Jose Bruno-Barcena

Dagher, S. F., Vaishnav, A., Stanley, C. B., Meilleur, F., Edwards, B. F. P., & Bruno-Barcena, J. M. (2023). Structural analysis and functional evaluation of the disordered ß-hexosyltransferase region from <i>Hamamotoa (Sporobolomyces) singularis</i>. FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY, 11. https://doi.org/10.3389/fbioe.2023.1291245

Zuleta-Correa, A., Chinn, M. S., & Bruno-Barcena, J. M. (2022, August 1). Application of raw industrial sweetpotato hydrolysates for butanol production by Clostridium beijerinckii NCIMB 8052. BIOMASS CONVERSION AND BIOREFINERY, Vol. 8. https://doi.org/10.1007/s13399-022-03101-z

Gookin, J. L. L., Strong, S. J. J., Bruno-Barcena, J. M., Stauffer, S. H. H., Williams, S., Wassack, E., … Davidson, G. (2022). Randomized placebo-controlled trial of feline-origin Enterococcus hirae probiotic effects on preventative health and fecal microbiota composition of fostered shelter kittens. FRONTIERS IN VETERINARY SCIENCE, 9. https://doi.org/10.3389/fvets.2022.923792

Arnold, J. W., Whittington, H. D., Dagher, S. F., Roach, J., Azcarate-Peril, M. A., & Bruno-Barcena, J. M. (2021). Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome. FRONTIERS IN NUTRITION, 8. https://doi.org/10.3389/fnut.2021.640100

Arnold, J. W., Roach, J., Fabela, S., Moorfield, E., Ding, S., Blue, E., … Azcarate-Peril, M. A. (2021). The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut. MICROBIOME, 9(1). https://doi.org/10.1186/s40168-020-00980-0

Arnold, J. W., Roach, J., Fabela, S., Moorfield, E., Ding, S., Blue, E., … Azcarate-Peril, M. A. (2021, February 26). The pleiotropic effects of prebiotic galacto-oligosaccharides on the aging gut (vol 9, 31, 2021). MICROBIOME, Vol. 9. https://doi.org/10.1186/s40168-021-01030-z

Accelerated Biodegradation of the Agrochemical Ametoctradin by Soil-Derived Microbial Consortia. (2020). Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2020.01898

An iterative approach to improve xylose consumption by Clostridium autoethanogenum: From substrate concentration to pH adjustment. (2020). Biomass and Bioenergy. https://doi.org/10.1016/j.biombioe.2020.105663

Moore, M. A., Whittington, H. D., Azcarate-Peril, M. A., & Bruno-Bárcena, J. M. (2020). Draft Genome Sequence of Lactobacillus rhamnosus NCB 441, Isolated from Egyptian White Domiati Cheese. Microbiology Resource Announcements. https://doi.org/10.1128/MRA.01191-20

Natzke, J., & Bruno-Bárcena, J. M. (2020). Two-stage continuous conversion of carbon monoxide to ethylene by whole cells of Azotobacter vinelandii. Applied and Environmental Microbiology, 86(11). https://doi.org/10.1128/aem.00446-20

Zuleta-Correa, A., Chinn, M. S., Alfaro-Córdoba, M., Truong, V.-D., Yencho, G. C., & Bruno-Bárcena, J. M. (2020). Use of unconventional mixed Acetone-Butanol-Ethanol solvents for anthocyanin extraction from Purple-Fleshed sweetpotatoes. Food Chemistry, 314, 125959. https://doi.org/10.1016/j.foodchem.2019.125959

How Fermented Foods Feed a Healthy Gut Microbiota: A Nutrition Continuum. (2019). https://doi.org/10.1007/978-3-030-28737-5

Watson, V. E., Jacob, M. E., Bruno-Bárcena, J. M., Amirsultan, S., Stauffer, S. H., Píqueras, V. O., … Gookin, J. L. (2019). Influence of the intestinal microbiota on disease susceptibility in kittens with experimentally-induced carriage of atypical enteropathogenic Escherichia coli. Veterinary Microbiology, 231, 197–206. https://doi.org/10.1016/j.vetmic.2019.03.020

