@article{wu_wan_yu_zhang_ducoste_2021, title={The effect of activated sludge floc morphology on the measurement of biomass half-saturation coefficient: a 2D CFD biofilm model-based evaluation and experimental verification}, DOI={10.1016/j.bej.2021.107931}, journal={Biochemical Engineering Journal}, author={Wu, Jun and Wan, Jiaming and Yu, Lianze and Zhang, Miao and Ducoste, Joel J.}, year={2021}, month={Jan} }
 @article{eslamiamirabadi_burton_reyes_ducoste_2020, title={Assessment of alternative herbicides for residential sewer root treatment and their effects on downstream treatment plant nitrification}, volume={258}, DOI={10.1016/j.jenvman.2019.110058}, journal={Journal of Environmental Management}, publisher={Elsevier BV}, author={Eslamiamirabadi, M. and Burton, J.D. and Reyes, III and Ducoste, J.J.}, year={2020}, month={Mar}, pages={110058} }
 @article{hao_barlaz_ducoste_2020, title={Finite-Element Modeling of Landfills to Estimate Heat Generation, Transport, and Accumulation}, DOI={10.1061/(ASCE)GT.1943-5606.0002403}, journal={Journal of Geotechnical and Geoenvironmental Engineering}, author={Hao, Zisu and Barlaz, Morton A. and Ducoste, Joel J.}, year={2020}, month={Dec} }
 @article{wang_hossen_aziz_ducoste_de los reyes_2020, title={Increased loading stress leads to convergence of microbial communities and high methane yields in adapted anaerobic co-digesters}, volume={169}, ISSN={0043-1354}, url={http://dx.doi.org/10.1016/j.watres.2019.115155}, DOI={10.1016/j.watres.2019.115155}, journal={Water Research}, publisher={Elsevier BV}, author={Wang, Ling and Hossen, Elvin H. and Aziz, Tarek N. and Ducoste, Joel J. and de los Reyes, Francis L., III}, year={2020}, month={Feb}, pages={115155} }
 @article{wu_reyes_ducoste_2020, title={Modeling cell aggregate morphology during aerobic granulation in activated sludge processes reveals the combined effect of substrate and shear}, volume={170}, DOI={10.1016/j.watres.2019.115384}, journal={Water Research}, publisher={Elsevier BV}, author={Wu, Jun and Reyes, III and Ducoste, Joel J.}, year={2020}, month={Mar}, pages={115384} }
 @article{kusum_pour-ghaz_ducoste_2020, title={Reducing fat, oil, and grease (FOG) deposits formation and adhesion on sewer collection system structures through the use of fly ash replaced cement-based materials}, volume={186}, DOI={10.1016/j.watres.2020.116304}, journal={Water Research}, publisher={Elsevier BV}, author={Kusum, Samrin A. and Pour-Ghaz, Mohammad and Ducoste, Joel J.}, year={2020}, month={Nov}, pages={116304} }
 @article{wang_lai_karam_reyes_ducoste_2019, title={Dynamic Modeling of Microalgae Growth and Lipid Production under Transient Light and Nitrogen Conditions}, volume={9}, DOI={10.1021/acs.est.9b02908}, number={19}, journal={Environmental Science & Technology}, publisher={American Chemical Society (ACS)}, author={Wang, Diyuan and Lai, Yi-Chun and Karam, Amanda L. and Reyes, III and Ducoste, Joel J.}, year={2019}, month={Oct}, pages={11560–11568} }
 @article{koryachko_matthiadis_haque_muhammad_ducoste_tuck_long_williams_2019, title={Dynamic modelling of the iron deficiency modulated transcriptome response in Arabidopsis thaliana roots}, volume={1}, ISSN={2517-5025}, url={http://dx.doi.org/10.1093/insilicoplants/diz005}, DOI={10.1093/insilicoplants/diz005}, number={1}, journal={in silico Plants}, publisher={Oxford University Press (OUP)}, author={Koryachko, Alexandr and Matthiadis, Anna and Haque, Samiul and Muhammad, Durreshahwar and Ducoste, Joel J and Tuck, James M and Long, Terri A and Williams, Cranos M}, year={2019}, month={Jan} }
 @article{wang_matthews_naik_williams_ducoste_sederoff_chiang_2019, title={Flux modeling for monolignol biosynthesis}, volume={56}, DOI={10.1016/j.copbio.2018.12.003}, journal={Current Opinion in Biotechnology}, publisher={Elsevier BV}, author={Wang, Jack P and Matthews, Megan L and Naik, Punith P and Williams, Cranos M and Ducoste, Joel J and Sederoff, Ronald R and Chiang, Vincent L}, year={2019}, month={Apr}, pages={187–192} }
 @article{monroe_ducoste_berglund_2019, title={Genetic Algorithm–Genetic Programming Approach to Identify Hierarchical Models for Ultraviolet Disinfection Reactors}, volume={145}, ISSN={0733-9372 1943-7870}, url={http://dx.doi.org/10.1061/(ASCE)EE.1943-7870.0001492}, DOI={10.1061/(ASCE)EE.1943-7870.0001492}, number={2}, journal={Journal of Environmental Engineering}, publisher={American Society of Civil Engineers (ASCE)}, author={Monroe, Jacob G. and Ducoste, Joel and Berglund, Emily Z.}, year={2019}, month={Feb}, pages={04018139} }
 @article{weaver_williams_ducoste_reyes_2019, title={Measuring the Shape and Size of Activated Sludge Particles Immobilized in Agar with an Open Source Software Pipeline}, volume={2019}, DOI={10.3791/58963}, number={143}, journal={JOVE-JOURNAL OF VISUALIZED EXPERIMENTS}, author={Weaver, Joseph E. and Williams, Jon C. and Ducoste, J. and Reyes, Francis L.}, year={2019} }
 @article{lai_karam_sederoff_ducoste_de los reyes_2019, title={Relating nitrogen concentration and light intensity to the growth and lipid accumulation of Dunaliella viridis in a photobioreactor}, volume={31}, ISSN={0921-8971 1573-5176}, url={http://dx.doi.org/10.1007/s10811-019-01897-4}, DOI={10.1007/s10811-019-01897-4}, number={6}, journal={Journal of Applied Phycology}, publisher={Springer Science and Business Media LLC}, author={Lai, Yi-Chun and Karam, Amanda L. and Sederoff, Heike W. and Ducoste, Joel J. and de los Reyes, Francis L.}, year={2019}, month={Aug}, pages={3397–3409} }
