Alfredo Blakeley-Ruiz

Also known as: Alfredo

Microbiome, Proteomics, Genomics, Systems Biology

Works (5)

Updated: July 5th, 2023 14:05

2022 journal article

Considerations for constructing a protein sequence database for metaproteomics


By: J. Blakeley-Ruiz n & M. Kleiner n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ

Contributors: J. Blakeley-Ruiz n

author keywords: Metaproteome; Metagenomics; Microbiome; Microbial community; Multi-omics; Microbiota; Microbial ecology
Sources: Web Of Science, ORCID
Added: April 25, 2022

2022 journal article

Morphine and high-fat diet differentially alter the gut microbiota composition and metabolic function in lean versus obese mice

ISME Communications, 2(1).

By: J. Blakeley-Ruiz*, C. McClintock*, H. Shrestha *, S. Poudel *, Z. Yang*, R. Giannone *, J. Choo, M. Podar * ...

co-author countries: United States of America πŸ‡ΊπŸ‡Έ

Contributors: J. Blakeley-Ruiz*

Source: ORCID
Added: August 25, 2022

2020 thesis

Extracting detailed metabolic information and connections from mammalian gut microbiomes via metaproteomics

(PhD diss., University of Tennessee).

By: J. Blakeley-Ruiz

Contributors: J. Blakeley-Ruiz

Source: ORCID
Added: August 25, 2022

2019 journal article

Combining integrated systems-biology approaches with intervention-based experimental design provides a higher-resolution path forward for microbiome research

Behavioral and Brain Sciences.

Source: ORCID
Added: August 25, 2022

2019 journal article

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes


author keywords: Gut microbiome; Metaproteomics; Crohn's disease; Longitudinal analyses; Microbial metabolic function; Human microbiome
MeSH headings : Acetylglucosamine / analysis; Adult; Bacteria / genetics; Bacteria / metabolism; Crohn Disease / microbiology; Crohn Disease / surgery; Cytidine Monophosphate N-Acetylneuraminic Acid / analysis; Fatty Acids, Volatile / analysis; Feces / microbiology; Female; Gastrointestinal Microbiome / genetics; Gastrointestinal Microbiome / physiology; Humans; Male; Middle Aged; Proteome / metabolism; Proteomics; RNA, Ribosomal, 16S / genetics
Source: ORCID
Added: August 25, 2022


Updated: August 26th, 2020 16:40

2020 - present

North Carolina State University Raleigh, NC, US
Postdoc Plant and Microbial Biology

2011 - 2014

Infectious Disease Research Institute Seattle, WA, US
Research Assitant TB Discovery


Updated: August 26th, 2020 16:39

2014 - 2020

University of Tennessee Knoxville, TN, US
PhD Genome Science and Technology

2007 - 2011

University of Notre Dame Notre Dame, IN, US
B.S. Biological Sciences