James B Holland
Also known as: James B. Holland; Jim Holland; James Brendan Holland
Works (189)
Updated: November 19th, 2024 05:06
2024 journal article
Don't BLUP Twice
G3: Genes, Genomes, Genetics.
Ed(s): A. Lipka
Source: ORCID
Added: November 19, 2024
2024 article
Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates
Washburn, J. D., Varela, J. I., Xavier, A., Chen, Q., Ertl, D., Gage, J. L., … Leon, N. (2024, September 20).
open access via doi.org (repository)
Source: ORCID
Added: September 22, 2024
2024 article
Impact of genotype x environment interaction and selection history on genomic prediction in maize (<i>Zea mays</i> L.)
Costa, M., Holland, J. B., Leon, N., & Kaeppler, S. M. (2024, October 15). CROP SCIENCE, Vol. 10.
Sources: ORCID, Web Of Science, NC State University Libraries
Added: October 29, 2024
2024 article
Phenotypic characterization of Southeastern United States open-pollinated maize landraces
Woore, M. S., Flint-Garcia, S. A., & Holland, J. B. (2024, February 15). CROP SCIENCE, Vol. 2.
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science, NC State University Libraries
Added: February 16, 2024
2024 journal article
Prediction of resistance, virulence, and host-by-pathogen interactions using dual-genome prediction models
THEORETICAL AND APPLIED GENETICS, 137(8).
Sources: Web Of Science, NC State University Libraries
Added: August 19, 2024
2023 journal article
2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project
BMC GENOMIC DATA, 24(1).
author keywords: Maize; Genotype by environment; Phenotype; Variable environments; Grain yield
MeSH headings : Phenotype; Zea mays / genetics; Seasons; Genotype; Genome, Plant / genetics
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science, NC State University Libraries
Added: May 26, 2023
2023 article
2020-2021 field seasons of Maize GxE project within the Genomes to Fields Initiative
Lima, D. C., Aviles, A. C., Alpers, R. T., Perkins, A., Schoemaker, D. L., Costa, M., … Leon, N. (2023, September 14). BMC RESEARCH NOTES, Vol. 16.
author keywords: Maize; Genotype by Environment; Grain Yield; Stability; Prediction
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: October 23, 2023
2023 article
Bearded or smooth? Awns improve yield when wheat experiences heat stress during grain fill
DeWitt, N., Lyerly, J., Guedira, M., Holland, J. B., Ward, B. P., Murphy, J. P., … Brown-Guedira, G. (2023, March 1).
UN Sustainable Development Goal Categories
13. Climate Action
(OpenAlex)
Source: ORCID
Added: March 4, 2023
2023 journal article
Bearded or smooth? Awns improve yield when wheat experiences heat stress during grain fill in the southeastern United States
JOURNAL OF EXPERIMENTAL BOTANY, 74(21), 6749–6759.
Ed(s): S. Dreisigacker
author keywords: Awns; abiotic stress; gxe; phenology; reaction norm; wheat
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science; OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 21, 2023
2023 article
Characterization of a Host-Specific Toxic Activity Produced by Bipolaris cookei, Causal Agent of Target Leaf Spot of Sorghum
Samira, R., Lopez, L. F. S., Holland, J., & Balint-Kurti, P. J. (2023, January 16). PHYTOPATHOLOGY, Vol. 1.
author keywords: fungal pathogens; genetics; host-parasite interactions; pathogen effectors
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: September 18, 2023
2023 journal article
Characterization of a host-specific toxic activity produced by Bipolaris cookei, causal agent of Target Leaf Spot of Sorghum
Phytopathology®, 113(7), 1301–1306.
author keywords: fungal pathogens; genetics; host-parasite interactions; pathogen effectors
TL;DR:
A significant correlation between high CF sensitivity and susceptibility to TLS is found, which suggests that the toxin produced in culture may play a role in the pathogenicity of the B. cookei in the field.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries, Crossref, ORCID
Added: July 31, 2023
2023 article
Enhancing adaptation of tropical maize to temperate environments using genomic selection
Choquette, N. E., Weldekidan, T., Brewer, J., Davis, S. B., Wisser, R. J., & Holland, J. B. (2023, June 27). (A. Lipka, Ed.). G3-GENES GENOMES GENETICS, Vol. 6.
Ed(s): A. Lipka
author keywords: exotic germplasm; genomic prediction; GenPred ‌; quantitative genetics; flowering time
TL;DR:
Results suggest that genomic selection in a single off-season generation could increase genetic gains for flowering time by more than 50% compared to direct selection in summer seasons only, reducing the time required to change the population mean to an acceptably adapted floweringTime by about one-third to one-half.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science; OpenAlex)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: June 28, 2023
2023 article
Environment-specific selection alters flowering-time plasticity and results in pervasive pleiotropic responses in maize
Choquette, N. E., Holland, J. B., Weldekidan, T., Drouault, J., Leon, N., Flint-Garcia, S., … Wisser, R. J. (2023, February 25). NEW PHYTOLOGIST, Vol. 2.
author keywords: adaptation; experimental evolution; flowering time; GxE; parallel selection; photoperiod; plasticity; pleiotropy
MeSH headings : Flowers / genetics; Zea mays / genetics; Phenotype; Photoperiod
TL;DR:
These findings show how phenotypic selection can rapidly shift the flowering phenology and plasticity of maize and demonstrate that selecting crops to local conditions can accelerate adaptation to climate change.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science; OpenAlex)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: February 26, 2023
2023 article
Genomes to Fields 2022 Maize genotype by Environment Prediction Competition
Lima, D. C., Washburn, J. D., Varela, J. I., Chen, Q., Gage, J. L., Romay, M. C., … Leon, N. (2023, July 17). BMC RESEARCH NOTES, Vol. 16.
Contributors: D. Lima *, J. Washburn, J. Varela *, Q. Chen n , J. Gage n , M. Romay *, * , D. Ertl
author keywords: Grain yield; Maize; Root mean squared error
MeSH headings : Phenotype; Zea mays / genetics; Genotype; Genome, Plant / genetics; Edible Grain / genetics
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: July 18, 2023
2023 article
Not so local: the population genetics of convergent adaptation in maize and teosinte
Tittes, S., Lorant, A., McGinty, S., Holland, J. B., Jesus Sánchez-González, J., Seetharam, A., … Ross-Ibarra, J. (2023, November 21).
Source: ORCID
Added: February 1, 2024
2023 article
Not so local: the population genetics of convergent adaptation in maize and teosinte
Tittes, S., Lorant, A., McGinty, S., Holland, J. B., Jesus Sánchez-González, J., Seetharam, A., … Ross-Ibarra, J. (2023, November 21).
