Alfredo Blakeley-Ruiz
Also known as: Alfredo
https://orcid.org/0000-0001-7638-5849
Microbiome, Proteomics, Genomics, Systems Biology
Works (5)
Updated: July 5th, 2023 14:05
2022 journal article
Considerations for constructing a protein sequence database for metaproteomics
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 20, 937–952.
co-author countries:
United States of America 🇺🇸
Contributors: J. Blakeley-Ruiz n
author keywords: Metaproteome; Metagenomics; Microbiome; Microbial community; Multi-omics; Microbiota; Microbial ecology
doi.org (publisher)
Sources: Web Of Science, ORCID
Added: April 25, 2022
2022 journal article
Morphine and high-fat diet differentially alter the gut microbiota composition and metabolic function in lean versus obese mice
ISME Communications, 2(1).
co-author countries:
United States of America 🇺🇸
Contributors: J. Blakeley-Ruiz*
Source: ORCID
Added: August 25, 2022
2020 thesis
Extracting detailed metabolic information and connections from mammalian gut microbiomes via metaproteomics
(PhD diss., University of Tennessee). https://trace.tennessee.edu/utk_graddiss/6194
Contributors: J. Blakeley-Ruiz
Source: ORCID
Added: August 25, 2022
2019 journal article
Combining integrated systems-biology approaches with intervention-based experimental design provides a higher-resolution path forward for microbiome research
Behavioral and Brain Sciences.
Source: ORCID
Added: August 25, 2022
2019 journal article
Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes
Microbiome.
author keywords: Gut microbiome; Metaproteomics; Crohn's disease; Longitudinal analyses; Microbial metabolic function; Human microbiome
MeSH headings : Acetylglucosamine / analysis; Adult; Bacteria / genetics; Bacteria / metabolism; Crohn Disease / microbiology; Crohn Disease / surgery; Cytidine Monophosphate N-Acetylneuraminic Acid / analysis; Fatty Acids, Volatile / analysis; Feces / microbiology; Female; Gastrointestinal Microbiome / genetics; Gastrointestinal Microbiome / physiology; Humans; Male; Middle Aged; Proteome / metabolism; Proteomics; RNA, Ribosomal, 16S / genetics
Source: ORCID
Added: August 25, 2022
Employment
Updated: August 26th, 2020 16:40
2020 - present
North Carolina State University Raleigh, NC, US
Postdoc
Plant and Microbial Biology
2011 - 2014
Infectious Disease Research Institute Seattle, WA, US
Research Assitant
TB Discovery
Education
Updated: August 26th, 2020 16:39
2014 - 2020
University of Tennessee Knoxville, TN, US
PhD
Genome Science and Technology
2007 - 2011
University of Notre Dame Notre Dame, IN, US
B.S.
Biological Sciences
