Works (105)

Updated: November 3rd, 2023 05:00

2023 journal article

An open-access T-BAS phylogeny for emerging Phytophthora species

PLOS ONE, 18(4).

By: A. Coomber n, A. Saville n, I. Carbone n & J. Ristaino n

co-author countries: United States of America 🇺🇸

Ed(s): J. Blair

MeSH headings : Phylogeny; Phytophthora / genetics; Genotype
Sources: ORCID, Web Of Science
Added: April 4, 2023

2023 article

Ancient Rapid Radiation Explains Most Conflicts Among Gene Trees and Well-Supported Phylogenomic Trees of Nostocalean Cyanobacteria

Hoz, C. J., Magain, N., Piatkowski, B., Cornet, L., Dal Forno, M., Carbone, I., … Lutzoni, F. (2023, February 24). (C. Lemus-Solis, Ed.). SYSTEMATIC BIOLOGY, Vol. 2.

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸

Ed(s): C. Lemus-Solis

MeSH headings : Phylogeny; Genome; Biological Evolution; Prokaryotic Cells; Cyanobacteria / genetics
Sources: Web Of Science, ORCID
Added: May 15, 2023

2023 journal article

Cassava begomovirus species diversity changes during plant vegetative cycles

FRONTIERS IN MICROBIOLOGY, 14.

By: A. Dye n, B. Muga*, J. Mwangi*, J. Hoyer*, V. Ly n, Y. Rosado n, W. Sharpee n, B. Mware* ...

co-author countries: Kenya 🇰🇪 United States of America 🇺🇸
author keywords: plant virus; Cassava (Manihot esculenta); vegetative (asexual) propagation; vector transmission; whitefly (Bemisia tabaci)
Sources: Web Of Science, ORCID
Added: July 3, 2023

2023 journal article

Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov.

Towards a nomenclatural clarification of the Peltigera ponojensis/monticola clade including metagenomic sequencing of type material and the introduction of P. globulata Miadl. & Magain sp. nov. LICHENOLOGIST, 55(5), 315–324.

co-author countries: Belgium 🇧🇪 Finland 🇫🇮 United States of America 🇺🇸
author keywords: Andean lichens; cyanolichens; new species; species complex; taxonomy
Sources: Web Of Science, ORCID
Added: October 30, 2023

2022 journal article

Adaptation of Phytophthora nicotianae to Multiple Sources of Partial Resistance in Tobacco

PLANT DISEASE, 106(3), 906–917.

By: J. Jin n, K. McCorkle n, V. Cornish n, I. Carbone n, R. Lewis n & H. Shew n

co-author countries: United States of America 🇺🇸
author keywords: adaptation; ddRADseq; host resistance; Nicotiana rustica; Phytophthora nicotianae; tobacco
MeSH headings : Genotype; Phytophthora / genetics; Plant Diseases / genetics; Quantitative Trait Loci / genetics; Tobacco / genetics
Sources: Web Of Science, ORCID
Added: July 26, 2022

2022 journal article

An experimental strategy for preparing circular ssDNA virus genomes for next-generation sequencing

JOURNAL OF VIROLOGICAL METHODS, 300.

By: C. Aimone n, J. Hoyer*, A. Dye n, D. Deppong n, S. Duffy*, I. Carbone n, L. Hanley-Bowdoin n

co-author countries: United States of America 🇺🇸
author keywords: Phi29; EquiPhi29; MiSeq; Whiteflies; Viral DNA sequencing
MeSH headings : DNA Viruses / genetics; DNA, Circular / genetics; DNA, Viral / genetics; Genome, Viral; High-Throughput Nucleotide Sequencing
Sources: Web Of Science, ORCID
Added: March 7, 2022

2022 journal article

Asymmetrical lineage introgression and recombination in populations of Aspergillus flavus: Implications for biological control

PLOS ONE, 17(10).

By: M. Molo n, J. White n, V. Cornish n, R. Gell n, O. Baars n, R. Singh n, M. Carbone n, T. Isakeit* ...

co-author countries: United States of America 🇺🇸

Ed(s): W. Nierman

MeSH headings : Aspergillus flavus / genetics; Aflatoxins / genetics; Biological Control Agents; Zea mays / genetics; Zea mays / microbiology; Recombination, Genetic
Sources: Web Of Science, ORCID
Added: October 28, 2022

2022 article

Dataset for transcriptomic profiles associated with development of sexual structures in Aspergillus flavus

Luis, J. M., Carbone, I., Mack, B. M., Lebar, M. D., Cary, J. W., Gilbert, M. K., … Ojiambo, P. S. (2022, June). DATA IN BRIEF, Vol. 42.

By: J. Luis n, I. Carbone n, B. Mack*, M. Lebar*, J. Cary*, M. Gilbert*, D. Bhatnagar*, C. Wientjes* ...

co-author countries: United States of America 🇺🇸
author keywords: Fertility; Sclerotia; Sexual development; Transcriptional analysis
Sources: Web Of Science, ORCID
Added: April 25, 2022

2022 journal article

Development of sexual structures influences metabolomic and transcriptomic profiles in Aspergillus flavus

FUNGAL BIOLOGY, 126(3), 187–200.

By: J. Luis n, I. Carbone n, B. Mack*, M. Lebar*, J. Cary*, M. Gilbert*, D. Bhatnagar*, C. Wientjes* ...

co-author countries: United States of America 🇺🇸
author keywords: Fertility; Sclerotia; Secondary metabolites; Sexual development; Transcriptional analysis
MeSH headings : Aflatoxins / metabolism; Aspergillus flavus; Gene Expression Profiling; Metabolomics; Reproduction / genetics; Transcriptome
Sources: Web Of Science, ORCID
Added: March 14, 2022

2022 article

Gene Flow of Phytophthora infestans Between Refuse Piles, and Organic and Conventional Potato Fields in Southern Flevoland, The Netherlands

Hu, C.-H., Govers, F., Carbone, I., & Ristaino, J. B. (2022, November 5). POTATO RESEARCH, Vol. 11.

By: C. Hu n, F. Govers*, I. Carbone n & J. Ristaino n

co-author countries: Netherlands 🇳🇱 United States of America 🇺🇸
author keywords: Gene flow; Late blight; Potatoes; Ras gene; Rpl14; Rpl5; tRNAs and cox1
Sources: ORCID, Web Of Science
Added: November 5, 2022

2022 article

Microbial Diversity in Four Rhizocompartments (Bulk Soil, Rhizosphere, Rhizoplane, and Endosphere) of Four Winter Wheat Varieties at the Fully Emerged Flag Leaf Growth Stage

Ahmad, J., Zervas, A., Ellegaard-Jensen, L., Hennessy, R. C., Carbone, I., Cornish, V., … Nicolaisen, M. H. (2022, October 6). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 10.

co-author countries: Denmark 🇩🇰 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: October 24, 2022

2022 journal article

Rapid Multilocus Adaptation of Clonal Cabbage Leaf Curl Virus Populations to Arabidopsis thaliana

PHYTOBIOMES JOURNAL, 6(3), 227–235.

By: J. Hoyer*, O. Wilkins n, A. Munshi n, E. Wiese n, D. Dubey*, S. Renard n, K. Mortensen n, A. Dye n ...

co-author countries: United States of America 🇺🇸
author keywords: begomovirus mutation; genomics; molecular biology; plant pathology; rapid adaptation; virology; within-host population variability
Sources: Web Of Science, ORCID
Added: April 11, 2023

2022 journal article

Recombination-aware phylogeographic inference using the structured coalescent with ancestral recombination

PLOS COMPUTATIONAL BIOLOGY, 18(8).