 @article{blaney_perlinger_bartelt-hunt_kandiah_ducoste_2018, title={Another Grand Challenge: Diversity in Environmental Engineering}, volume={35}, ISSN={1557-9018}, url={http://dx.doi.org/10.1089/ees.2017.0337}, DOI={10.1089/ees.2017.0337}, number={6}, journal={Environmental Engineering Science}, publisher={Mary Ann Liebert Inc}, author={Blaney, Lee and Perlinger, Judith A. and Bartelt-Hunt, Shannon L. and Kandiah, Ramanitharan and Ducoste, Joel J.}, year={2018}, month={Jun}, pages={568–572} }
 @article{naik_wang_sederoff_chiang_williams_ducoste_2018, title={Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis}, volume={13}, ISSN={1932-6203}, url={http://dx.doi.org/10.1371/journal.pone.0193896}, DOI={10.1371/journal.pone.0193896}, number={3}, journal={PLOS ONE}, publisher={Public Library of Science (PLoS)}, author={Naik, Punith and Wang, Jack P. and Sederoff, Ronald and Chiang, Vincent and Williams, Cranos and Ducoste, Joel J.}, editor={Cullen, DanielEditor}, year={2018}, month={Mar}, pages={e0193896} }
 @article{weaver_hong_ducoste_reyes_2018, title={Controlling aerobic biological floc size using Couette-Taylor Bioreactors}, volume={147}, DOI={10.1016/j.watres.2018.09.060}, journal={Water Research}, publisher={Elsevier BV}, author={Weaver, Joseph E. and Hong, Hyunsuk and Ducoste, Joel J. and Reyes, III}, year={2018}, month={Dec}, pages={177–183} }
 @article{karam_reyes_ducoste_2018, title={Development of Photochemical Microsensors for Evaluating Photosynthetic Light Dose Distributions in Microalgal Photobioreactors}, volume={10}, DOI={10.1021/acs.est.8b02056}, number={21}, journal={Environmental Science & Technology}, publisher={American Chemical Society (ACS)}, author={Karam, Amanda L. and Reyes, III and Ducoste, Joel J.}, year={2018}, month={Nov}, pages={12538–12545} }
 @article{wang_matthews_williams_shi_yang_tunlaya-anukit_chen_li_liu_lin_et al._2018, title={Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis}, volume={9}, ISSN={2041-1723}, url={http://dx.doi.org/10.1038/s41467-018-03863-z}, DOI={10.1038/s41467-018-03863-z}, number={1}, journal={Nature Communications}, publisher={Springer Science and Business Media LLC}, author={Wang, Jack P. and Matthews, Megan L. and Williams, Cranos M. and Shi, Rui and Yang, Chenmin and Tunlaya-Anukit, Sermsawat and Chen, Hsi-Chuan and Li, Quanzi and Liu, Jie and Lin, Chien-Yuan and et al.}, year={2018}, month={Apr} }
 @inproceedings{curran_broderick_ducoste_2018, title={Preliminary tests of sensors to detect sewer network blockages}, DOI={10.13031/aim.201801691}, booktitle={ASABE 2018 Annual International Meeting}, author={Curran, T.P. and Broderick, C. and Ducoste, J.}, year={2018} }
 @article{he_de los reyes_ducoste_2017, title={A critical review of fat, oil, and grease (FOG) in sewer collection systems: Challenges and control}, volume={47}, ISSN={1064-3389 1547-6537}, url={http://dx.doi.org/10.1080/10643389.2017.1382282}, DOI={10.1080/10643389.2017.1382282}, number={13}, journal={Critical Reviews in Environmental Science and Technology}, publisher={Informa UK Limited}, author={He, Xia and de los Reyes, Francis L., III and Ducoste, Joel J.}, year={2017}, month={Jul}, pages={1191–1217} }
 @inproceedings{hao_sun_ducoste_barlaz_2017, title={A model to describe heat generation and accumulation at municipal solid waste landfills}, DOI={10.1061/9780784480434.030}, number={276}, booktitle={Geotechnical frontiers 2017: waste containment, barriers, remediation, and sustainable geoengineering}, author={Hao, Z. S. and Sun, M. and Ducoste, J. and Barlaz, M.}, year={2017}, pages={281–288} }
 @article{hao_malyala_dean_ducoste_2017, title={Attenuated total reflectance fourier transform infrared spectroscopy for determination of long chain free fatty acid concentration in oily wastewater using the double wavenumber extrapolation technique}, volume={165}, DOI={10.1016/j.talanta.2017.01.006}, journal={Talanta}, author={Hao, Z. S. and Malyala, D. and Dean, L. and Ducoste, J.}, year={2017}, pages={526–532} }
 @article{karam_mcmillan_lai_de los reyes_sederoff_grunden_ranjithan_levis_ducoste_2017, title={Construction and Setup of a Bench-scale Algal Photosynthetic Bioreactor with Temperature, Light, and pH Monitoring for Kinetic Growth Tests}, volume={6}, ISSN={1940-087X}, url={http://dx.doi.org/10.3791/55545}, DOI={10.3791/55545}, number={124}, journal={Journal of Visualized Experiments}, publisher={MyJove Corporation}, author={Karam, Amanda L. and McMillan, Catherine C. and Lai, Yi-Chun and de los Reyes, Francis L., III and Sederoff, Heike W. and Grunden, Amy M. and Ranjithan, Ranji S. and Levis, James W. and Ducoste, Joel J.}, year={2017}, month={Jun} }
 @article{hao_sun_ducoste_benson_luettich_castaldi_barlaz_2017, title={Heat Generation and Accumulation in Municipal Solid Waste Landfills}, volume={51}, ISSN={0013-936X 1520-5851}, url={http://dx.doi.org/10.1021/acs.est.7b01844}, DOI={10.1021/acs.est.7b01844}, number={21}, journal={Environmental Science & Technology}, publisher={American Chemical Society (ACS)}, author={Hao, Zisu and Sun, Mei and Ducoste, Joel J. and Benson, Craig H. and Luettich, Scott and Castaldi, Marco J. and Barlaz, Morton A.}, year={2017}, month={Oct}, pages={12434–12442} }
