M. Park*, S. Yeom*, Y. Kim*, J. Lee*, H. Lee*, E. Seo*, J. Choi* ...

co-author countries: Israel 🇮🇱 Korea (Republic of) 🇰🇷 United States of America 🇺🇸
MeSH headings : Capsaicin / metabolism; Capsicum / genetics; Capsicum / growth & development; Capsicum / metabolism; Evolution, Molecular; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genetic Variation; Genome Size; Genome, Plant; Solanum lycopersicum / genetics; Metabolic Networks and Pathways / genetics; Molecular Sequence Data; Multigene Family; RNA, Plant / genetics; Species Specificity
Sources: Web Of Science, ORCID
Added: November 6, 2018

2014 speech

Increasing Gossypium hirsutum Intraspecific SNPs via Genomic Sequencing

Deynze, A. V., Stelly, D., Ashrafi, H., Hulse, A. M., & Jones, D. C. (2014, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: A. Deynze, D. Stelly, H. Ashrafi, A. Hulse & D. Jones

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2014 journal article

QTL Mapping of Fruit Rot Resistance to the Plant Pathogen Phytophthora capsici in a Recombinant Inbred Line Capsicum annuum Population

Phytopathology, 104(5), 479–483.

By: R. Naegele*, H. Ashrafi*, T. Hill*, S. Chin-Wo*, A. Deynze* & M. Hausbeck

co-author countries: United States of America 🇺🇸
MeSH headings : Capsicum / genetics; Capsicum / parasitology; Chromosome Mapping; Crosses, Genetic; Disease Resistance; Fruit / genetics; Fruit / parasitology; Genetic Linkage; Genetic Markers; Host-Pathogen Interactions; Inbreeding; Phenotype; Phytophthora / physiology; Plant Diseases / parasitology; Quantitative Trait Loci / genetics; Species Specificity
Source: ORCID
Added: December 6, 2018

2014 speech

SNP marker discovery for tomato breeding using Genotyping-by-Sequencing (GBS)

Ashrafi, H., Ohlson, E. W., Sullenberger, M. T., Stoffel, K., Masoudi, M., Deynze, A. V., & Foolad, M. (2014, September). Presented at the Tomato Breeders Round Table, NC State University, Fletcher, NC.

By: H. Ashrafi, E. Ohlson, M. Sullenberger, K. Stoffel, M. Masoudi, A. Deynze, M. Foolad

Event: Tomato Breeders Round Table, NC State University at Fletcher, NC

Source: NC State University Libraries
Added: November 1, 2018

2013 journal article

An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce

G3&Amp;#58; Genes|Genomes|Genetics, 3(4), 617–631.

By: M. Truco*, H. Ashrafi*, A. Kozik*, H. Leeuwen*, J. Bowers*, S. Wo*, K. Stoffel*, H. Xu* ...

co-author countries: United States of America 🇺🇸
author keywords: Lactuca sativa; microarray; linkage analysis; recombination
MeSH headings : Chromosome Mapping; Genetic Linkage; Genetic Markers; Genome, Plant; Lettuce / genetics; Oligonucleotide Array Sequence Analysis; Phenotype
Source: ORCID
Added: December 6, 2018

2013 journal article

Characterization of Capsicum annuum Genetic Diversity and Population Structure Based on Parallel Polymorphism Discovery with a 30K Unigene Pepper GeneChip

PLoS ONE, 8(2), e56200.

By: T. Hill*, H. Ashrafi*, S. Reyes-Chin-Wo*, J. Yao*, K. Stoffel*, M. Truco*, A. Kozik*, R. Michelmore*, A. Deynze*

co-author countries: United States of America 🇺🇸

Ed(s): J. Zhang

MeSH headings : Capsicum / genetics; DNA Copy Number Variations / genetics; Gene Frequency; Genes, Plant / genetics; Genetic Loci / genetics; Hybridization, Genetic / genetics; Oligonucleotide Array Sequence Analysis / methods; Polymorphism, Single Nucleotide
Source: ORCID
Added: December 6, 2018

2013 speech

Genome-wide SNP Development and Validation for Intraspecific SNPs in Upland Cotton

Hulse, A. M., Hoegenauer, K. A., Ashrafi, H., Wang, F., Stelly, D., Deynze, A. V., … Jones, D. C. (2013, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: A. Hulse, K. Hoegenauer, H. Ashrafi, F. Wang, D. Stelly, A. Deynze, L. Hinze, J. Yu ...

