@article{andersen_clark_hopper_hodson_schilling_daniels_woods_kovach_berlinsky_kenter_et al._2021, title={Methods of domestic striped bass (Morone saxatilis) spawning that do not require the use of any hormone induction}, volume={533}, ISSN={["1873-5622"]}, DOI={10.1016/j.aquaculture.2020.736025}, abstractNote={Nineteen batch spawning trials were conducted using 5th and 6th generation domestic striped bass (Morone saxatilis) to demonstrate the ability of these fish to volitionally spawn in large tanks to produce larvae using only photothermal and salinity conditioning. The findings described are the first report of multiple striped bass successfully batch spawning in captivity without exogenous hormone administration. The results of these trials indicate that an approximately 1:1 ratio of female to male striped bass in a single batch spawning unit is more favorable for production, that a minimum of at least 10 fish of each sex is required to elicit this particular spawning behavior, and that using 25 fish of each sex will yield commercially scalable larval production. This batch spawning method has been employed to effectively and consistently spawn over half of the female striped bass in the National Program for Genetic Improvement and Selective Breeding for the Hybrid Striped Bass Industry (N = 202 of 334 female fish over five years) to produce 44,608,181 swim-up larvae (26.6% hatching rate). Microsatellite genotyping and parentage assignment demonstrates that females will reproduce with between 2 and 18 males and that males will reproduce with between 1 and 6 females. Moreover, the effective broodstock size (Nb) of these batch spawning units is 33 and when accounting for multiple partners and unequal family sizes (Nbv) is 28. Lastly, the reported results include the successful spawning of female striped bass staged at and beyond 15 Bayless hours, or those that would have previously been considered ineligible for spawning even with the use of exogenous hormone treatment.}, journal={AQUACULTURE}, author={Andersen, L. K. and Clark, R. W. and Hopper, M. S. and Hodson, R. G. and Schilling, J. and Daniels, H. V. and Woods, L. C., III and Kovach, A. I. and Berlinsky, D. L. and Kenter, L. W. and et al.}, year={2021}, month={Feb} }
 @article{andersen_clark_mcginty_hopper_kenter_salger_schilling_hodson_kovach_berlinsky_et al._2021, title={Volitional tank spawning of domestic striped bass (Morone saxatilis) using human chorionic gonadotropin (hCG) and gonadotropin releasing hormone analogue (GnRHa)- induced 'pace-setting' females}, volume={532}, ISSN={["1873-5622"]}, DOI={10.1016/j.aquaculture.2020.735967}, abstractNote={Seventy-one tank spawning trials were conducted to evaluate the efficacy of exogenous hormone compounds and a novel "pace-set" strategy for inducing volitional tank spawning behavior in 5th generation domestic striped bass. Female fish (4.74 ± 0.73 kg; mean ± standard deviation) were treated with human chorionic gonadotropin (hCG; 29 trials), gonadotropin releasing hormone analog (GnRHa; 39 trials) or received no hormone treatment (control; 3 trials). Spawning trials were conducted using single females placed in spawning tanks with two (12 trials) or three (38 trials) males or with paired females placed in spawning tanks with three (4 trials) males. Significant differences in egg production, fry production, hatching rate, and fry/kg female body weight were generally not observed between exogenous hormone treatment groups (alpha = 0.05), with the exception of egg production differing between paired females spawning with three males (Student's t-test, p = 0.0255). However, a trend suggesting that increasing the number of males or females within the tanks improves yield of larvae (fry/kg female body weight) was observed. The untreated control females failed to spawn within 7 days. The pace-set spawning was conducted whereby one female treated with either hCG (7 trials) or GnRHa (7 trials) was placed in a spawning tank with one untreated female and multiple males. The results