Whittington H.D., D. S. F. (2019). Production and Conservation of Starter Cultures: From “Backslopping” to Controlled Fermentations. In A. R. In: Azcarate-Peril M. (Ed.), How Fermented Foods Feed a Healthy Gut Microbiota: A Nutrition Continuum. https://doi.org/10.1007/978-3-030-28737-5_5

Azotobacter vinelandii Nitrogenase Activity, Hydrogen Production, and Response to Oxygen Exposure. (2018). Applied and Environmental Microbiology. https://doi.org/10.1128/AEM.01208-18

Natzke, J., Noar, J., & Bruno-Bárcena, J. M. (2018). Azotobacter vinelandii nitrogenase activity, hydrogen production, and response to oxygen exposure. Applied and Environmental Microbiology, 84(16). https://doi.org/10.1128/AEM.001208-18

Noar, J. D., & Bruno-Bárcena, J. M. (2018). Azotobacter vinelandii: The source of 100 years of discoveries and many more to come. Microbiology (United Kingdom), 164(4), 421–436. https://doi.org/10.1099/mic.0.000643

Arnold, J. W., Simpson, J. B., Roach, J., Bruno-Barcena, J. M., & Azcarate-Peril, M. A. (2018). Prebiotics for Lactose Intolerance: Variability in Galacto-Oligosaccharide Utilization by Intestinal Lactobacillus rhamnosus. NUTRIENTS, 10(10). https://doi.org/10.3390/nu10101517

Sandoval-Espinola, W. J., Chinn, M. S., Thon, M. R., & Bruno-Bárcena, J. M. (2017). Evidence of mixotrophic carbon-capture by n-butanol-producer Clostridium beijerinckii. Scientific Reports, 7(1). https://doi.org/10.1038/s41598-017-12962-8

Packed-bed Reactors, Dynamic Culturing, and Stress-Directed Microbiome Selection; a Case Study of Agrochemicals Soil Biodegradation. (2017). In Vitro Cellular and Developmental Biology - Animal. Retrieved from https://publons.com/publon/31684349/

Dagher, S. F., & Bruno-Barcena, J. M. (2016). A novel N-terminal region of the membrane beta-hexosyltransferase: its role in secretion of soluble protein by Pichia pastoris. MICROBIOLOGY-SGM, 162(1), 23–34. https://doi.org/10.1099/mic.0.000211

Whitham, J. M., Schulte, M. J., Bobay, B. G., Bruno-Barcena, J. M., Chinn, M. S., Flickinger, M. C., … Grunden, A. M. (2016). Characterization of Clostridium ljungdahlii OTA1: a non-autotrophic hyper ethanol-producing strain. Applied Microbiology and Biotechnology, 101(4), 1615–1630. https://doi.org/10.1007/s00253-016-7978-6

Monteagudo-Mera, A., Arthur, J. C., Jobin, C., Keku, T., Bruno-Barcena, J. M., & Azcarate-Peril, M. A. (2016). High purity galacto-oligosaccharides enhance specific Bifidobacterium species and their metabolic activity in the mouse gut microbiome. Beneficial Microbes, 7(2), 247–264. https://doi.org/10.3920/bm2015.0114

Noar, J. D., & Bruno-Barcena, J. M. (2016). [Review of Protons and pleomorphs: aerobic hydrogen production in Azotobacters]. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY, 32(2). https://doi.org/10.1007/s11274-015-1980-5

Noar, J., Loveless, T., Luis Navarro-Herrero, J., Olson, J. W., & Bruno-Barcena, J. M. (2015). Aerobic Hydrogen Production via Nitrogenase in Azotobacter vinelandii CA6. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 81(13), 4507–4516. https://doi.org/10.1128/aem.00679-15

Leite, M. C. T., Troxell, B., Bruno-Bárcena, J. M., & Hassan, H. M. (2015). Biology of reactive oxygen species, oxidative stress, and antioxidants in lactic acid bacteria. Probiotics and Prebiotics: Current Research and Future Trends, 205–218. https://doi.org/10.21775/9781910190098.14

Bruno-Barcena, J. M., & Azcarate-Peril, M. A. (2015). Galacto-oligosaccharides and colorectal cancer: Feeding our intestinal probiome. JOURNAL OF FUNCTIONAL FOODS, 12, 92–108. https://doi.org/10.1016/j.jff.2014.10.029