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2013 journal article

Identification of QTLs for capsaicinoids, fruit quality, and plant architecture-related traits in an interspecific Capsicum RIL population

Genome, 56(1), 61–74.

By: S. Yarnes*, H. Ashrafi*, S. Reyes-Chin-Wo*, T. Hill*, K. Stoffel* & A. Deynze*

co-author countries: United States of America 🇺🇸

Ed(s): P. Gulick

author keywords: Capsicum frutescens; Capsicum annuum; pepper; phenology; capsaicinoids; fruit quality
MeSH headings : Capsaicin / analysis; Capsicum / chemistry; Capsicum / genetics; Crosses, Genetic; Expressed Sequence Tags; Fruit / genetics; Genes, Plant; Inbreeding; Phenotype; Physical Chromosome Mapping; Quantitative Trait Loci
Source: ORCID
Added: December 6, 2018

2013 journal article

Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing

G3&Amp;#58; Genes|Genomes|Genetics, 3(10), 1809–1818.

By: J. Page*, M. Huynh*, Z. Liechty*, K. Grupp*, D. Stelly, A. Hulse, H. Ashrafi*, A. Deynze*, J. Wendel*, J. Udall*

co-author countries: United States of America 🇺🇸
author keywords: cotton fiber; comparative genomics; molecular evolution; allopolyploid
MeSH headings : Diploidy; Evolution, Molecular; Genome, Plant; Gossypium / genetics; Polymorphism, Single Nucleotide; Polyploidy; Sequence Analysis, DNA; Sequence Deletion
Source: ORCID
Added: December 6, 2018

2013 speech

Resolving Tight Linkages Around Renlon by MAS for High-resolution Recombination in Chromosome-11

Zheng, X., Wang, F., Hoegenauer, K. A., Quintana, J., Ashrafi, H., Stelly, D., … Nichols, R. L. (2013, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XXI), San Diego, CA.

By: X. Zheng, F. Wang, K. Hoegenauer, J. Quintana, H. Ashrafi, D. Stelly, A. Bell, A. Deynze, D. Jones, R. Nichols

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XXI) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2013 article

Structural Genomics

Deynze, A. V., Hill, T., & Ashrafi, H. (2013, January). Genetics, Genomics, and Breeding of Tomato, pp. 327–344.

By: A. Deynze, T. Hill & H. Ashrafi

Source: ORCID
Added: December 6, 2018

2012 speech

Collaborative Development of SNPs for Cotton Research, Introgression, MAS and Breeding. Genome-Wide Gossypium SNP Development and Validation

Wang, F., Hulse, A. M., Hoegenauer, K., Stelly, D. M., Ashrafi, H., Deynze, A. V., & Yu, J. Z. (2012, January). Presented at the Cotton Improvement Conference, Beltwide Cotton Conferences. http://www.cotton.org/beltwide/index.cfm?page=beltwide_overview

By: F. Wang, A. Hulse, K. Hoegenauer, D. Stelly, H. Ashrafi, A. Deynze, J. Yu

Event: Cotton Improvement Conference, Beltwide Cotton Conferences

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Comparison and evaluation of cotton SNPs developed by transcriptome, genome reduction on restriction site conservation and RAD-based sequencing

Ashrafi, H. (2012, October). Presented at the International Cotton Genome Initiative (ICGI) Research Conference, Raleigh, North Carolina, USA.

By: H. Ashrafi

Event: International Cotton Genome Initiative (ICGI) Research Conference at Raleigh, North Carolina, USA

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Comparisons of high-density EST-based maps in pepper species

Hill, T., Ashrafi, H., Reyes-Chin-Wo, S., Romero, M. S., Kozik, A., & Deynze, A. V. (2012, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XX), San Diego, CA.

By: T. Hill, H. Ashrafi, S. Reyes-Chin-Wo, M. Romero, A. Kozik & A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2012 journal article

De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes

BMC Genomics, 13(1), 571.

