@article{oita_ibanez_lutzoni_miadlikowska_geml_lewis_hom_carbone_jana m. u'ren_arnold_2021, title={Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale}, volume={4}, ISBN={2399-3642}, DOI={10.1038/s42003-021-01826-7}, number={1}, journal={COMMUNICATIONS BIOLOGY}, author={Oita, Shuzo and Ibanez, Alicia and Lutzoni, Francois and Miadlikowska, Jolanta and Geml, Jozsef and Lewis, Louise A. and Hom, Erik F. Y. and Carbone, Ignazio and Jana M. U'Ren and Arnold, A. Elizabeth}, year={2021} }
 @article{oita_carey_kline_ibanez_yang_hom_carbone_jana m. u'ren_arnold_2021, title={Methodological Approaches Frame Insights into Endophyte Richness and Community Composition}, ISBN={1432-184X}, DOI={10.1007/s00248-020-01654-y}, journal={MICROBIAL ECOLOGY}, author={Oita, Shuzo and Carey, Jamison and Kline, Ian and Ibanez, Alicia and Yang, Nathaniel and Hom, Erik F. Y. and Carbone, Ignazio and Jana M. U'Ren and Arnold, A. Elizabeth}, year={2021} }
 @article{luis_carbone_payne_bhatnagar_cary_moore_lebar_wei_mack_ojiambo_2020, title={Characterization of morphological changes within stromata during sexual reproduction inAspergillus flavus}, ISBN={1557-2536}, DOI={10.1080/00275514.2020.1800361}, journal={MYCOLOGIA}, author={Luis, Jane Marian and Carbone, Ignazio and Payne, Gary A. and Bhatnagar, Deepak and Cary, Jeffrey W. and Moore, Geromy G. and Lebar, Matthew D. and Wei, Qijian and Mack, Brian and Ojiambo, Peter S.}, year={2020} }
 @article{molo_heiniger_boerema_carbone_2019, title={A Response to the Letter to the Editor from Ortega-Beltran and Bandyopadhyay}, volume={111}, number={5}, journal={Agronomy Journal}, author={Molo, M. and Heiniger, R. and Boerema, L. and Carbone, I.}, year={2019}, month={Sep}, pages={2629–2631} }
 @article{lewis_carbone_luis_payne_bowen_hagan_kemerait_heiniger_ojiambo_2019, title={Biocontrol Strains Differentially Shift the Genetic Structure of Indigenous Soil Populations of Aspergillus flavus}, volume={10}, ISBN={1664-302X}, ISSN={1664-302X}, url={http://dx.doi.org/10.3389/fmicb.2019.01738}, DOI={10.3389/fmicb.2019.01738}, journal={Frontiers in Microbiology}, publisher={Frontiers Media SA}, author={Lewis, Mary H. and Carbone, Ignazio and Luis, Jane M. and Payne, Gary A. and Bowen, Kira L. and Hagan, Austin K. and Kemerait, Robert and Heiniger, Ron and Ojiambo, Peter S.}, year={2019}, month={Jul} }
 @article{gell_carbone_2019, title={HPLC quantitation of aflatoxin B1 from fungal mycelium culture}, volume={158}, ISBN={1872-8359}, ISSN={0167-7012}, url={http://dx.doi.org/10.1016/j.mimet.2019.01.008}, DOI={10.1016/j.mimet.2019.01.008}, journal={Journal of Microbiological Methods}, publisher={Elsevier BV}, author={Gell, Richard M. and Carbone, Ignazio}, year={2019}, month={Mar}, pages={14–17} }
 @article{u’ren_lutzoni_miadlikowska_zimmerman_carbone_may_arnold_2019, title={Host availability drives distributions of fungal endophytes in the imperilled boreal realm}, volume={3}, ISBN={2397-334X}, ISSN={2397-334X}, url={http://dx.doi.org/10.1038/s41559-019-0975-2}, DOI={10.1038/s41559-019-0975-2}, number={10}, journal={Nature Ecology & Evolution}, publisher={Springer Science and Business Media LLC}, author={U’Ren, Jana M. and Lutzoni, François and Miadlikowska, Jolanta and Zimmerman, Naupaka B. and Carbone, Ignazio and May, Georgiana and Arnold, A. Elizabeth}, year={2019}, month={Sep}, pages={1430–1437} }
 @article{koehler_larkin_rogers_carbone_cubeta_shew_2019, title={Identification and characterization of Septoria steviae as the causal agent of Septoria leaf spot disease of stevia in North Carolina}, volume={111}, ISBN={1557-2536}, ISSN={0027-5514 1557-2536}, url={http://dx.doi.org/10.1080/00275514.2019.1584503}, DOI={10.1080/00275514.2019.1584503}, number={3}, journal={Mycologia}, publisher={Informa UK Limited}, author={Koehler, Alyssa M. and Larkin, Maximo T. and Rogers, Layne W. and Carbone, Ignazio and Cubeta, Marc A. and Shew, H. David}, year={2019}, month={Apr}, pages={456–465} }
 @article{cullen_jacob_cornish_vanderschel_cotter_cubeta_carbone_gilger_2019, title={Multi-locus DNA sequence analysis, antifungal agent susceptibility, and fungal keratitis outcome in horses from Southeastern United States}, volume={14}, ISBN={1932-6203}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0214214}, DOI={10.1371/journal.pone.0214214}, number={3}, journal={PLOS ONE}, publisher={Public Library of Science (PLoS)}, author={Cullen, Megan and Jacob, Megan E. and Cornish, Vicki and VanderSchel, Ian Q. and Cotter, Henry Van T. and Cubeta, Marc A. and Carbone, Ignazio and Gilger, Brian C.}, editor={Kniemeyer, OlafEditor}, year={2019}, month={Mar}, pages={e0214214} }
 @article{carbone_white_miadlikowska_arnold_miller_magain_u'ren_lutzoni_2019, title={T-BAS Version 2.1: Tree-Based Alignment Selector Toolkit for Evolutionary Placement of DNA Sequences and Viewing Alignments and Specimen Metadata on Curated and Custom Trees}, volume={8}, ISBN={2576-098X}, ISSN={2576-098X}, url={http://dx.doi.org/10.1128/MRA.00328-19}, DOI={10.1128/MRA.00328-19}, abstractNote={ABSTRACT