 @article{yousefelahiyeh_dominic_ducoste_2017, title={Modeling fats, oil and grease deposit formation and accumulation in sewer collection systems}, volume={19}, DOI={10.2166/hydro.2017.016}, number={3}, journal={Journal of Hydroinformatics}, author={Yousefelahiyeh, R. and Dominic, C. C. S. and Ducoste, J.}, year={2017}, pages={443–455} }
 @inproceedings{sadler_wischer_gordon_wilkerson_tabor_fredericks_ducoste_2017, title={Unintended consequences of a local limits revision: One utility's experience with fats, oils, and grease}, volume={8}, booktitle={Water Environment Federation Technical Exhibition and Conference 2017, WEFTEC 2017}, author={Sadler, M. and Wischer, B. and Gordon, J. and Wilkerson, C. and Tabor, C. and Fredericks, D. and Ducoste, J.}, year={2017}, pages={5522–5534} }
 @inbook{wang_tunlaya-anukit_shi_yeh_chuang_isik_yang_liu_li_loziuk_et al._2016, title={A Proteomic-Based Quantitative Analysis of the Relationship Between Monolignol Biosynthetic Protein Abundance and Lignin Content Using TransgenicPopulus trichocarpa}, volume={5}, ISBN={9781118883303 9781118883266}, url={http://dx.doi.org/10.1002/9781118883303.ch4}, DOI={10.1002/9781118883303.ch4}, booktitle={Recent Advances in Polyphenol Research}, publisher={John Wiley & Sons, Ltd}, author={Wang, Jack P. and Tunlaya-Anukit, Sermsawat and Shi, Rui and Yeh, Ting-Feng and Chuang, Ling and Isik, Fikret and Yang, Chenmin and Liu, Jie and Li, Quanzi and Loziuk, Philip L. and et al.}, year={2016}, month={Dec}, pages={89–107} }
 @article{samstag_ducoste_griborio_nopens_batstone_wicks_saunders_wicklein_kenny_laurent_et al._2016, title={CFD for wastewater treatment: An overview}, volume={74}, DOI={10.2166/wst.2016.249}, number={3}, journal={Water Science and Technology}, author={Samstag, R. W. and Ducoste, J. J. and Griborio, A. and Nopens, I. and Batstone, D. J. and Wicks, J. D. and Saunders, S. and Wicklein, E. A. and Kenny, G. and Laurent, J. and et al.}, year={2016}, pages={549–563} }
 @inproceedings{weaver_ducoste_reyes_2016, title={Fluid shear variation potentially plays a role in aerobic granular sludge formation}, volume={3}, booktitle={WEFTEC 2016 - 89th Water Environment Federation Annual Technical Exhibition and Conference}, author={Weaver, J.E. and Ducoste, J.J. and Reyes, F.L.}, year={2016}, pages={5737–5744} }
 @article{wicklein_batstone_ducoste_laurent_griborio_wicks_saunders_samstag_potier_nopens_et al._2016, title={Good modelling practice in applying computational fluid dynamics for WWTP modelling}, volume={73}, DOI={10.2166/wst.2015.565}, number={5}, journal={Water Science and Technology}, author={Wicklein, E. and Batstone, D. J. and Ducoste, J. and Laurent, J. and Griborio, A. and Wicks, J. and Saunders, S. and Samstag, R. and Potier, O. and Nopens, I. and et al.}, year={2016}, pages={969–982} }
 @article{iasmin_dean_ducoste_2016, title={Quantifying fat, oil, and grease deposit formation kinetics}, volume={88}, DOI={10.1016/j.watres.2015.11.009}, journal={Water Research}, author={Iasmin, M. and Dean, L. O. and Ducoste, J.}, year={2016}, pages={786–795} }
 @article{xiong_fu_singh_ducoste_2016, title={Structural characteristics and development of the cake layer in a dynamic membrane bioreactor}, volume={167}, DOI={10.1016/j.seppur.2016.04.040}, journal={Separation and Purification Technology}, author={Xiong, J. L. and Fu, D. F. and Singh, R. P. and Ducoste, J.}, year={2016}, pages={88–96} }
 @article{blaney_kandiah_ducoste_perlinger_bartelt-hunt_2016, title={Trends in population and demographics of US environmental engineering students and faculty from 2005 to 2013}, volume={33}, DOI={10.1089/ees.2016.0063}, number={8}, journal={Environmental Engineering Science}, author={Blaney, L. and Kandiah, R. and Ducoste, J. and Perlinger, J. A. and Bartelt-Hunt, S. L.}, year={2016}, pages={578–590} }
 @article{koryachko_matthiadis_muhammad_foret_brady_ducoste_tuck_long_williams_2015, title={Clustering and differential alignment algorithm: Identification of early stage regulators in the Arabidopsis thaliana iron deficiency response}, volume={10}, DOI={10.1371/journal.pone.0136591}, number={8}, journal={PLoS One}, author={Koryachko, A. and Matthiadis, A. and Muhammad, D. and Foret, J. and Brady, S. M. and Ducoste, J. and Tuck, J. and Long, T. A. and Williams, C.}, year={2015} }
 @article{koryachko_matthiadis_ducoste_tuck_long_williams_2015, title={Computational approaches to identify regulators of plant stress response using high-throughput gene expression data}, volume={3-4}, ISSN={2214-6628}, url={http://dx.doi.org/10.1016/j.cpb.2015.04.001}, DOI={10.1016/j.cpb.2015.04.001}, journal={Current Plant Biology}, publisher={Elsevier BV}, author={Koryachko, Alexandr and Matthiadis, Anna and Ducoste, Joel J. and Tuck, James and Long, Terri A. and Williams, Cranos}, year={2015}, month={Sep}, pages={20–29} }
 @article{ducoste_alpert_2015, title={Computational fluid dynamics modeling alternatives for UV-initiated advanced oxidation processes}, volume={50}, DOI={10.2166/wqrjc.2014.035}, number={1}, journal={Water Quality Research Journal of Canada}, author={Ducoste, J. and Alpert, S. M.}, year={2015}, pages={4–20} }
 @article{jenny_jasper_simmons_shatalov_ducoste_2015, title={Heuristic optimization of a continuous flow point-of-use UV-LED disinfection reactor using computational fluid dynamics}, volume={83}, DOI={10.1016/j.watres.2015.06.031}, journal={Water Research}, author={Jenny, R. M. and Jasper, M. N. and Simmons, O. D. and Shatalov, M. and Ducoste, J.}, year={2015}, pages={310–318} }