Source: ORCID
Added: February 1, 2024
2023 article
Variability structure and heritability of germination timing in <i>Capsella bursa-pastoris</i> (L.) Medik. (Shepherd's purse)
Dobbs, A. M., Sousa-Ortega, C., Holland, J. B., Snyder, L. U., & Leon, R. G. (2023, December 9). WEED RESEARCH, Vol. 12.
author keywords: germination variability; interpopulation; intrapopulation; weed
TL;DR:
Maintaining predominantly intrapopulation variability in germination timing appears to be important for long‐term fitness in this species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: January 2, 2024
2022 article
Empirical comparison of genomic and phenotypic selection for resistance to Fusarium ear rot and fumonisin contamination in maize
Butoto, E. N., Brewer, J. C., & Holland, J. B. (2022, July 4). THEORETICAL AND APPLIED GENETICS, Vol. 7.
MeSH headings : Fumonisins; Fusarium / physiology; Genomics / methods; Plant Breeding; Plant Diseases / genetics; Zea mays / genetics
TL;DR:
Practical implementation of GS in individual small-scale breeding programs will require cheaper and faster genotyping methods, and such technological advances will present opportunities to significantly optimize selection and mating schemes for future GS efforts beyond what was able to achieve in this study.
(via Semantic Scholar)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: July 5, 2022
2022 article
Genomic prediction for the Germplasm Enhancement of Maize project
Rogers, A. R., Bian, Y., Krakowsky, M., Peters, D., Turnbull, C., Nelson, P., & Holland, J. B. (2022, October 24). PLANT GENOME, Vol. 10.
MeSH headings : Zea mays / genetics; Plant Breeding; Genomics; Alleles; Edible Grain / genetics
TL;DR:
Based on observed genomic relationships between GEM breeding lines and their tropical ancestors, GS for either yield or moisture would reduce recovery of exotic germplasm only slightly, so using GS models trained within program should be able to more effectively deliver on its mission to broaden the genetic diversity of the U.S. maize crop.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science, NC State University Libraries
Added: October 25, 2022
2022 journal article
Outlook for Implementation of Genomics-Based Selection in Public Cotton Breeding Programs
PLANTS-BASEL, 11(11).
author keywords: cotton breeding; GWAS; genomic prediction; fiber quality; cotton yield
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: May 31, 2022
2022 article
Saving Genetic Diversity in Seed Banks
Holland, J. (2022, August 11).
Source: ORCID
Added: August 17, 2022
2022 article
The History of Maize
Holland, J. (2022, August 11).
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: August 17, 2022
2021 journal article
A conserved genetic architecture among populations of the maize progenitor, teosinte, was radically altered by domestication
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(43).
author keywords: maize; teosinte; domestication; evolution; selection
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: December 13, 2021
2021 journal article
Characterizing the oligogenic architecture of plant growth phenotypes informs genomic selection approaches in a common wheat population
BMC GENOMICS, 22(1).
author keywords: Triticum aestivum; QTL mapping; Genetic architecture; Genomic selection
MeSH headings : Chromosome Mapping; Genomics; Phenotype; Plant Breeding; Quantitative Trait Loci; Triticum / genetics
TL;DR:
A biparental population segregating for major variants for both plant height and flowering time is developed to characterize the genetic architecture of the traits and identify additional novel QTL, and the oligogenic architecture of these traits is demonstrated by the superior trait prediction accuracy of QTL-based prediction models compared to polygenic genomic selection models.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: June 21, 2021
2021 article
Domestication Reshaped the Genetic Basis of Inbreeding Depression in a Maize Landrace Compared to its Wild Relative, Teosinte
Holland, J. B., Samayoa, L. F., Olukolu, B. A., Yang, C. J., Chen, Q., Stetter, M. G., … Doebley, J. F. (2021, September 2). BioRxiv, Vol. 9.
Contributors: L. Samayoa n, B. Olukolu *, C. Yang*, Q. Chen* , M. Stetter *, A. York *, J. Jesus Sanchez-Gonzalez *, J. Glaubitz*
Source: ORCID
Added: September 3, 2021
2021 journal article
Domestication reshaped the genetic basis of inbreeding depression in a maize landrace compared to its wild relative, teosinte
PLOS GENETICS, 17(12).
Contributors: L. Samayoa n, B. Olukolu*, C. Yang *, Q. Chen* , M. Stetter *, A. York *, J. Jesus Sanchez-Gonzalez *, J. Glaubitz*
Ed(s): B. Walsh
MeSH headings : Domestication; Genes, Plant; Genetic Variation / genetics; Inbreeding Depression / genetics; Phenotype; Plant Breeding; Plant Proteins / genetics; Quantitative Trait Loci / genetics; Selection, Genetic / genetics; Zea mays / genetics; Zea mays / growth & development
TL;DR:
This work compared the effects of outcrossing and self-fertilization on 18 traits in a landrace population of maize, which underwent a population bottleneck during domestication, and a neighboring population of its wild relative teosinte, and identified quantitative trait loci representing large-effect rare variants carried by only a single parent, which were more important in teOSinte than maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: February 28, 2022
2021 article
Drought resilience in CIMMYT maize lines adapted to Africa resulting from transpiration sensitivity to vapor pressure deficit and soil drying
Chiango, H., Jafarikouhini, N., Pradhan, D., Figueiredo, A., Silva, J., Sinclair, T. R., & Holland, J. (2021, August 5). JOURNAL OF CROP IMPROVEMENT, Vol. 8.
author keywords: Fraction transpirable soil water; limited transpiration; soil water; stomata; VPD chamber; water conservation
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 16, 2021
2021 article
Effects of artificial inoculation on trait correlations with resistance to Fusarium ear rot and fumonisin contamination in maize
Butoto, E. N., Marino, T. P., & Holland, J. B. (2021, June 18). CROP SCIENCE, Vol. 5.
Sources: ORCID, Web Of Science, NC State University Libraries
Added: May 2, 2021
2021 journal article
Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data
G3-GENES GENOMES GENETICS, 12(2).
Ed(s): A. Lipka
author keywords: genotype-by-environment interactions; multienvironment; genomic prediction; environmental covariates; dominance genetic variance; shared data resource
MeSH headings : Gene-Environment Interaction; Genome, Plant; Genomics; Genotype; Models, Genetic; Phenotype; Plant Breeding; Zea mays / genetics
TL;DR:
Using genomic, yield trial, and environmental data on 1,918 unique hybrids evaluated in 59 environments from the maize Genomes to Fields project, it is determined that a set of 10,153 SNP dominance coefficients and a 5-day temporal window size for summarizing environmental variables were optimal for genomic prediction using only genetic and environmental main effects.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries, ORCID
Added: January 8, 2022
2021 article
Not so local: the population genetics of convergent adaptation in maize and teosinte
Tittes, S., Lorant, A., McGinty, S., Holland, J. B., Jesus Sánchez-González, J., Seetharam, A., … Ross-Ibarra, J. (2021, September 10).
TL;DR:
The results suggest local adaptation in maize and teosinte has an intermediate geographic scale, one that is larger than individual populations, but smaller than the species range.
(via Semantic Scholar)
Source: ORCID
Added: September 11, 2021
2021 journal article
Prediction ability of genome-wide markers in Pinus taeda L. within and between population is affected by relatedness to the training population and trait genetic architecture
G3-GENES GENOMES GENETICS, 12(2).