of these trials show for the first time that a hormone-induced female striped bass can be used to stimulate successful volitional spawning of an untreated female in the same tank with fry/kg female body weight production similar to that of hormone-treated fish. Microsatellite-based parentage of select tank spawns and four additional trials conducted with an increased number of males (19 trials total) showed that female striped bass typically spawn with at least two males; a single pair mating was only observed for one spawning trial. These data allowed for the determination of effective broodstock size (Nb) of each tank spawning trial at between 2.00 and 5.60 when considering all male contributions. The Nb generally increased as the number of males and female fish in the tank increased (from 2.53 for one female and two males to 5.52 for two females and six males). These results indicate that domestic striped bass are promiscuous and will generally reproduce in captivity using tank spawning procedures that allow for a high level of genetic diversity to be retained among the offspring. The pace-set method reduces hormone use and may be applied to commercial striped bass production as well as captive spawning of other fish species.}, journal={AQUACULTURE}, author={Andersen, L. K. and Clark, R. W. and McGinty, A. S. and Hopper, M. S. and Kenter, L. W. and Salger, S. A. and Schilling, J. and Hodson, R. G. and Kovach, A. I. and Berlinsky, D. L. and et al.}, year={2021}, month={Feb} }
 @article{schilling_nepomuceno_planchart_yoder_kelly_muddiman_daniels_hiramatsu_reading_2015, title={Machine learning reveals sex-specific 17β-estradiol-responsive expression patterns in white perch (Morone americana) plasma proteins}, volume={15}, ISSN={1615-9853}, url={http://dx.doi.org/10.1002/pmic.201400606}, DOI={10.1002/pmic.201400606}, abstractNote={With growing abundance and awareness of endocrine disrupting compounds (EDCs) in the environment, there is a need for accurate and reliable detection of EDC exposure. Our objective in the present study was to observe differences within and between the global plasma proteomes of sexually mature male and female white perch (Morone americana) before (Initial Control, IC) and after 17β‐estradiol (E2) induction. Semiquantitative nanoLC‐MS/MS data were analyzed by machine learning support vector machines (SVMs) and by two‐way ANOVA. By ANOVA, the expression levels of 44, 77, and 57 proteins varied significantly by gender, treatment, and the interaction of gender and treatment, respectively. SVMs perfectly classified male and female perch IC and E2‐induced plasma samples using the protein expression data. E2‐induced male and female perch plasma proteomes contained significantly higher levels of the yolk precursors vitellogenin Aa and Ab (VtgAa, VtgAb), as well as latrophilin and seven transmembrane domain‐containing protein 1 (Eltd1) and kininogen 1 (Kng1). This is the first report that Eltd1 and Kng1 may be E2‐responsive proteins in fishes and therefore may be useful indicators of estrogen induction.}, number={15}, journal={PROTEOMICS}, publisher={Wiley}, author={Schilling, Justin and Nepomuceno, Angelito I. and Planchart, Antonio and Yoder, Jeffrey A. and Kelly, Robert M. and Muddiman, David C. and Daniels, Harry V. and Hiramatsu, Naoshi and Reading, Benjamin J.}, year={2015}, month={Jun}, pages={2678–2690} }
 @article{schilling_loziuk_muddiman_daniels_reading_2015, title={Mechanisms of Egg Yolk Formation and Implications on Early Life History of White Perch (Morone americana)}, volume={10}, ISSN={["1932-6203"]}, DOI={10.1371/journal.pone.0143225}, abstractNote={The three white perch (Morone americana) vitellogenins (VtgAa, VtgAb, VtgC) were quantified accurately and precisely in the liver, plasma, and ovary during pre-, early-, mid-, and post-vitellogenic oocyte growth using protein cleavage-isotope dilution mass spectrometry (PC-IDMS). Western blotting generally mirrored the PC-IDMS results. By PC-IDMS, VtgC was quantifiable in pre-vitellogenic ovary