H. Thomas Banks

A Comparison of Mathematical and Statistical Modeling with Longitudinal Data: An Application to Ecological Momentary Assessment of Behavior Change in Individuals with Alcohol Use Disorder

BULLETIN OF MATHEMATICAL BIOLOGY, 85(1).

Beyond body size-new traits for new heights in trait-based modelling of predator-prey dynamics

PLOS ONE, 17(7).

Inferring pore radius and density from ultrasonic attenuation using physics-based modeling

JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 149(1), 340–347.

Correctly modeling plant-insect-herbivore-pesticide interactions as aggregate data

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 17(2), 1743–1756.

Lethal and sublethal effects of toxicants on bumble bee populations: a modelling approach

ECOTOXICOLOGY, 29(3), 237–245.

Modelling the effects of field spatial scale and natural enemy colonization behaviour on pest suppression in diversified agroecosystems

AGRICULTURAL AND FOREST ENTOMOLOGY, 22(1), 30–40.

ADAPTION OF AKAIKE INFORMATION CRITERION UNDER LEAST SQUARES FRAMEWORKS FOR COMPARISON OF STOCHASTIC MODELS

QUARTERLY OF APPLIED MATHEMATICS, 77(4), 831–859.

Analysis of compartments-in-series models of liver metabolism as partial differential equations: the effect of dispersion and number of compartments

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 16(3), 1082–1114.

Ecosystem function in predator-prey food webs-confronting dynamic models with empirical data

JOURNAL OF ANIMAL ECOLOGY, 88(2), 196–210.

Estimation of probability distributions of parameters using aggregate population data: analysis of a CAR T-cell cancer model

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 16(6), 7299–7326.

IMMUNOSUPPRESSANT TREATMENT DYNAMICS IN RENAL TRANSPLANT RECIPIENTS: AN ITERATIVE MODELING APPROACH

DISCRETE AND CONTINUOUS DYNAMICAL SYSTEMS-SERIES B, 24(6), 2781–2797.

LOCAL SENSITIVITY VIA THE COMPLEX-STEP DERIVATIVE APPROXIMATION FOR 1D PORO-ELASTIC AND PORO-VISCO-ELASTIC MODELS

MATHEMATICAL CONTROL AND RELATED FIELDS, 9(4), 623–642.

Modeling Zika Virus Transmission Dynamics: Parameter Estimates, Disease Characteristics, and Prevention

SCIENTIFIC REPORTS, 9.

Population model for the decline of Homalodisca vitripennis (Hemiptera: Cicadellidae) over a ten-year period

JOURNAL OF BIOLOGICAL DYNAMICS, 13(1), 422–446.

A MULTISCALE METHOD FOR COMPUTING EFFECTIVE PARAMETERS OF COMPOSITE ELECTROMAGNETIC MATERIALS WITH MEMORY EFFECTS

QUARTERLY OF APPLIED MATHEMATICS, 76(4), 713–738.

A numerical algorithm for constructing an individual mathematical model of HIV dynamics at cellular level

JOURNAL OF INVERSE AND ILL-POSED PROBLEMS, 26(6), 859–873.

Estimating intratumoral heterogeneity from spatiotemporal data

JOURNAL OF MATHEMATICAL BIOLOGY, 77(6-7), 1999–2022.

From theory to experimental design-Quantifying a trait-based theory of predator-prey dynamics

PLoS One, 13(4).

Improving the generation and selection of virtual populations in quantitative systems pharmacology models

[Review of ]. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 139, 15–22.

Information content in data sets: A review of methods for interrogation and model comparison

[Review of ]. JOURNAL OF INVERSE AND ILL-POSED PROBLEMS, 26(3), 423–452.

OPTIMAL DESIGN FOR DYNAMICAL MODELING OF PEST POPULATIONS

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 15(4), 993–1010.

Optimal control of immunosuppressants in renal transplant recipients susceptible to BKV infection

Optimal Control Applications and Methods, 40(2), 292–309.