Sandoval-Espinola, W. J., Chinn, M., & Bruno-Barcena, J. M. (2015). Inoculum optimization of Clostridium beijerinckii for reproducible growth. FEMS Microbiology Letters, 362(19), fnv164. https://doi.org/10.1093/femsle/fnv164

Utturkar, S. M., Klingeman, D. M., Bruno-Barcena, J. M., Chinn, M. S., Grunden, A. M., Köpke, M., & Brown, S. D. (2015). Sequence data for Clostridium autoethanogenum using three generations of sequencing technologies. Scientific Data, 2(1). https://doi.org/10.1038/sdata.2015.14

Complete Genome Sequence of Solvent-Tolerant Clostridium beijerinckii Strain SA-1. (2014). Microbiology Resource Announcements. https://doi.org/10.1128/GENOMEA.01310-14.COPYRIGHT

Noar, J., Makwana, S. T., & Bruno-Bárcena, J. M. (2014). Complete Genome Sequence of Solvent-Tolerant Clostridium beijerinckii Strain SA-1. Genome Announcements, 2(6). https://doi.org/10.1128/genomea.01310-14

Sandoval-Espinola, W. J., Makwana, S. T., Chinn, M. S., Thon, M. R., Andrea Azcarate-Peril, M., & Bruno-Barcena, J. M. (2013). Comparative phenotypic analysis and genome sequence of Clostridium beijerinckii SA-1, an offspring of NCIMB 8052. MICROBIOLOGY-SGM, 159(PART 12), 2558–2570. https://doi.org/10.1099/mic.0.069534-0

Noar, J. D., & Bruno-Bárcena, J. M. (2013). Complete Genome Sequences of Azotobacter vinelandii Wild-Type Strain CA and Tungsten-Tolerant Mutant Strain CA6. Genome Announcements, 6(3). https://doi.org/10.1128/genomea.00313-13

Bruno-Barcena, J. M., Chinn, M. S., & Grunden, A. M. (2013). Genome Sequence of the Autotrophic Acetogen Clostridium autoethanogenum JA1-1 Strain DSM 10061, a Producer of Ethanol from Carbon Monoxide. Genome Announcements, 1(4). https://doi.org/10.1128/genomea.00628-13

Dagher, S. F., Azcarate-Peril, M. A., & Bruno-Barcena, J. M. (2013). Heterologous Expression of a Bioactive beta-Hexosyltransferase, an Enzyme Producer of Prebiotics, from Sporobolomyces singularis. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 79(4), 1241–1249. https://doi.org/10.1128/aem.03491-12

Heluane, H., Evans, M. R., Dagher, S. F., & Bruno-Barcena, J. M. (2011). Meta-Analysis and Functional Validation of Nutritional Requirements of Solventogenic Clostridia Growing under Butanol Stress Conditions and Coutilization of D-Glucose and D-Xylose. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 77(13), 4473–4485. https://doi.org/10.1128/aem.00116-11

Azcarate-Peril, M. A., Sikes, M., & Bruno-Barcena, J. M. (2011). [Review of The intestinal microbiota, gastrointestinal environment and colorectal cancer: a putative role for probiotics in prevention of colorectal cancer?]. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 301(3), G401–G424. https://doi.org/10.1152/ajpgi.00110.2011

Dagher, S. F., Ragout, A. L., Sineriz, F., & Bruno-Barcena, J. M. (2010). Cell Immobilization for Production of Lactic Acid: Biofilms Do It Naturally. ADVANCES IN APPLIED MICROBIOLOGY, VOL 71, Vol. 71, pp. 113–148. https://doi.org/10.1016/s0065-2164(10)71005-4

Bruno-Barcena, J. M., Azcarate-Peril, M. A., & Hassan, H. M. (2010). Role of Antioxidant Enzymes in Bacterial Resistance to Organic Acids. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 76(9), 2747–2753. https://doi.org/10.1128/aem.02718-09

Carroll, I. M., Andrus, J. M., Bruno-Barcena, J. M., Klaenhammer, T. R., Hassan, H. M., & Threadgill, D. S. (2007). Anti-inflammatory properties of Lactobacillus gasseri expressing manganese superoxide dismutase using the interleukin 10-deficient mouse model of colitis. AMERICAN JOURNAL OF PHYSIOLOGY-GASTROINTESTINAL AND LIVER PHYSIOLOGY, 293(4), G729–G738. https://doi.org/10.1152/ajpgi.00132.2007