Ed(s): A. Lipka
author keywords: QTL; loblolly pine; linkage disequilibrium; genomic relationships; cloned progeny tests; cross-validation; GBLUP; GWAS; Genomic Prediction; GenPred; Shared Data Resource
MeSH headings : Genome-Wide Association Study; Genotype; Linkage Disequilibrium; Models, Genetic; Phenotype; Pinus taeda / genetics; Plant Breeding; Polymorphism, Single Nucleotide
TL;DR:
The rapid decay of linkage disequilibrium, large genome size, and inconsistencies in marker-QTL linkage phase suggest that large, diverse training populations are needed for genomic selection in Pinus taeda L.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: December 11, 2021
2021 article
Registration of tropical populations of maize selected in parallel for early flowering time across the United States
Weldekidan, T., Manching, H., Choquette, N., Leon, N., Flint-Garcia, S., Holland, J., … Wisser, R. J. (2021, October 13). JOURNAL OF PLANT REGISTRATIONS, Vol. 10.
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science, NC State University Libraries
Added: October 17, 2021
2021 journal article
The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment
G3-GENES GENOMES GENETICS, 11(2).
author keywords: Genotype-by-environment interaction; multienvironment; environmental covariates; dominance genetic variance
MeSH headings : Gene-Environment Interaction; Genotype; Models, Genetic; Phenotype; Plant Breeding; Zea mays
TL;DR:
To partition trait variation into additive and dominance (main effect) genetic and corresponding genetic- by-environment variances, and to identify specific environmental factors that influence genotype-by-environment interactions, curated and analyzed genotypic and phenotypic data on 1918 maize hybrids and environmental data from 65 testing environments.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: June 10, 2021
2021 article
The potential to breed a low-protein maize for protein-restricted diets
Woore, M. S., Flint-Garcia, S. A., & Holland, J. B. (2021, September 19). CROP SCIENCE, Vol. 61.
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: July 9, 2021
2021 journal article
Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project
FRONTIERS IN GENETICS, 11.
author keywords: genotype-by-environment interaction (G× E); Genomes to Fields (G2F) initiative; general combining ability (GCA); specific combining ability (SCA); hybrid prediction; genomic prediction
TL;DR:
Predictive ability was not improved through inclusion of naive environmental covariates in G×E models, and more research should be conducted to link the observed weather conditions with important physiological aspects in plant development to improve predictive ability through the inclusion of weather data.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: March 29, 2021
2020 journal article
A Genome-Wide Association Study To Understand the Effect of Fusarium verticillioides Infection on Seedlings of a Maize Diversity Panel
G3-GENES GENOMES GENETICS, 10(5), 1685–1696.
Contributors: L. Stagnati *, V. Rahjoo *, L. Samayoa n, * , V. Borrelli*, M. Busconi *, A. Lanubile *, A. Marocco *
author keywords: GWAS; SNPs; Artificial inoculation; Fusarium verticillioides; Maize
MeSH headings : Fusarium; Genome-Wide Association Study; Plant Diseases / genetics; Seedlings / genetics; Zea mays / genetics
TL;DR:
Genome Wide Association Study of traits related to Fusarium seedling rot was carried out and linkage disequilibrium analysis revealed an additional gene not directly observed by GWAS analysis, which could aid to better understand the complex interaction between maize and F. verticillioides.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: June 1, 2020
2020 journal article
Association mapping and genomic prediction for ear rot disease caused by Fusarium verticillioides in a tropical maize germplasm
CROP SCIENCE, 60(6), 2867–2881.
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: December 8, 2020
2020 journal article
Dominance Effects and Functional Enrichments Improve Prediction of Agronomic Traits in Hybrid Maize
GENETICS, 215(1), 215–230.
Contributors: G. Ramstein *, S. Larsson *, J. Cook *, J. Edwards *, E. Ersoz *, S. Flint-Garcia *, C. Gardner *, n
author keywords: dominance; genomic features; functional enrichment; genomic prediction; hybrid maize
MeSH headings : Edible Grain / genetics; Edible Grain / growth & development; Epistasis, Genetic; Evolution, Molecular; Gene-Environment Interaction; Genes, Dominant; Hybridization, Genetic; Models, Genetic; Plant Breeding / methods; Quantitative Trait, Heritable; Zea mays / genetics; Zea mays / growth & development
TL;DR:
This study investigates the relevance of dominance and functional classes of variants in genomic models for agronomic traits in diverse populations of hybrid maize and suggests that dominance and gene annotations improve genomic prediction across diverse populations in hybrid maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: June 1, 2020
2020 article
Eleven biosynthetic genes explain the majority of natural variation for carotenoid levels in maize grain
Diepenbrock, C. H., Ilut, D. C., Magallanes-Lundback, M., Kandianis, C. B., Lipka, A. E., Bradbury, P. J., … DellaPenna, D. (2020, July 15). (Vol. 7). Vol. 7.
TL;DR:
The joint linkage and genome-wide association study in the U.S. maize nested association mapping panel provides the most comprehensive genome-level understanding of the genetic and molecular control of carotenoids in any plant system, and a roadmap to accelerate breeding for provitamin A and other priorityCarotenoid traits in maize grain that should be readily extensible to other cereals.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: January 14, 2021
2020 journal article
Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain
PLANT CELL, 33(4), 882–900.
MeSH headings : Carotenoids / metabolism; Epistasis, Genetic; Genetic Variation; Genome-Wide Association Study; Phenotype; Plant Proteins / genetics; Quantitative Trait Loci; Seeds / genetics; Seeds / metabolism; Zea mays / genetics; Zea mays / metabolism
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: June 2, 2021
2020 article
Genetic variation for plant growth traits in a common wheat population is dominated by known variants and novel QTL
DeWitt, N., Guedira, M., Lauer, E., Murphy, J. P., Marshall, D., Mergoum, M., … Brown-Guedira, G. (2020, December 16).
TL;DR:
A biparental population segregating for major variants for both plant height and flowering time is developed to characterize the genetic architecture of the traits and identify additional novel QTL, and the oligogenic architecture of these traits is demonstrated by the superior trait prediction accuracy of QTL-based prediction models compared to polygenic genomic selection models.
(via Semantic Scholar)
Source: ORCID
Added: March 4, 2023
2020 journal article
Genetic variation for response to mixed triazole and strobilurin application in diverse maize
Agrosystems, Geosciences & Environment, 3(1).
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: December 8, 2020
2020 journal article
Genome-wide association analysis of the strength of the MAMP-elicited defense response and resistance to target leaf spot in sorghum
Scientific Reports, 10(1).