 @inproceedings{wang_hossen_aziz_ducoste_de los reyes_2015, title={How to train your digester - Using step and pulse feeding of grease waste to increase community resistance and methane yield by up to 336%}, volume={3}, booktitle={Proceedings of the Air and Waste Management Association's Annual Conference and Exhibition, AWMA}, author={Wang, L. and Hossen, E.H. and Aziz, T.N. and Ducoste, J.J. and De Los Reyes, F.L.}, year={2015}, pages={1581–1589} }
 @article{nopens_torfs_ducoste_vanrolleghem_gernaey_2015, title={Population balance models: a useful complementary modelling framework for future WWTP modelling}, volume={71}, DOI={10.2166/wst.2014.500}, number={2}, journal={Water Science and Technology}, author={Nopens, I. and Torfs, E. and Ducoste, J. and Vanrolleghem, P. A. and Gernaey, K. V.}, year={2015}, pages={159–167} }
 @inproceedings{wang_hossen_aziz_ducoste_reyes_2015, title={Using 16s metagenomics to determine microbial population shifts associated with a 336% boost in methane yield during anaerobic co-digestion of grease waste}, volume={8}, booktitle={88th Annual Water Environment Federation Technical Exhibition and Conference, WEFTEC 2015}, author={Wang, L. and Hossen, E.H. and Aziz, T.N. and Ducoste, J. and Reyes, F.L.}, year={2015}, pages={6112–6118} }
 @article{laurent_samstag_ducoste_griborio_nopens_batstone_wicks_saunders_potier_2014, title={A protocol for the use of computational fluid dynamics as a supportive tool for wastewater treatment plant modelling}, volume={70}, DOI={10.2166/wst.2014.425}, number={10}, journal={Water Science and Technology}, author={Laurent, J. and Samstag, R. W. and Ducoste, J. and Griborio, A. and Nopens, I. and Batstone, D. J. and Wicks, J. D. and Saunders, S. and Potier, O.}, year={2014}, pages={1575–1584} }
 @article{wang_naik_chen_shi_lin_liu_shuford_li_sun_tunlaya-anukit_et al._2014, title={Complete Proteomic-Based Enzyme Reaction and Inhibition Kinetics Reveal How Monolignol Biosynthetic Enzyme Families Affect Metabolic Flux and Lignin in Populus trichocarpa}, volume={26}, ISSN={1040-4651 1532-298X}, url={http://dx.doi.org/10.1105/tpc.113.120881}, DOI={10.1105/tpc.113.120881}, number={3}, journal={The Plant Cell}, publisher={American Society of Plant Biologists (ASPB)}, author={Wang, Jack P. and Naik, Punith P. and Chen, Hsi-Chuan and Shi, Rui and Lin, Chien-Yuan and Liu, Jie and Shuford, Christopher M. and Li, Quanzi and Sun, Ying-Hsuan and Tunlaya-Anukit, Sermsawat and et al.}, year={2014}, month={Mar}, pages={894–914} }
 @article{fu_kai_singh_ducoste_2014, title={Enhanced Nitrogen Removal by Rice Husk Amended Dynamic Membrane Bioreactors}, volume={140}, ISSN={0733-9372 1943-7870}, url={http://dx.doi.org/10.1061/(ASCE)EE.1943-7870.0000840}, DOI={10.1061/(asce)ee.1943-7870.0000840}, number={11}, journal={Journal of Environmental Engineering}, publisher={American Society of Civil Engineers (ASCE)}, author={Fu, DaFang and Kai, Hong and Singh, Rajendra Prasad and Ducoste, Joel J.}, year={2014}, month={Nov}, pages={04014035} }
 @article{yousefelahiyeh_roya_dominic_sandeep_ducoste_joel_2014, title={FOGISEW: Modeling FOG Deposit Formation in Sewer Collection System}, volume={2014}, DOI={10.2175/193864714816099365}, number={4}, journal={Proceedings of the Water Environment Federation}, publisher={Water Environment Federation}, author={Yousefelahiyeh and Roya and Dominic and Sandeep, Christopher Cyril and Ducoste and Joel, J}, year={2014}, month={Oct}, pages={1–10} }
 @article{iasmin_dean_lappi_ducoste_2014, title={Factors that influence properties of FOG deposits and their formation in sewer collection systems}, volume={49}, DOI={10.1016/j.watres.2013.11.012}, journal={Water Research}, author={Iasmin, M. and Dean, L. O. and Lappi, S. E. and Ducoste, J.}, year={2014}, pages={92–102} }
 @article{jenny_simmons_shatalov_ducoste_2014, title={Modeling a continuous flow ultraviolet Light Emitting Diode reactor using computational fluid dynamics}, volume={116}, DOI={10.1016/j.ces.2014.05.020}, journal={Chemical Engineering Science}, author={Jenny, R. M. and Simmons, O. D. and Shatalov, M. and Ducoste, J.}, year={2014}, pages={524–535} }
 @article{chen_song_wang_lin_ducoste_shuford_liu_li_shi_nepomuceno_et al._2014, title={Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling}, volume={26}, DOI={10.1105/tpc.113.119685}, number={3}, journal={The Plant Cell}, publisher={American Society of Plant Biologists (ASPB)}, author={Chen, Hsi-Chuan and Song, Jina and Wang, Jack P. and Lin, Ying-Chung and Ducoste, Joel and Shuford, Christopher M. and Liu, Jie and Li, Quanzi and Shi, Rui and Nepomuceno, Angelito and et al.}, year={2014}, month={Mar}, pages={876–893} }
 @inproceedings{yousefelahiyeh_dominic_ducoste_2013, title={A numerical method to simulate and assess the formation of Fats, Oils & Grease (FOG) deposits in a sewer collection system}, volume={8}, booktitle={86th Annual Water Environment Federation Technical Exhibition and Conference, WEFTEC 2013}, author={Yousefelahiyeh, R. and Dominic, C.C.S. and Ducoste, J.}, year={2013}, pages={5063–5068} }
