Heike Inge Sederoff

Hornstein, E. D., Charles, M., Franklin, M., Edwards, B., Vintila, S., Kleiner, M., & Sederoff, H. (2024). <i>IPD3</i>, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host <i>Arabidopsis</i> when restored long after its evolutionary loss. PLANT MOLECULAR BIOLOGY, 114(2). https://doi.org/10.1007/s11103-024-01422-3

Budnick, A., Franklin, M. J., Utley, D., Edwards, B., Charles, M., Hornstein, E. D., & Sederoff, H. (2024, January 20). Long- and short-read sequencing methods discover distinct circular RNA pools in <i>Lotus japonicus</i>. PLANT GENOME, Vol. 1. https://doi.org/10.1002/tpg2.20429

Hornstein, E. D., & Sederoff, H. (2023, September 13). Back to the Future: Re-Engineering the Evolutionarily Lost Arbuscular Mycorrhiza Host Trait to Improve Climate Resilience for Agriculture. CRITICAL REVIEWS IN PLANT SCIENCES, Vol. 9. https://doi.org/10.1080/07352689.2023.2256093

Charles, M., Edwards, B., Ravishankar, E., Calero, J., Henry, R., Rech, J., … Sederoff, H. (2023). Emergent molecular traits of lettuce and tomato grown under wavelength-selective solar cells. FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1087707

Liu, C., Wang, S., Liu, Y., Wang, M., Fan, E., Liu, C., … Qu, G. (2023, May 4). Exceptionally high genetic variance of the doubled haploid (DH) population of poplar. JOURNAL OF FORESTRY RESEARCH, Vol. 5. https://doi.org/10.1007/s11676-023-01612-7

Hornstein, E. D., Charles, M., Franklin, M., Edwards, B., Vintila, S., Kleiner, M., & Sederoff, H. (2023, March 7). Re-engineering a lost trait:IPD3, a master regulator of arbuscular mycorrhizal symbiosis, affects genes for immunity and metabolism of non-host Arabidopsis when restored long after its evolutionary loss. https://doi.org/10.1101/2023.03.06.531368

Zhao, Y., Yuan, Z., Wang, S., Wang, H., Chao, Y., Sederoff, R. R., … Niu, B. (2022). Gene sdaB Is Involved in the Nematocidal Activity of Enterobacter ludwigii AA4 Against the Pine Wood Nematode Bursaphelenchus xylophilus. FRONTIERS IN MICROBIOLOGY, 5. https://doi.org/10.3389/fmicb.2022.870519

Edwards, B., Hornstein, E. D., Wilson, N. J., & Sederoff, H. (2022). High-throughput detection of T-DNA insertion sites for multiple transgenes in complex genomes. BMC GENOMICS, 23(1). https://doi.org/10.1186/s12864-022-08918-6

Ravishankar, E., Booth, R. E., Hollingsworth, J. A., Ade, H., Sederoff, H., DeCarolis, J. F., & Brendan T. O'Connor. (2022, March 10). Organic solar powered greenhouse performance optimization and global economic opportunity. ENERGY & ENVIRONMENTAL SCIENCE, Vol. 15. https://doi.org/10.1039/D1EE03474J

Wang, H., Lu, Y., Zhang, T., Liu, Z., Cao, L., Chang, Q., … Zheng, Z. (2022, December 10). The double flower variant of yellowhorn is due to a LINE1 transposon-mediated insertion. PLANT PHYSIOLOGY, Vol. 12. https://doi.org/10.1093/plphys/kiac571

Li, Y., Li, X., Zhao, M.-H., Pang, Z.-Y., Wei, J.-T., Tigabu, M., … Zhao, X.-Y. (2021). [Review of An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use]. HORTICULTURAE, 7(8). https://doi.org/10.3390/horticulturae7080252

Ravishankar, E., Charles, M., Xiong, Y., Henry, R., Swift, J., Rech, J., … Brendan T. O'Connor. (2021). Balancing crop production and energy harvesting in organic solar-powered greenhouses. CELL REPORTS PHYSICAL SCIENCE, 2(3). https://doi.org/10.1016/j.xcrp.2021.100381

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). Epigenetic modification associated with climate regulates betulin biosynthesis in birch. JOURNAL OF FORESTRY RESEARCH, Vol. 12. https://doi.org/10.1007/s11676-021-01424-7

Liu, C., Li, K., Wang, M., Fan, E., Yang, C., Wang, J., … Qu, G. (2021). Qu-2, a robust poplar suspension cell line for molecular biology. JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740. https://doi.org/10.1007/s11676-020-01266-9

Ravishankar, E., Booth, R. E., Saravitz, C., Sederoff, H., Ade, H. W., & Brendan T. O'Connor. (2020). Achieving Net Zero Energy Greenhouses by Integrating Semitransparent Organic Solar Cells. JOULE, 4(2), 490–506. https://doi.org/10.1016/j.joule.2019.12.018

