@article{caton_fang_pallipparambil_manoukis_2023, title={Transect-based trapping for area-wide delimitation of insects}, volume={4}, ISSN={["1938-291X"]}, DOI={10.1093/jee/toad059}, abstractNote={Abstract}, journal={JOURNAL OF ECONOMIC ENTOMOLOGY}, author={Caton, Barney P. and Fang, Hui and Pallipparambil, Godshen R. and Manoukis, Nicholas C.}, year={2023}, month={Apr} }
 @article{gowda_shrestha_harris_phillips_fang_sood_zhang_bourland_bart_kuraparthy_2022, title={Identification and genomic characterization of major effect bacterial blight resistance locus (BB-13) in Upland cotton (Gossypium hirsutum L.)}, volume={10}, ISSN={["1432-2242"]}, url={https://publons.com/wos-op/publon/54751063/}, DOI={10.1007/s00122-022-04229-2}, abstractNote={Identification and genomic characterization of major resistance locus against cotton bacterial blight (CBB) using GWAS and linkage mapping to enable genomics-based development of durable CBB resistance and gene discovery in cotton. Cotton bacterial leaf blight (CBB), caused by Xanthomonas citri subsp. malvacearum (Xcm), has periodically been a damaging disease in the USA. Identification and deployment of genetic resistance in cotton cultivars is the most economical and efficient means of reducing crop losses due to CBB. In the current study, genome-wide association study (GWAS) of CBB resistance using an elite diversity panel of 380 accessions, genotyped with the cotton single nucleotide polymorphism (SNP) 63 K array, and phenotyped with race-18 of CBB, localized the CBB resistance to a 2.01-Mb region in the long arm of chromosome D02. Molecular genetic mapping using an F6 recombinant inbred line (RIL) population showed the CBB resistance in cultivar Arkot 8102 was controlled by a single locus (BB-13). The BB-13 locus was mapped within the 0.95-cM interval near the telomeric region in the long arm of chromosome D02. Flanking SNP markers, i04890Gh and i04907Gh of the BB-13 locus, identified from the combined linkage analysis and GWAS, targeted it to a 371-Kb genomic region. Candidate gene analysis identified thirty putative gene sequences in the targeted genomic region. Nine of these putative genes and two NBS-LRR genes adjacent to the targeted region were putatively involved in plant disease resistance and are possible candidate genes for BB-13 locus. Genetic mapping and genomic targeting of the BB13 locus in the current study will help in cloning the CBB-resistant gene and establishing the molecular genetic architecture of the BB-13 locus towards developing durable resistance to CBB in cotton.}, journal={THEORETICAL AND APPLIED GENETICS}, publisher={Springer Science and Business Media LLC}, author={Gowda, S. Anjan and Shrestha, Navin and Harris, Taylor M. and Phillips, Anne Z. and Fang, Hui and Sood, Shilpa and Zhang, Kuang and Bourland, Fred and Bart, Rebecca and Kuraparthy, Vasu}, year={2022}, month={Oct} }
 @article{fang_caton_manoukis_pallipparambil_2022, title={Simulation-based evaluation of two insect trapping grids for delimitation surveys}, volume={12}, url={http://dx.doi.org/10.1038/s41598-022-14958-5}, DOI={10.1038/s41598-022-14958-5}, abstractNote={Abstract}, number={1}, journal={Scientific Reports}, publisher={Springer Science and Business Media LLC}, author={Fang, Hui and Caton, Barney and Manoukis, Nicholas C. and Pallipparambil, Godshen}, year={2022}, month={Dec} }
 @article{caton_fang_manoukis_pallipparambil_2021, title={Quantifying insect dispersal distances from trapping detections data to predict delimiting survey radii}, volume={146}, ISSN={["1439-0418"]}, url={https://publons.com/wos-op/publon/47440398/}, DOI={10.1111/JEN.12940}, abstractNote={Abstract}, number={1-2}, journal={JOURNAL OF APPLIED ENTOMOLOGY}, publisher={Wiley}, author={Caton, Barney P. and Fang, Hui and Manoukis, Nicholas C. and Pallipparambil, Godshen R.}, year={2021}, month={Oct} }