 @inproceedings{wang_hossen_aziz_ducoste_bullard_de los reyes_2013, title={Developing Resilient Anaerobic Co-digesting Microbial Communities}, volume={2}, booktitle={86th Annual Water Environment Federation Technical Exhibition and Conference, WEFTEC 2013}, author={Wang, L. and Hossen, E.H. and Aziz, T.N. and Ducoste, J. and Bullard, M. and De Los Reyes, F.L.}, year={2013}, pages={764–770} }
 @article{he_reyes_leming_dean_lappi_ducoste_2013, title={Mechanisms of fat, oil and grease (FOG) deposit formation in sewer lines}, volume={47}, DOI={10.1016/j.watres.2013.05.002}, number={13}, journal={Water Research}, author={He, X. and Reyes, F. L. and Leming, M. L. and Dean, L. O. and Lappi, S. E. and Ducoste, J.}, year={2013}, pages={4451–4459} }
 @article{chen_song_williams_shuford_liu_wang_li_shi_gokce_ducoste_et al._2013, title={Monolignol pathway 4-coumaric acid: Coenzyme a ligases in Populus trichocarpa: Novel specificity, metabolic regulation, and simulation of coenzyme a ligation fluxes}, volume={161}, DOI={10.1104/pp.112.210971}, number={3}, journal={Plant Physiology}, author={Chen, H. C. and Song, J. N. and Williams, C. M. and Shuford, C. M. and Liu, J. and Wang, Jack P. and Li, Q. Z. and Shi, R. and Gokce, E. and Ducoste, J. and et al.}, year={2013}, pages={1501–1516} }
 @article{dominic_szakasits_dean_ducoste_2013, title={Understanding the spatial formation and accumulation of fats, oils and grease deposits in the sewer collection system}, volume={68}, DOI={10.2166/wst.2013.428}, number={8}, journal={Water Science and Technology}, author={Dominic, C. C. S. and Szakasits, M. and Dean, L. O. and Ducoste, J.}, year={2013}, pages={1830–1836} }
 @inproceedings{karami_de los reyes_ducoste_2012, title={Aerobic granulation can be induced by shear variability}, volume={11}, booktitle={WEFTEC 2012 - 85th Annual Technical Exhibition and Conference}, author={Karami, B. and De Los Reyes, F.L. and Ducoste, J.J.}, year={2012}, pages={6921–6926} }
 @article{long_aziz_reyes_ducoste_2012, title={Anaerobic co-digestion of fat, oil, and grease (FOG): A review of gas production and process limitations}, volume={90}, DOI={10.1016/j.psep.2011.10.001}, number={3}, journal={Process Safety and Environmental Protection}, author={Long, J. Hunter and Aziz, Tarek N. and Reyes, Francis L. and Ducoste, J.}, year={2012}, pages={231–245} }
 @inproceedings{wang_aziz_ducoste_de los reyes_2012, title={Anaerobic co-digestion of grease trap waste}, volume={9}, booktitle={WEFTEC 2012 - 85th Annual Technical Exhibition and Conference}, author={Wang, L. and Aziz, T.N. and Ducoste, J. and De Los Reyes, F.L.}, year={2012}, pages={5428–5434} }
 @article{aziz_holt_keener_groninger_ducoste_2012, title={Field Characterization of External Grease Abatement Devices}, volume={84}, DOI={10.2175/106143012x13347678384161}, number={3}, journal={Water Environment Research}, author={Aziz, T. N. and Holt, L. M. and Keener, K. M. and Groninger, J. W. and Ducoste, J.}, year={2012}, pages={237–246} }
 @inproceedings{long_ducoste_aziz_2012, title={Life cycle assessment of grease trap waste co-digestion, land application, and composting}, volume={9}, booktitle={WEFTEC 2012 - 85th Annual Technical Exhibition and Conference}, author={Long, J.H. and Ducoste, J.J. and Aziz, T.N.}, year={2012}, pages={5413–5418} }
 @inproceedings{dominic_szakasits_ducoste_2012, title={Understanding the spatial formation and accumulation of fats, oils and grease deposits in the sewer collection system}, volume={13}, booktitle={WEFTEC 2012 - 85th Annual Technical Exhibition and Conference}, author={Dominic, C.C.S. and Szakasits, M. and Ducoste, J.}, year={2012}, pages={7989–7994} }
 @inproceedings{ducoste_2012, title={Using computational fluid dynamics modeling to help inform assessment of low wavelength inactivation}, booktitle={American Water Works Association Annual Conference and Exposition 2012, ACE 2012}, author={Ducoste, J.}, year={2012}, pages={6437–6451} }
 @article{gallimore_aziz_movahed_ducoste_2011, title={Assessment of Internal and External Grease Interceptor Performance for Removal of Food-Based Fats, Oil, and Grease from Food Service Establishments}, volume={83}, ISSN={1061-4303}, url={http://dx.doi.org/10.2175/106143011x12989211840972}, DOI={10.2175/106143011X12989211840972}, number={9}, journal={Water Environment Research}, publisher={Wiley}, author={Gallimore, Erin and Aziz, Tarek N. and Movahed, Zohreh and Ducoste, Joel}, year={2011}, month={Sep}, pages={882–892} }
 @article{hubbe_hasan_ducoste_2011, title={Cellulosic Substrates for Removal of Pollutants from Aqueous Systems: A Review 1. Metals}, volume={6}, number={2}, journal={Bioresources}, author={Hubbe, M.A. and Hasan, S.H. and Ducoste, J.J.}, year={2011}, pages={2161–2287} }
 @article{he_iasmin_dean_lappi_ducoste_reyes_2011, title={Evidence for fat, oil, and grease (fog) deposit formation mechanisms in sewer lines}, volume={45}, DOI={10.1021/es2001997}, number={10}, journal={Environmental Science & Technology}, author={He, X. and Iasmin, M. and Dean, L. O. and Lappi, S. E. and Ducoste, J. and Reyes, F. L.}, year={2011}, pages={4385–4391} }
 @article{bowker_sain_shatalov_ducoste_2011, title={Microbial UV fluence-response assessment using a novel UV-LED collimated beam system}, volume={45}, DOI={10.1016/j.watres.2010.12.005}, number={5}, journal={Water Research}, author={Bowker, C. and Sain, A. and Shatalov, M. and Ducoste, J.}, year={2011}, pages={2011–2019} }