Niu, B., Wang, W., Yuan, Z., Sederoff, R. R., Sederoff, H., Chiang, V. L., & Borriss, R. (2020). [Review of Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease]. FRONTIERS IN MICROBIOLOGY, 11. https://doi.org/10.3389/fmicb.2020.585404

Leebens-Mack, J. H., Barker, M. S., Carpenter, E. J., Deyholos, M. K., Gitzendanner, M. A., Graham, S. W., … Wong, G. K.-S. (2019). One thousand plant transcriptomes and the phylogenomics of green plants. NATURE, 574(7780), 679-+. https://doi.org/10.1038/s41586-019-1693-2

Lai, Y.-C., Karam, A. L., Sederoff, H. W., Ducoste, J. J., & de los Reyes, F. L. (2019). Relating nitrogen concentration and light intensity to the growth and lipid accumulation of Dunaliella viridis in a photobioreactor. Journal of Applied Phycology, 31(6), 3397–3409. https://doi.org/10.1007/s10811-019-01897-4

Suchoff, D. H., Perkins-Veazie, P., Sederoff, H. W., Schultheis, J. R., Kleinhenz, M. D., Louws, F. J., & Gunter, C. C. (2018). Grafting the Indeterminate Tomato Cultivar Moneymaker onto Multifort Rootstock Improves Cold Tolerance. HORTSCIENCE, 53(11), 1610–1617. https://doi.org/10.21273/HORTSCI13311-18

Dums, J., Murphree, C., Vasani, N., Young, D., & Sederoff, H. (2018). Metabolic and Transcriptional Profiles of Dunaliella viridis Supplemented With Ammonium Derived From Glutamine. FRONTIERS IN MARINE SCIENCE, 5(AUG). https://doi.org/10.3389/fmars.2018.00311

Hu, Z., Wu, Q., Dalal, J., Vasani, N., Lopez, H. O., Sederoff, H. W., & Qu, R. (2017). Accumulation of medium-chain, saturated fatty acyl moieties in seed oils of transgenic Camelina sativa. PLOS ONE, 12(2). https://doi.org/10.1371/journal.pone.0172296

Murphree, C. A., Dums, J. T., Jain, S. K., Zhao, C. S., Young, D. Y., Khoshnoodi, N., … al. (2017). Amino Acids Are an Ineffective Fertilizer for Dunaliella spp. Growth. FRONTIERS IN PLANT SCIENCE, 8. https://doi.org/10.3389/fpls.2017.00847

Karam, A. L., McMillan, C. C., Lai, Y.-C., de los Reyes, F. L., III, Sederoff, H. W., Grunden, A. M., … Ducoste, J. J. (2017). Construction and Setup of a Bench-scale Algal Photosynthetic Bioreactor with Temperature, Light, and pH Monitoring for Kinetic Growth Tests. Journal of Visualized Experiments, 2017(124). https://doi.org/10.3791/55545

Dalal, J., Lewis, D. R., Tietz, O., Brown, E. M., Brown, C. S., Palme, K., … Sederoff, H. W. (2016). ROSY1, a novel regulator of gravitropic response is a stigmasterol binding protein. JOURNAL OF PLANT PHYSIOLOGY, 196-197, 28–40. https://doi.org/10.1016/j.jplph.2016.03.011

Dalal, J., Yalamanchili, R., Hovary, C. L., Ji, M., Rodriguez-Welsh, M., Aslett, D., … al. (2015). A novel gateway-compatible binary vector series (PC-GW) for flexible cloning of multiple genes for genetic transformation of plants. PLASMID, 81, 55–62. https://doi.org/10.1016/j.plasmid.2015.06.003

Dalal, J., Lopez, H., Vasani, N. B., Hu, Z., Swift, J. E., Yalamanchili, R., … Sederoff, H. W. (2015). A photorespiratory bypass increases plant growth and seed yield in biofuel crop Camelina sativa. BIOTECHNOLOGY FOR BIOFUELS, 8(1). https://doi.org/10.1186/s13068-015-0357-1

Delaux, P.-M., Radhakrishnan, G. V., Jayaraman, D., Cheem, J., Malbreil, M., Volkening, J. D., … Ane, J.-M. (2015). Algal ancestor of land plants was preadapted for symbiosis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 112(43), 13390–13395. https://doi.org/10.1073/pnas.1515426112

Srirangan, S., Sauer, M.-L., Howard, B., Dvora, M., Dums, J., Backman, P., & Sederoff, H. (2015). Interaction of Temperature and Photoperiod Increases Growth and Oil Content in the Marine Microalgae Dunaliella viridis. PLOS ONE, 10(5). https://doi.org/10.1371/journal.pone.0127562