By: F. Guo n, I. Carbone n & D. Rasmussen n

co-author countries: United States of America 🇺🇸
MeSH headings : Genetics, Population; Genome; Humans; Models, Genetic; Phylogeography; Population Density; Recombination, Genetic / genetics
Sources: Web Of Science, ORCID
Added: March 6, 2023

2021 journal article

Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale

COMMUNICATIONS BIOLOGY, 4(1).

By: S. Oita*, A. Ibanez, F. Lutzoni*, J. Miadlikowska*, J. Geml*, L. Lewis*, E. Hom*, I. Carbone n, . Jana M. U'Ren*, A. Arnold*

co-author countries: Hungary 🇭🇺 United States of America 🇺🇸
MeSH headings : Biota; Endophytes / classification; Fungi / classification; Plant Leaves / microbiology; Rainforest; Seasons; Symbiosis; Trees / microbiology; Tropical Climate
Sources: Web Of Science, ORCID
Added: April 5, 2021

2021 journal article

Genome Resources for Seven Fungal Isolates That Cause Dollar Spot Disease in Turfgrass, Including Clarireedia jacksonii and C. monteithiana

PLANT DISEASE, 105(3), 691–694.

By: J. Crouch*, L. Beirn*, M. Boehm*, I. Carbone n, B. Clarke*, J. Kerns n, M. Malapi-Wight*, T. Mitchell*, R. Venu*, L. Tredway n

co-author countries: United States of America 🇺🇸
author keywords: Agrostis stolonifera; Cynodon dactylon; dollar spot; Festuca rubra; fungi; Paspalum vaginatum; pathogen diversity; Rutstroemiaceae; Sclerotinia homoeocarpa; turf; turfgrass
MeSH headings : Agrostis; Ascomycota / genetics; Host-Pathogen Interactions; Poaceae
Sources: Web Of Science, ORCID
Added: July 6, 2021

2021 journal article

Methodological Approaches Frame Insights into Endophyte Richness and Community Composition

MICROBIAL ECOLOGY, 82(1), 21–34.

By: S. Oita*, J. Carey*, I. Kline*, A. Ibanez*, N. Yang*, E. Hom*, I. Carbone n, . Jana M. U'Ren*, A. Arnold*

co-author countries: United States of America 🇺🇸
author keywords: Ascomycota; Diversity; Illumina; Media; Metabarcoding; Magnoliophyta; Pinophyta; Pteridophyta
MeSH headings : Endophytes / genetics; Fungi / genetics; Phylogeny; Plant Leaves; Plants
Sources: Web Of Science, ORCID
Added: February 1, 2021

2021 journal article

Parasites, niche modification and the host microbiome: A field survey of multiple parasites

MOLECULAR ECOLOGY, 30(10), 2404–2416.

co-author countries: Switzerland 🇨🇭 United States of America 🇺🇸
author keywords: biotic interactions; disease ecology; metabarcoding; microbiome; mycobiome; niche modification
MeSH headings : Animals; Host-Parasite Interactions; Microbiota / genetics; Mycobiome; Parasites / genetics; Parasitic Diseases
Sources: Web Of Science, ORCID
Added: May 17, 2021

2021 journal article

Population diversity of cassava mosaic begomoviruses increases over the course of serial vegetative propagation

JOURNAL OF GENERAL VIROLOGY, 102(7).

co-author countries: United States of America 🇺🇸
author keywords: cassava mosaic begomoviruses; vegetative propagation; viral diversity
MeSH headings : Base Sequence; Begomovirus / genetics; Begomovirus / physiology; Codon; DNA, Intergenic; DNA, Viral / genetics; Evolution, Molecular; Genetic Variation; Genome, Viral; Manihot / growth & development; Manihot / virology; Mutation; Plant Diseases / virology; Polymorphism, Single Nucleotide; Satellite Viruses / genetics; Satellite Viruses / physiology; Sequence Deletion; Temperature; Viral Proteins / genetics
Sources: Web Of Science, ORCID
Added: August 16, 2021

2020 journal article

Characterization of morphological changes within stromata during sexual reproduction inAspergillus flavus

MYCOLOGIA, 112(5), 908–920.

co-author countries: United States of America 🇺🇸
author keywords: Ascocarp; ascospore; morphogenesis; sclerotium; stroma
MeSH headings : Aspergillus flavus / cytology; Aspergillus flavus / genetics; Aspergillus flavus / growth & development; Fertility; Food Contamination; Fruiting Bodies, Fungal / cytology; Fruiting Bodies, Fungal / genetics; Fruiting Bodies, Fungal / growth & development; Genetic Variation; Genotype; Humans; Mycotoxins; Plant Development / genetics; Plant Development / physiology; Reproduction / genetics; Reproduction / physiology; Spores, Fungal / cytology; Spores, Fungal / genetics; Spores, Fungal / growth & development
Sources: Web Of Science, ORCID
Added: September 7, 2020

2019 journal article

A Response to the Letter to the Editor from Ortega-Beltran and Bandyopadhyay

Agronomy Journal, 111(5), 2629–2631.

By: M. Molo, R. Heiniger, L. Boerema & I. Carbone

Source: NC State University Libraries
Added: February 6, 2021

2019 journal article

Biocontrol Strains Differentially Shift the Genetic Structure of Indigenous Soil Populations of Aspergillus flavus

Frontiers in Microbiology, 10.

By: M. Lewis n, I. Carbone n, J. Luis n, G. Payne n, K. Bowen*, A. Hagan*, R. Kemerait*, R. Heiniger n, P. Ojiambo n

co-author countries: Georgia 🇬🇪 United States of America 🇺🇸
author keywords: aflatoxin; Aspergillus section Flavi; biological control; lineage; mating type
Sources: Web Of Science, ORCID, Crossref
Added: August 12, 2019

2019 journal article

HPLC quantitation of aflatoxin B1 from fungal mycelium culture

Journal of Microbiological Methods, 158, 14–17.

By: R. Gell n & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Aspergillus flavus; Aflatoxin B-1; HPLC; Mycotoxins
MeSH headings : Aflatoxin B1 / analysis; Aspergillus flavus / chemistry; Chromatography, High Pressure Liquid; Mycelium / chemistry
Sources: Web Of Science, ORCID, Crossref
Added: April 2, 2019

2019 journal article

Host availability drives distributions of fungal endophytes in the imperilled boreal realm

Nature Ecology & Evolution, 3(10), 1430–1437.

By: J. U’Ren*, F. Lutzoni*, J. Miadlikowska*, N. Zimmerman*, I. Carbone n, G. May*, A. Arnold*

co-author countries: United States of America 🇺🇸
MeSH headings : Ecosystem; Endophytes; North America; Phylogeny; Symbiosis
Sources: Web Of Science, ORCID, Crossref
Added: October 21, 2019

2019 journal article

Identification and characterization of Septoria steviae as the causal agent of Septoria leaf spot disease of stevia in North Carolina

Mycologia, 111(3), 456–465.

By: A. Koehler*, M. Larkin n, L. Rogers n, I. Carbone n, M. Cubeta n & H. Shew n

co-author countries: United States of America 🇺🇸
author keywords: Ascomycete; morphological characterization; phylogenetics; Stevia rebaudiana
MeSH headings : Ascomycota / genetics; Ascomycota / pathogenicity; DNA, Fungal / genetics; DNA, Ribosomal Spacer / genetics; North Carolina; Phylogeny; Plant Diseases / microbiology; Plant Leaves / microbiology; RNA, Ribosomal, 5.8S / genetics; Sequence Analysis, DNA; Stevia / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: May 13, 2019

2019 journal article

Multi-locus DNA sequence analysis, antifungal agent susceptibility, and fungal keratitis outcome in horses from Southeastern United States

PLOS ONE, 14(3), e0214214.