The Tree-Based Alignment Selector (T-BAS) toolkit combines phylogenetic-based placement of DNA sequences with alignment and specimen metadata visualization tools in an integrative pipeline for analyzing microbial biodiversity. The release of T-BAS version 2.1 makes available reference phylogenies, supports multilocus sequence placements and permits uploading and downloading trees, alignments, and specimen metadata.}, number={29}, journal={Microbiology Resource Announcements}, publisher={American Society for Microbiology}, author={Carbone, Ignazio and White, James B. and Miadlikowska, Jolanta and Arnold, A. Elizabeth and Miller, Mark A. and Magain, Nicolas and U'Ren, Jana M. and Lutzoni, François}, editor={Cuomo, Christina A.Editor}, year={2019}, month={Jul} }
 @article{molo_heiniger_boerema_carbone_2019, title={Trial Summary on the Comparison of Various Non-Aflatoxigenic Strains of Aspergillus flavus on Mycotoxin Levels and Yield in Maize}, volume={111}, ISBN={1435-0645}, DOI={10.2134/agronj2018.07.0473}, number={2}, journal={AGRONOMY JOURNAL}, author={Molo, Megan S. and Heiniger, Ron W. and Boerema, Leah and Carbone, Ignazio}, year={2019}, pages={942–946} }
 @article{salgado-salazar_beirn_ismaiel_boehm_carbone_putman_tredway_clarke_crouch_2018, title={Clarireedia: A new fungal genus comprising four pathogenic species responsible for dollar spot disease of turfgrass}, volume={122}, ISSN={1878-6146}, url={http://dx.doi.org/10.1016/J.FUNBIO.2018.04.004}, DOI={10.1016/J.FUNBIO.2018.04.004}, number={8}, journal={Fungal Biology}, publisher={Elsevier BV}, author={Salgado-Salazar, Catalina and Beirn, Lisa A. and Ismaiel, Adnan and Boehm, Michael J. and Carbone, Ignazio and Putman, Alexander I. and Tredway, Lane P. and Clarke, Bruce B. and Crouch, Jo Anne}, year={2018}, month={Aug}, pages={761–773} }
 @article{ojiambo_battilani_cary_blum_carbone_2018, title={Cultural and Genetic Approaches to Manage Aflatoxin Contamination: Recent Insights Provide Opportunities for Improved Control}, volume={108}, ISSN={0031-949X}, url={http://dx.doi.org/10.1094/PHYTO-04-18-0134-RVW}, DOI={10.1094/PHYTO-04-18-0134-RVW}, number={9}, journal={Phytopathology}, publisher={Scientific Societies}, author={Ojiambo, Peter S. and Battilani, Paola and Cary, Jeffrey W. and Blum, Burt H. and Carbone, Ignazio}, year={2018}, month={Sep}, pages={1024–1037} }
 @book{molo_heiniger_boerema_carbone_2018, place={Raleigh, NC}, title={Management practices for controlling mycotoxins in corn: A three-year summary}, url={http://content.ces.ncsu.edu/management-practices-for-controlling-mycotoxins-in-corn}, number={AG-852}, institution={North Carolina State University}, author={Molo, M. and Heiniger, R. and Boerema, L. and Carbone, I.}, year={2018} }
 @article{blanco-meneses_carbone_ristaino_2018, title={Population structure and migration of the Tobacco Blue Mold Pathogen, Peronospora tabacina, into North America and Europe}, volume={27}, ISSN={0962-1083}, url={http://dx.doi.org/10.1111/mec.14453}, DOI={10.1111/mec.14453}, number={3}, journal={Molecular Ecology}, publisher={Wiley}, author={Blanco-Meneses, Monica and Carbone, Ignazio and Ristaino, Jean B.}, year={2018}, month={Jan}, pages={737–751} }
 @article{drott_lazzaro_brown_carbone_milgroom_2017, title={Balancing selection for aflatoxin in
            Aspergillus flavus
            is maintained through interference competition with, and fungivory by insects}, volume={284}, ISSN={0962-8452 1471-2954}, url={http://dx.doi.org/10.1098/rspb.2017.2408}, DOI={10.1098/rspb.2017.2408}, number={1869}, journal={Proceedings of the Royal Society B: Biological Sciences}, publisher={The Royal Society}, author={Drott, Milton T. and Lazzaro, Brian P. and Brown, Dan L. and Carbone, Ignazio and Milgroom, Michael G.}, year={2017}, month={Dec}, pages={20172408} }
 @article{moore_olarte_horn_elliott_singh_o'neal_carbone_2017, title={Global population structure and adaptive evolution of aflatoxin-producing fungi}, volume={7}, ISSN={2045-7758}, url={http://dx.doi.org/10.1002/ece3.3464}, DOI={10.1002/ece3.3464}, number={21}, journal={Ecology and Evolution}, publisher={Wiley}, author={Moore, Geromy G. and Olarte, Rodrigo A. and Horn, Bruce W. and Elliott, Jacalyn L. and Singh, Rakhi and O'Neal, Carolyn J. and Carbone, Ignazio}, year={2017}, month={Sep}, pages={9179–9191} }
 @article{thomas_carbone_cohen_ojiambo_2017, title={Occurrence and Distribution of Mating Types of Pseudoperonospora cubensis in the United States}, volume={107}, ISSN={0031-949X}, url={http://dx.doi.org/10.1094/PHYTO-06-16-0236-R}, DOI={10.1094/phyto-06-16-0236-r}, number={3}, journal={Phytopathology}, publisher={Scientific Societies}, author={Thomas, Anna and Carbone, Ignazio and Cohen, Yigal and Ojiambo, Peter S.}, year={2017}, month={Mar}, pages={313–321} }