 @article{vallabh_ducoste_seyam_banks-leel_2011, title={Modeling tortuosity in thin fibrous porous media using computational fluid dynamics}, volume={14}, DOI={10.1615/jpormedia.v14.i9.40}, number={9}, journal={Journal of Porous Media}, author={Vallabh, R. and Ducoste, J. and Seyam, Abdel-Fattah and Banks-Leel, P.}, year={2011}, pages={791–804} }
 @inproceedings{bowker_ducoste_2011, title={Numerical and experimental evaluation of UV light emitting diodes for drinking water disinfection}, booktitle={American Water Works Association Annual Conference and Exposition 2011, ACE 2011}, author={Bowker, C. and Ducoste, J.}, year={2011}, pages={5666–5696} }
 @article{olukanni_ducoste_2011, title={Optimization of waste stabilization pond design for developing nations using computational fluid dynamics}, volume={37}, DOI={10.1016/j.ecoleng.2011.06.003}, number={11}, journal={Ecological Engineering}, author={Olukanni, D. O. and Ducoste, J.}, year={2011}, pages={1878–1888} }
 @article{aziz_holt_keener_groninger_ducoste_2011, title={Performance of grease abatement devices for removal of fat, oil, and grease}, volume={137}, DOI={10.1061/(asce)ee.1943-7870.0000295}, number={1}, journal={Journal of Environmental Engineering (New York, N.Y.)}, author={Aziz, T. N. and Holt, L. M. and Keener, K. M. and Groninger, J. W. and Ducoste, J.}, year={2011}, pages={84–92} }
 @article{santoro_raisee_moghaddami_ducoste_sasges_liberti_notarnicola_2010, title={Modeling hydroxyl radical distribution and trialkyl phosphates oxidation in UV-H2O2 photoreactors using computational fluid dynamics}, volume={44}, DOI={10.1021/es1000962}, number={16}, journal={Environmental Science & Technology}, author={Santoro, D. and Raisee, M. and Moghaddami, M. and Ducoste, J. and Sasges, M. and Liberti, L. and Notarnicola, M.}, year={2010}, pages={6233–6241} }
 @article{alpert_knappe_ducoste_2010, title={Modeling the UV/hydrogen peroxide advanced oxidation process using computational fluid dynamics}, volume={44}, DOI={10.1016/j.watres.2009.12.003}, number={6}, journal={Water Research}, author={Alpert, S. M. and Knappe, D. R. U. and Ducoste, J.}, year={2010}, pages={1797–1808} }
 @inproceedings{alpert_ducoste_2009, title={A CFD modeling protocol for simulating the UV/H<inf>2</inf>O<inf>2</inf> advanced oxidation process}, booktitle={Water Quality Technology Conference and Exposition 2009}, author={Alpert, S.M. and Ducoste, J.J.}, year={2009}, pages={1795–1816} }
 @article{zhao_alpert_ducoste_2009, title={Assessing the impact of upstream hydraulics on the dose distribution of ultraviolet reactors using fluorescence microspheres and computational fluid dynamics}, volume={26}, DOI={10.1089/ees.2008.0139}, number={5}, journal={Environmental Engineering Science}, author={Zhao, X. and Alpert, S. M. and Ducoste, J.}, year={2009}, pages={947–959} }
 @article{nopens_briesen_ducoste_2009, title={Celebrating a milestone in population balance modeling}, volume={64}, DOI={10.1016/j.ces.2009.01.004}, number={4}, journal={Chemical Engineering Science}, author={Nopens, I. and Briesen, H. and Ducoste, J.}, year={2009}, pages={627–627} }
 @inproceedings{zhao_ducoste_2008, title={Analysis of a LPHO UV reactor under multiple upstream elbow configurations using UV sensitive fluorescent microspheres}, booktitle={American Water Works Association - American Water Works Association Association Annual Conference and Exposition, ACE 2008}, author={Zhao, X. and Ducoste, J.}, year={2008}, pages={179–190} }
 @article{richards_ducoste_2008, title={Application of non-biological surrogates for analysis of sequential disinfection continuous flow systems}, volume={57}, DOI={10.2166/aqua.2008.042}, number={4}, journal={Aqua (London, England)}, author={Richards, B. and Ducoste, J.}, year={2008}, pages={225–238} }
 @article{keener_ducoste_holt_2008, title={Properties influencing fat, oil, and grease deposit formation}, volume={80}, DOI={10.2175/193864708X267441}, number={12}, journal={Water Environment Research}, publisher={Wiley}, author={Keener, K. M. and Ducoste, J. and Holt, L. M.}, year={2008}, pages={2241–2246} }
 @inproceedings{richards_ducoste_2007, title={Evaluating sequential disinfection in continuous flow water treatment systems}, booktitle={American Water Works Association - Water Quality Technology Conference and Exposition 2007: Fast Tracks to Water Quality}, author={Richards, B.H. and Ducoste, J.J.}, year={2007}, pages={2074–2081} }
 @inproceedings{alpert_knappe_ducoste_2007, title={Incorporation of micromixing models within CFD simulations describing UV-initiated advanced oxidation processes}, booktitle={American Water Works Association - AWWA Annual Conference and Exposition, ACE 2007}, author={Alpert, S.M. and Knappe, D. and Ducoste, J.}, year={2007}, pages={388–401} }
 @inproceedings{alpert_ducoste_2007, title={Modeling organics degradation with the UV/H2O2 advanced oxidation process using computational fluid dynamics}, booktitle={American Water Works Association - Water Quality Technology Conference and Exposition 2007: Fast Tracks to Water Quality}, author={Alpert, S.M. and Ducoste, J.J.}, year={2007}, pages={3077–3093} }
 @article{liu_wu_linden_ducoste_2007, title={Numerical simulation of UV disinfection reactors: Evaluation of alternative turbulence models}, volume={31}, DOI={10.1016/j.apm.2006.06.004}, number={9}, journal={Applied Mathematical Modelling}, author={Liu, D. and Wu, C. and Linden, K. and Ducoste, J.}, year={2007}, pages={1753–1769} }