RANDOM DELAY DIFFERENTIAL EQUATIONS AND INVERSE PROBLEMS FOR AGGREGATE DATA PROBLEMS

EURASIAN JOURNAL OF MATHEMATICAL AND COMPUTER APPLICATIONS, 6(4), 4–16.

The effect of pore size and density on ultrasonic attenuation in porous structures with mono-disperse random pore distribution: A two-dimensional in-silico study

JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 144(2), 709–719.

A dynamical modeling approach for analysis of longitudinal clinical trials in the presence of missing endpoints

APPLIED MATHEMATICS LETTERS, 63, 109–117.

A numerical scheme for the early steps of nucleation-aggregation models

JOURNAL OF MATHEMATICAL BIOLOGY, 74(1-2), 259–287.

AIC under the framework of least squares estimation

APPLIED MATHEMATICS LETTERS, 74, 33–45.

Continuous Structured Population Models for Daphnia magna

Bulletin of Mathematical Biology, 79(11), 2627–2648.

Dynamic Modeling of Problem Drinkers Undergoing Behavioral Treatment

BULLETIN OF MATHEMATICAL BIOLOGY, 79(6), 1254–1273.

Estimating the rate of prion aggregate amplification in yeast with a generation and structured population model

Inverse Problems in Science and Engineering, 26(2), 257–279.

Inverse problems and techniques with applications in the biological sciences

Inverse Problems in Science and Engineering, 26(2), 151–151.

Mathematical and statistical model misspecifications in modelling immune response in renal transplant recipients

Mathematical and Statistical Model Misspecifications in Modeling Immune Response in Renal Transplant Recipients. Inverse Problems in Science and Engineering, 26(2), 1–18.

Modeling bumble bee population dynamics with delay differential equations

ECOLOGICAL MODELLING, 351, 14–23.

Modelling populations of Lygus hesperus on cotton fields in the San Joaquin Valley of California: the importance of statistical and mathematical model choice

JOURNAL OF BIOLOGICAL DYNAMICS, 11(1), 25–39.

SENSITIVITY ANALYSIS IN PORO-ELASTIC AND PORO-VISCO-ELASTIC MODELS WITH RESPECT TO BOUNDARY DATA

QUARTERLY OF APPLIED MATHEMATICS, 75(4), 697–735.

SENSITIVITY VIA THE COMPLEX-STEP METHOD FOR DELAY DIFFERENTIAL EQUATIONS WITH NON-SMOOTH INITIAL DATA

QUARTERLY OF APPLIED MATHEMATICS, 75(2), 231–248.

Statistical error model comparison for logistic growth of green algae (Raphidocelis subcapitata)

Applied Mathematics Letters, 64, 213–222.

AN ADAPTIVE FEEDBACK METHODOLOGY FOR DETERMINING INFORMATION CONTENT IN STABLE POPULATION STUDIES

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 13(4), 653–671.

Aggregate data and the Prohorov Metric Framework: Efficient gradient computation

APPLIED MATHEMATICS LETTERS, 56, 1–9.

In celebration of the 60th birthday of Professor Alemdar Hasanoglu (Hasanov)

Journal of Inverse and Ill-Posed Problems, 24(2), 109–110.

Modelling Pesticide Treatment Effects on Lygus hesperus in Cotton Fields

In IFIP Advances in Information and Communication Technology (pp. 95–106).

Modelling immune response to BK virus infection and donor kidney in renal transplant recipients

INVERSE PROBLEMS IN SCIENCE AND ENGINEERING, 24(1), 127–152.

On analytical and numerical approaches to division and label structured population models

APPLIED MATHEMATICS LETTERS, 60, 81–88.

Parameter Estimation Using Unidentified Individual Data in Individual Based Models

MATHEMATICAL MODELLING OF NATURAL PHENOMENA, 11(6), 9–27.

Parameter Selection and Verification Techniques Based on Global Sens Analysis Illustrated for an HIV Model

SIAM-ASA JOURNAL ON UNCERTAINTY QUANTIFICATION, 4(1), 266–297.