 @article{o’keeffe_carbone_jones_mitchell_2017, title={Plastic potential: how the phenotypes and adaptations of pathogens are influenced by microbial interactions within plants}, volume={38}, ISSN={1369-5266}, url={http://dx.doi.org/10.1016/j.pbi.2017.04.014}, DOI={10.1016/j.pbi.2017.04.014}, journal={Current Opinion in Plant Biology}, publisher={Elsevier BV}, author={O’Keeffe, Kayleigh R and Carbone, Ignazio and Jones, Corbin D and Mitchell, Charles E}, year={2017}, month={Aug}, pages={78–83} }
 @article{thomas_carbone_choe_quesada-ocampo_ojiambo_2017, title={Resurgence of cucurbit downy mildew in the United States: Insights from comparative genomic analysis of Pseudoperonospora cubensis}, volume={7}, ISSN={2045-7758}, url={http://dx.doi.org/10.1002/ece3.3194}, DOI={10.1002/ece3.3194}, number={16}, journal={Ecology and Evolution}, publisher={Wiley}, author={Thomas, Anna and Carbone, Ignazio and Choe, Kisurb and Quesada-Ocampo, Lina M. and Ojiambo, Peter S.}, year={2017}, month={Jul}, pages={6231–6246} }
 @article{thomas_carbone_lebeda_ojiambo_2017, title={Virulence structure within populations of Pseudoperonospora cubensis in the United States}, volume={107}, DOI={10.1094/phyto-07-16-0277-r}, number={6}, journal={Phytopathology}, author={Thomas, A. and Carbone, Ignazio and Lebeda, A. and Ojiambo, Peter}, year={2017}, pages={777–785} }
 @article{horn_gell_singh_sorensen_carbone_2016, title={Sexual reproduction in Aspergillus flavus sclerotia: Acquisition of novel alleles from soil populations and uniparental mitochondrial inheritance}, volume={11}, DOI={10.1371/journal.pone.0146169}, number={1}, journal={PLoS One}, author={Horn, B. W. and Gell, R. M. and Singh, R. and Sorensen, R. B. and Carbone, Ignazio}, year={2016} }
 @article{carbone_white_miadlikowska_arnold_miller_kauff_u'ren_may_lutzoni_2016, title={T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life}, volume={33}, ISSN={1367-4803 1460-2059}, url={http://dx.doi.org/10.1093/bioinformatics/btw808}, DOI={10.1093/bioinformatics/btw808}, number={8}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={Carbone, Ignazio and White, James B. and Miadlikowska, Jolanta and Arnold, A. Elizabeth and Miller, Mark A. and Kauff, Frank and U'Ren, Jana M. and May, Georgiana and Lutzoni, François}, year={2016}, month={Dec}, pages={btw808} }
 @article{putman_tredway_carbone_2015, title={Characterization and distribution of mating-type genes of the turfgrass pathogen Sclerotinia homoeocarpa on a global scale}, volume={81}, DOI={10.1016/j.fgb.2015.05.012}, journal={Fungal Genetics and Biology}, author={Putman, A. I. and Tredway, L. P. and Carbone, Ignazio}, year={2015}, pages={25–40} }
 @article{olarte_worthington_horn_moore_singh_monacell_dorner_stone_xie_carbone_2015, title={Enhanced diversity and aflatoxigenicity in interspecific hybrids of Aspergillus flavus and Aspergillus parasiticus}, volume={24}, DOI={10.1111/mec.13153}, number={8}, journal={Molecular Ecology}, author={Olarte, R. A. and Worthington, C. J. and Horn, B. W. and Moore, G. G. and Singh, R. and Monacell, J. T. and Dorner, J. W. and Stone, E. A. and Xie, D. Y. and Carbone, Ignazio}, year={2015}, pages={1889–1909} }
 @article{call_sun_yu_pearman_thomas_trigiano_carbone_xiang_2015, title={Genetic structure and post-glacial expansion ofCornus floridaL. (Cornaceae): integrative evidence from phylogeography, population demographic history, and species distribution modeling}, volume={54}, ISSN={1674-4918}, url={http://dx.doi.org/10.1111/jse.12171}, DOI={10.1111/jse.12171}, number={2}, journal={Journal of Systematics and Evolution}, publisher={Wiley}, author={Call, Ashley and Sun, Yan-Xia and Yu, Yan and Pearman, Peter B. and Thomas, David T. and Trigiano, Robert N. and Carbone, Ignazio and Xiang, Qiu-Yun Jenny}, year={2015}, month={Sep}, pages={136–151} }
 @article{lassiter_russ_nusbaum_zeng_saville_olarte_carbone_hu_seguin-orlando_samaniego_et al._2015, title={Mitochondrial genome sequences reveal evolutionary relationships of the Phytophthora 1c clade species}, volume={61}, ISSN={0172-8083 1432-0983}, url={http://dx.doi.org/10.1007/s00294-015-0480-3}, DOI={10.1007/s00294-015-0480-3}, number={4}, journal={Current Genetics}, publisher={Springer Science and Business Media LLC}, author={Lassiter, Erica S. and Russ, Carsten and Nusbaum, Chad and Zeng, Qiandong and Saville, Amanda C. and Olarte, Rodrigo A. and Carbone, Ignazio and Hu, Chia-Hui and Seguin-Orlando, Andaine and Samaniego, Jose A. and et al.}, year={2015}, month={Mar}, pages={567–577} }
 @article{runa_carbone_bhatnagar_payne_2015, title={Nuclear heterogeneity in conidial populations of Aspergillus flavus}, volume={84}, DOI={10.1016/j.fgb.2015.09.003}, journal={Fungal Genetics and Biology}, author={Runa, F. and Carbone, Ignazio and Bhatnagar, D. and Payne, G. A.}, year={2015}, pages={62–72} }