tissues and VtgAb was quantifiable in pre-vitellogenic liver tissues however, neither protein was detected by western blotting in these respective tissues at this time point. Immunohistochemistry indicated that VtgC was present within pre-vitellogenic oocytes and localized to lipid droplets within vitellogenic oocytes. Affinity purification coupled to tandem mass spectrometry using highly purified VtgC as a bait protein revealed a single specific interacting protein (Y-box binding protein 2a-like [Ybx2a-like]) that eluted with suramin buffer and confirmed that VtgC does not bind the ovary vitellogenin receptors (LR8 and Lrp13). Western blotting for LR8 and Lrp13 showed that both receptors were expressed during vitellogenesis with LR8 and Lrp13 expression highest in early- and mid-vitellogenesis, respectively. The VtgAa within the ovary peaked during post-vitellogenesis, while VtgAb peaked during early-vitellogenesis in both white perch and the closely related striped bass (M. saxatilis). The VtgC was steadily accumulated by oocytes beginning during pre-vitellogenesis and continued until post-vitellogenesis and its composition varies widely between striped bass and white perch. In striped bass, the VtgC accounted for 26% of the vitellogenin-derived egg yolk, however in the white perch it comprised only 4%. Striped bass larvae have an extended developmental window and these larvae have yolk stores that may enable them to survive in the absence of food for twice as long as white perch after hatch. Thus, the VtgC may play an integral role in providing nutrients to late stage fish larvae prior to the onset of exogenous feeding and its composition in the egg yolk may relate to different early life histories among this diverse group of animals.}, number={11}, journal={PLOS ONE}, author={Schilling, Justin and Loziuk, Philip L. and Muddiman, David C. and Daniels, Harry V. and Reading, Benjamin J.}, year={2015}, month={Nov} }
 @article{hiramatsu_todo_sullivan_schilling_reading_matsubara_ryu_mizuta_luo_nishimiya_et al._2015, title={Ovarian yolk formation in fishes: Molecular mechanisms underlying formation of lipid droplets and vitellogenin-derived yolk proteins}, volume={221}, ISSN={["1095-6840"]}, DOI={10.1016/j.ygcen.2015.01.025}, abstractNote={Fish egg yolk is largely derived from vitellogenins, which are synthesized in the liver, taken up from the maternal circulation by growing oocytes via receptor-mediated endocytosis and enzymatically processed into yolk proteins that are stored in the ooplasm. Lipid droplets are another major component of fish egg yolk, and these are mainly composed of neutral lipids that may originate from maternal plasma lipoproteins. This review aims to briefly summarize our current understanding of the molecular mechanisms underlying yolk formation in fishes. A hypothetical model of oocyte growth is proposed based on recent advances in our knowledge of fish yolk formation.}, journal={GENERAL AND COMPARATIVE ENDOCRINOLOGY}, author={Hiramatsu, Naoshi and Todo, Takashi and Sullivan, Craig V. and Schilling, Justin and Reading, Benjamin J. and Matsubara, Takahiro and Ryu, Yong-Woon and Mizuta, Hiroko and Luo, Wenshu and Nishimiya, Osamu and et al.}, year={2015}, month={Sep}, pages={9–15} }
 @article{schilling_nepomuceno_schaff_muddiman_daniels_reading_2014, title={Compartment Proteomics Analysis of White Perch (Morone americana) Ovary Using Support Vector Machines}, volume={13}, ISSN={["1535-3907"]}, DOI={10.1021/pr401067g}, abstractNote={Compartment proteomics enable broad characterization of target tissues. We employed a simple fractionation method and filter-aided sample preparation (FASP) to characterize the cytosolic and membrane fractions of white perch ovary tissues by semiquantitative tandem mass spectrometry using label-free quantitation based on normalized spectral counts. FASP depletes both low-molecular-weight and high-molecular-weight substances that could interfere with protein digestion and subsequent peptide separation and detection. Membrane proteins