 @article{prat_ducoste_2007, title={Simulation of flocculation in stirred vessels - Lagrangian versus Eulerian}, volume={85}, DOI={10.1205/cherd05001}, number={A2}, journal={Chemical Engineering Research & Design}, author={Prat, O. P. and Ducoste, J.}, year={2007}, pages={207–219} }
 @article{bohrerova_mamane_ducoste_linden_2006, title={Comparative inactivation of Bacillus subtilis spores and MS-2 coliphage in a UV reactor: Implications for validation}, volume={132}, DOI={10.1061/(asce)0733-9372(2006)132:12(1554)}, number={12}, journal={Journal of Environmental Engineering (New York, N.Y.)}, author={Bohrerova, Z. and Mamane, H. and Ducoste, J. and Linden, K. G.}, year={2006}, pages={1554–1561} }
 @article{mamane_ducoste_linden_2006, title={Effect of particles on ultraviolet light penetration in natural and engineered systems}, volume={45}, DOI={10.1364/AO.45.001844}, number={8}, journal={Applied Optics}, author={Mamane, H. and Ducoste, J. and Linden, K. G.}, year={2006}, pages={1844–1856} }
 @article{liu_ducoste_2006, title={Impact of turbulent mixing on the performance of a CFD chloramine model}, volume={23}, DOI={10.1089/ees.2006.23.341}, number={2}, journal={Environmental Engineering Science}, author={Liu, Y. J. and Ducoste, J.}, year={2006}, pages={341–356} }
 @article{prat_ducoste_2006, title={Modeling spatial distribution of floc size in turbulent processes using the quadrature method of moment and computational fluid dynamics}, volume={61}, DOI={10.1016/j.ces.2004.11.070}, number={1}, journal={Chemical Engineering Science}, author={Prat, O. P. and Ducoste, J.}, year={2006}, pages={75–86} }
 @article{liu_ducoste_2006, title={Numerical simulation of chloramines formation in turbulent flow using a multi-fluid micromixing model}, volume={21}, DOI={10.1016/j.envsoft.2005.06.007}, number={8}, journal={Environmental Modelling Review & Software: With Environmental Data News}, author={Liu, Y. J. and Ducoste, J.}, year={2006}, pages={1198–1213} }
 @article{liu_ducoste_2006, title={Numerical simulation of chloramines formation in turbulent flow using a multi-fluid micromixing model}, volume={21}, DOI={10.1016/j.chaos.2005.08.200}, number={8}, journal={Environmental Modelling and Software}, author={Liu, Y. and Ducoste, J.}, year={2006}, pages={1198–1213} }
 @article{ducoste_liu_linden_2005, title={Alternative approaches to modeling fluence distribution and microbial inactivation in ultraviolet reactors: Lagrangian versus Eulerian}, volume={131}, DOI={10.1061/(asce)0733-9372(2005)131:10(1393)}, number={10}, journal={Journal of Environmental Engineering (New York, N.Y.)}, author={Ducoste, J. and Liu, D. and Linden, K.}, year={2005}, pages={1393–1403} }
 @article{ducoste_linden_rokjer_liu_2005, title={Assessment of reduction equivalent fluence bias using computational fluid dynamics}, volume={22}, DOI={10.1089/ees.2005.22.615}, number={5}, journal={Environmental Engineering Science}, author={Ducoste, J. and Linden, K. and Rokjer, D. and Liu, D.}, year={2005}, pages={615–628} }
 @article{ducoste_linden_2005, title={Determination of ultraviolet sensor location for sensor set-point monitoring using computational fluid dynamics}, volume={4}, DOI={10.1139/S04-025}, number={SUPPL. 1}, journal={Journal of Environmental Engineering and Science}, author={Ducoste, J. and Linden, K.}, year={2005}, pages={S33–43} }
 @article{bohrerova_bohrer_mohanraj_ducoste_linden_2005, title={Experimental measurements of fluence distribution in a UV reactor using fluorescent microspheres}, volume={39}, DOI={10.1021/es050034c}, number={22}, journal={Environmental Science & Technology}, author={Bohrerova, Z. and Bohrer, G. and Mohanraj, S. M. and Ducoste, J. and Linden, K. G.}, year={2005}, pages={8925–8930} }
 @inproceedings{bohrerova_bohrer_linden_ducoste_mohan mohanraj_2005, title={Experimental measurements of fluence distribution in a UV reactor using fluorescent microspheres}, booktitle={2005 Water Quality Technology Conference Proceedings, WQTC 2005}, author={Bohrerova, Z. and Bohrer, G. and Linden, K.G. and Ducoste, J.J. and Mohan Mohanraj, S.}, year={2005} }
 @article{jin_linden_ducoste_liu_2005, title={Impact of lamp shadowing and reflection on the fluence rate distribution in a multiple low-pressure UV lamp array}, volume={39}, DOI={10.1016/j.watres.2005.04.071}, number={12}, journal={Water Research}, author={Jin, S. S. and Linden, K. G. and Ducoste, J. and Liu, D.}, year={2005}, pages={2711–2721} }
 @article{ormeci_ducoste_linden_2005, title={UV disinfection of chlorinated water: impact on chlorine concentration and UV dose delivery}, volume={54}, DOI={10.2166/aqua.2005.0018}, number={3}, journal={Aqua (London, England)}, author={Ormeci, B. and Ducoste, J. and Linden, K. G.}, year={2005}, pages={189–199} }
 @article{baeza_ducoste_2004, title={A non-biological surrogate for sequential disinfection processes}, volume={38}, DOI={10.1016/j.watres.2004.04.029}, number={14-15}, journal={Water Research}, author={Baeza, C. and Ducoste, J.}, year={2004}, pages={3400–3410} }
 @article{liu_ducoste_jin_linden_2004, title={Evaluation of alternative fluence rate distribution models}, volume={53}, DOI={10.2166/aqua.2004.0031}, number={6}, journal={Aqua (London, England)}, author={Liu, D. and Ducoste, J. and Jin, S. and Linden, K.}, year={2004}, pages={391–408} }