By: M. Cullen n, M. Jacob n, V. Cornish n, I. VanderSchel n, H. Cotter n, M. Cubeta n, I. Carbone n, B. Gilger n

co-author countries: United States of America 🇺🇸

Ed(s): O. Kniemeyer

MeSH headings : Animals; Antifungal Agents / pharmacology; Eye Infections, Fungal / drug therapy; Eye Infections, Fungal / microbiology; Eye Infections, Fungal / veterinary; Horse Diseases / drug therapy; Horse Diseases / microbiology; Horses; Keratitis / drug therapy; Keratitis / microbiology; Keratitis / veterinary; Southeastern United States; Species Specificity; Thiabendazole / pharmacology
Sources: Web Of Science, ORCID, Crossref
Added: April 15, 2019

2019 journal article

T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees

Microbiology Resource Announcements, 8(29).

By: I. Carbone n, J. White n, J. Miadlikowska*, A. Arnold*, M. Miller*, N. Magain*, J. U'Ren*, F. Lutzoni*

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸

Ed(s): C. Cuomo

Sources: Web Of Science, ORCID, Crossref
Added: August 5, 2019

2019 journal article

Trial Summary on the Comparison of Various Non-Aflatoxigenic Strains of Aspergillus flavus on Mycotoxin Levels and Yield in Maize

AGRONOMY JOURNAL, 111(2), 942–946.

By: M. Molo n, R. Heiniger n, L. Boerema n & I. Carbone n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: April 15, 2019

2018 journal article

Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass

Fungal Biology, 122(8), 761–773.

By: C. Salgado-Salazar*, L. Beirn*, A. Ismaiel*, M. Boehm*, I. Carbone n, A. Putman n, L. Tredway n, B. Clarke*, J. Crouch*

co-author countries: United States of America 🇺🇸
author keywords: Ascomycota; Leotiomycetes; Molecular phylogenetics; Rutstroemia; Sclerotinia
MeSH headings : Ascomycota / classification; Ascomycota / genetics; Ascomycota / growth & development; Ascomycota / isolation & purification; Calmodulin / genetics; Cluster Analysis; DNA, Fungal / chemistry; DNA, Fungal / genetics; DNA, Ribosomal Spacer / chemistry; DNA, Ribosomal Spacer / genetics; Microbiological Techniques; Microscopy; Minichromosome Maintenance Complex Component 7 / genetics; Phylogeny; Plant Diseases / microbiology; Poaceae / microbiology; Sequence Analysis, DNA
Sources: Crossref, ORCID
Added: January 14, 2020

2018 journal article

Cultural and Genetic Approaches to Manage Aflatoxin Contamination: Recent Insights Provide Opportunities for Improved Control

Phytopathology, 108(9), 1024–1037.

By: P. Ojiambo n, P. Battilani n, J. Cary n, B. Blum n & I. Carbone n

co-author countries: Italy 🇮🇹 United States of America 🇺🇸
MeSH headings : Aflatoxins / metabolism; Aspergillus flavus / chemistry; Aspergillus flavus / physiology; Crops, Agricultural; Disease Resistance; Food Contamination / prevention & control; Plant Diseases / immunology; Plant Diseases / microbiology; Plant Diseases / prevention & control; Plants, Genetically Modified; Zea mays / genetics; Zea mays / immunology; Zea mays / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: October 16, 2018

2018 report

Management practices for controlling mycotoxins in corn: A three-year summary

(NC State Extension Publications No. AG-852). http://content.ces.ncsu.edu/management-practices-for-controlling-mycotoxins-in-corn

By: M. Molo, R. Heiniger, L. Boerema & I. Carbone

Source: NC State University Libraries
Added: November 21, 2020

2018 journal article

Population structure and migration of the Tobacco Blue Mold Pathogen, Peronospora tabacina, into North America and Europe

Molecular Ecology, 27(3), 737–751.

By: M. Blanco-Meneses n, I. Carbone n & J. Ristaino n

co-author countries: United States of America 🇺🇸
author keywords: genetic structure; Peronospora tabacina; population genetics; tobacco
MeSH headings : Base Sequence; Europe; Geography; Likelihood Functions; Movement; North America; Peronospora / physiology; Phylogeny; Tobacco / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Balancing selection for aflatoxin in Aspergillus flavus is maintained through interference competition with, and fungivory by insects

Proceedings of the Royal Society B: Biological Sciences, 284(1869), 20172408.

By: M. Drott*, B. Lazzaro*, D. Brown*, I. Carbone n & M. Milgroom*

co-author countries: United States of America 🇺🇸
author keywords: balancing selection; aflatoxin; fungivory; interference competition; secondary metabolism; mycotoxins
MeSH headings : Aflatoxins / metabolism; Animals; Aspergillus flavus / chemistry; Aspergillus flavus / genetics; Drosophila melanogaster / growth & development; Drosophila melanogaster / physiology; Food Microbiology; Herbivory; Larva / growth & development; Larva / physiology; Selection, Genetic
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Global population structure and adaptive evolution of aflatoxin-producing fungi

Ecology and Evolution, 7(21), 9179–9191.

By: G. Moore*, R. Olarte*, B. Horn*, J. Elliott n, R. Singh n, C. O'Neal n, I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Aspergillus; balancing selection; maximum likelihood; multilocus sequence typing; principal component analysis
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Occurrence and Distribution of Mating Types of Pseudoperonospora cubensis in the United States

Phytopathology, 107(3), 313–321.

By: A. Thomas n, I. Carbone n, Y. Cohen n & P. Ojiambo n

co-author countries: Israel 🇮🇱 United States of America 🇺🇸
MeSH headings : Cucumis melo / parasitology; Cucumis sativus / parasitology; Oomycetes / genetics; Oomycetes / isolation & purification; Plant Diseases / parasitology; Reproduction
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants

Current Opinion in Plant Biology, 38, 78–83.

co-author countries: United States of America 🇺🇸
MeSH headings : Adaptation, Physiological / genetics; Adaptation, Physiological / physiology; Biological Evolution; Genome, Plant / genetics; Host-Pathogen Interactions / genetics; Host-Pathogen Interactions / physiology; Plants / metabolism; Plants / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis of Pseudoperonospora cubensis

Ecology and Evolution, 7(16), 6231–6246.

co-author countries: United States of America 🇺🇸
author keywords: coalescent analysis; cucurbits; disease resurgence; downy mildew; lineage; phylogenetic analysis
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2017 journal article

Virulence Structure Within Populations of Pseudoperonospora cubensis in the United States

PHYTOPATHOLOGY, 107(6), 777–785.

By: A. Thomas n, I. Carbone n, A. Lebeda n & P. Ojiambo n

co-author countries: Czechia 🇨🇿 United States of America 🇺🇸
MeSH headings : Cucumis sativus / parasitology; Genotype; Host Specificity; Oomycetes / pathogenicity; Phenotype; Plant Diseases / parasitology; United States; Virulence / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Sexual Reproduction in Aspergillus flavus Sclerotia: Acquisition of Novel Alleles from Soil Populations and Uniparental Mitochondrial Inheritance

PLOS ONE, 11(1).

By: B. Horn*, R. Gell n, R. Singh n, R. Sorensen* & I. Carbone n

co-author countries: United States of America 🇺🇸
MeSH headings : Alleles; Aspergillus flavus / genetics; Genes, Mitochondrial; Genetic Variation; Reproduction / genetics; Soil; Soil Microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

Bioinformatics, 33(8), btw808.