 @article{fang_zhang_bowman_jones_kuraparthy_2021, title={Registration of two germplasm lines with improved lint yield and fiber elongation in upland cotton}, volume={15}, ISSN={["1940-3496"]}, url={https://publons.com/wos-op/publon/54751099/}, DOI={10.1002/plr2.20121}, abstractNote={Abstract}, number={2}, journal={JOURNAL OF PLANT REGISTRATIONS}, author={Fang, Hui and Zhang, Kuang and Bowman, Daryl T. and Jones, Don C. and Kuraparthy, Vasu}, year={2021}, month={May}, pages={359–365} }
 @article{caton_fang_manoukis_pallipparambil_2021, title={Simulation-Based Investigation of the Performance of Delimiting Trapping Surveys for Insect Pests}, volume={114}, ISSN={["1938-291X"]}, url={https://publons.com/wos-op/publon/41676571/}, DOI={10.1093/jee/toab184}, abstractNote={Abstract}, number={6}, journal={JOURNAL OF ECONOMIC ENTOMOLOGY}, author={Caton, Barney P. and Fang, Hui and Manoukis, Nicholas C. and Pallipparambil, Godshen R.}, year={2021}, month={Dec}, pages={2581–2590} }
 @article{zhang_kuraparthy_fang_zhu_sood_jones_2019, title={High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutum L.)}, volume={20}, ISSN={["1471-2164"]}, url={https://publons.com/wos-op/publon/36765240/}, DOI={10.1186/s12864-019-6214-z}, abstractNote={Abstract}, number={1}, journal={BMC GENOMICS}, publisher={Springer Science and Business Media LLC}, author={Zhang, Kuang and Kuraparthy, Vasu and Fang, Hui and Zhu, Linglong and Sood, Shilpa and Jones, Don C.}, year={2019}, month={Nov} }
 @article{fang_bowman_zhang_zhu_jones_kuraparthy_2019, title={Registration of Four Germplasm Lines of Upland Cotton with High Fiber Quality}, volume={13}, ISSN={["1940-3496"]}, url={https://publons.com/wos-op/publon/31419926/}, DOI={10.3198/jpr2019.02.0005crg}, abstractNote={Four upland cotton (Gossypium hirsutum L.) germplasm lines, NC18‐11 (Reg. no. GP‐1056, PI 690771), NC18‐12 (Reg. no. GP‐1057, PI 690772), NC18‐13 (Reg. no. GP‐1058, PI 690773), and NC18‐14 (Reg. no. GP‐1059, PI 690774), were developed by the Department of Crop and Soil Sciences at North Carolina State University. These four cotton lines had improved fiber quality traits and exhibited 915.5 to 1180.9 kg ha−1 lint yield. All four lines were derived from a random mated population using multiple parental lines. The four lines were compared with commercial cultivars ‘DP393’, ‘Sure‐Grow 747’, and ‘UA48’ over 2 yr using a replicated randomized complete block design in Clayton, NC. Lines NC18‐11, NC18‐12, and NC18‐13 had significantly (p = 0.05) better micronaire values than the checks and significantly higher strength values (8.3–25.3%) than DP393, Sure‐Grow 747, and the parental lines. These three lines also had significantly (p = 0.05) greater upper half mean length values (4.9–11.6%) than DP393 and Sure‐Grow 747. Germplasm line NC18‐14 had a 15.4 to 62.5% significantly (p = 0.05) higher fiber elongation value than all checks and parental lines and showed 5.0 to 12.8% more lint fraction than the checks. These lines could be additional sources of genetic variability for cotton breeding programs focusing on improving fiber quality traits while still producing more than 900 kg ha−1 of lint.}, number={3}, journal={JOURNAL OF PLANT REGISTRATIONS}, author={Fang, Hui and Bowman, Daryl T. and Zhang, Kuang and Zhu, Linglong and Jones, Don C. and Kuraparthy, Vasu}, year={2019}, month={Sep}, pages={401–405} }
 @article{fang_zhang_bowman_jones_kuraparthy_2019, title={Registration of Four Germplasm Lines of Upland Cotton with High Lint Yield}, volume={13}, ISSN={["1940-3496"]}, url={https://publons.com/wos-op/publon/31419922/}, DOI={10.3198/jpr2018.12.0079crg}, abstractNote={Four upland cotton (Gossypium hirsutum L.) lines, NC18‐07 (Reg. no. GP‐1052, PI 690767), NC18‐08 (Reg. no. GP‐1053, PI 690768), NC18‐09 (Reg. no. GP‐1054, PI 690769), and NC18‐10 (Reg. no. GP‐1055, PI 690770), were developed by the Department of Crop and Soil Sciences at North Carolina State University. The four upland cotton lines have improved yield production and some good fiber quality traits. All four lines were derived from a random mated population using multiple parental lines. These four lines were compared with commercial check cultivars ‘DP393’, ‘Sure‐Grow 