Contributors: R. Samira n, J. Kimball*, L. Samayoa n, n , T. Jamann*, P. Brown *, G. Stacey *, P. Balint-Kurti*
MeSH headings : Bipolaris; Chitin / immunology; Disease Resistance / genetics; Flagellin / immunology; Genome-Wide Association Study; Pathogen-Associated Molecular Pattern Molecules; Plant Diseases / immunology; Plant Diseases / microbiology; Pseudomonas syringae; Sorghum / genetics; Sorghum / immunology; Sorghum / microbiology
TL;DR:
Assessment of variation in the MAMP response in sorghum, to map loci associated with this variation, and to investigate possible connections with variation in quantitative disease resistance found one strong association on chromosome 5 near a previously characterized disease resistance gene.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries, ORCID, Crossref
Added: January 9, 2021
2020 journal article
Genomic prediction for resistance to Fusarium ear rot and fumonisin contamination in maize
CROP SCIENCE, 60(4), 1863–1875.
Contributors: n , T. Marino n, H. Manching * & R. Wisser *
Sources: ORCID, Web Of Science, NC State University Libraries
Added: December 8, 2020
2020 journal article
Heterosis of leaf and rhizosphere microbiomes in field‐grown maize
New Phytologist, 228(3), 1055–1069.
Contributors: M. Wagner *, J. Roberts n, P. Balint-Kurti n & n
author keywords: heterosis; hybridization; maize; microbiome; phyllosphere; rhizosphere
MeSH headings : Hybrid Vigor / genetics; Microbiota / genetics; Plant Leaves / genetics; Rhizosphere; Zea mays / genetics
TL;DR:
The hypothesis that at least some heterotic host traits affect microbiome composition in maize is supported, as a wide range of microbiome features display heterosis within individual crosses, consistent with patterns for non-microbial maize phenotypes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
Sources: ORCID, Crossref, NC State University Libraries
Added: July 13, 2020
2020 journal article
Maize genomes to fields (G2F): 2014-2017 field seasons: Genotype, phenotype, climatic, soil, and inbred ear image datasets
BMC Research Notes, 13(1).
Contributors: B. McFarland *, N. Alkhalifah*, M. Bohn *, J. Bubert *, E. Buckler *, I. Ciampitti *, J. Edwards, D. Ertl *
author keywords: Maize; Genome; Genotype; GBS; G x E; Hybrid; Inbred; Phenotype; Environment; Field metadata
MeSH headings : Datasets as Topic; Genome, Plant / genetics; Genotype; Phenotype; Plant Breeding; Zea mays / genetics
TL;DR:
This report covers the public release of datasets for 2014–2017, which generated large-scale phenotypic, genotypes, and environmental datasets using publicly available inbred lines and hybrids evaluated through a network of collaborators that are part of the G2F's genotype-by-environment (G × E) project.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: December 8, 2020
2020 journal article
Relative utility of agronomic, phenological, and morphological traits for assessing genotype-by-environment interaction in maize inbreds
Crop Science, 60(1), 62–81.
Contributors: C. Falcon*, S. Kaeppler *, E. Spalding *, N. Miller *, N. Haase*, N. AlKhalifah*, M. Bohn *, E. Buckler *
TL;DR:
This is a list of winners and runners-up from the 2016-17 school year in the United States, as well as highlights of the winners and finalists from the 2015-16 school year.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
10. Reduced Inequalities
(OpenAlex)
13. Climate Action
(Web of Science)
Source: ORCID
Added: December 8, 2020
2020 journal article
The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication
PLOS GENETICS, 16(5).
Contributors: Q. Chen* , L. Samayoa n, C. Yang *, P. Bradbury *, B. Olukolu*, M. Neumeyer *, M. Romay *, Q. Sun *
Ed(s): R. Mauricio
MeSH headings : Domestication; Gene Flow; Gene Frequency; Genes, Plant; Genetic Variation; Genetics, Population; Quantitative Trait Loci; Quantitative Trait, Heritable; Selection, Genetic; Zea mays / classification; Zea mays / genetics
TL;DR:
A strongly reduced number of QTL for domestication traits in maize relative to teosinte is observed, consistent with the previously reported depletion of additive variance by selection during domestication, and genomic regions of high recombination explain a disproportionately large proportion of heritable variance both before and after domestication.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: June 22, 2020
2019 journal article
Diverse Components of Resistance to Fusarium verticillioides Infection and Fumonisin Contamination in Four Maize Recombinant Inbred Families
TOXINS, 11(2).
Contributors: L. Morales *, C. Zila n, D. Mejía*, M. Arbelaez*, P. Balint-Kurti n , n , R. Nelson *
author keywords: maize; mycotoxins; fumonisin; disease resistance; morphology
MeSH headings : Disease Resistance / genetics; Fumonisins; Fusarium; Genotype; Phenotype; Plant Diseases / microbiology; Quantitative Trait Loci; Zea mays / genetics; Zea mays / microbiology
TL;DR:
Four recombinant inbred line families from the maize nested associated mapping population were grown and inoculated with F. verticillioides across four environments, and kernels for external and internal infection severity as well as FUM contamination were evaluated.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: March 25, 2019
2019 journal article
Genomic-Wide Association Study of Popping Expansion in Tropical Popcorn and Field Corn Germplasm
CROP SCIENCE, 59(5), 2007–2019.
Contributors: H. Senhorinho*, M. Coan*, T. Marino n, M. Kuki *, R. Pinto *, C. Scapim *, n
TL;DR:
Single nucleotide polymorphism (SNP) markers and putative candidate genes associated with higher popping expansion in a diverse sample of popcorn and field corns relevant to Brazilian breeding programs are identified.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, NC State University Libraries
Added: September 30, 2019
2019 journal article
Optimal Designs for Genomic Selection in Hybrid Crops
MOLECULAR PLANT, 12(3), 390–401.
Contributors: T. Guo *, X. Yu *, X. Li *, H. Zhang *, C. Zhu *, S. Flint-Garcia *, M. McMullen*, n , R. Wisser*, J. Yu *
author keywords: data mining; molecular breeding; genomic relationship; genomic selection; optimal design
MeSH headings : Crops, Agricultural / genetics; Crops, Agricultural / growth & development; Genomics / methods; Genotype; Hybridization, Genetic; Inbreeding; Oryza / genetics; Oryza / growth & development; Phenotype; Plant Breeding; Polymorphism, Single Nucleotide; Triticum / genetics; Triticum / growth & development; Zea mays / genetics; Zea mays / growth & development
TL;DR:
It is demonstrated that effective genomic prediction models can be established with a training set 2%-13% of the size of the whole set, enabling an efficient exploration of enormous inference space of genetic combinations.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: March 18, 2019
2019 journal article
The Genomic Basis for Short-Term Evolution of Environmental Adaptation in Maize
GENETICS, 213(4), 1479–1494.
Contributors: R. Wisser*, Z. Fang n, n , J. Teixeira*, J. Dougherty*, T. Weldekidan *, N. De Leon *, S. Flint-Garcia *
author keywords: recurrent selection; flowering time; genetic diversity; plant breeding; agriculture; climate change
MeSH headings : Adaptation, Physiological / genetics; Chromosome Mapping; Chromosomes, Plant / genetics; Environment; Flowers / genetics; Founder Effect; Gene Frequency / genetics; Genes, Plant; Genetic Variation; Genetics, Population; Genome, Plant; Genomics; Haplotypes / genetics; Phenomics; Phenotype; Selection, Genetic; Time Factors; Zea mays / genetics; Zea mays / physiology
TL;DR:
The results reveal the evolutionary dynamics of a finite polygenic architecture conditioning a capacity for rapid environmental adaptation in maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science; OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: December 30, 2019
2019 journal article
The genetic architecture of teosinte catalyzed and constrained maize domestication
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(12), 5643–5652.