 @article{olarte_horn_singh_carbone_2015, title={Sexual recombination in Aspergillus tubingensis}, volume={107}, DOI={10.3852/14-233}, number={2}, journal={Mycologia}, author={Olarte, R. A. and Horn, B. W. and Singh, R. and Carbone, Ignazio}, year={2015}, pages={307–312} }
 @book{meyers_heiniger_boerema_carbone_2015, place={Raleigh, NC}, title={The Use of Management Practices to Reduce Mycotoxin Contamination in Corn}, number={AG-807}, institution={North Carolina Cooperative Extension Service}, author={Meyers, M. and Heiniger, R. and Boerema, L. and Carbone, I.}, year={2015} }
 @article{putman_carbone_2014, title={Challenges in analysis and interpretation of microsatellite data for population genetic studies}, volume={4}, DOI={10.1002/ece3.1305}, number={22}, journal={Ecology and Evolution}, author={Putman, A. I. and Carbone, Ignazio}, year={2014}, pages={4399–4428} }
 @article{oono_lutzoni_arnold_kaye_u'ren_may_carbone_2014, title={Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species}, volume={101}, DOI={10.3732/ajb.1400141}, number={8}, journal={American Journal of Botany}, author={Oono, R. and Lutzoni, F. and Arnold, A. E. and Kaye, L. and U'Ren, J. M. and May, G. and Carbone, Ignazio}, year={2014}, pages={1362–1374} }
 @article{monacell_carbone_2014, title={Mobyle SNAP Workbench: a web-based analysis portal for population genetics and evolutionary genomics}, volume={30}, ISSN={1460-2059 1367-4803}, url={http://dx.doi.org/10.1093/bioinformatics/btu055}, DOI={10.1093/bioinformatics/btu055}, number={10}, journal={Bioinformatics}, publisher={Oxford University Press (OUP)}, author={Monacell, James T. and Carbone, Ignazio}, year={2014}, month={Jan}, pages={1488–1490} }
 @article{miller_schaafsma_bhatnagar_bondy_carbone_harris_harrison_munkvold_oswald_pestka_et al._2014, title={Mycotoxins that affect the North American agri-food sector: state of the art and directions for the future}, volume={7}, DOI={10.3920/wmj2013.1624}, number={1}, journal={World Mycotoxin Journal}, author={Miller, J. D. and Schaafsma, A. W. and Bhatnagar, D. and Bondy, G. and Carbone, Ignazio and Harris, L. J. and Harrison, G. and Munkvold, G. P. and Oswald, I. P. and Pestka, J. J. and et al.}, year={2014}, pages={63–82} }
 @article{barnes_wingfield_carbone_kirisits_wingfield_2014, title={Population structure and diversity of an invasive pine needle pathogen reflects anthropogenic activity}, volume={4}, DOI={10.1002/ece3.1200}, number={18}, journal={Ecology and Evolution}, author={Barnes, I. and Wingfield, M. J. and Carbone, Ignazio and Kirisits, T. and Wingfield, B. D.}, year={2014}, pages={3642–3661} }
 @article{horn_sorensen_lamb_sobolev_olarte_worthington_carbone_2014, title={Sexual reproduction in Aspergillus flavus Sclerotia naturally produced in corn}, volume={104}, DOI={10.1094/phyto-05-13-0129-r}, number={1}, journal={Phytopathology}, author={Horn, B. W. and Sorensen, R. B. and Lamb, M. C. and Sobolev, V. S. and Olarte, R. A. and Worthington, C. J. and Carbone, Ignazio}, year={2014}, pages={75–85} }
 @article{u'ren_riddle_monacell_carbone_miadlikowska_arnold_2014, title={Tissue storage and primer selection influence pyrosequencing-based inferences of diversity and community composition of endolichenic and endophytic fungi}, volume={14}, DOI={10.1111/1755-0998.12252}, number={5}, journal={Molecular Ecology Resources}, author={U'Ren, J. M. and Riddle, J. M. and Monacell, J. T. and Carbone, Ignazio and Miadlikowska, J. and Arnold, A. E.}, year={2014}, pages={1032–1048} }
 @article{wei_ayub_chen_mccarthy_hou_carbone_xue_tyler-smith_2013, title={A calibrated human Y-chromosomal phylogeny based on resequencing}, volume={23}, DOI={10.1101/gr.143198.112}, number={2}, journal={Genome Research}, author={Wei, W. and Ayub, Q. and Chen, Y. and McCarthy, S. and Hou, Y. P. and Carbone, Ignazio and Xue, Y. L. and Tyler-Smith, C.}, year={2013}, pages={388–395} }
 @article{putman_carbone_tredway_2013, title={Development and characterization of 14 microsatellite loci for the plant pathogenic fungus Sclerotinia homoeocarpa}, volume={13}, number={5}, journal={Molecular Ecology Resources}, author={Putman, A.I. and Carbone, I. and Tredway, L.P.}, year={2013}, pages={966–968} }
 @article{bradshaw_slot_moore_chettri_wit_ehrlich_ganley_olson_rokas_carbone_et al._2013, title={Fragmentation of an aflatoxin-like gene cluster in a forest pathogen}, volume={198}, DOI={10.1111/nph.12161}, number={2}, journal={New Phytologist}, author={Bradshaw, R. E. and Slot, J. C. and Moore, G. G. and Chettri, P. and Wit, P. J. G. M. and Ehrlich, K. C. and Ganley, A. R. D. and Olson, M. A. and Rokas, A. and Carbone, Ignazio and et al.}, year={2013}, pages={525–535} }