Dalal, J., Land, E., Vasani, N., He, L., Smith, C., Rodriguez-Welsh, M., … Sederoff, H. (2015). Methods for RNA Profiling of Gravi-Responding Plant Tissues. In Methods in Molecular Biology (Vol. 1309, pp. 91–117). https://doi.org/10.1007/978-1-4939-2697-8_9

Fang, G.-C., Blackmon, B. P., Staton, M. E., Nelson, C. D., Kubisiak, T. L., Olukolu, B. A., … Abbott, A. G. (2013). A physical map of the Chinese chestnut (Castanea mollissima) genome and its integration with the genetic map. TREE GENETICS & GENOMES, 9(2), 525–537. https://doi.org/10.1007/s11295-012-0576-6

Wang, W.-C., Allen, E., Campos, A. A., Cade, R. K., Dean, L., Dvora, M., … Roberts, W. L. (2013). ASI: Dunaliella marine microalgae to drop-in replacement liquid transportation fuel. Environmental Progress & Sustainable Energy, 32(4), 916–925. https://doi.org/10.1002/EP.11855

Howard, B. E., Hu, Q., Babaoglu, A. C., Chandra, M., Borghi, M., Tan, X., … Heber, S. (2013). High-Throughput RNA Sequencing of Pseudomonas-Infected Arabidopsis Reveals Hidden Transcriptome Complexity and Novel Splice Variants. PLOS ONE, 8(10). https://doi.org/10.1371/journal.pone.0074183

Rueschhoff, E. E., Gillikin, J. W., Sederoff, H. W., & Daub, M. E. (2013). The SOS4 pyridoxal kinase is required for maintenance of vitamin B-6-mediated processes in chloroplasts. PLANT PHYSIOLOGY AND BIOCHEMISTRY, 63, 281–291. https://doi.org/10.1016/j.plaphy.2012.12.003

Tsou, P.-L., Lee, S. Y., Allen, N. S., Winter-Sederoff, H., & Robertson, D. (2012). An ER-targeted calcium-binding peptide confers salt and drought tolerance mediated by CIPK6 in Arabidopsis. PLANTA, 235(3), 539–552. https://doi.org/10.1007/s00425-011-1522-9

Silva, K., Laska, B., Brown, C., Sederoff, H. W., & Khodakovskaya, M. (2011). Arabidopsis thaliana calcium-dependent lipid-binding protein (AtCLB): a novel repressor of abiotic stress response. JOURNAL OF EXPERIMENTAL BOTANY, 62(8), 2679–2689. https://doi.org/10.1093/jxb/erq468

Boss, W. F., Sederoff, H. W., Im, Y. J., Moran, N., Grunden, A. M., & Perera, I. Y. (2010). Basal Signaling Regulates Plant Growth and Development. PLANT PHYSIOLOGY, 154(2), 439–443. https://doi.org/10.1104/pp.110.161232

Henry Lamb, H., Burkholder, J., Roberts, W. L., Sederoff, H. W., & Strikeleather, L. F. (2010). EFRI-HyBi: Algal oils to "drop-in" replacements for petroleum transportation fuels. ACS National Meeting Book of Abstracts. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-79951504751&partnerID=MN8TOARS

Khodakovskaya, M., Sword, C., Wu, Q., Perera, I. Y., Boss, W. F., Brown, C. S., & Sederoff, H. (2010). Increasing inositol (1,4,5)-trisphosphate metabolism affects drought tolerance, carbohydrate metabolism and phosphate-sensitive biomass increases in tomato. Plant Biotechnology Journal, 8(2), 170–183. https://doi.org/10.1111/j.1467-7652.2009.00472.x

Novaes, E., Kirst, M., Chiang, V., Winter-Sederoff, H., & Sederoff, R. (2010). Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees. PLANT PHYSIOLOGY, 154(2), 555–561. https://doi.org/10.1104/pp.110.161281

Salinas Mondragon, R. E., Kajla, J. D., Perera, I. Y., Brown, C. S., & Sederoff, H. W. (2010). Role of inositol 1,4,5-triphosphate signalling in gravitropic and phototropic gene expression. Plant, Cell & Environment, 33(12), 2041–2055. https://doi.org/10.1111/j.1365-3040.2010.02204.x

Brown, C. S., Sederoff, H. W., Davies, E., Ferl, R. J., & Stankovic, B. (2008). Plan(t)s for Space Exploration. In Plant Tropisms (pp. 183–195). https://doi.org/10.1002/9780470388297.ch9

Howard, B. E., Sick, B., Perera, I., Im, Y. J., Winter-Sederoff, H., & Heber, S. (2007). Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes Classifier. 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering, 145–150. https://doi.org/10.1109/BIBE.2007.4375557