Contributors: C. Yang *, L. Samayoa n, P. Bradbury *, B. Olukolu *, W. Xue *, A. York *, M. Tuholski*, W. Wang *
MeSH headings : Agriculture; Chromosome Mapping / methods; Chromosomes, Plant / physiology; Domestication; Edible Grain / genetics; Evolution, Molecular; Genetics, Population / methods; Genomics; Phenotype; Plant Proteins / genetics; Quantitative Trait Loci; Selection, Genetic / genetics; Zea mays / genetics
TL;DR:
A strong, nonneutral divergence is identified between teosinte and maize landrace genetic variance–covariance matrices (G-matrices), which indicates that the degree of constraint is more unfavorable for further evolution along the same trajectory.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: April 2, 2019
2019 journal article
Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel
THEORETICAL AND APPLIED GENETICS, 132(4), 1247–1261.
Contributors: J. Sarinelli n, J. Murphy n, P. Tyagi n, n , J. Johnson*, M. Mergoum *, R. Mason*, A. Babar *
MeSH headings : Alleles; Genetic Markers; Genetics, Population; Genomics; Genotype; Phenotype; Plant Breeding; Polymorphism, Single Nucleotide / genetics; Principal Component Analysis; Seasons; Selection, Genetic; Triticum / genetics
TL;DR:
The utility of combining unbalanced phenotypic records with genome-wide SNP marker data for predicting the performance of untested genotypes is demonstrated, with the greatest gains coming from combinations of multiple genes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: April 22, 2019
2019 journal article
Validation and Characterization of Maize Multiple Disease Resistance QTL
G3 Genes|Genomes|Genetics, 9(9), 2905–2912.
Contributors: L. Martins n, E. Rucker *, W. Thomason *, R. Wisser*, n & P. Balint-Kurti n
author keywords: Disease; Maize; QTL; Resistance; Genetics of Immunity
MeSH headings : Ascomycota / pathogenicity; Disease Resistance / genetics; Genetic Markers; Plant Diseases / genetics; Plant Diseases / microbiology; Quantitative Trait Loci; Zea mays / genetics; Zea mays / microbiology
TL;DR:
The goal of this study was to perform an independent test of several of the MDR QTL identified to confirm their existence and derive a more precise estimate of allele additive and dominance effects and demonstrates the importance of independently evaluating QTL effects following their initial identification.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: September 23, 2019
2018 journal article
A Genome Wide Association Study Reveals Markers and Genes Associated with Resistance to Fusarium verticillioides Infection of Seedlings in a Maize Diversity Panel
G3-GENES GENOMES GENETICS, 9(2), 571–579.
Contributors: L. Stagnati *, A. Lanubile *, L. Samayoa n, M. Bragalanti*, P. Giorni *, M. Busconi *, n , A. Marocco *
author keywords: Fusarium verticillioides; resistance to seedling disease; Genome Wide Association Studies; Maize; Rolled Towel Assay; SNPs
MeSH headings : Disease Resistance / genetics; Fusarium / pathogenicity; Genes, Plant; Genome-Wide Association Study; Linkage Disequilibrium; Polymorphism, Single Nucleotide; Seedlings / genetics; Seedlings / microbiology; Zea mays / genetics; Zea mays / microbiology
TL;DR:
Functional analysis revealed that many of these genes are directly involved in plant defense against pathogens and stress responses, including transcription factors, chitinase, cytochrome P450, and ubiquitination proteins, and 25 genes were found in high linkage disequilibrium with the associated SNPs identified by GWAS and four of them direct involved in disease resistance.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: April 20, 2020
2018 journal article
Accounting for Genotype-by-Environment Interactions and Residual Genetic Variation in Genomic Selection for Water-Soluble Carbohydrate Concentration in Wheat
G3-GENES GENOMES GENETICS, 8(6), 1909–1919.
Contributors: B. Ovenden *, A. Milgate *, L. Wade *, G. Rebetzke * & n
author keywords: Genomic Selection; residual genetic variation; genotype-by-environment interaction; factor analytic model; relative accuracy; GenPred; Shared Data Resources
MeSH headings : Breeding; Carbohydrates / analysis; Databases, Genetic; Gene-Environment Interaction; Genetic Variation; Genome, Plant; Genotype; Inheritance Patterns / genetics; Models, Genetic; Reproducibility of Results; Selection, Genetic; Solubility; Triticum / genetics; Water / chemistry
TL;DR:
This study evaluated the potential of genomic selection to predict water-soluble carbohydrate concentration (WSCC) in wheat under field conditions and found that GEBVs were not accurate predictors of genotypic values of the extant lines, but should be reliable selection criteria to choose parents for intermating to produce new populations.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2018 journal article
Dissecting Symptomatology and Fumonisin Contamination Produced by Fusarium verticillioides in Maize Ears
PHYTOPATHOLOGY, 108(12), 1475–1485.
Contributors: L. Morales n, T. Marino n, A. Wenndt n, J. Fouts n, n & R. Nelson n
MeSH headings : Fumonisins / analysis; Fusarium / chemistry; Genotype; Plant Diseases / microbiology; Seeds / microbiology; Zea mays / microbiology
TL;DR:
This work demonstrates that the use of diverse modes of inoculation is necessary for combining complementary mechanisms of genetic resistance, kernel bulk density can be used effectively as a proxy for fumonisin levels, and trade-offs may exist between yield potential and resistance to fumolisin contamination.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: December 10, 2018
2018 journal article
Ecogeography of teosinte
PLOS ONE, 13(2).
Contributors: J. De Jesús Sánchez González *, J. Corral *, G. García *, G. Ojeda *, L. De La Cruz Larios *, n , R. Medrano*, G. Romero*
MeSH headings : Ecosystem; Geography; Species Specificity; Zea mays / classification
TL;DR:
Modelling teosinte geographic distribution demonstrated congruence between actual and potential distributions; however, some areas with no occurrences appear to be within the range of adaptation of Teosintes, and field surveys should be prioritized to such regions to accelerate the discovery of unknown populations.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2018 chapter
Harnessing Maize Biodiversity
In Compendium of Plant Genomes.
TL;DR:
This chapter summarizes decades of studies of the genetic diversity of maize populations from different parts of the world, methods used to group maize into informal hierarchies, and how these groupings partition genetic and trait variation.
(via Semantic Scholar)
Source: ORCID
Added: December 8, 2020
2018 journal article
Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets
BMC Research Notes, 11(1).