By: H. Ashrafi*, T. Hill*, K. Stoffel*, A. Kozik*, J. Yao*, S. Chin-Wo*, A. Deynze*

co-author countries: United States of America 🇺🇸
author keywords: Pepper; Capsicum spp; Molecular Markers; EST; Transcriptome; RNAseq; Annotation; SNP; SSR; SPP
MeSH headings : Capsicum / genetics; Capsicum / metabolism; DNA Shuffling / methods; Databases, Genetic; Expressed Sequence Tags; Genetic Association Studies / methods; Genotype; Microsatellite Repeats / genetics; Molecular Sequence Annotation; Polymorphism, Single Nucleotide / genetics; Proteomics / methods; Transcriptome / genetics
Source: ORCID
Added: December 6, 2018

2012 journal article

Development and application of a 6.5 million feature Affymetrix Genechip® for massively parallel discovery of single position polymorphisms in lettuce (Lactuca spp.)

BMC Genomics, 13(1), 185.

By: K. Stoffel*, H. Leeuwen*, A. Kozik*, D. Caldwell*, H. Ashrafi*, X. Cui*, X. Tan*, T. Hill* ...

co-author countries: United States of America 🇺🇸
MeSH headings : Algorithms; Chromosome Mapping / methods; DNA, Plant / genetics; Expressed Sequence Tags; Genes, Plant; Genome, Plant; Lettuce / genetics; Oligonucleotide Array Sequence Analysis / methods; Phylogeny; Polymorphism, Single Nucleotide
Source: ORCID
Added: December 6, 2018

2012 speech

Genome-Wide Gossypium SNP Development and Validation

Wang, F., Hulse, A. M., Hoegenauer, K., Stelly, D. M., Ashrafi, H., Deynze, A. V., & Yu, J. (2012, January). Presented at the Cotton Improvement Conference, Beltwide Cotton Conferences. http://www.cotton.org/beltwide/index.cfm?page=beltwide_overview

By: F. Wang, A. Hulse, K. Hoegenauer, D. Stelly, H. Ashrafi, A. Deynze, J. Yu

Event: Cotton Improvement Conference, Beltwide Cotton Conferences

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Genome-wide SNP development and validation for allotetraploid Gossypium

Hulse, A. M., Wang, F., Hoegenauer, K., Stelly, D. M., Ashrafi, H., Deynze, A. V., … Jones, D. C. (2012, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XX), San Diego, CA.

By: A. Hulse, F. Wang, K. Hoegenauer, D. Stelly, H. Ashrafi, A. Deynze, J. Yu, J. Chen, J. Udall, D. Jones

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2012 speech

Genome-wide SNP discovery from de novo assemblies of pepper (Capsicum annuum) transcriptomes

Ashrafi, H., Yao, J., Stoffel, K., Reyes-Chin-Wo, S., Hill, T., Kozik, A., & Van Deynze, A. (2012, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XX), San Diego, CA.

By: H. Ashrafi, J. Yao, K. Stoffel, S. Reyes-Chin-Wo, T. Hill, A. Kozik, A. Van Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2012 journal article

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

Nature, 492(7429), 423–427.

By: A. Paterson*, J. Wendel*, H. Gundlach*, H. Guo*, J. Jenkins*, D. Jin*, D. Llewellyn*, K. Showmaker* ...

co-author countries: Australia 🇦🇺 Brazil 🇧🇷 China 🇨🇳 Germany 🇩🇪 Egypt 🇪🇬 Israel 🇮🇱 India 🇮🇳 Pakistan 🇵🇰 United States of America 🇺🇸
MeSH headings : Alleles; Biological Evolution; Cacao / genetics; Chromosomes, Plant / genetics; Cotton Fiber; Diploidy; Gene Duplication / genetics; Genes, Plant / genetics; Genome, Plant / genetics; Gossypium / classification; Gossypium / genetics; Molecular Sequence Annotation; Phylogeny; Polyploidy; Vitis / genetics
Sources: ORCID, Web Of Science, Crossref
Added: August 6, 2018

2012 journal article

Selective genotyping to identify late blight resistance genes in an accession of the tomato wild species Solanum pimpinellifolium

Euphytica, 187(1), 63–75.