By: I. Carbone n, J. White n, J. Miadlikowska*, A. Arnold*, M. Miller*, F. Kauff*, J. U'Ren*, G. May*, F. Lutzoni*

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
MeSH headings : Ascomycota / genetics; Endophytes / physiology; Genetic Loci; Metadata; Phylogeny; Sequence Alignment / methods; Software
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale

FUNGAL GENETICS AND BIOLOGY, 81, 25–40.

By: A. Putman n, L. Tredway n & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Sclerotinia homoeocarpa; Mating type; Sexual reproduction; Turfgrass; Asexual; Rutstroemiaceae
MeSH headings : Ascomycota / classification; Ascomycota / genetics; Ascomycota / isolation & purification; California; DNA Primers / genetics; DNA, Fungal / chemistry; DNA, Fungal / genetics; Genes, Fungal; Genes, Mating Type, Fungal; Genotype; Italy; Molecular Sequence Data; Multiplex Polymerase Chain Reaction / methods; Sequence Analysis, DNA; United Kingdom
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Enhanced diversity and aflatoxigenicity in interspecific hybrids ofAspergillus flavusandAspergillus parasiticus

Molecular Ecology, 24(8), 1889–1909.

By: R. Olarte n, C. Worthington n, B. Horn*, G. Moore*, R. Singh n, J. Monacell n, J. Dorner*, E. Stone n, D. Xie n, I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: allopolyploid; array comparative genome hybridization; flow cytometry; meiosis; population
MeSH headings : Aflatoxins / biosynthesis; Aspergillus / classification; Aspergillus / genetics; Aspergillus flavus / genetics; Comparative Genomic Hybridization; Genes, Mating Type, Fungal; Genotype; Genotyping Techniques; Hybridization, Genetic; Molecular Sequence Data; Phenotype; Phylogeny; Sequence Analysis, DNA; Sterigmatocystin / analogs & derivatives; Sterigmatocystin / biosynthesis
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Genetic structure and post-glacial expansion ofCornus floridaL. (Cornaceae): integrative evidence from phylogeography, population demographic history, and species distribution modeling

Journal of Systematics and Evolution, 54(2), 136–151.

By: A. Call n, Y. Sun n, Y. Yu n, P. Pearman*, D. Thomas*, R. Trigiano*, I. Carbone n, Q. Xiang n

co-author countries: China 🇨🇳 Spain 🇪🇸 United States of America 🇺🇸
author keywords: Bayesian skyride plot; Cornus florida; LGM; phylogeography; plastid DNA; post-glacial range expansion; species distribution modeling
Sources: Crossref, ORCID, Web Of Science
Added: August 6, 2018

2015 journal article

Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species

Current Genetics, 61(4), 567–577.

By: E. Lassiter n, C. Russ*, C. Nusbaum*, Q. Zeng*, A. Saville n, R. Olarte n, I. Carbone n, C. Hu n ...

co-author countries: Denmark 🇩🇰 United States of America 🇺🇸

Contributors: E. Lassiter n, C. Russ*, C. Nusbaum*, Q. Zeng*, A. Saville n, R. Olarte n, I. Carbone n, C. Hu n ...

author keywords: Phytophthora 1 c clade; Mitochondria; Late blight; Phylogenetics
MeSH headings : Biological Evolution; Chimera / microbiology; Colombia; DNA, Mitochondrial / genetics; Ecuador; Genome, Mitochondrial; Solanum lycopersicum / microbiology; Mitochondria / genetics; Peru; Phylogeny; Phylogeography; Phytophthora / classification; Phytophthora / genetics; Phytophthora infestans / classification; Phytophthora infestans / genetics; Plant Diseases / microbiology; Sequence Analysis, DNA; Solanum tuberosum / microbiology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Nuclear heterogeneity in conidial populations of Aspergillus flavus

FUNGAL GENETICS AND BIOLOGY, 84, 62–72.

By: F. Runa n, I. Carbone n, D. Bhatnagar* & G. Payne n

co-author countries: United States of America 🇺🇸
author keywords: Heterokaryosis; Ploidy; Heterokaryon; Diploid; A. flavus; Fluorescence microscopy; Flow cytometry
MeSH headings : Aspergillus flavus / genetics; Cell Fusion / methods; Diploidy; Flow Cytometry; Genetic Variation; Genotype; Green Fluorescent Proteins / chemistry; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Luminescent Proteins / chemistry; Luminescent Proteins / genetics; Luminescent Proteins / metabolism; Microscopy, Fluorescence; Nucleosomes; Ploidies; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Spores, Fungal / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Sexual recombination in Aspergillus tubingensis

MYCOLOGIA, 107(2), 307–312.

By: R. Olarte n, B. Horn*, R. Singh* & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Aspergillus niger; mating type; multilocus sequence typing; sexual reproduction
MeSH headings : Aspergillus / genetics; Aspergillus / physiology; Fungal Proteins / genetics; Fungal Proteins / metabolism; Genes, Mating Type, Fungal; Haplotypes; Recombination, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 report

The Use of Management Practices to Reduce Mycotoxin Contamination in Corn

(NC State Extension Publication No. AG-807). Raleigh, NC: North Carolina Cooperative Extension Service.

By: M. Meyers, R. Heiniger, L. Boerema & I. Carbone

Source: NC State University Libraries
Added: January 17, 2021

2014 review

Challenges in analysis and interpretation of microsatellite data for population genetic studies

[Review of ]. ECOLOGY AND EVOLUTION, 4(22), 4399–4428.

By: A. Putman n & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Data analysis; microsatellite; population genetics; population structure
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

GENETIC VARIATION IN HORIZONTALLY TRANSMITTED FUNGAL ENDOPHYTES OF PINE NEEDLES REVEALS POPULATION STRUCTURE IN CRYPTIC SPECIES

AMERICAN JOURNAL OF BOTANY, 101(8), 1362–1374.

By: R. Oono n, F. Lutzoni*, A. Arnold*, L. Kaye*, . Jana M. U'Ren*, G. May*, I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: diversity; foliar fungal endophyte; Lophodermium; Pinus; Rhytismataceae; speciation
MeSH headings : Ascomycota / genetics; Biodiversity; Biological Evolution; Endophytes / genetics; Genetic Variation; Genetics, Population; North Carolina; Phylogeny; Pinus / microbiology; Plant Leaves / microbiology; Symbiosis; Virginia
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics

Bioinformatics, 30(10), 1488–1490.

By: J. Monacell n & I. Carbone n

co-author countries: United States of America 🇺🇸
MeSH headings : Automation, Laboratory; Genetics, Population; Genomics / methods; Internet; Phylogeny; Software
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2014 review

Mycotoxins that affect the North American agri-food sector: state of the art and directions for the future

[Review of ]. WORLD MYCOTOXIN JOURNAL, 7(1), 63–82.

By: J. Miller*, A. Schaafsma*, D. Bhatnagar*, G. Bondy*, I. Carbone n, L. Harris*, G. Harrison*, G. Munkvold* ...

co-author countries: Canada 🇨🇦 France 🇫🇷 United States of America 🇺🇸
author keywords: mycotoxins; USA; Canada; toxicology; mycology; crop production
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Population structure and diversity of an invasive pine needle pathogen reflects anthropogenic activity

ECOLOGY AND EVOLUTION, 4(18), 3642–3661.

By: I. Barnes*, M. Wingfield*, I. Carbone n, T. Kirisits* & B. Wingfield

co-author countries: Austria 🇦🇹 United States of America 🇺🇸 South Africa 🇿🇦
author keywords: Climate change; fungi; gene flow; mating type genes; Mycosphaerella pini; population genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Sexual Reproduction in Aspergillus flavus Sclerotia Naturally Produced in Corn

PHYTOPATHOLOGY, 104(1), 75–85.