Contributors: N. Alkhalifah*, D. Campbell *, C. Falcon*, J. Gardiner *, N. Miller *, M. Romay *, R. Walls *, R. Walton*
MeSH headings : Datasets as Topic; Environment; Genome, Plant; Genotype; Inbreeding; Phenotype; Plant Breeding; Seasons; Sequence Analysis, DNA; Zea mays / genetics
TL;DR:
The maize Genomes to Fields (G2F) Initiative is a multi-institutional organization of scientists working to generate and analyze such datasets from existing, publicly available inbred lines and hybrids to help improve crop improvement.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(OpenAlex)
Source: ORCID
Added: December 8, 2020
2018 article
Plant Genetics: Two Steps on the Path to Maize Adaptation
Holland, J. B. (2018, September 24). CURRENT BIOLOGY, Vol. 28, pp. R1098–R1101.
MeSH headings : Acclimatization; Adaptation, Physiological; Flowers; North America; Zea mays
TL;DR:
Two distinct variations in the promoter of a key flowering time gene were selected during the spread of maize from its tropical origin to northern North America.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: October 16, 2018
2017 journal article
Defining the Role of the MADS-Box Gene, Zea Agamous-like1, a Target of Selection During Maize Domestication
JOURNAL OF HEREDITY, 109(3), 333–338.
Contributors: D. Wills*, Z. Fang n, A. York *, n & J. Doebley *
author keywords: flowering time; kernel row number; selection scan
MeSH headings : Alleles; Amino Acid Substitution; Domestication; Flowers / genetics; MADS Domain Proteins / genetics; Models, Genetic; Plant Proteins / genetics; Selection, Genetic; Zea mays / genetics; Zea mays / physiology
TL;DR:
The results suggest that zagl1 may have been under selection during domestication to increase the size of the maize ear with the maize allele conferring larger ears with more kernels.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Enhancing genomic prediction with genome-wide association studies in multiparental maize populations
HEREDITY, 118(6), 585–593.
Contributors: Y. Bian n & n
MeSH headings : Computer Simulation; Genetic Association Studies; Genetics, Population; Genomics / methods; Genotype; Models, Genetic; Multifactorial Inheritance; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
The approach provides a new integrative modeling approach for both reliable gene discovery and robust GP that includes the fixed effects of the most significantly associated SNPs along with the polygenic background for moderately complex but not highly polygenic traits measured in the maize nested association mapping population.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 book
Genetic Data Analysis for Plant and Animal Breeding
TL;DR:
This chapter introduces ASReml stand alone and a brief introduction to AsReml-R in this chapter, which is flexible to fit complex variance structures in mixed models.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Sources: ORCID, Crossref, NC State University Libraries
Added: February 9, 2019
2017 journal article
Genome-Wide Associations for Water-Soluble Carbohydrate Concentration and Relative Maturity in Wheat Using SNP and DArT Marker Arrays
G3-GENES GENOMES GENETICS, 7(8), 2821–2830.
Contributors: B. Ovenden *, A. Milgate *, L. Wade *, G. Rebetzke * & n
author keywords: water-soluble carbohydrates; nonstructural carbohydrates; association analysis; genotype-by-environment interaction; molecular marker
MeSH headings : Carbohydrates / analysis; Gene Frequency / genetics; Gene-Environment Interaction; Genetic Markers; Genome-Wide Association Study; Linkage Disequilibrium / genetics; Polymorphism, Single Nucleotide / genetics; Principal Component Analysis; Solubility; Triticum / genetics; Water / chemistry
TL;DR:
This study uses genome wide association studies (GWAS) to identify candidate loci for water-soluble carbohydrate accumulation—an important drought-avoidance characteristic in wheat—and the markers associated with carbohydrate accumulation may be useful for marker-assisted selection of drought tolerance in wheat.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America
SCIENCE, 357(6350), 512–515.
Contributors: K. Swarts *, R. Gutaker *, B. Benz *, M. Blake *, R. Bukowski*, n , M. Kruse-Peeples, N. Lepak *
MeSH headings : Acclimatization / genetics; Cold Temperature; Flowers / genetics; Flowers / physiology; Genome, Plant; Genomics; Multifactorial Inheritance; North America; Phenotype; Zea mays / genetics; Zea mays / physiology
TL;DR:
Indirectly validated genomic models predicted that Turkey Pen maize was marginally adapted with respect to flowering, as well as short, tillering, and segregating for yellow kernel color, a characteristic of modern temperate maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time
PLOS ONE, 12(1).
Contributors: T. Jamann *, S. Sood*, R. Wisser * & n
MeSH headings : Algorithms; Chromosome Mapping; Computational Biology; Flowers / physiology; Genes, Plant; Genomics; Genotype; Heterozygote; High-Throughput Nucleotide Sequencing; Polymerase Chain Reaction; Polymorphism, Single Nucleotide; Sequence Analysis, DNA; Zea mays / genetics; Zea mays / physiology
TL;DR:
Enrichment of target genome regions coupled with next generation sequencing is a cost-effective strategy to obtain sequence information for loci of interest across many individuals, providing a less expensive approach to evaluating sequence variation at the population scale.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Selection for water-soluble carbohydrate accumulation and investigation of genetic x environment interactions in an elite wheat breeding population
THEORETICAL AND APPLIED GENETICS, 130(11), 2445–2461.
Contributors: B. Ovenden *, A. Milgate, C. Lisle *, L. Wade *, G. Rebetzke * & n
MeSH headings : Carbohydrates / biosynthesis; Droughts; Gene-Environment Interaction; Genotype; Linear Models; Models, Genetic; Phenotype; Plant Breeding; Seeds / growth & development; Selection, Genetic; Triticum / genetics; Triticum / metabolism; Water / physiology
TL;DR:
Water-soluble carbohydrate accumulation can be selected in wheat breeding programs with consideration of genetic × environmental interactions and relationships with other important characteristics such as relative maturity and nitrogen concentration, although the correlation between WSC traits and grain yield is low and inconsistent.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
The effect of artificial selection on phenotypic plasticity in maize
NATURE COMMUNICATIONS, 8(1).
Contributors: J. Gage* , D. Jarquin *, C. Romay *, A. Lorenz *, E. Buckler *, S. Kaeppler *, N. Alkhalifah*, M. Bohn *
MeSH headings : Chimera; Gene Frequency; Genetic Variation; Genome, Plant; Phenotype; Plant Breeding; Polymorphism, Single Nucleotide; Selection, Genetic; Tropical Climate; Zea mays / genetics; Zea mays / physiology
TL;DR:
The authors find maize genomic regions selected for high productivity show reduced contribution to genotype by environment variation and provide evidence for regulatory control of phenotypic stability.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Variation in the Fusarium verticilloides-maize pathosystem and implications for sorting mycotoxin-contaminated maize grain
Phytopathology, 107(2), 11–11.
Source: NC State University Libraries
Added: August 6, 2018
2016 journal article
Genetic Architecture of Domestication-Related Traits in Maize
GENETICS, 204(1), 99-+.