747’, and ‘UA48’ over 2 yr in Clayton, NC. NC18‐07 produced 7.6 to 34.2% greater lint yields than that of the checks and had 15.2% greater elongation value than that of UA48. NC18‐08 produced 5.9 to 32.1% greater lint yield than the checks. NC18‐09 yielded 2.2 to 27.5% greater lint than checks and showed 44.7 and 22.3% greater elongation values than that of UA48 and parental lines, respectively. Germplasm line NC18‐10 produced 1.0 to 26.0% greater lint yield than the commercial checks and also displayed 26.5 and 7.0% greater elongation values than that of UA48 and parental lines, respectively. These lines could be valuable sources for cotton breeding and programs focusing on improving yield as well as fiber elongation.}, number={3}, journal={JOURNAL OF PLANT REGISTRATIONS}, author={Fang, Hui and Zhang, Kuang and Bowman, Daryl T. and Jones, Don C. and Kuraparthy, Vasu}, year={2019}, month={Sep}, pages={396–400} }
 @article{kaur_kuraparthy_bacheler_fang_bowman_2018, title={Screening Germplasm and Quantification of Components Contributing to Thrips Resistance in Cotton}, volume={111}, ISSN={["1938-291X"]}, url={https://publons.com/wos-op/publon/31419923/}, DOI={10.1093/jee/toy201}, abstractNote={Abstract Three hundred and ninety-one Gossypium hirsutum and 34 Gossypium barbadense accessions were screened for thrips resistance under field conditions at the Upper Coastal Plain Research Station in Rocky Mount, North Carolina in years 2014 and 2015. Visual damage ratings, thrips counts, and seedling dry weights were recorded at 2.5, 3.5, and 4.5 wk after planting, respectively. Population density and thrips arrival times varied between years. Data from the three separate damage scoring dates provided a better estimate of resistance or susceptibility to thrips than ratings from the individual dates over the season. Tobacco thrips [Frankliniella fusca (Hinds) (Thysanoptera: Thripidae)], followed by western flower thrips [Frankliniella occidentalis (Pergande) (Thysanoptera: Thripidae)], were the dominant thrips species observed in the study. Five resistant G. barbadense accessions and five moderately resistant upland cotton accessions were identified from field evaluations. Greenhouse experiments were conducted in Fall 2015 and Spring 2016 to determine if plant height, growth rate, leaf pubescence, and leaf area were significantly different in resistant and susceptible groups of G. hirsutum and G. barbadense accessions identified from the field screenings. Leaf pubescence and relative growth rate were significantly higher in resistant accessions compared with susceptible accessions in absence of thrips. There was no difference for plant height and leaf area between resistant and susceptible groups. Results suggest thrips-resistant plants have a possible competitive advantage through faster growth and higher trichome density, which limits thrips movement.}, number={5}, journal={JOURNAL OF ECONOMIC ENTOMOLOGY}, publisher={Oxford University Press (OUP)}, author={Kaur, Baljinder and Kuraparthy, Vasu and Bacheler, Jack and Fang, Hui and Bowman, Daryl T.}, year={2018}, month={Oct}, pages={2426–2434} }
 @article{li_an_angelovici_bagaza_batushansky_clark_coneva_donoghue_edwards_fajardo_et al._2018, title={Topological Data Analysis as a Morphometric Method: Using Persistent Homology to Demarcate a Leaf Morphospace}, volume={9}, ISSN={["1664-462X"]}, url={https://publons.com/wos-op/publon/12063358/}, DOI={10.3389/fpls.2018.00553}, abstractNote={Current morphometric methods that comprehensively measure shape cannot compare the disparate leaf shapes found in seed plants and are sensitive to processing artifacts. We explore the use of persistent homology, a topological method applied as a filtration across simplicial complexes (or more simply, a method to measure topological features of spaces across different spatial resolutions), to overcome these limitations. The described method isolates subsets of shape features and measures the spatial relationship of neighboring pixel densities in a