By: B. Horn, R. Sorensen, M. Lamb, V. Sobolev, R. Olarte*, C. Worthington, I. Carbone*

author keywords: Aspergillus parasiticus; biological control; Eupenicillium ochrosalmoneum
MeSH headings : Aflatoxins / analysis; Aflatoxins / metabolism; Agricultural Irrigation; Aspergillus flavus / chemistry; Aspergillus flavus / cytology; Aspergillus flavus / genetics; Aspergillus flavus / physiology; Droughts; Plant Diseases / microbiology; Rain; Reproduction; Spores, Fungal / chemistry; Spores, Fungal / cytology; Spores, Fungal / genetics; Spores, Fungal / physiology; Temperature; Zea mays / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi

MOLECULAR ECOLOGY RESOURCES, 14(5), 1032–1048.

By: . Jana M. U'Ren*, J. Riddle*, J. Monacell n, I. Carbone n, J. Miadlikowska* & A. Arnold*

co-author countries: United States of America 🇺🇸
author keywords: 454 amplicon pyrosequencing; diversity; ITSrDNA; lichen; moss; mycobiont; Peltigera; Pinus
MeSH headings : Biota; DNA Primers / genetics; Diagnostic Errors; Endophytes / classification; Endophytes / genetics; Endophytes / isolation & purification; Fungi / classification; Fungi / genetics; Fungi / isolation & purification; Molecular Sequence Data; Plants / microbiology; Preservation, Biological / methods; Sequence Analysis, DNA / methods; Specimen Handling / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

A calibrated human Y-chromosomal phylogeny based on resequencing

GENOME RESEARCH, 23(2), 388–395.

co-author countries: China 🇨🇳 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
MeSH headings : Chromosomes, Human, Y; Emigration and Immigration; Ethnicity / genetics; Genetics, Population; Haplotypes; Humans; Male; Phylogeny; Polymorphism, Single Nucleotide
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Development and characterization of 14 microsatellite loci for the plant pathogenic fungus Sclerotinia homoeocarpa

Molecular Ecology Resources, 13(5), 966–968.

By: A. Putman, I. Carbone & L. Tredway

Source: NC State University Libraries
Added: January 17, 2021

2013 journal article

Fragmentation of an aflatoxin-like gene cluster in a forest pathogen

NEW PHYTOLOGIST, 198(2), 525–535.

By: R. Bradshaw*, J. Slot*, G. Moore*, P. Chettri*, P. Wit*, K. Ehrlich*, A. Ganley*, M. Olson* ...

co-author countries: Netherlands 🇳🇱 New Zealand 🇳🇿 United States of America 🇺🇸
author keywords: adaptive evolution; aflatoxin; Dothistroma septosporum; dothistromin; forest pathogen; gene cluster; gene organization; secondary metabolite
MeSH headings : Aflatoxins / chemistry; Aflatoxins / genetics; Anthraquinones / metabolism; Ascomycota / genetics; Biosynthetic Pathways / genetics; Evolution, Molecular; Genes, Fungal / genetics; Genetic Loci / genetics; Linkage Disequilibrium / genetics; Models, Genetic; Multigene Family / genetics; Phylogeny; Recombination, Genetic / genetics; Synteny / genetics; Trees / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Permanent genetic resources added to molecular ecology resources database 1 April 2013-31 May 2013

Molecular Ecology Resources, 13(5), 966–968.

By: C. Agostini, R. Albaladejo, A. Aparicio, W. Arthofer, P. Berrebi, P. Boag, I. Carbone, G. Conroy ...

Source: NC State University Libraries
Added: August 6, 2018

2013 journal article

Sexual reproduction in Aspergillus tubingensis from section Nigri

Mycologia, 105(5), 1153–1163.

By: B. Horn*, R. Olarte n, S. Peterson* & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: ascospores; Aspergillus flavus; A. niger; heterothallism; mating type; sclerotium; stroma
MeSH headings : Aspergillus / classification; Aspergillus / cytology; Aspergillus / genetics; Aspergillus / physiology; Base Sequence; DNA, Fungal / chemistry; DNA, Fungal / genetics; Genes, Mating Type, Fungal / genetics; Molecular Sequence Data; North Carolina; Phylogeny; Reproduction; Sequence Analysis, DNA; Soil Microbiology; Spores, Fungal
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2013 journal article

Sexuality Generates Diversity in the Aflatoxin Gene Cluster: Evidence on a Global Scale

PLoS Pathogens, 9(8), e1003574.

By: G. Moore*, J. Elliott n, R. Singh n, B. Horn*, J. Dorner*, E. Stone n, S. Chulze*, G. Barros* ...

co-author countries: Argentina 🇦🇷 Australia 🇦🇺 Benin 🇧🇯 India 🇮🇳 United States of America 🇺🇸

Ed(s): B. McDonald

MeSH headings : Aflatoxins / biosynthesis; Aflatoxins / genetics; Aspergillus flavus / genetics; Aspergillus flavus / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Genes, Fungal / physiology; Multigene Family / physiology; Repressor Proteins / genetics; Repressor Proteins / metabolism; Species Specificity
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis

MOLECULAR ECOLOGY, 21(6), 1453–1476.

By: R. Olarte n, B. Horn*, J. Dorner*, J. Monacell n, R. Singh n, E. Stone n, I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: array comparative genome hybridization; biological control; heritability; multilocus sequence typing; non-Mendelian segregation; vegetative compatibility group
MeSH headings : Aflatoxins / biosynthesis; Aspergillus flavus / genetics; Aspergillus flavus / metabolism; Comparative Genomic Hybridization; Fungal Proteins / genetics; Genes, Mating Type, Fungal / genetics; Genetic Variation; Karyotyping; Molecular Sequence Data; Multigene Family; Recombination, Genetic; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 report

Renaming the dollar spot fungus

Golf Course Management Current Research.

By: L. Beirn, B. Clarke, L. Tredway, I. Carbone, M. Boehm, A. Orshinsky, J. Crouch

Source: NC State University Libraries
Added: January 17, 2021

2011 journal article

A multidimensional study of endophytic fungal diversity

IMA Fungus, 2(1), 2–4.

By: A. Arnold, I. Carbone, F. Lutzoni & G. May

Source: NC State University Libraries
Added: January 17, 2021

2011 journal article

Climate change impacts on mycotoxin risks in US maize

World Mycotoxin Journal, 4(1), 79–93.

By: F. Wu*, D. Bhatnagar*, T. Bui-Klimke*, I. Carbone n, R. Hellmich*, G. Munkvold*, P. Paul, G. Payne n, E. Takle*

co-author countries: United States of America 🇺🇸
author keywords: climate change; maize; aflatoxins; fumonisins; deoxynivalenol
Sources: Crossref, ORCID, Web Of Science
Added: August 6, 2018

2011 journal article

Evidence that the Human Pathogenic Fungus Cryptococcus neoformans var. grubii May Have Evolved in Africa

PLoS ONE, 6(5), e19688.

By: A. Litvintseva*, I. Carbone n, J. Rossouw*, R. Thakur*, N. Govender & T. Mitchell*

co-author countries: Botswana 🇧🇼 United States of America 🇺🇸 South Africa 🇿🇦

Ed(s): K. Nielsen

MeSH headings : Cryptococcosis / microbiology; Cryptococcus neoformans / classification; Cryptococcus neoformans / genetics; Cryptococcus neoformans / pathogenicity; DNA, Fungal / genetics; Evolution, Molecular; Haplotypes; Humans; Molecular Sequence Data; Phylogeny; Recombination, Genetic
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2011 journal article

Phylogenetic history of Phytophthora cryptogea and P. drechsleri Isolates from floriculture crops in North Carolina greenhouses

Phytopathology, 101(11), 1373–1384.