Kimbrough, J. M., Brown, C. S., & Sederoff, H. W. (2005). Co-expression and hormonal regulation of genes in response to gravity and mechanical stimulation in the Arabidopsis root apex. Gravitational and Space Biology Bulletin : Publication of the American Society for Gravitational and Space Biology, 18(2), 117–118. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-26944462406&partnerID=MN8TOARS

Salinas-Mondragon, R., Brogan, A., Ward, N., Perera, I., Boss, W., Brown, C. S., & Sederoff, H. W. (2005). Gravity and light: integrating transcriptional regulation in roots. Gravitational and Space Biology Bulletin : Publication of the American Society for Gravitational and Space Biology, 18(2), 121–122. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-24944540197&partnerID=MN8TOARS

Hardin, S. C., Winter, H., & Huber, S. C. (2004). Phosphorylation of the amino terminus of maize sucrose synthase in relation to membrane association and enzyme activity. PLANT PHYSIOLOGY, 134(4), 1427–1438. https://doi.org/10.1104/pp.103.036780

Kimbrough, J. M., Salinas-Mondragon, R., Boss, W. E., Brown, C. S., & Sederoff, H. W. (2004). The fast and transient transcriptional network of gravity and mechanical stimulation in the Arabidopsis root Apex. PLANT PHYSIOLOGY, 136(1), 2790–2805. https://doi.org/10.1104/pp.104.044594

Hardin, S. C., Tang, G. Q., Scholz, A., Holtgraewe, D., Winter, H., & Huber, S. C. (2003). Phosphorylation of sucrose synthase at serine 170: occurrence and possible role as a signal for proteolysis. PLANT JOURNAL, 35(5), 588–603. https://doi.org/10.1046/j.1365-313X.2003.01831.x

Smith, P. M. C., Winter, H., Storer, P. J., Bussell, J. D., Schuller, K. A., & Atkins, C. A. (2002). Effect of short-term N<inf>2</inf> deficiency on expression of the ureide pathway in cowpea root nodules. Plant Physiology, 129(3), 1216–1221. https://doi.org/10.1104/pp.010714

Winter, H., & Huber, S. C. (2000). Regulation of sucrose metabolism in higher plants: Localization and regulation of activity of key enzymes. Critical Reviews in Plant Sciences, 19(1), 31–67. https://doi.org/10.1080/07352680091139178

Winter, H., & Huber, S. C. (2000). [Review of Regulation of sucrose metabolism in higher plants: Localization and regulation of activity of key enzymes]. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY, 35(4), 253–289. https://doi.org/10.1080/10409230008984165

Kuzma, M. M., Winter, H., Storer, P., Oresnik, I., Atkins, C. A., & Layzell, D. B. (1999). The site of oxygen limitation in soybean nodules. PLANT PHYSIOLOGY, 119(2), 399–407. https://doi.org/10.1104/pp.119.2.399

Collings, D. A., Winter, H., Wyatt, S. E., & Allen, N. S. (1998). Growth dynamics and cytoskeleton organization during stem maturation and gravity-induced stem bending in Zea mays L. PLANTA, 207(2), 246–258. https://doi.org/10.1007/s004250050480

Winter, H., Huber, J. L., & Huber, S. C. (1998). Identification of sucrose synthase as an actin-binding protein. FEBS LETTERS, 430(3), 205–208. https://doi.org/10.1016/S0014-5793(98)00659-0

Winter, H., Huber, J. L., & Huber, S. C. (1997). Membrane association of sucrose synthase: changes during the graviresponse and possible control by protein phosphorylation. FEBS LETTERS, 420(2-3), 151–155. https://doi.org/10.1016/S0014-5793(97)01506-8

Wadham, C., Winter, H., & Schuller, K. A. (1996). Regulation of soybean nodule phosphoenolpyruvate carboxylase in vivo. Physiologia Plantarum, 97(3), 531–535. https://doi.org/10.1034/j.1399-3054.1996.970316.x

Riens, B., Lohaus, G., Winter, H., & Heldt, H. W. (1994). Production and diurnal utilization of assimilates in leaves of spinach (Spinacia oleracea L.) and barley (Hordeum vulgare L.). Planta, 192(4), 497–501. https://doi.org/10.1007/BF00203587

Winter, H., Robinson, D. G., & Heldt, H. W. (1994). Subcellular volumes and metabolite concentrations in spinach leaves. Planta, 193(4), 530–535. https://doi.org/10.1007/BF02411558

Winter, H., Robinson, D. G., & Heldt, H. W. (1993). Subcellular volumes and metabolite concentrations in barley leaves. Planta, 191(2), 180–190. https://doi.org/10.1007/BF00199748

Winter, H., Lohaus, G., & Heldt, H. W. (1992). Phloem transport of amino acids in relation to their cytosolic levels in barley leaves. Plant Physiology, 99(3), 996–1004. https://doi.org/10.1104/pp.99.3.996