 @article{agostini_albaladejo_aparicio_arthofer_berrebi_boag_carbone_conroy_cortesero_goncalves_et al._2013, title={Permanent genetic resources added to molecular ecology resources database 1 April 2013-31 May 2013}, volume={13}, number={5}, journal={Molecular Ecology Resources}, author={Agostini, C. and Albaladejo, R. G. and Aparicio, A. and Arthofer, W. and Berrebi, P. and Boag, P. T. and Carbone, I. and Conroy, G. C. and Cortesero, A. M. and Goncalves, E. C. and et al.}, year={2013}, pages={966–968} }
 @article{horn_olarte_peterson_carbone_2013, title={Sexual reproduction in Aspergillus tubingensis from section Nigri}, volume={105}, ISSN={0027-5514 1557-2536}, url={http://dx.doi.org/10.3852/13-101}, DOI={10.3852/13-101}, number={5}, journal={Mycologia}, publisher={Informa UK Limited}, author={Horn, Bruce W. and Olarte, Rodrigo A. and Peterson, Stephen W. and Carbone, Ignazio}, year={2013}, month={Sep}, pages={1153–1163} }
 @article{moore_elliott_singh_horn_dorner_stone_chulze_barros_naik_wright_et al._2013, title={Sexuality Generates Diversity in the Aflatoxin Gene Cluster: Evidence on a Global Scale}, volume={9}, ISSN={1553-7374}, url={http://dx.doi.org/10.1371/journal.ppat.1003574}, DOI={10.1371/journal.ppat.1003574}, number={8}, journal={PLoS Pathogens}, publisher={Public Library of Science (PLoS)}, author={Moore, Geromy G. and Elliott, Jacalyn L. and Singh, Rakhi and Horn, Bruce W. and Dorner, Joe W. and Stone, Eric A. and Chulze, Sofia N. and Barros, German G. and Naik, Manjunath K. and Wright, Graeme C. and et al.}, editor={McDonald, Bruce A.Editor}, year={2013}, month={Aug}, pages={e1003574} }
 @article{olarte_horn_dorner_monacell_singh_stone_carbone_2012, title={Effect of sexual recombination on population diversity in aflatoxin production by Aspergillus flavus and evidence for cryptic heterokaryosis}, volume={21}, DOI={10.1111/j.1365-294x.2011.05398.x}, number={6}, journal={Molecular Ecology}, author={Olarte, R. A. and Horn, B. W. and Dorner, J. W. and Monacell, J. T. and Singh, R. and Stone, E. A. and Carbone, Ignazio}, year={2012}, pages={1453–1476} }
 @book{beirn_clarke_tredway_carbone_boehm_orshinsky_crouch_2012, title={Renaming the dollar spot fungus}, institution={Golf Course Management Current Research}, author={Beirn, L. and Clarke, B.B. and Tredway, L. and Carbone, I. and Boehm, MJ and Orshinsky, A.M. and Crouch, J.}, year={2012} }
 @article{arnold_carbone_lutzoni_may_2011, title={A multidimensional study of endophytic fungal diversity}, volume={2}, number={1}, journal={IMA Fungus}, author={Arnold, A.E. and Carbone, I. and Lutzoni, F. and May, G.}, year={2011}, pages={2–4} }
 @article{wu_bhatnagar_bui-klimke_carbone_hellmich_munkvold_paul_payne_takle_2011, title={Climate change impacts on mycotoxin risks in US maize}, volume={4}, ISSN={1875-0710 1875-0796}, url={http://dx.doi.org/10.3920/wmj2010.1246}, DOI={10.3920/wmj2010.1246}, number={1}, journal={World Mycotoxin Journal}, publisher={Wageningen Academic Publishers}, author={Wu, F. and Bhatnagar, D. and Bui-Klimke, T. and Carbone, I. and Hellmich, R. and Munkvold, G. and Paul, P. and Payne, G. and Takle, E.}, year={2011}, month={Jan}, pages={79–93} }
 @article{litvintseva_carbone_rossouw_thakur_govender_mitchell_2011, title={Evidence that the Human Pathogenic Fungus Cryptococcus neoformans var. grubii May Have Evolved in Africa}, volume={6}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0019688}, DOI={10.1371/journal.pone.0019688}, number={5}, journal={PLoS ONE}, publisher={Public Library of Science (PLoS)}, author={Litvintseva, Anastasia P. and Carbone, Ignazio and Rossouw, Jenny and Thakur, Rameshwari and Govender, Nelesh P. and Mitchell, Thomas G.}, editor={Nielsen, KirstenEditor}, year={2011}, month={May}, pages={e19688} }
 @article{olson_carbone_benson_2011, title={Phylogenetic history of Phytophthora cryptogea and P. drechsleri Isolates from floriculture crops in North Carolina greenhouses}, volume={101}, number={11}, journal={Phytopathology}, author={Olson, H. A. and Carbone, I. and Benson, D. M.}, year={2011}, pages={1373–1384} }
 @article{kaye_moyer_parks_carbone_cubeta_2011, title={Population genetic analysis of tomato spotted wilt virus on peanut in North Carolina and Virginia}, volume={101}, DOI={10.1094/phyto-01-10-0035}, number={1}, journal={Phytopathology}, author={Kaye, A. C. and Moyer, J. W. and Parks, E. J. and Carbone, Ignazio and Cubeta, M. A.}, year={2011}, pages={147–153} }
 @article{abbas_weaver_horn_carbone_monacell_shier_2011, title={Selection of Aspergillus flavus isolates for biological control of aflatoxins in corn}, volume={30}, DOI={10.3109/15569543.2011.591539}, number={2-3}, journal={Toxin Reviews}, author={Abbas, H. K. and Weaver, M. A. and Horn, B. W. and Carbone, Ignazio and Monacell, J. T. and Shier, W. T.}, year={2011}, pages={59–70} }