By: H. Olson, I. Carbone & D. Benson

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

Population Genetic Analysis of Tomato spotted wilt virus on Peanut in North Carolina and Virginia

PHYTOPATHOLOGY, 101(1), 147–153.

By: A. Kaye n, J. Moyer*, E. Parks*, I. Carbone* & M. Cubeta*

co-author countries: United States of America 🇺🇸
author keywords: population diversity
MeSH headings : Arachis / virology; Genetic Variation; Haplotypes; North Carolina; Plant Diseases / virology; RNA, Viral; Tospovirus / genetics; Virginia
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Selection of Aspergillus flavus isolates for biological control of aflatoxins in corn

TOXIN REVIEWS, 30(2-3), 59–70.

By: H. Abbas, M. Weaver, B. Horn, I. Carbone*, J. Monacell* & W. Shier

author keywords: Biological control; mycotoxins; aflatoxins; cyclopiazonic acid; corn; Aspergillus flavus; competitive exclusion
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Sexual reproduction in aflatoxin-producing Aspergillus nomius

Mycologia, 103(1), 174–183.

By: B. Horn*, G. Moore* & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Aflatoxin; ascospores; Aspergillus flavus; Aspergillus parasiticus; heterothallism; Petromyces
MeSH headings : Aflatoxins / biosynthesis; Aflatoxins / genetics; Aspergillus / genetics; Aspergillus / metabolism; Aspergillus / physiology; Aspergillus / ultrastructure; Crosses, Genetic; Genes, Mating Type, Fungal; Microscopy, Electron, Scanning; Spores, Fungal / genetics; Spores, Fungal / metabolism; Spores, Fungal / ultrastructure
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2011 chapter

The Population Dynamics of Aflatoxigenic Aspergilli

In R. G. Guevara-González (Ed.), Aflatoxins - Biochemistry and Molecular Biology.

By: G. Moore, S. Beltz, I. Carbone*, K. Ehrlich & B. Horn

Ed(s): R. Guevara-González

Sources: Crossref, ORCID
Added: February 12, 2020

2010 conference paper

Population genetic analysis reveals ancient evolution and recent migration of P. ramorum

[Tech. Rep. PSW-GTR-229.]. In S. J. Frankel, J. T. Kliejunas, & K. M. Palmieri (Eds.), Proceedings of the Sudden Oak Death Fourth Science Symposium (pp. 116–118).

By: E. Goss, M. Larsen, I. Carbone, D. Givens, G. Chastagner, N. Grünwald, S. Frankel, J. Kliejunas, K. Palmieri

Ed(s): S. Frankel, J. Kliejunas & K. Palmieri

Sources: Crossref, ORCID
Added: February 6, 2021

2009 journal article

Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum

MOLECULAR ECOLOGY, 18(6), 1161–1174.

By: E. Goss*, I. Carbone n & N. Grunwald*

co-author countries: United States of America 🇺🇸
author keywords: coalescent; emerging disease; oomycete; plant disease; recombination; RXLR-class effector
MeSH headings : Amino Acid Sequence; Cell Nucleus / genetics; DNA, Plant / genetics; Europe; Evolution, Molecular; Genes, Fungal; Geography; Likelihood Functions; Molecular Sequence Data; North America; Phylogeny; Phytophthora / classification; Phytophthora / genetics; Polymorphism, Genetic; Quercus / microbiology; Recombination, Genetic; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Molecular Diversity and Evolutionary Processes of Alternaria solani in Brazil Inferred Using Genealogical and Coalescent Approaches

PHYTOPATHOLOGY, 99(6), 765–774.

By: V. Lourenco, A. Moya, F. Gonzalez-Candelas, I. Carbone*, L. Maffia & E. Mizubuti

author keywords: molecular epidemiology; population genetics; variability
MeSH headings : Alternaria / genetics; Alternaria / pathogenicity; Brazil / epidemiology; DNA, Fungal / genetics; DNA, Intergenic / genetics; DNA, Ribosomal / genetics; Evolution, Molecular; Genetic Variation; Geography; Haplotypes / genetics; Solanum lycopersicum / microbiology; Mycoses / genetics; Plant Diseases / microbiology; Solanum tuberosum / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Population Genetic Analysis of an Eastern US Wheat Powdery Mildew Population Reveals Geographic Subdivision and Recent Common Ancestry with UK and Israeli Populations

PHYTOPATHOLOGY, 99(7), 840–849.

By: R. Parks n, I. Carbone*, J. Murphy & C. Cowger*

co-author countries: United States of America 🇺🇸
MeSH headings : Analysis of Variance; Ascomycota / classification; Ascomycota / genetics; Ascomycota / isolation & purification; Genetic Variation; Genetics, Population; Geography; Haplotypes; Israel; Phylogeny; Plant Diseases / microbiology; Plant Leaves / microbiology; Triticum / microbiology; United Kingdom; United States
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Recombination and lineage-specific gene loss in the aflatoxin gene cluster of Aspergillus flavus

MOLECULAR ECOLOGY, 18(23), 4870–4887.

By: G. Moore n, R. Singh n, B. Horn* & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: ancestral recombination graph; balancing selection; coalescent; linkage disequilibrium
MeSH headings : Aflatoxins / genetics; Aspergillus flavus / genetics; Base Composition; DNA, Fungal / genetics; Evolution, Molecular; Genetic Variation; Genetics, Population; Genome, Fungal; Linkage Disequilibrium; Multigene Family; Recombination, Genetic; Selection, Genetic; Sequence Alignment; Sequence Analysis, DNA; Telomere / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus

FUNGAL GENETICS AND BIOLOGY, 46(2), 169–175.

By: B. Horn*, J. Ramirez-Prado n & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Aflatoxin; Aspergillus flavus; Aspergillus parasiticus; Biological control; Genetic recombination; Heterothallism; Petromyces; Sexual reproduction; Vegetative compatibility
MeSH headings : Aflatoxins / biosynthesis; Aspergillus / genetics; Aspergillus / physiology; Chromosomes, Fungal / genetics; Genes, Mating Type, Fungal; Genetic Variation; Recombination, Genetic; Spores, Fungal / genetics; Spores, Fungal / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Sexual reproduction in Aspergillus flavus

MYCOLOGIA, 101(3), 423–429.

By: B. Horn*, G. Moore* & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: aflatoxin; Aspergillus alliaceus; Aspergillus parasiticus; heterothallism; Petromyces alliaceus; Petromyces flavus; Petromyces parasitucus; Trichocomaceae
MeSH headings : Aspergillus flavus / classification; Aspergillus flavus / cytology; Aspergillus flavus / physiology; Crosses, Genetic; Eurotiales / classification; Eurotiales / cytology; Eurotiales / physiology; Reproduction / physiology; Sex; Spores, Fungal / cytology; Spores, Fungal / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

The sexual state of Aspergillus parasiticus

MYCOLOGIA, 101(2), 275–280.

By: B. Horn*, J. Ramirez-Prado & I. Carbone n

co-author countries: United States of America 🇺🇸
author keywords: Aspergillus alliaceus; heterothallism; Petromyces alliaceus; Petromyces parasiticus; sexual reproduction; Trichocomaceae
MeSH headings : Aspergillus / cytology; Aspergillus / physiology; Reproduction / physiology; Species Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens

BMC GENOMICS, 9.