 @inproceedings{peplinski_ducoste_2004, title={Lessons for applying computational fluid dynamics modeling to disinfection clearwells}, volume={111}, DOI={10.1061/40569(2001)22}, booktitle={Bridging the Gap: Meeting the World's Water and Environmental Resources Challenges - Proceedings of the World Water and Environmental Resources Congress 2001}, author={Peplinski, D.K. and Ducoste, J.J.}, year={2004} }
 @article{ortiz_ducoste_2004, title={Modeling low-energy mixers for chemical dispersion in water treatment}, volume={21}, DOI={10.1089/109287504773087408}, number={2}, journal={Environmental Engineering Science}, author={Ortiz, V. and Ducoste, J.}, year={2004}, pages={241–261} }
 @inproceedings{system-wide optimization of wastewater treatment plants using genetic algorithms_2004, volume={111}, DOI={10.1061/40569(2001)106}, booktitle={Bridging the Gap: Meeting the World's Water and Environmental Resources Challenges - Proceedings of the World Water and Environmental Resources Congress 2001}, year={2004} }
 @article{hopkins_ducoste_2003, title={Characterizing flocculation under heterogeneous turbulence}, volume={264}, DOI={10.1016/S0021-9797(03)00446-6}, number={1}, journal={Journal of Colloid and Interface Science}, author={Hopkins, D. C. and Ducoste, J.}, year={2003}, pages={184–194} }
 @article{chaiprapat_cheng_classen_ducoste_liehr_2003, title={Modeling nitrogen transport in duckweed pond for secondary treatment of swine wastewater}, volume={129}, DOI={10.1061/(asce)0733-9372(2003)129:8(731)}, number={8}, journal={Journal of Environmental Engineering (New York, N.Y.)}, author={Chaiprapat, S. and Cheng, J. Y. and Classen, J. J. and Ducoste, J. and Liehr, S. K.}, year={2003}, pages={731–739} }
 @article{ducoste_2002, title={A two-scale PBM for modeling turbulent flocculation in water treatment processes}, volume={57}, DOI={10.1016/S0009-2509(02)00108-2}, number={12}, journal={Chemical Engineering Science}, author={Ducoste, J.}, year={2002}, pages={2157–2168} }
 @inproceedings{ducoste_ortiz_2002, title={Characterization of drinking water treatment chemical mixing performance using CFD}, booktitle={Conference Proceedings - Joint 2002 CSCE/ASCE International Conference on Environmental Engineering - An International Perspective on Environmental Engineering}, author={Ducoste, J.J. and Ortiz, V.}, year={2002}, pages={427–443} }
 @article{peplinski_ducoste_2002, title={Modeling of disinfection contactor hydraulics under uncertainty}, volume={128}, DOI={10.1061/(asce)0733-9372(2002)128:11(1056)}, number={11}, journal={Journal of Environmental Engineering (New York, N.Y.)}, author={Peplinski, D. K. and Ducoste, J.}, year={2002}, pages={1056–1067} }
 @article{doby_loughlin_de los reyes_ducoste_2002, title={Optimization of activated sludge designs using genetic algorithms}, volume={45}, DOI={10.2166/wst.2002.0106}, number={6}, journal={Water Science and Technology}, author={Doby, T. A. and Loughlin, D. H. and De Los Reyes, F. L. and Ducoste, J. J.}, year={2002}, pages={187–198} }
 @book{optimization of activated sludge designs using genetic algorithms_2002, volume={45}, number={6}, journal={Water Science and Technology}, year={2002}, pages={187–198} }
 @article{ducoste_carlson_bellamy_2001, title={The integrated disinfection design framework approach to reactor hydraulics characterization}, volume={50}, DOI={10.2166/aqua.2001.0021}, number={4}, journal={Aqua (London, England)}, author={Ducoste, J. and Carlson, K. and Bellamy, W.}, year={2001}, pages={245–261} }
 @article{bellamy_carlson_pier_ducoste_carlson_2000, title={Determining disinfection needs}, volume={92}, DOI={10.1002/j.1551-8833.2000.tb08943.x}, number={5}, journal={Journal (American Water Works Association)}, author={Bellamy, W. and Carlson, K. and Pier, D. and Ducoste, J. and Carlson, M.}, year={2000}, pages={44–52} }
 @article{ducoste_clark_1999, title={Turbulence in flocculators: Comparison of measurements and CFD simulations}, volume={45}, DOI={10.1002/aic.690450222}, number={2}, journal={AIChE Journal}, author={Ducoste, J. and Clark, M. M.}, year={1999}, pages={432–436} }
 @article{ducoste_clark_1998, title={The influence of tank size and impeller geometry on turbulent flocculation: I. Experimental}, volume={15}, DOI={10.1089/ees.1998.15.215}, number={4}, journal={Environmental Engineering Science}, author={Ducoste, J. and Clark, M. M.}, year={1998}, pages={215–224} }
 @article{ducoste_clark_1998, title={The influence of tank size and impeller geometry on turbulent flocculation: II. Model}, volume={15}, DOI={10.1089/ees.1998.15.225}, number={3}, journal={Environmental Engineering Science}, author={Ducoste, J. and Clark, M. M.}, year={1998}, pages={225–235} }
 @article{ducoste_clark_weetman_1997, title={Turbulence in flocculators: Effects of tank size and impeller type}, volume={43}, ISSN={0001-1541 1547-5905}, url={http://dx.doi.org/10.1002/aic.690430206}, DOI={10.1002/aic.690430206}, number={2}, journal={AIChE Journal}, publisher={Wiley}, author={Ducoste, Joel J. and Clark, Mark M. and Weetman, Ronald J.}, year={1997}, month={Feb}, pages={328–338} }
 @inproceedings{ducoste_derby_1990, title={Docking assembly end effector for a two arm robot}, volume={26}, booktitle={American Society of Mechanical Engineers, Design Engineering Division (Publication) DE}, author={Ducoste, Joel and Derby, Stephen J.}, year={1990}, pages={271–278} }