 @article{horn_moore_carbone_2011, title={Sexual reproduction in aflatoxin-producing Aspergillus nomius}, volume={103}, ISSN={0027-5514 1557-2536}, url={http://dx.doi.org/10.3852/10-115}, DOI={10.3852/10-115}, number={1}, journal={Mycologia}, publisher={Informa UK Limited}, author={Horn, Bruce W. and Moore, Geromy G. and Carbone, Ignazio}, year={2011}, month={Jan}, pages={174–183} }
 @inbook{moore_beltz_carbone_ehrlich_horn_2011, title={The Population Dynamics of Aflatoxigenic Aspergilli}, ISBN={9789533073958}, url={http://www.intechopen.com/articles/show/title/the-population-dynamics-of-aflatoxigenic-aspergilli}, DOI={10.5772/23698}, booktitle={Aflatoxins - Biochemistry and Molecular Biology}, publisher={InTech}, author={Moore, Geromy G. and Beltz, Shannon B. and Carbone, Ignazio and Ehrlich, Kenneth C. and Horn, Bruce W.}, editor={Guevara-González, Ramón GerardoEditor}, year={2011}, month={Oct} }
 @inproceedings{goss_larsen_carbone_givens_chastagner_grünwald_frankel_kliejunas_palmieri_2010, place={Albany, CA}, title={Population genetic analysis reveals ancient evolution and recent migration of P. ramorum}, url={https://www.fs.usda.gov/treesearch/pubs/35074}, DOI={10.2737/psw-gtr-229}, booktitle={Proceedings of the Sudden Oak Death Fourth Science Symposium}, publisher={U.S. Department of Agriculture, Forest Service, Pacific Southwest Research Station}, author={Goss, E.M. and Larsen, M. and Carbone, I.Givens and Givens, D.R. and Chastagner, G.A. and Grünwald, N.J. and Frankel, Susan J. and Kliejunas, John T. and Palmieri, Katharine M.}, editor={Frankel, S.J. and Kliejunas, J.T. and Palmieri, K.M.Editors}, year={2010}, pages={116–118} }
 @article{goss_carbone_grunwald_2009, title={Ancient isolation and independent evolution of the three clonal lineages of the exotic sudden oak death pathogen Phytophthora ramorum}, volume={18}, DOI={10.1111/j.1365-294X.2009.04089.x}, number={6}, journal={Molecular Ecology}, author={Goss, E. M. and Carbone, Ignazio and Grunwald, N. J.}, year={2009}, pages={1161–1174} }
 @article{lourenco_moya_gonzalez-candelas_carbone_maffia_mizubuti_2009, title={Molecular diversity and evolutionary processes of Alternaria solani in Brazil inferred using genealogical and coalescent approaches}, volume={99}, DOI={10.1094/PHYTO-99-6-0765}, number={6}, journal={Phytopathology}, author={Lourenco, V. and Moya, A. and Gonzalez-Candelas, F. and Carbone, Ignazio and Maffia, L. A. and Mizubuti, E. S. G.}, year={2009}, pages={765–774} }
 @article{parks_carbone_murphy_cowger_2009, title={Population genetic analysis of an eastern US wheat powdery mildew population reveals geographic subdivision and recent common ancestry with UK and Israeli populations}, volume={99}, DOI={10.1094/PHYTO-99-7-0840}, number={7}, journal={Phytopathology}, author={Parks, R. and Carbone, Ignazio and Murphy, J. P. and Cowger, C.}, year={2009}, pages={840–849} }
 @article{moore_singh_horn_carbone_2009, title={Recombination and lineage-specific gene loss in the aflatoxin gene cluster of Aspergillus flavus}, volume={18}, DOI={10.1111/j.1365-294X.2009.04414.x}, number={23}, journal={Molecular Ecology}, author={Moore, G. G. and Singh, R. and Horn, B. W. and Carbone, Ignazio}, year={2009}, pages={4870–4887} }
 @article{horn_ramirez-prado_carbone_2009, title={Sexual reproduction and recombination in the aflatoxin-producing fungus Aspergillus parasiticus}, volume={46}, DOI={10.1016/j.fgb.2008.11.004}, number={2}, journal={Fungal Genetics and Biology}, author={Horn, B. W. and Ramirez-Prado, J. H. and Carbone, Ignazio}, year={2009}, pages={169–175} }
 @article{horn_moore_carbone_2009, title={Sexual reproduction in Aspergillus flavus}, volume={101}, DOI={10.3852/09-011}, number={3}, journal={Mycologia}, author={Horn, B. W. and Moore, G. G. and Carbone, Ignazio}, year={2009}, pages={423–429} }
 @article{horn_ramirez-prado_carbone_2009, title={The sexual state of Aspergillus parasiticus}, volume={101}, DOI={10.3852/08-205}, number={2}, journal={Mycologia}, author={Horn, B. W. and Ramirez-Prado, J. H. and Carbone, Ignazio}, year={2009}, pages={275–280} }
 @article{powell_conant_brown_carbone_dean_2008, title={Altered patterns of gene duplication and differential gene gain and loss in fungal pathogens}, volume={9}, DOI={10.1186/1471-2164-9-147}, journal={BMC Genomics}, author={Powell, A. J. and Conant, G. C. and Brown, D. E. and Carbone, Ignazio and Dean, R. A.}, year={2008} }
 @article{ramirez-prado_moore_horn_carbone_2008, title={Characterization and population analysis of the mating-type genes in Aspergillus flavus and Aspergillus parasiticus}, volume={45}, DOI={10.1016/j.fgb.2008.06.007}, number={9}, journal={Fungal Genetics and Biology}, author={Ramirez-Prado, J. H. and Moore, G. G. and Horn, B. W. and Carbone, Ignazio}, year={2008}, pages={1292–1299} }