By: A. Powell*, G. Conant*, D. Brown n, I. Carbone n & R. Dean n

co-author countries: Ireland 🇮🇪 United States of America 🇺🇸

Contributors: A. Powell*, G. Conant*, D. Brown n, I. Carbone n & R. Dean n

MeSH headings : Computational Biology; Evolution, Molecular; Fungi / genetics; Fungi / pathogenicity; Gene Duplication; Genomics; Multigene Family / genetics; Sequence Homology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Characterization and population analysis of the mating-type genes in Aspergillus flavus and Aspergillus parasiticus

FUNGAL GENETICS AND BIOLOGY, 45(9), 1292–1299.

co-author countries: United States of America 🇺🇸
author keywords: heterothallic; homothallic; vegetative compatibility; haplotype; fungi
MeSH headings : Amino Acid Sequence; Arachis / microbiology; Aspergillus / classification; Aspergillus / genetics; Aspergillus / isolation & purification; Aspergillus / metabolism; Genes, Mating Type, Fungal; Molecular Sequence Data; Mycological Typing Techniques; Polymerase Chain Reaction; Sequence Alignment; Soil Microbiology; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Chloroplast DNA phylogeography in long-lived Huon pine, a Tasmanian rain forest conifer

CANADIAN JOURNAL OF FOREST RESEARCH, 38(6), 1576–1589.

By: C. Clark n & I. Carbone n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

GT-Miner: a graph-theoretic data miner, viewer, and model processor

Bioinformation, 3(5), 235–237.

By: D. Brown n, A. Powell, I. Carbone* & R. Dean

co-author countries: United States of America 🇺🇸
author keywords: graph theory; data mining; visualization; information visualization
Sources: Crossref, ORCID
Added: January 28, 2020

2008 journal article

Phylogenetic relatedness of the M2 double-stranded RNA in Rhizoctonia fungi

MYCOLOGIA, 100(4), 555–564.

By: N. Charlton n, I. Carbone n, S. Tavantzis* & M. Cubeta n

co-author countries: United States of America 🇺🇸
author keywords: anastomosis groups; binucleate Rhizoctonia; Ceratobasidium; mycoviruses; Thanatephorus
MeSH headings : Haplotypes; Molecular Sequence Data; Mycological Typing Techniques; Phylogeny; Plant Diseases / microbiology; Polymerase Chain Reaction; RNA, Double-Stranded / genetics; RNA, Viral / genetics; Rhizoctonia / classification; Rhizoctonia / genetics; Rhizoctonia / isolation & purification; Rhizoctonia / virology; Soil Microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Virulence structure of the Eastern US wheat powdery mildew population

PLANT DISEASE, 92(7), 1074–1082.

By: R. Parks n, I. Carbone*, J. Murphy n, D. Marshall n & C. Cowger n

co-author countries: United States of America 🇺🇸
author keywords: Blumeria graminis f. sp tritici; Triticum aestivum
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

An Andean origin of Phytophthora infestans inferred from mitochondrial and nuclear gene genealogies

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 104(9), 3306–3311.

By: L. Gomez-Alpizar*, I. Carbone n & J. Ristaino*

co-author countries: United States of America 🇺🇸

Contributors: L. Gómez-Alpizar*, I. Carbone n & J. Ristaino*

author keywords: late blight; oomycetes; phylogeography; Solanum tuberosum; stamenopiles
MeSH headings : Base Sequence; DNA, Mitochondrial / genetics; Demography; Evolution, Molecular; Genes, ras / genetics; Genetic Variation; Haplotypes / genetics; Molecular Sequence Data; Phylogeny; Phytophthora / genetics; Sequence Analysis, DNA; Solanum tuberosum / microbiology; South America; Tubulin / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster

BMC EVOLUTIONARY BIOLOGY, 7.

By: I. Carbone n, J. Ramirez-Prado n, J. Jakobek n & B. Horn*

co-author countries: United States of America 🇺🇸
MeSH headings : Acclimatization / genetics; Aflatoxins / genetics; Aspergillus / genetics; Gene Duplication; Genes, Fungal; Genome, Fungal; Models, Biological; Multigene Family; Phylogeny; Sequence Homology, Amino Acid; Species Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Impact of population structure on genetic diversity of a potential vaccine target in the canine hookworm (Ancylostoma caninum)

JOURNAL OF PARASITOLOGY, 93(4), 796–805.

By: J. Moser n, I. Carbone n, P. Arasu n & G. Gibson n

co-author countries: United States of America 🇺🇸
MeSH headings : Ancylostoma / genetics; Ancylostoma / growth & development; Ancylostoma / immunology; Ancylostomiasis / parasitology; Ancylostomiasis / veterinary; Animals; DNA, Helminth / chemistry; Dog Diseases / parasitology; Dogs; Electron Transport Complex IV / genetics; Electron Transport Complex IV / immunology; Female; Genetic Variation; Haplotypes; Helminth Proteins / genetics; Helminth Proteins / immunology; Male; Maryland; North Carolina; Population Dynamics; Queensland; Vaccines / genetics; Vaccines / immunology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

New populations of Sclerotinia sclerotiorum from lettuce in California and peas and lentils in Washington

PHYTOPATHOLOGY, 97(4), 470–483.

By: G. Malvarez, I. Carbone*, N. Grunwald, K. Subbarao, M. Schafer & L. Kohn

author keywords: migration; MDIV; mating type; multilocus haplotype; MCG; population genetics; phylogeny; vegetative compatibility
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus

MOLECULAR ECOLOGY, 16(20), 4401–4417.

By: I. Carbone n, J. Jakobek n, J. Ramirez-Prado n & B. Horn*

co-author countries: United States of America 🇺🇸
author keywords: coalescent; compatibility; linkage disequilibrium; recombination blocks
MeSH headings : Adaptation, Physiological / genetics; Aflatoxins / genetics; Aspergillus / classification; Aspergillus / genetics; Base Sequence; DNA, Fungal / chemistry; DNA, Fungal / genetics; Evolution, Molecular; Genetic Variation; Models, Genetic; Molecular Sequence Data; Multigene Family / genetics; Phylogeny; Recombination, Genetic; Selection, Genetic; Sequence Analysis, DNA; Sequence Homology, Nucleic Acid; Time Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

The evolutionary history of Cytochrome P450 genes in four filamentous Ascomycetes

BMC EVOLUTIONARY BIOLOGY, 7.

By: J. Deng n, I. Carbone n & R. Dean n

co-author countries: United States of America 🇺🇸
MeSH headings : Amino Acid Motifs; Amino Acid Sequence; Ascomycota / enzymology; Ascomycota / genetics; Aspergillus nidulans / enzymology; Aspergillus nidulans / genetics; Conserved Sequence; Cytochrome P-450 Enzyme System / genetics; Evolution, Molecular; Exons; Fusarium / enzymology; Fusarium / genetics; Gene Duplication; Genes, Fungal; Introns; Magnaporthe / enzymology; Magnaporthe / genetics; Multigene Family; Neurospora crassa / enzymology; Neurospora crassa / genetics; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

SNAP: Combine and Map modules for multilocus population genetic analysis

Bioinformatics, 22(11), 1399–1401.

By: D. Aylor, E. Price & I. Carbone

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2005 journal article

Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci

JOURNAL OF BACTERIOLOGY, 187(16), 5700–5708.