Contributors: S. Xue n, P. Bradbury *, T. Casstevens * & n
author keywords: quantitative trait loci; nested association mapping; genome-wide association study; variance components; Zea mays
MeSH headings : Chromosome Mapping / methods; Chromosomes, Plant; Domestication; Genes, Plant; Genetic Variation; Genetics, Population; Genome-Wide Association Study / methods; Genomics / methods; Genotype; Models, Genetic; Phenotype; Plant Breeding / methods; Polymorphism, Genetic; Quantitative Trait Loci; Selection, Genetic; Zea mays / genetics
TL;DR:
Small-effect polygenic variants are responsible for most of the standing variation for domestication-related traits in maize, and background genomic regions lacking previous evidence for involvement in domestication were associated with more trait variation than expected.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2016 journal article
Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)
Proceedings of the National Academy of Sciences of the United States of America, 114(1), E57–66.
TL;DR:
It is shown that the major leaf shapes of cotton at the L-D1 locus are controlled by a HD-Zip transcription factor most similar to Late Meristem Identity1 (LMI1) gene, and that sub-okra is the ancestral leaf shape of tetraploid cotton and normal is a derived mutant allele that came to predominate and define the leafshape of cultivated cotton.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018
2016 journal article
Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)
Proceedings of the National Academy of Sciences, 114(1), E57–E66.
Contributors: R. Andres n, V. Coneva *, M. Frank *, J. Tuttle n, L. Samayoa n, S. Han n, B. Kaur n, L. Zhu n
author keywords: cotton; leaf shape; okra; gene cloning
MeSH headings : Amino Acid Sequence / genetics; Frameshift Mutation / genetics; Gene Expression Regulation, Plant; Genes, Plant / genetics; Gossypium / genetics; Gossypium / physiology; Plant Leaves / genetics; Plant Leaves / physiology; Promoter Regions, Genetic / genetics; Transcription Factors / genetics
TL;DR:
The results indicate that subokra is the ancestral leaf shape of tetraploid cotton that gave rise to the okra allele and that normal is a derived mutant allele that came to predominate and define the leafshape of cultivated cotton.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science; OpenAlex)
Sources: ORCID, Crossref, NC State University Libraries
Added: January 30, 2019
2016 journal article
Population extremes for assessing trait value and correlated response of genetically complex traits
Field Crops Research, 201, 122–132.
Contributors: G. Rebetzke *, R. Richards * & *
author keywords: Heritability; Selection; Managed environments; Drought; QTL; Quantitative trait loci; Genetic correlation; Indirect selection; NIL
TL;DR:
The power of the tail comparison test was closely related to the heritability of the selection trait and its genotypic correlation with the evaluation trait, demonstrating that the Tail comparison test can appropriately evaluate and rank the potential utility of different selection traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
Source: ORCID
Added: December 8, 2020
2016 journal article
The Genetics of Leaf Flecking in Maize and Its Relationship to Plant Defense and Disease Resistance
Plant Physiology, 172(3), 1787–1803.
Contributors: B. Olukolu n, Y. Bian n, B. De Vries *, W. Tracy *, R. Wisser *, n , P. Balint-Kurti n
MeSH headings : Alleles; Chromosome Mapping; Disease Resistance / genetics; Genetics, Population; Genome-Wide Association Study; Inbreeding; Light; Phenotype; Plant Diseases / genetics; Plant Diseases / immunology; Plant Leaves / genetics; Plant Leaves / radiation effects; Polymorphism, Single Nucleotide / genetics; Quantitative Trait Loci / genetics; Reactive Oxygen Species / metabolism; Seeds / genetics; Zea mays / genetics; Zea mays / radiation effects
TL;DR:
Evidence is presented suggesting that mild flecking could be used as a selection criterion for breeding programs trying to incorporate broad-spectrum disease resistance and positive correlations were found between increased flecking, stronger defense response, increased disease resistance, and increased pest resistance.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2015 journal article
Charles W. Stuber: Maize Geneticist and Pioneer of Marker-Assisted Selection
Plant Breeding Reviews, Vol 39, 39, 1–22.
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018
2015 book
Charles W. Stuber: Maize Geneticist and Pioneer of Marker-Assisted Selection
In Plant Breeding Reviews (Vol. 39, pp. 1–22).
Source: ORCID
Added: December 8, 2020
2015 journal article
Ensemble Learning of QTL Models Improves Prediction of Complex Traits
G3-GENES GENOMES GENETICS, 5(10), 2073–2084.
Contributors: Y. Bian n & n
author keywords: quantitative trait loci; thinning and aggregating; ensemble modeling; Zea mays
MeSH headings : Algorithms; Chromosome Mapping; Genetic Association Studies; Genetic Linkage; Genotype; Models, Genetic; Phenotype; Quantitative Trait Loci; Quantitative Trait, Heritable; Reproducibility of Results; Zea mays / genetics
TL;DR:
An ensemble model combining predictions from TAGGING-assisted QTL and infinitesimal models improved prediction abilities over the component models, indicating some complementarity between model assumptions and suggesting that some trait genetic architectures involve a mixture of a few majorQTL and polygenic effects.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2015 journal article
Genetic Characterization of the North Carolina State University Maize Lines
CROP SCIENCE, 56(1), 259–275.
Contributors: P. Nelson n, M. Krakowsky *, N. Coles *, * , D. Bubeck*, J. Smith *, M. Goodman n
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2015 journal article
Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel
BMC PLANT BIOLOGY, 15(1).
Contributors: L. Samayoa *, R. Malvar *, B. Olukolu n, n & A. Butrón *
author keywords: Candidate genes; Corn borer; Genome-wide association study; Insect resistance; Maize; Mixed linear models; Sesamia nonagrioides
MeSH headings : Animals; Genes, Plant; Genome-Wide Association Study; Moths / physiology; Polymorphism, Single Nucleotide; Zea mays / genetics; Zea mays / parasitology
TL;DR:
Most of the candidate genes found in this study are part of signaling pathways, others act as regulator of expression under biotic stress condition, and a few genes are encoding enzymes with antibiotic effect against insects such as the cystatin1 gene and the defensin proteins.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2015 journal article
Joint-multiple family linkage analysis predicts within-family variation better than single-family analysis of the maize nested association mapping population
HEREDITY, 114(6), 552–563.
Contributors: F. Ogut n, Y. Bian n, P. Bradbury * & *
MeSH headings : Chromosome Mapping / methods; Genetic Linkage; Genetic Markers; Genetics, Population; Models, Genetic; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
The superior predictive ability of joint-family QTL models despite important genetic differences among families suggests that joint- family models capture sufficient smaller effect QTL that is shared across families to compensate for missing some rare large-effect QTL.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2015 article
MAGIC maize: a new resource for plant genetics
Holland, J. B. (2015, September 11). GENOME BIOLOGY, Vol. 16.
MeSH headings : Chromosome Mapping / methods; Quantitative Trait Loci; Zea mays / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2015 journal article
New insight into a complex plant–fungal pathogen interaction
Nature Genetics, 47(2), 101–103.