shape. We apply the method to the analysis of 182,707 leaves, both published and unpublished, representing 141 plant families collected from 75 sites throughout the world. By measuring leaves from throughout the seed plants using persistent homology, a defined morphospace comparing all leaves is demarcated. Clear differences in shape between major phylogenetic groups are detected and estimates of leaf shape diversity within plant families are made. The approach predicts plant family above chance. The application of a persistent homology method, using topological features, to measure leaf shape allows for a unified morphometric framework to measure plant form, including shapes, textures, patterns, and branching architectures.}, journal={FRONTIERS IN PLANT SCIENCE}, publisher={Frontiers Media SA}, author={Li, Mao and An, Hong and Angelovici, Ruthie and Bagaza, Clement and Batushansky, Albert and Clark, Lynn and Coneva, Viktoriya and Donoghue, Michael J. and Edwards, Erika and Fajardo, Diego and et al.}, year={2018}, month={Apr} }
 @article{andres_coneva_frank_tuttle_samayoa_han_kaur_zhu_fang_bowman_et al._2017, title={Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)}, volume={114}, DOI={10.1101/062612}, abstractNote={Abstract}, number={1}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Andres, R. J. and Coneva, V. and Frank, M. H. and Tuttle, J. R. and Samayoa, L. F. and Han, S. W. and Kaur, B. and Zhu, L. L. and Fang, Hui and Bowman, D. T. and et al.}, year={2017}, pages={E57–66} }
 @article{fang_zhou_sanogo_zhang_2014, title={Development of STS markers for Verticillium wilt resistance in cotton based on RGA–AFLP analysis}, volume={34}, url={http://dx.doi.org/10.1007/s11032-014-0085-4}, DOI={10.1007/s11032-014-0085-4}, number={3}, journal={Molecular Breeding}, publisher={Springer Science and Business Media LLC}, author={Fang, Hui and Zhou, Huiping and Sanogo, Soum and Zhang, Jinfa}, year={2014}, month={Oct}, pages={917–926} }
 @article{zhou_fang_sanogo_hughs_jones_zhang_2014, title={Evaluation of Verticillium wilt resistance in commercial cultivars and advanced breeding lines of cotton}, volume={196}, url={http://dx.doi.org/10.1007/s10681-013-1045-5}, DOI={10.1007/s10681-013-1045-5}, number={3}, journal={Euphytica}, publisher={Springer Science and Business Media LLC}, author={Zhou, Huiping and Fang, Hui and Sanogo, Soum and Hughs, Sidney E. and Jones, Don C. and Zhang, Jinfa}, year={2014}, month={Apr}, pages={437–448} }
 @article{zhang_fang_zhou_sanogo_ma_2014, title={Genetics, Breeding, and Marker‐Assisted Selection for Verticillium Wilt Resistance in Cotton}, volume={54}, url={http://dx.doi.org/10.2135/cropsci2013.08.0550}, DOI={10.2135/cropsci2013.08.0550}, abstractNote={ABSTRACT}, number={4}, journal={Crop Science}, publisher={Wiley}, author={Zhang, Jinfa and Fang, Hui and Zhou, Huiping and Sanogo, Soum and Ma, Zhiying}, year={2014}, month={Jul}, pages={1289–1303} }
 @article{fang_zhou_sanogo_lipka_fang_percy_hughs_jones_gore_zhang_2014, title={Quantitative trait locus analysis of Verticillium wilt resistance in an introgressed recombinant inbred population of Upland cotton}, volume={33}, url={http://dx.doi.org/10.1007/s11032-013-9987-9}, DOI={10.1007/s11032-013-9987-9}, number={3}, journal={Molecular Breeding}, publisher={Springer Science and Business Media LLC}, author={Fang, Hui and Zhou, Huiping and Sanogo, Soum and Lipka, Alexander E. and Fang, David D. and Percy, Richard G. and Hughs, Sidney E. and Jones, Don C. and Gore, Michael A. and Zhang, Jinfa}, year={2014}, month={Mar}, pages={709–720} }
 @article{inheritance and transfer of thrips resistance from pima cotton to upland cotton_2013, url={https://www.cotton.org/journal/2013-17/3/}, journal={Journal of Cotton Science}, year={2013}, month={Feb} }