By: L. Charles n, I. Carbone n, K. Davies*, D. Bird n, M. Burke n, B. Kerry*, C. Opperman n

co-author countries: United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸

Contributors: L. Charles n, I. Carbone n, K. Davies*, D. Bird n, M. Burke n, B. Kerry*, C. Opperman n

MeSH headings : Animals; Bacillus / genetics; Bacterial Proteins / genetics; Bayes Theorem; Models, Genetic; Phylogeny; Tylenchoidea / microbiology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

SNAP: workbench management tool for evolutionary population genetic analysis

BIOINFORMATICS, 21(3), 402–404.

By: E. Price n & I. Carbone n

co-author countries: United States of America 🇺🇸
MeSH headings : Computer Simulation; DNA Mutational Analysis / methods; Evolution, Molecular; Genetic Variation / genetics; Genetics, Population; Models, Genetic; Models, Statistical; Sequence Alignment / methods; Sequence Analysis, DNA / methods; Software; Systems Integration
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

The genome sequence of the rice blast fungus Magnaporthe grisea

NATURE, 434(7036), 980–986.

By: R. Dean n, N. Talbot*, D. Ebbole*, M. Farman*, T. Mitchell n, M. Orbach*, M. Thon*, R. Kulkarni n ...

co-author countries: France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 Korea (Republic of) 🇰🇷 United States of America 🇺🇸
MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Genes, Fungal / genetics; Genome, Fungal; Guanosine Diphosphate / metabolism; Guanosine Triphosphate / metabolism; Magnaporthe / classification; Magnaporthe / genetics; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Oryza / microbiology; Plant Diseases / microbiology; Point Mutation / genetics; Proteome / genetics; Proteome / metabolism; Receptors, G-Protein-Coupled / genetics; Repetitive Sequences, Nucleic Acid / genetics; Saccharomyces cerevisiae / metabolism; Signal Transduction; Virulence / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 chapter

Inferring Process from Pattern in Fungal Population Genetics

In Fungal Genomics (pp. 29–58).

By: I. Carbone n & L. Kohn*

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
Sources: Crossref, ORCID
Added: January 28, 2020

2004 journal article

Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent

GENETICS, 166(4), 1611–1629.

By: I. Carbone n, Y. Liu*, B. Hillman* & M. Milgroom*

co-author countries: United States of America 🇺🇸
MeSH headings : Ascomycota / virology; Base Sequence; DNA, Complementary / genetics; Disease Transmission, Infectious; Evolution, Molecular; Genetics, Population; Geography; Haplotypes / genetics; Italy; Models, Genetic; Molecular Sequence Data; Phylogeny; RNA Viruses / genetics; RNA Viruses / physiology; Recombination, Genetic / genetics; Reproduction / genetics; Sequence Alignment; Sequence Analysis, DNA
Sources: Web Of Science, ORCID
Added: August 6, 2018

2002 journal article

Phylogeography and Genotype-Symptom Associations in Early and Late Season Infections of Canola by Sclerotinia sclerotiorum

Phytopathology, 92(7), 785–793.

By: D. Phillips, I. Carbone*, S. Gold & L. Kohn

author keywords: cladistic inference; genome size; multilocus sequence typing; nested haplotype networks
Sources: Crossref, ORCID
Added: January 28, 2020

2001 journal article

A microbial population-species interface: nested cladistic and coalescent inference with multilocus data

Molecular Ecology, 10(4), 947–964.

By: I. Carbone* & L. Kohn*

co-author countries: Canada 🇨🇦
author keywords: fungi; migration; recombination; Sclerotinia; site compatibility; speciation
MeSH headings : Ascomycota / classification; Ascomycota / genetics; Ascomycota / physiology; Computer Simulation; Ecosystem; Evolution, Molecular; Genetic Variation; Genetics, Population; Haplotypes; Likelihood Functions; Mutation; Phylogeny; Recombination, Genetic; Species Specificity
Sources: Crossref, ORCID
Added: January 28, 2020

2001 journal article

Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation

Molecular Ecology, 10(10), 2409–2422.

By: I. Carbone* & L. Kohn*

co-author countries: Canada 🇨🇦
author keywords: fungi; genome size; IGS; microsatellite expansion; recombination block; Sclerotinia
MeSH headings : Ascomycota / classification; Ascomycota / genetics; DNA Fingerprinting; Genetic Variation; Haplotypes / genetics; Microsatellite Repeats; Norway; Phylogeny; Ranunculaceae / microbiology
Sources: Crossref, ORCID
Added: January 28, 2020

1999 journal article

A Method for Designing Primer Sets for Speciation Studies in Filamentous Ascomycetes

Mycologia, 91(3), 553.

By: I. Carbone* & L. Kohn*

co-author countries: Canada 🇨🇦
author keywords: Aspergillus nidulans; intergenic spacer; Neurospora crassa; Sclerotinia sclerotiorum; Trichophyton rubrum
Sources: Crossref, ORCID
Added: January 28, 2020

1999 journal article

Patterns of Descent in Clonal Lineages and Their Multilocus Fingerprints Are Resolved with Combined Gene Genealogies

Evolution, 53(1), 11.

By: I. Carbone*, J. Anderson & L. Kohn

Sources: Crossref, ORCID
Added: January 28, 2020

1995 journal article

A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum

Current Genetics, 27(2), 166–176.

By: I. Carbone*, J. Anderson* & L. Kohn*

co-author countries: Canada 🇨🇦
author keywords: ASEXUAL REPRODUCTION; CLONALITY; GROUP-I INTRON; MITOCHONDRIAL SMALL SUBUNIT RIBOSOMAL RNA GENE; SCLEROTINIA SCLEROTIORUM
MeSH headings : Amino Acid Sequence; Ascomycota / genetics; Base Sequence; Biological Evolution; Blotting, Southern; Conserved Sequence; DNA, Mitochondrial / genetics; DNA, Ribosomal / chemistry; DNA, Ribosomal / genetics; Fungi / genetics; Introns / genetics; Models, Biological; Molecular Sequence Data; Polymerase Chain Reaction; RNA, Ribosomal / chemistry; RNA, Ribosomal / genetics; Sequence Alignment; Sequence Analysis, DNA
Sources: Crossref, ORCID
Added: January 28, 2020

1993 journal article

Ribosomal DNA Sequence Divergence within Internal Transcribed Spacer 1 of the Sclerotiniaceae

Mycologia, 85(3), 415.

By: I. Carbone* & L. Kohn*

co-author countries: Canada 🇨🇦
author keywords: ASCOMYCETES; DISCOMYCETES; INTERNAL TRANSCRIBED SPACER; TAXONOMY
Sources: Crossref, ORCID
Added: January 28, 2020

1991 journal article

Mycelial Incompatibility and Molecular Markers Identify Genetic Variability in Field Populations of Sclerotinia sclerotiorum

Phytopathology, 81(4), 480–485.

By: L. Kohn, E. Stasovski, I. Carbone, J. Royer & J. Anderson

author keywords: DNA FINGERPRINTING; OILSEED RAPE; SCLEROTINIA STEM ROT
Sources: Crossref, ORCID
Added: February 12, 2020

1990 journal article

Mycelial interactions in Sclerotinia sclerotiorum

Experimental Mycology, 14(3), 255–267.

By: L. Kohn*, I. Carbone* & J. Anderson*

co-author countries: Canada 🇨🇦
Sources: Crossref, ORCID
Added: January 28, 2020

journal article

A transcriptional network associated with natural variation in Drosophila aggressive behavior

Edwards, A. C., Ayroles, J. F., Stone, E. A., Carbone, M. A., Lyman, R. F., & Mackay, T. F. C. Genome Biology, 10(7).

By: A. Edwards, J. Ayroles, E. Stone, M. Carbone, R. Lyman & T. Mackay

Source: NC State University Libraries
Added: August 6, 2018