Alfredo Blakeley-Ruiz

Bartlett, A., Blakeley-Ruiz, A., Richie, T., Theriot, C., & Kleiner, M. (2023, December 7). Large Quantities of Bacterial DNA and Protein in Common Dietary Protein Source Used in Microbiome Studies. https://doi.org/10.1101/2023.12.07.570621

Blakeley-Ruiz, J. A., & Kleiner, M. (2022). Considerations for constructing a protein sequence database for metaproteomics. COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 20, 937–952. https://doi.org/10.1016/j.csbj.2022.01.018

Blakeley-Ruiz, J. A., McClintock, C. S., Shrestha, H. K., Poudel, S., Yang, Z. K., Giannone, R. J., … Hettich, R. L. (2022). Morphine and high-fat diet differentially alter the gut microbiota composition and metabolic function in lean versus obese mice. ISME Communications, 2(1). https://doi.org/10.1038/s43705-022-00131-6

Blakeley-Ruiz, J. A. (2020). Extracting detailed metabolic information and connections from mammalian gut microbiomes via metaproteomics (PhD diss., University of Tennessee). Retrieved from https://trace.tennessee.edu/utk_graddiss/6194

Combining integrated systems-biology approaches with intervention-based experimental design provides a higher-resolution path forward for microbiome research. (2019). Behavioral and Brain Sciences. https://doi.org/10.1017/s0140525x18002911

Metaproteomics reveals persistent and phylum-redundant metabolic functional stability in adult human gut microbiomes of Crohn’s remission patients despite temporal variations in microbial taxa, genomes, and proteomes. (2019). Microbiome. https://doi.org/10.1186/s40168-019-0631-8