By: H. Merk*, H. Ashrafi* & M. Foolad*

co-author countries: United States of America 🇺🇸
author keywords: Disease resistance; Phytophthora infestans; Qualitative resistance; Solanum pimpinellifolium; Trait-based analysis; Tomato; Resistance breeding; Vertical resistance
Source: ORCID
Added: December 6, 2018

2012 journal article

Uniform ripening Encodes a Golden 2-like Transcription Factor Regulating Tomato Fruit Chloroplast Development

Science, 336(6089), 1711–1715.

By: A. Powell*, C. Nguyen*, T. Hill*, K. Cheng*, R. Figueroa-Balderas*, H. Aktas*, H. Ashrafi*, C. Pons* ...

co-author countries: Argentina 🇦🇷 Spain 🇪🇸 United States of America 🇺🇸
MeSH headings : Chloroplasts / genetics; Chloroplasts / physiology; Chromosome Mapping; Chromosomes, Plant; Fruit / genetics; Fruit / growth & development; Solanum lycopersicum / genetics; Solanum lycopersicum / growth & development; Phenotype; Plant Proteins / genetics; Plant Proteins / physiology; Transcription Factors / genetics; Transcription Factors / physiology
Source: ORCID
Added: December 6, 2018

2011 speech

An Integrated approach to breeding resistance to Phytophthora capsici In Pepper

Deynze, A. V., Hill, T. A., Yarnes, S., Rehrig, W. Z., Chin-Wo, S. R., Ashrafi, H., … Prince, J. (2011, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XIX), San Diego, CA.

By: A. Deynze, T. Hill, S. Yarnes, W. Rehrig, S. Chin-Wo, H. Ashrafi, R. Adamchak, A. Kozik, J. Prince

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XIX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2011 speech

Comparisons of high-density EST-based maps in pepper species

Hill, T., Ashrafi, H., Chin-Wo, S. R.-, Romero, M. S., Deynze, A. V., & Kozik, A. (Aug. 6-10, 2011Aug. 6-10, 2011). Presented at the Plant Biology, American Society of Plant Biologists, Minneapolis, MN.

By: T. Hill, H. Ashrafi, S. Chin-Wo, M. Romero, A. Deynze & A. Kozik

Event: Plant Biology, American Society of Plant Biologists at Minneapolis, MN

Source: NC State University Libraries
Added: November 1, 2018

2011 journal article

De novo assembly and characterization of the carrot transcriptome reveals novel genes, new markers, and genetic diversity

BMC Genomics, 12(1).

co-author countries: Argentina 🇦🇷 Poland 🇵🇱 United States of America 🇺🇸
MeSH headings : Contig Mapping; DNA, Plant / genetics; Daucus carota / genetics; Expressed Sequence Tags; Gene Expression Profiling / methods; Genes, Plant; Genetic Markers; Genetic Variation; Genotype; Introns; Molecular Sequence Annotation; Polymorphism, Single Nucleotide; Sequence Analysis, DNA / methods; Transcriptome
Source: ORCID
Added: December 6, 2018

2011 speech

Development and Application of Genomic Tools in Pepper

Deynze, A. V., Hill, T., Prince, J., Yarnes, S., Chunthawodtiporn, J., Rehrig, W., … Kozik, A. (2011, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XIX), San Diego, CA.

By: A. Deynze, T. Hill, J. Prince, S. Yarnes, J. Chunthawodtiporn, W. Rehrig, S. Reyes-Chin-wo, H. Ashrafi, A. Kozik

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XIX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2011 journal article

Identification of novel quantitative trait loci for increased lycopene content and other fruit quality traits in a tomato recombinant inbred line population

Molecular Breeding, 30(1), 549–567.

By: H. Ashrafi*, M. Kinkade*, H. Merk* & M. Foolad*

co-author countries: United States of America 🇺🇸
author keywords: Carotenoids; Molecular markers; QTL mapping; Recombinant inbred lines; Solanum lycopersicum; Solanum pimpinellifolium
Source: ORCID
Added: December 6, 2018

2011 speech

The Genetic Map and Genome Sequencing of Lettuce

Deynze, A. V., Hill, T., Prince, J., Yarnes, S., Chunthawodtiporn, J., Rehrig, W., … Kozik, A. (2011, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XIX), San Diego, CA.