Quantifying the degradation in thermally treated ceramic matrix composites

INTERNATIONAL JOURNAL OF APPLIED ELECTROMAGNETICS AND MECHANICS, Vol. 52, pp. 3–24.

Statistical parameter estimation of dielectric materials using MCMC for nonlinear hierarchical models

INTERNATIONAL JOURNAL OF APPLIED ELECTROMAGNETICS AND MECHANICS, Vol. 52, pp. 49–54.

Use of difference-based methods to explore statistical and mathematical model discrepancy in inverse problems

Journal of Inverse and Ill-Posed Problems, 24(4), 413–433.

Validation of a mathematical model for green algae (Raphidocelis Subcapitata) growth and implications for a coupled dynamical system with Daphnia magna

Applied Sciences-Basel, 6(5).

Characterisation of Elastic and Acoustic Properties of an Agar-Based Tissue Mimicking Material

ANNALS OF BIOMEDICAL ENGINEERING, 43(10), 2587–2596.

Estimation of distributed parameters in permittivity models of composite dielectric materials using reflectance

Journal of Inverse and Ill-Posed Problems, 23(5), 491–509.

Estimation of time-varying mortality rates using continuous models for Daphnia magna

APPLIED MATHEMATICS LETTERS, 44, 12–16.

Identification of thermal degradation using probabilistic models in reflectance spectroscopy

1650, 1898–1906.

Immuno-modulatory strategies for reduction of HIV reservoir cells

JOURNAL OF THEORETICAL BIOLOGY, 372, 146–158.

Information content in data sets for a nucleated-polymerization model

JOURNAL OF BIOLOGICAL DYNAMICS, 9(1), 172–197.

Model comparison tests to determine data information content

APPLIED MATHEMATICS LETTERS, 43, 10–18.

OPTIMAL DESIGN FOR PARAMETER ESTIMATION IN EEG PROBLEMS IN A 3D MULTILAYERED DOMAIN

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 12(4), 739–760.

Optimal design of non-equilibrium experiments for genetic network interrogation

APPLIED MATHEMATICS LETTERS, 40, 84–89.

Optimal sampling frequency and timing of threatened tropical bird populations: A modeling approach

ECOLOGICAL MODELLING, 303, 70–77.

Statistical validation of structured population models for Daphnia magna

Mathematical Biosciences, 266, 73–84.

UNCERTAINTY QUANTIFICATION IN MODELING HIV VIRAL MECHANICS

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 12(5), 937–964.

DYNAMIC MODELING OF BEHAVIOR CHANGE

QUARTERLY OF APPLIED MATHEMATICS, 72(2), 209–251.

Decomposition of permittivity contributions from reflectance using mechanism models

2014 american control conference (acc), 367–372.

High-order space-time finite element schemes for acoustic and viscodynamic wave equations with temporal decoupling

INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING, 98(2), 131–156.

MODEL VALIDATION FOR A NONINVASIVE ARTERIAL STENOSIS DETECTION PROBLEM

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 11(3), 427–448.

Uncertainty quantification for a model of HIV-1 patient response to antiretroviral therapy interruptions

2014 american control conference (acc), 2753–2758.

A Comparison of Stochastic Systems with Different Types of Delays

STOCHASTIC ANALYSIS AND APPLICATIONS, 31(6), 913–955.

A novel statistical analysis and interpretation of flow cytometry data

JOURNAL OF BIOLOGICAL DYNAMICS, 7(1), 96–132.

Acoustic localisation of coronary artery stenosis: Wave propagation in soft tissue mimicking gels

Artery Research, 7(3-4), 124.

Experimental design for distributed parameter vector systems

Applied Mathematics Letters, 26(1), 10–14.

Experimental design for vector output systems

Inverse Problems in Science and Engineering, 22(4), 557–590.

Material parameter estimation and hypothesis testing on a 1D viscoelastic stenosis model: Methodology

Journal of Inverse and Ill-Posed Problems, 21(1), 25–57.