 @article{clark_carbone_2008, title={Chloroplast DNA phylogeography in long-lived Huon pine, a Tasmanian rain forest conifer}, volume={38}, DOI={10.1139/X07-209}, number={6}, journal={Canadian Journal of Forest Research}, author={Clark, C. M. and Carbone, Ignazio}, year={2008}, pages={1576–1589} }
 @article{brown_powell_carbone_dean_2008, title={GT-Miner: a graph-theoretic data miner, viewer, and model processor}, volume={3}, ISSN={0973-8894 0973-2063}, url={http://dx.doi.org/10.6026/97320630003235}, DOI={10.6026/97320630003235}, number={5}, journal={Bioinformation}, publisher={Biomedical Informatics}, author={Brown, Douglas E. and Powell, Amy J. and Carbone, Ignazio and Dean, Ralph A.}, year={2008}, month={Dec}, pages={235–237} }
 @article{charlton_carbone_tavantzis_cubeta_2008, title={Phylogenetic relatedness of the M2 double-stranded RNA in Rhizoctonia fungi}, volume={100}, DOI={10.3852/07-108R}, number={4}, journal={Mycologia}, author={Charlton, N. D. and Carbone, Ignazio and Tavantzis, S. M. and Cubeta, M. A.}, year={2008}, pages={555–564} }
 @article{parks_carbone_murphy_marshall_cowger_2008, title={Virulence structure of the Eastern US wheat powdery mildew population}, volume={92}, DOI={10.1094/PDIS-92-7-1074}, number={7}, journal={Plant Disease}, author={Parks, R. and Carbone, Ignazio and Murphy, J. P. and Marshall, D. and Cowger, C.}, year={2008}, pages={1074–1082} }
 @article{gomez-alpizar_carbone_ristaino_2007, title={An Andean origin of Phytophthora infestans inferred from mitochondrial and nuclear gene genealogies}, volume={104}, DOI={10.1073/pnas.0611479104}, number={9}, journal={Proceedings of the National Academy of Sciences of the United States of America}, author={Gomez-Alpizar, L. and Carbone, Ignazio and Ristaino, Jean}, year={2007}, pages={3306–3311} }
 @article{carbone_ramirez-prado_jakobek_horn_2007, title={Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster}, volume={7}, DOI={10.1186/1471-2148-7-111}, journal={BMC Evolutionary Biology}, author={Carbone, Ignazio and Ramirez-Prado, J. H. and Jakobek, J. L. and Horn, B. W.}, year={2007} }
 @article{moser_carbone_arasu_gibson_2007, title={Impact of population structure on genetic diversity of a potential vaccine target in the canine hookworm (Ancylostoma caninum)}, volume={93}, DOI={10.1645/GE-1096R.1}, number={4}, journal={Journal of Parasitology}, author={Moser, J. M. and Carbone, Ignazio and Arasu, P. and Gibson, G.}, year={2007}, pages={796–805} }
 @article{malvarez_carbone_grunwald_subbarao_schafer_kohn_2007, title={New populations of Sclerotinia sclerotiorum from lettuce in California and peas and lentils in Washington}, volume={97}, DOI={10.1094/PHYTO-97-4-0470}, number={4}, journal={Phytopathology}, author={Malvarez, G. and Carbone, Ignazio and Grunwald, N. J. and Subbarao, K. V. and Schafer, M. and Kohn, L. M.}, year={2007}, pages={470–483} }
 @article{carbone_jakobek_ramirez-prado_horn_2007, title={Recombination, balancing selection and adaptive evolution in the aflatoxin gene cluster of Aspergillus parasiticus}, volume={16}, DOI={10.1111/j.1365-294X.2007.03464.x}, number={20}, journal={Molecular Ecology}, author={Carbone, Ignazio and Jakobek, J. L. and Ramirez-Prado, J. H. and Horn, B. W.}, year={2007}, pages={4401–4417} }
 @article{deng_carbone_dean_2007, title={The evolutionary history of Cytochrome P450 genes in four filamentous Ascomycetes}, volume={7}, DOI={10.1186/1471-2148-7-30}, journal={BMC Evolutionary Biology}, author={Deng, J. X. and Carbone, Ignazio and Dean, R. A.}, year={2007} }
 @article{aylor_price_carbone_2006, title={SNAP: Combine and Map modules for multilocus population genetic analysis}, volume={22}, DOI={10.1093/bioinformatics/bt/136}, number={11}, journal={Bioinformatics}, author={Aylor, D. L. and Price, E. W. and Carbone, Ignazio}, year={2006}, pages={1399–1401} }
 @article{charles_carbone_davies_bird_burke_kerry_opperman_2005, title={Phylogenetic analysis of Pasteuria penetrans by use of multiple genetic loci}, volume={187}, DOI={10.1128/JB.187.16.5700-5708.2005}, number={16}, journal={Journal of Bacteriology}, author={Charles, L. and Carbone, Ignazio and Davies, K. G. and Bird, D. and Burke, M. and Kerry, B. R. and Opperman, C. H.}, year={2005}, pages={5700–5708} }
 @article{price_carbone_2005, title={SNAP: workbench management tool for evolutionary population genetic analysis}, volume={21}, DOI={10.1093/bioinformatics/bti003}, number={3}, journal={Bioinformatics}, author={Price, E. W. and Carbone, Ignazio}, year={2005}, pages={402–404} }
 @article{dean_mitchell_kulkarni_pan_carbone_brown_oh_donofrio_jeong_2005, title={The  genome sequence of the rice blast fungus Magnaporthe grisea}, volume={434}, DOI={10.1038/nature03449}, number={7036}, journal={Nature}, author={Dean, R. A. and Mitchell, T. K. and Kulkarni, R. D. and Pan, H. Q. and Carbone, Ignazio and Brown, D. and Oh, Y. Y. and Donofrio, N. and Jeong, J. S.}, year={2005}, pages={980–986} }