By: A. Deynze, T. Hill, J. Prince, S. Yarnes, J. Chunthawodtiporn, W. Rehrig, S. Reyes-Chin-wo, H. Ashrafi, A. Kozik

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XIX) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2010 speech

Ultra High Density EST-Based Maps Reveal Genome Differences Between C. frutescence And C. annuum

Hill, T., Ashrafi, H., Kozik, A., & Deynze, A. V. (2010, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVIII), San Diego, CA.

By: T. Hill, H. Ashrafi, A. Kozik & A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVIII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 journal article

A new genetic linkage map of tomato based on a Solanum lycopersicum × S. pimpinellifolium RIL population displaying locations of candidate pathogen response genes

Genome, 52(11), 935–956.

By: H. Ashrafi*, M. Kinkade* & M. Foolad*

co-author countries: United States of America 🇺🇸

Ed(s): P. Gulick

author keywords: candidate resistance gene; cleaved amplified polymorphic sequence (CAPS); conserved ortholog set (COS); expressed sequence tag (EST); genetic map; genetic marker; restriction fragment length polymorphism (RFLP); simple sequence repeat (SSR)
MeSH headings : Breeding; Chromosome Mapping; Chromosomes, Plant / genetics; Crosses, Genetic; DNA, Plant / genetics; Expressed Sequence Tags; Genes, Plant; Genetic Linkage; Genetic Variation; Minisatellite Repeats / genetics; Plant Diseases / genetics; Polymorphism, Restriction Fragment Length; Quantitative Trait Loci / genetics; Solanum / genetics
Source: ORCID
Added: December 6, 2018

2009 speech

Construction of an Ultra High Density Genetic Map of Lettuce using an Affymetrix GeneChip

Kozik, A., Leeuwen, H., Truco, M. J., Stoffel, K., McHale, L., Ashrafi, H., … Michelmore, R. W. (2009, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: A. Kozik, H. Leeuwen, M. Truco, K. Stoffel, L. McHale, H. Ashrafi, D. Lavelle, X. Cui, A. Deynze, R. Michelmore

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

Development and Utilization of a High Density 6.6 Million Feature Affymetrix GeneChip for Marker Discovery and Genotyping in Lettuce

Leeuwen, H., Stoffel, K., Truco, M. J., Ashrafi, H., Cui, X., Kozik, A., … Deynze, A. V. (2009, January). Poster presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: H. Leeuwen, K. Stoffel, M. Truco, H. Ashrafi, X. Cui, A. Kozik, R. Michelmore, A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

High-Density Mapping of the Lettuce Genome with SFP Markers in over 15,000 Unigenes

Leeuwen, H., Stoffel, K., Kozik, A., Cui, X., Ashrafi, H., McHale, L., … Michelmore, R. W. (2009, January). Presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: H. Leeuwen, K. Stoffel, A. Kozik, X. Cui, H. Ashrafi, L. McHale, D. Lavelle, G. Wong ...

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

The Application of a Whole Genome Pepper Array to Identify SFPs in a Diversity Panel

Ashrafi, H., Hill, T., Yao, J., Leeuwen, H., Michelmore, R., Kozik, A., & Deynze, A. V. (2009, January). Invited presentation in Solanaceae workshop presented at the International Conference on the Status of Plant and Animal Genome Research (PAG XVII), San Diego, CA.

By: H. Ashrafi, T. Hill, J. Yao, H. Leeuwen, R. Michelmore, A. Kozik, A. Deynze

Event: International Conference on the Status of Plant and Animal Genome Research (PAG XVII) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2009 speech

The Application of a Whole Genome Pepper Array to Solanaceae Crops

Hill, T., Ashrafi, H., Yao, J., Jong, W. D., Francis, D., Kozik, A., & Deynze, A. V. (2009, October). Presented at the Cologne, Germany.

