Jigar Desai

Works (5)

Updated: July 5th, 2023 15:36
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2021 journal article

Warm nights disrupt transcriptome rhythms in field-grown rice panicles

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(25).

By: J. Desai n, L. Lawas *, A. Valente, A. Leman, D. Grinevich n, S. Jagadish*, C. Doherty n 

co-author countries: Philippines 🇵🇭 United States of America 🇺🇸
author keywords: climate change impact; nighttime temperature increase; global food security; diel transcriptional networks
MeSH headings : Agriculture; Biomass; Circadian Rhythm / genetics; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes, Plant; Oryza / genetics; Oryza / growth & development; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reproducibility of Results; Temperature; Time Factors; Transcription Factors / metabolism; Transcription, Genetic; Transcriptome / genetics
Sources: Web Of Science, ORCID
Added: June 22, 2021

2019 journal article

Analysis of differential gene expression and alternative splicing is significantly influenced by choice of reference genome

RNA, 25(6), 669–684.

By: E. Slabaugh n, J. Desai n, R. Sartor n, L. Lawas *, S. Krishna Jagadish* & C. Doherty n 

co-author countries: Germany 🇩🇪 Philippines 🇵🇭 United States of America 🇺🇸
author keywords: Oryza sativa; differential gene expression; splicing; reference genome; RNA-seq; transcriptome analysis
MeSH headings : Alternative Splicing; Base Sequence; Chromosome Mapping / methods; Gene Expression Profiling / standards; Genes, Essential; Genome, Plant; High-Throughput Nucleotide Sequencing; Oryza / classification; Oryza / genetics; Oryza / metabolism; Polymorphism, Single Nucleotide; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reference Standards; Sequence Alignment; Transcriptome
Sources: Web Of Science, ORCID
Added: June 4, 2019

2018 journal article

Neural Net Classification Combined With Movement Analysis to Evaluate Setaria viridis as a Model System for Time of Day of Anther Appearance

FRONTIERS IN PLANT SCIENCE, 9.

By: J. Desai n, E. Slabaugh n, D. Liebelt n, J. Fredenberg n, B. Gray*, S. Jagadish*, O. Wilkins *, C. Doherty n 

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
author keywords: flower opening time; spikelet opening time; timing of anthesis; setaria; developmental stage; image analysis of plants; biological image classification
Sources: Web Of Science, ORCID
Added: November 12, 2018

2017 journal article

A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae

PLANT JOURNAL, 92(5), 796–807.

By: M. Reyes n, M. Flores-Vergara n, O. Guerra-Peraza n, C. Rajabu*, J. Desai n, Y. Hiromoto-Ruiz n, J. Ndunguru*, L. Hanley-Bowdoin n  ...

co-author countries: Tanzania, United Republic of 🇹🇿 United States of America 🇺🇸
author keywords: Arabidopsis; BCTV; CaLCuV; geminivirus; gip-1; immunity; Pla-1; VIGS
MeSH headings : Arabidopsis / virology; Geminiviridae / immunology; Gene Silencing; Plant Diseases / immunology; Plant Diseases / virology; Plant Immunity; Quantitative Trait Loci / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

VapC toxins drive cellular dormancy under uranium stress for the extreme thermoacidophile Metallosphaera prunae

ENVIRONMENTAL MICROBIOLOGY, 19(7), 2831–2842.

By: A. Mukherjee n, G. Wheaton n, J. Counts n, B. Ijeomah n, J. Desai n & R. Kelly n 

co-author countries: United States of America 🇺🇸
MeSH headings : Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Bacterial Toxins / genetics; Bacterial Toxins / metabolism; Gene Expression Regulation, Bacterial / physiology; RNA Stability / physiology; Sulfolobaceae / genetics; Sulfolobaceae / growth & development; Sulfolobaceae / metabolism; Transcriptome; Uranium / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018