Pico-Marco, E., Navarro, J. L., & Bruno-Barcena, J. M. (2006). A closed loop exponential feeding law: Invariance and global stability analysis. JOURNAL OF PROCESS CONTROL, 16(4), 395–402. https://doi.org/10.1016/j.jprocont.2005.06.014

Azcarate-Peril, M. A., Bruno-Barcena, J. M., Hassan, H. M., & Klaenhammer, T. R. (2006). Transcriptional and functional analysis of oxalyl-coenzyme A (CoA) decarboxylase and formyl-CoA transferase genes from Lactobacillus acidophilus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 72(3), 1891–1899. https://doi.org/10.1128/AEM.72.3.1891-1899.2006

Bruno-Barcena, J. M., Azcarate-Peril, M. A., Klaenhammer, T. R., & Hassan, H. M. (2005). Marker-free chromosomal integration of the manganese superoxide dismutase gene (sodA) from Streptococcus thermophilus into Lactobacillus gasseri. FEMS MICROBIOLOGY LETTERS, 246(1), 91–101. https://doi.org/10.1016/j.femsle.2005.03.044

Pérez-Torrado, R., Bruno-Bárcena, J. M., & Matallana, E. (2005). Monitoring stress-related genes during the process of biomass propagation of Saccharomyces cerevisiae strains used for wine making. Applied and Environmental Microbiology, 11(11), 6831–6837. https://doi.org/10.1128/aem.71.11.6831-6837.2005

Bruno-Barcena, J. M., Andrus, J. M., Libby, S. L., Klaenhammer, T. R., & Hassan, H. M. (2004). Expression of a heterologous manganese superoxide dismutase gene in intestinal lactobacilli provides protection against hydrogen peroxide toxicity. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 70(8), 4702–4710. https://doi.org/10.1128/AEM.70.8.4702-4710.2004

pH regulation of enzyme production in Aspergillus nidulans growing in aerobic batch fermenter. (2002). Biotechnology Letters, 4(7), 567–572. https://doi.org/10.1023/a:1014868726188

Continuous production of L(+)-lactic acid by Lactobacillus casei in two-stage systems. (1999). Applied Microbiology and Biotechnology, 3(3), 316–324. https://doi.org/10.1007/s002530051397

Raya-Tonetti, G., Córdoba, P., Bruno-Bárcena, J., Siñeriz, F., & Perotti, N. (1999). Fluidized bed ion exchange for improving purification of lactic acid from fermentation. Biotechnology Techniques., 3(3), 201–205. https://doi.org/10.1023/a:1008909031995

Chemostat production of plantaricin C by <i>Lactobacillus plantarum</i> LL441. (1998). Applied and Environmental Microbiology. Retrieved from https://publons.com/wos-op/publon/28290537/

Chemostat production of plantaricin C by Lactobacillus plantarum LL441. (1998). Applied and Environmental Microbiology, 64(9), 3512–3514. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-3543035172&partnerID=MN8TOARS

Chemostat production of plantaricin C by Lactobacillus plantarum LL441. (1998). Applied and Environmental Microbiology, 9. Retrieved from http://europepmc.org/abstract/med/9726907

Fragile cells of Lactobacillus casei suitable for plasmid DNA isolation. (1998). Biotechnology Techniques. Retrieved from https://publons.com/publon/31684369/

Bruno-Bárcena, J. M., Azcárate-Peril, M. A., Ragout, A., Font De Valdez, G., Raya, R., & Siñeriz, F. (1998). Fragile cells of Lactobacillus casei suitable for plasmid DNA isolation. Biotechnology Techniques., 2(2), 97–99. https://doi.org/10.1023/a:1017139713930

Microbial physiology applied to process optimisation: Lactic acid bacteria. (1998). Advances in Bioprocess Engineering Volume Ii. https://doi.org/10.1007/978-94-017-0643-8_6

De Valdez, G. F., Ragout, A., Bruno-Bárcena, J. M., Diekmann, H., & Siñeriz, F. (1997). Shifts in pH affect the maltose/glycerol co-fermentation by Lactobacillus reuteri. Biotechnology Letters, 19(7), 645–649. https://doi.org/10.1023/A:1018334714278