By: T. Hill, H. Ashrafi, J. Yao, W. Jong, D. Francis, A. Kozik, A. Deynze

Event: at Cologne, Germany

Source: NC State University Libraries
Added: November 1, 2018

2008 journal article

A Solanum lycopersicum × Solanum pimpinellifolium Linkage Map of Tomato Displaying Genomic Locations of R-Genes, RGAs, and Candidate Resistance/Defense-Response ESTs

International Journal of Plant Genomics, 2008, 1–18.

By: A. Sharma*, L. Zhang*, D. Niño-Liu*, H. Ashrafi* & M. Foolad*

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
Source: ORCID
Added: December 6, 2018

2008 journal article

Genetics, Genomics and Breeding of Late Blight and Early Blight Resistance in Tomato

Critical Reviews in Plant Sciences, 27(2), 75–107.

By: M. Foolad*, H. Merk* & H. Ashrafi*

co-author countries: United States of America 🇺🇸
author keywords: disease resistance; horizontal resistance; pathogenicity; R-gene; QTL; Solanum lycopersicum; S. pimpinellifolium; vertical resistance
Source: ORCID
Added: December 6, 2018

2007 speech

HPLC and spectrophotometer analyses of fruit carotenoids In a Lycopersicon esculentum X L. pimpinellifolium RIL population reveals several new QTLs for lycopene content

Ashrafi, H., Kinkade, M. R., & Foolad, M. R. (2007, January). Presented at the The International Conference on the Status of Plant and Animal Genome Research, PAG XV, San Diego, CA.

By: H. Ashrafi, M. Kinkade & M. Foolad

Event: The International Conference on the Status of Plant and Animal Genome Research, PAG XV at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2007 speech

Identification and molecular mapping of a new dominant gene (Ph5) conferring broad-spectrum resistance against tomato late blight

Merk, H. L., Ashrafi, H., Kinkade, M. P., & Foolad, M. R. (2007, January). Presented at the The International Conference on the Status of Plant and Animal Genome Research, PAG XV, San Diego, CA.

By: H. Merk, H. Ashrafi, M. Kinkade & M. Foolad

Event: The International Conference on the Status of Plant and Animal Genome Research, PAG XV at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

A molecular linkage map of tomato based on RFLP markers and candidate disease-resistance/defense-response genes in an F7 RIL population

Ashrafi, H., Lin, G. Y., & Foolad, M. R. (2006, March). Poster presented at the Graduate Research Exposition, College of Ag. Sciences, The Pennsylvania State University, University Park, PA.

By: H. Ashrafi, G. Lin & M. Foolad

Event: Graduate Research Exposition, College of Ag. Sciences, The Pennsylvania State University at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

Identification of QTLs for tomato early blight resistance in a RIL population of a cross between Lycopersicon esculentum and L. pimpinellifolium

Ashrafi, H., Lin, G. Y., & Foolad, M. R. (2006, April). Poster presented at the Pennsylvania State University Genetics Symposium, University Park, PA.

By: H. Ashrafi, G. Lin & M. Foolad

Event: Pennsylvania State University Genetics Symposium at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2006 conference paper

Identification of new sources of late blight resistance in tomato and mapping of a new resistance gene

Foolad, M. R., Merk, H. L., Ashrafi, H., & Kinkade, M. P. (Nov. 9-10, 2006). Proc. 21st Annual Tomato Disease Workshop. Fletcher, NC: NC State University.

By: M. Foolad, H. Merk, H. Ashrafi & M. Kinkade

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

Mapping of early blight resistance QTLs and candidate resistance genes in a RIL population of tomato

Ashrafi, H., Sharma, A., Kole, C., Merk, H., Lin, G. Y., & Foolad, M. R. (2006, January). Poster presented at the The XIV International Conference on the Status of Plant and Animal Genome Research (PAG XIV), San Diego, CA.

By: H. Ashrafi, A. Sharma, C. Kole, H. Merk, G. Lin & M. Foolad

Event: The XIV International Conference on the Status of Plant and Animal Genome Research (PAG XIV) at San Diego, CA

Source: NC State University Libraries
Added: November 1, 2018

2006 speech

Toward identification and mapping of new late blight resistance genes in tomato

Merk, H. L., Ashrafi, H., Kole, C., Kinkade, M., Lin, G. Y., & Foolad, M. R. (2006, April). Poster presented at the 2006 Pennsylvania State University Genetics Symposium, University Park, PA.