Parameter selection methods in inverse problem formulation

Mathematical Modeling and Validation in Physiology: Applications to the Cardiovascular and Respiratory Systems, 2064, 43–73.

Quantifying CFSE label decay in flow cytometry data

APPLIED MATHEMATICS LETTERS, 26(5), 571–577.

Towards computational diagnosis of coronary artery disease

Artery Research, 7(3-4), 123–124.

A COMPARISON OF COMPUTATIONAL EFFICIENCIES OF STOCHASTIC ALGORITHMS IN TERMS OF TWO INFECTION MODELS

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 9(3), 487–526.

A DIVISION-DEPENDENT COMPARTMENTAL MODEL FOR COMPUTING CELL NUMBERS IN CFSE-BASED LYMPHOCYTE PROLIFERATION ASSAYS

MATHEMATICAL BIOSCIENCES AND ENGINEERING, 9(4), 699–736.

A Monte Carlo based analysis of optimal design criteria

JOURNAL OF INVERSE AND ILL-POSED PROBLEMS, 20(1), 1–37.

A functional analysis framework for modeling, estimation, and control in science and engineering

A review of selected techniques in inverse problem nonparametric probability distribution estimation

Journal of Inverse and Ill-Posed Problems, 20(4), 429–460.

A zero-sum electromagnetic evader-interrogator differential game with uncertainty

APPLICABLE ANALYSIS, 91(4), 645–674.

Experimental design and inverse problems in plant biological modeling

Journal of Inverse and Ill-Posed Problems, 20(2), 169–191.

Mathematical Models of Dividing Cell Populations: Application to CFSE Data

Mathematical Modelling of Natural Phenomena, 7(5), 24–52.

Modelling and optimal control of immune response of renal transplant recipients

JOURNAL OF BIOLOGICAL DYNAMICS, 6(2), 539–567.

Preface. Distributed Parameter Systems in Immunology

Mathematical Modelling of Natural Phenomena, 7(5), 1–3.

Propagation of Growth Uncertainty in a Physiologically Structured Population

Mathematical Modelling of Natural Phenomena, 7(5), 7–23.

Thermal based methods for damage detection and characterization in porous materials

Inverse Problems, 28(6), 065021.

A Brief Review of Elasticity and Viscoelasticity for Solids

[Review of ]. ADVANCES IN APPLIED MATHEMATICS AND MECHANICS, 3(1), 1–51.

A DETERMINISTIC METHODOLOGY FOR ESTIMATION OF PARAMETERS IN DYNAMIC MARKOV CHAIN MODELS

JOURNAL OF BIOLOGICAL SYSTEMS, 19(1), 71–100.

A new model for the estimation of cell proliferation dynamics using CFSE data

JOURNAL OF IMMUNOLOGICAL METHODS, 373(1-2), 143–160.

Comparison of optimal design methods in inverse problems

Inverse Problems, 27(7), 075002.

Dynamic evasion-interrogation games with uncertainty in the context of electromagetics

Numerical Mathematics: Theory, Methods and Applications, 4(3), 359–378.

Estimation of Cell Proliferation Dynamics Using CFSE Data

BULLETIN OF MATHEMATICAL BIOLOGY, 73(1), 116–150.

Host immune responses that promote initial HIV spread

JOURNAL OF THEORETICAL BIOLOGY, 289, 17–35.

Parameter estimation for the heat equation on perforated domains

Journal of Inverse and Ill-Posed Problems, 19(6), 825–857.

Receding Horizon Control of HIV

OPTIMAL CONTROL APPLICATIONS & METHODS, 32(6), 681–699.

A discrete events delay differential system model for transmission of Vancomycin-resistant enterococcus (VRE) in hospitals

Journal of Inverse and Ill-Posed Problems, 18(7), 787–821.

DYNAMIC SOCIAL NETWORK MODELS INCORPORATING STOCHASTICITY AND DELAYS

QUARTERLY OF APPLIED MATHEMATICS, 68(4), 783–802.