are notoriously difficult to characterize due to their amphipathic nature and association with lipids. The simple fractionation we employed effectively revealed an abundance of proteins from mitochondria and other membrane-bounded organelles. We further demonstrate that support vector machines (SVMs) offer categorical classification of proteomics data superior to that of parametric statistical methods such as analysis of variance (ANOVA). Specifically, SVMs were able to perfectly (100% correct) classify samples as either membrane or cytosolic fraction during cross-validation based on the expression of 242 proteins with the highest ANOVA p-values (i.e., those that were not significant for enrichment in either fraction). The white perch ovary cytosolic and membrane proteomes and transcriptome presented in this study can support future investigations into oogenesis and early embryogenesis of white perch and other members of the genus Morone.}, number={3}, journal={JOURNAL OF PROTEOME RESEARCH}, author={Schilling, Justin and Nepomuceno, Angelito and Schaff, Jennifer E. and Muddiman, David C. and Daniels, Harry V. and Reading, Benjamin J.}, year={2014}, month={Mar}, pages={1515–1526} }
 @article{reading_hiramatsu_schilling_molloy_glassbrook_mizuta_luo_baltzegar_williams_todo_et al._2014, title={Lrp13 is a novel vertebrate lipoprotein receptor that binds vitellogenins in teleost fishes}, volume={55}, ISSN={["1539-7262"]}, DOI={10.1194/jlr.m050286}, abstractNote={Transcripts encoding a novel member of the lipoprotein receptor superfamily, termed LDL receptor-related protein (Lrp)13, were sequenced from striped bass (Morone saxatilis) and white perch (Morone americana) ovaries. Receptor proteins were purified from perch ovary membranes by protein-affinity chromatography employing an immobilized mixture of vitellogenins Aa and Ab. RT-PCR revealed lrp13 to be predominantly expressed in striped bass ovary, and in situ hybridization detected lrp13 transcripts in the ooplasm of early secondary growth oocytes. Quantitative RT-PCR confirmed peak lrp13 expression in the ovary during early secondary growth. Quantitative mass spectrometry revealed peak Lrp13 protein levels in striped bass ovary during late-vitellogenesis, and immunohistochemistry localized Lrp13 to the oolemma and zona radiata of vitellogenic oocytes. Previously unreported orthologs of lrp13 were identified in genome sequences of fishes, chicken (Gallus gallus), mouse (Mus musculus), and dog (Canis lupus familiaris). Zebrafish (Danio rerio) and Nile tilapia (Oreochromis niloticus) lrp13 loci are discrete and share genomic synteny. The Lrp13 appears to function as a vitellogenin receptor and may be an important mediator of yolk formation in fishes and other oviparous vertebrates. The presence of lrp13 orthologs in mammals suggests that this lipoprotein receptor is widely distributed among vertebrates, where it may generally play a role in lipoprotein metabolism.}, number={11}, journal={JOURNAL OF LIPID RESEARCH}, author={Reading, Benjamin J. and Hiramatsu, Naoshi and Schilling, Justin and Molloy, Katelyn T. and Glassbrook, Norm and Mizuta, Hiroko and Luo, Wenshu and Baltzegar, David A. and Williams, Valerie N. and Todo, Takashi and et al.}, year={2014}, month={Nov}, pages={2287–2295} }
 @article{williams_reading_amano_hiramatsu_schilling_salger_williams_gross_sullivan_2014, title={Proportional Accumulation of Yolk Proteins Derived From Multiple Vitellogenins is Precisely Regulated During Vitellogenesis in Striped Bass (Morone saxatilis)}, volume={321}, ISSN={["2471-5646"]}, url={http://europepmc.org/abstract/med/24648375}, DOI={10.1002/jez.1859}, abstractNote={ABSTRACT}, number={6}, journal={JOURNAL OF EXPERIMENTAL ZOOLOGY PART A-ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY}, author={Williams, Valerie N. and Reading, Benjamin J. and Amano, Haruna and Hiramatsu, Naoshi and Schilling, Justin and Salger, Scott A. and Williams, Taufika Islam and Gross, Kevin and Sullivan, Craig V.}, year={2014}, month={Jul}, pages={301–315} }