By: H. Merk, H. Ashrafi, C. Kole, M. Kinkade, G. Lin & M. Foolad

Event: 2006 Pennsylvania State University Genetics Symposium at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2005 journal article

(13) Comparative Mapping of Early Blight Resistance QTLs and Candidate Resistance Genes in F2, F3, F4 and a RIL Population of Tomato

HortScience, 40(4), 1040.

By: H. Ashrafi, A. Sharma, D. Niño-Liu, L. Zhang & M. Foolad

Source: NC State University Libraries
Added: November 1, 2018

2005 speech

Comparative mapping of early blight resistance QTLs and candidate resistance genes in F2, F3, F4 and a RIL population of Tomato

Poster presented at the 2005 ASHS Annual International Conference, Las Vegas.

By: H. Ashrafi, A. Sharma, D. Niño-Liu, L. Zhang & M. Foolad

Event: 2005 ASHS Annual International Conference at Las Vegas

Source: NC State University Libraries
Added: November 1, 2018

2005 speech

Genetic mapping of candidate resistance genes in tomato using an F2 and a RIL population of a Lycopersicon esculentum × L. pimpinellifolium cross

Ashrafi, H., Sharma, A., Niño-Liu, D., & Foolad, M. R. (2005, March). Presented at the Graduate Research Exposition, College of Agricultural Sciences, The Pennsylvania State University, University Park, PA.

By: H. Ashrafi, A. Sharma, D. Niño-Liu & M. Foolad

Event: Graduate Research Exposition, College of Agricultural Sciences, The Pennsylvania State University at University Park, PA

Source: NC State University Libraries
Added: November 1, 2018

2005 journal article

Genetics and Breeding of Early Blight Resistance in Tomato

HortScience, 40, 1114–1114.

By: M. Foolad, A. Sharma, H. Ashrafi & G. Lin

Source: NC State University Libraries
Added: November 1, 2018

2005 speech

Genetics of early blight resistance in tomato

Sharma, A., Ashrafi, H., & Foolad, M. R. (2005, January). Poster presented at the The International Conference on the Status of Plant and Animal Genome Research, PAG XIII, San Diego.

By: A. Sharma, H. Ashrafi & M. Foolad

Event: The International Conference on the Status of Plant and Animal Genome Research, PAG XIII at San Diego

Source: NC State University Libraries
Added: November 1, 2018

2004 speech

Early blight resistance in tomato: genetics, breeding and accelerated breeding

R., F. M., Sharma, A., & Ashrafi, H. (2004, June). Poster presented at the First International Symposium in Tomato Diseases (ISTD) and 19th Annual Tomato Disease Workshop (ATDW), Orlando, FL.

By: F. R., A. Sharma & H. Ashrafi

Event: First International Symposium in Tomato Diseases (ISTD) and 19th Annual Tomato Disease Workshop (ATDW) at Orlando, FL

Source: NC State University Libraries
Added: November 1, 2018

2003 journal article

MOLECULAR CHARACTERIZATION OF OLIVE GERMPLASM IN IRAN BY USE OF RANDOM AMPLIFIED POLYMORPHIC DNA (RAPD) AND CORRELATION WITH PHENOTYPIC STUDIES: PRELIMINARY RESULTS

Acta Horticulturae, 7(623), 169–175.

By: S. Samaee, Z. Shobbar, H. Ashrafi*, M. Hosseini-Mazinani & M. Sheidai

author keywords: Olea europea L. Cultivars; Multivariate Analysis
Source: ORCID
Added: December 6, 2018

Employment

Updated: January 25th, 2023 08:51

2015 - present

NC State University Raleigh, NC, US
Associate Professor Horticultural Science

2008 - 2015

University of California Davis Davis, CA, US
Bioinformatics Scientist Plant Sciences

Education

Updated: October 18th, 2018 22:59

2007 - 2008

Pennsylvania State University Penn State World Campus University Park, PA, US
PhD Genetics Plant Sciences

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