 @inbook{carbone_kohn_2004, title={Inferring Process from Pattern in Fungal Population Genetics}, ISBN={9780444516428}, ISSN={1874-5334}, url={http://dx.doi.org/10.1016/s1874-5334(04)80005-4}, DOI={10.1016/s1874-5334(04)80005-4}, booktitle={Fungal Genomics}, publisher={Elsevier}, author={Carbone, Ignazio and Kohn, Linda}, year={2004}, pages={29–58} }
 @article{carbone_liu_hillman_milgroom_2004, title={Recombination and migration of Cryphonectria hypovirus 1 as inferred from gene genealogies and the coalescent}, volume={166}, DOI={10.1534/genetics.166.4.1611}, number={4}, journal={Genetics}, author={Carbone, Ignazio and Liu, Y. C. and Hillman, B. I. and Milgroom, M. G.}, year={2004}, pages={1611–1629} }
 @article{phillips_carbone_gold_kohn_2002, title={Phylogeography and Genotype-Symptom Associations in Early and Late Season Infections of Canola by Sclerotinia sclerotiorum}, volume={92}, ISSN={0031-949X}, url={http://dx.doi.org/10.1094/phyto.2002.92.7.785}, DOI={10.1094/phyto.2002.92.7.785}, number={7}, journal={Phytopathology}, publisher={Scientific Societies}, author={Phillips, D. V. and Carbone, I. and Gold, S. E. and Kohn, L. M.}, year={2002}, month={Jul}, pages={785–793} }
 @article{carbone_kohn_2001, title={A microbial population-species interface: nested cladistic and coalescent inference with multilocus data}, volume={10}, ISSN={0962-1083 1365-294X}, url={http://dx.doi.org/10.1046/j.1365-294x.2001.01244.x}, DOI={10.1046/j.1365-294x.2001.01244.x}, number={4}, journal={Molecular Ecology}, publisher={Wiley}, author={Carbone, I. and Kohn, L. M.}, year={2001}, month={Apr}, pages={947–964} }
 @article{carbone_kohn_2001, title={Multilocus nested haplotype networks extended with DNA fingerprints show common origin and fine-scale, ongoing genetic divergence in a wild microbial metapopulation}, volume={10}, ISSN={0962-1083 1365-294X}, url={http://dx.doi.org/10.1046/j.0962-1083.2001.01380.x}, DOI={10.1046/j.0962-1083.2001.01380.x}, number={10}, journal={Molecular Ecology}, publisher={Wiley}, author={Carbone, Ignazio and Kohn, Linda M.}, year={2001}, month={Dec}, pages={2409–2422} }
 @article{carbone_kohn_1999, title={A Method for Designing Primer Sets for Speciation Studies in Filamentous Ascomycetes}, volume={91}, ISSN={0027-5514}, url={http://dx.doi.org/10.2307/3761358}, DOI={10.2307/3761358}, number={3}, journal={Mycologia}, publisher={JSTOR}, author={Carbone, Ignazio and Kohn, Linda M.}, year={1999}, month={May}, pages={553} }
 @article{carbone_anderson_kohn_1999, title={Patterns of Descent in Clonal Lineages and Their Multilocus Fingerprints Are Resolved with Combined Gene Genealogies}, volume={53}, ISSN={0014-3820}, url={http://dx.doi.org/10.2307/2640916}, DOI={10.2307/2640916}, number={1}, journal={Evolution}, publisher={JSTOR}, author={Carbone, Ignazio and Anderson, James B. and Kohn, Linda M.}, year={1999}, month={Feb}, pages={11} }
 @article{carbone_anderson_kohn_1995, title={A group-I intron in the mitochondrial small subunit ribosomal RNA gene of Sclerotinia sclerotiorum}, volume={27}, ISSN={0172-8083 1432-0983}, url={http://dx.doi.org/10.1007/bf00313431}, DOI={10.1007/bf00313431}, number={2}, journal={Current Genetics}, publisher={Springer Science and Business Media LLC}, author={Carbone, Ignazio and Anderson, James B. and Kohn, Linda M.}, year={1995}, month={Jan}, pages={166–176} }
 @article{carbone_kohn_1993, title={Ribosomal DNA Sequence Divergence within Internal Transcribed Spacer 1 of the Sclerotiniaceae}, volume={85}, ISSN={0027-5514}, url={http://dx.doi.org/10.2307/3760703}, DOI={10.2307/3760703}, number={3}, journal={Mycologia}, publisher={JSTOR}, author={Carbone, Ignazio and Kohn, Linda M.}, year={1993}, month={May}, pages={415} }
 @article{kohn_stasovski_carbone_royer_anderson_1991, title={Mycelial Incompatibility and Molecular Markers Identify Genetic Variability in Field Populations of Sclerotinia sclerotiorum}, volume={81}, ISSN={0031-949X}, url={http://dx.doi.org/10.1094/phyto-81-480}, DOI={10.1094/phyto-81-480}, number={4}, journal={Phytopathology}, publisher={Scientific Societies}, author={Kohn, L.M. and Stasovski, E. and Carbone, I. and Royer, J. and Anderson, J.B.}, year={1991}, pages={480–485} }
 @article{kohn_carbone_anderson_1990, title={Mycelial interactions in Sclerotinia sclerotiorum}, volume={14}, ISSN={0147-5975}, url={http://dx.doi.org/10.1016/0147-5975(90)90023-m}, DOI={10.1016/0147-5975(90)90023-m}, number={3}, journal={Experimental Mycology}, publisher={Elsevier BV}, author={Kohn, Linda M. and Carbone, Ignazio and Anderson, James B.}, year={1990}, month={Sep}, pages={255–267} }
 @article{edwards_ayroles_stone_carbone_lyman_mackay, title={A transcriptional network associated with natural variation in Drosophila aggressive behavior}, volume={10}, number={7}, journal={Genome Biology}, author={Edwards, A. C. and Ayroles, J. F. and Stone, E. A. and Carbone, M. A. and Lyman, R. F. and Mackay, T. F. C.} }