 @article{fang_zhou_sanogo_flynn_percy_hughs_ulloa_jones_zhang_2013, title={Quantitative trait locus mapping for Verticillium wilt resistance in a backcross inbred line population of cotton (Gossypium hirsutum × Gossypium barbadense) based on RGA-AFLP analysis}, volume={194}, url={http://dx.doi.org/10.1007/s10681-013-0965-4}, DOI={10.1007/s10681-013-0965-4}, number={1}, journal={Euphytica}, publisher={Springer Science and Business Media LLC}, author={Fang, Hui and Zhou, Huiping and Sanogo, Soum and Flynn, Robert and Percy, Richard G. and Hughs, Sidney E. and Ulloa, Mauricio and Jones, Don C. and Zhang, Jinfa}, year={2013}, month={Nov}, pages={79–91} }
 @article{revilla-molina_bastiaans_keulen_kropff_hui_castilla_mew_zhu_leung_2009, title={Does resource complementarity or prevention of lodging contribute to the increased productivity of rice varietal mixtures in Yunnan, China?}, volume={111}, url={http://dx.doi.org/10.1016/j.fcr.2009.01.003}, DOI={10.1016/j.fcr.2009.01.003}, abstractNote={We conducted an experiment in Gejiu, Yunnan Province of China during the wet season of 2002 to examine the importance of resource complementarity and prevention of lodging in the fast-spreading practice of growing rice varietal mixtures in China to suppress rice blast disease and its associated damage. The hybrid rice variety Shanyou 63 and the glutinous or sticky rice variety Huangkenuo were used to study intra- and inter-varietal competition in the rice intercropping system. The experiment was laid out as a randomized complete block design in four replications with pure stands and mixtures of both varieties at different total planting densities and mixing ratios. In half of the pure stand treatments of glutinous rice a metal frame was installed to prevent lodging. The results showed that resource complementarity between the two rice varieties, resulting from niche differentiation, was marginal and did not greatly enhance the productivity of the rice varietal mixtures. In contrast, prevention of lodging of glutinous rice was identified as an important additional advantage of growing these rice varieties in mixture.}, number={3}, journal={Field Crops Research}, publisher={Elsevier BV}, author={Revilla-Molina, I.M. and Bastiaans, L. and Keulen, H. Van and Kropff, M.J. and Hui, F. and Castilla, N.P. and Mew, T.W. and Zhu, Y.Y. and Leung, H.}, year={2009}, month={Apr}, pages={303–307} }
 @article{zhu_fang_wang_fan_yang_mew_mundt_2005, title={Panicle Blast and Canopy Moisture in Rice Cultivar Mixtures}, volume={95}, url={http://dx.doi.org/10.1094/phyto-95-0433}, DOI={10.1094/phyto-95-0433}, abstractNote={ Glutinous rice cultivars were sown after every fourth row of a nonglutinous, hybrid cultivar in an additive design. The glutinous cultivars were 35 to 40 cm taller and substantially more susceptible to blast than was the nonglutinous cultivar. Interplanting of glutinous and nonglutinous rice reduced the incidence and severity of panicle blast on the glutinous cultivars by >90%, and on the nonglutinous cultivar by 30 to 40%. Mixing increased the per unit area yield of glutinous rice by 80 to 90% relative to pure stand, whereas yield of the nonglutinous cultivar was essentially unaffected by mixing. To determine whether the different plant heights and canopy structures may contribute to a microclimate that is less favorable to blast infection, we monitored the moisture status of the glutinous cultivars in pure stand and mixture at 0800 h by measuring relative humidity at the height of the glutinous panicles using a swing psychrometer and by visually estimating the percentage of leaf area covered by dew. Averaged over the two seasons, the number of days of 100% humidity at 0800 h was 20.0 and 2.2 for pure stands and mixtures, respectively. The mean percentage of glutinous leaf area covered by dewwas 84 and 36% for the pure stands and mixtures, respectively. Although other mechanisms also were operative, reduced leaf wetness was likely a substantial contributor to panicle blast control in the mixtures. }, number={4}, journal={Phytopathology®}, publisher={Scientific Societies}, author={Zhu, You-Yong and Fang, Hui and Wang, Yun-Yue and Fan, Jin Xiang and Yang, Shi-Sheng and Mew, Twng Wah and Mundt, Christopher C.}, year={2005}, month={Apr}, pages={433–438} }