Contributors: P. Balint-Kurti n & n
MeSH headings : Basidiomycota / physiology; Disease Resistance / genetics; Plant Diseases / immunology; Protein Kinases / genetics; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
A newly identified plant gene confers partial resistance to a fungal pathogen not by preventing initial infection but by limiting its spread through the plant.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2015 chapter book
author keywords: Fine-mapping; Map-based cloning; Genome-wide association study
MeSH headings : Chromosome Mapping / methods; Cloning, Molecular; Crosses, Genetic; Genetic Markers; Genome-Wide Association Study; Genotyping Techniques; High-Throughput Nucleotide Sequencing / methods; Linkage Disequilibrium; Phenotype; Polymerase Chain Reaction / methods; Polymorphism, Single Nucleotide; Quantitative Trait Loci
TL;DR:
Modifications of the traditional biparental mapping population that provide higher resolution of QTL positions, QTL fine-mapping procedures, and genome-wide association studies are discussed, all of which are greatly facilitated by high-throughput sequencing methods.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2015 journal article
Registration of the Ki14 × B73 Recombinant Inbred Mapping Population of Maize
Journal of Plant Registrations, 9(2), 262–265.
Contributors: R. Pratt, n , P. Balint-Kurti n , N. Coles n, J. Zwonitzer n, M. Casey, M. McMullen*
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries, Crossref
Added: August 6, 2018
2015 journal article
Responses to Recurrent Index Selection for Reduced Fusarium Ear Rot and Lodging and for Increased Yield in Maize
CROP SCIENCE, 56(1), 85–94.
Contributors: D. Horne n, M. Eller n & n
TL;DR:
The first demonstration of the indirect effect of selection against Fusarium ear rot on reduc- tion of fumonisin contamination is demonstrated, indicating potential for further genetic gain from selection in this population.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
A Genome-Wide Association Study of the Maize Hypersensitive Defense Response Identifies Genes That Cluster in Related Pathways
PLoS Genetics, 10(8), e1004562.
Contributors: B. Olukolu n, G. Wang n, V. Vontimitta*, B. Venkata *, S. Marla *, J. Ji*, E. Gachomo *, K. Chu*
Ed(s): J. McDowell
MeSH headings : Chromosome Mapping; Disease Resistance / genetics; Genome-Wide Association Study; Linkage Disequilibrium; Plant Diseases / genetics; Plant Proteins / genetics; Polymorphism, Single Nucleotide; Quantitative Trait Loci / genetics; Zea mays / genetics
TL;DR:
This study provides the first system-wide analysis of natural variation that modulates the HR response in plants with low but significant correlations between HR-related traits and several previously-measured disease resistance traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: ORCID, Crossref, NC State University Libraries
Added: October 23, 2019
2014 chapter
Breeding and genetic diversity
In Genetics, Genomics and Breeding of Maize (pp. 14–50).
Source: ORCID
Added: December 8, 2020
2014 chapter
Breeding: Plants, Modern
In Encyclopedia of Agriculture and Food Systems (pp. 187–200).
TL;DR:
Improvements in breeding methods include statistical methods that can combine information across different breeding families and the application of genomic information to improve selection response under certain circumstances.
(via Semantic Scholar)
Source: ORCID
Added: December 8, 2020
2014 journal article
Causes and Consequences of Genetic Background Effects Illuminated by Integrative Genomic Analysis
GENETICS, 196(4), 1321-+.
author keywords: transcriptional profiling; introgression mapping; genetic background effects; mutant expressivity; modifier genes; epistasis
MeSH headings : Animals; Drosophila Proteins / genetics; Drosophila melanogaster / anatomy & histology; Drosophila melanogaster / genetics; Drosophila melanogaster / ultrastructure; Epistasis, Genetic; Gene Expression Regulation; Genes, Modifier; Genome, Insect; Genomics / methods; Inbreeding; Mutation; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Transcription Factors / genetics; Wings, Animal / ultrastructure
TL;DR:
This work generated multiple novel genome-level datasets from a mapping-by-introgression experiment and a tagged RNA gene expression dataset and integrated these data with previously published genomic datasets from expression microarrays and a modifier mutation screen to identify a robust set of candidate loci contributing to the background-dependent effects of mutations in SD.
(via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2014 journal article
Genome-wide association study of Fusarium ear rot disease in the USA maize inbred line collection
BMC PLANT BIOLOGY, 14(1).
Contributors: C. Zila n, F. Ogut n, M. Romay *, C. Gardner *, E. Buckler * & n
author keywords: Association analysis; Disease resistance; Genomic selection; Maize; Quantitative trait
MeSH headings : Disease Resistance / genetics; Fusarium / physiology; Genome-Wide Association Study; Host-Pathogen Interactions / genetics; Plant Diseases; Polymorphism, Single Nucleotide; Zea mays / genetics; Zea mays / immunology
TL;DR:
A genome-wide association study for Fusarium ear rot resistance in a very diverse maize collection identified seven SNP variants each associated with between 1% and 3% of trait variation, which means the value of selection on these SNPs for improving resistance to Fus aquarium ear rot is limited.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
Hallauer's Tuson: a decade of selection for tropical-to-temperate phenological adaptation in maize
HEREDITY, 114(2), 229–240.
Contributors: J. Teixeira*, T. Weldekidan *, N. De Leon *, S. Flint-Garcia *, * , N. Lauter *, S. Murray *, W. Xu *
MeSH headings : Adaptation, Physiological / genetics; Crops, Agricultural / genetics; Flowers / physiology; Gene-Environment Interaction; Genetics, Population; Linear Models; Models, Genetic; Phenotype; Photoperiod; Selection, Genetic; Temperature; Zea mays / genetics; Zea mays / physiology
TL;DR:
Results suggest that adaptation was primarily due to selection on genetic main effects tailored to temperature-dependent plasticity in flowering time, and the original population exhibited a maladaptive syndrome including excessive ear and plant heights along with later flowering; this was reduced in frequency by selection for flowering time.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
Insights into the effects of long-term artificial selection on seed size in maize
Genetics, 198(1), 409-.
Contributors: C. Hirsch *, S. Flint-Garcia *, T. Beissinger *, S. Eichten *, S. Deshpande*, K. Barry *, M. McMullen*, n
MeSH headings : DNA Copy Number Variations; Gene Frequency; Genome, Plant; Models, Genetic; Polymorphism, Single Nucleotide; Quantitative Trait, Heritable; Seeds / anatomy & histology; Seeds / genetics; Selection, Genetic; Zea mays / genetics; Zea mays / growth & development
TL;DR:
In insights into the genetic elements underlying seed-size variation in maize, the number of regions that overlapped with the long-term selection experiment did not exceed that expected by chance, possibly indicating unique sources of variation between the two populations.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: NC State University Libraries, ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
Limits on the reproducibility of marker associations with southern leaf blight resistance in the maize nested association mapping population
BMC GENOMICS, 15(1).
Contributors: Y. Bian n, Q. Yang n, P. Balint-Kurti n , R. Wisser * & n
author keywords: Quantitative trait loci; Nested association mapping; Disease resistance; Genome wide association study; Zea mays
MeSH headings : Alleles; Chromosome Mapping; Chromosomes, Plant / genetics; Disease Resistance / genetics; Genetic Linkage; Genome-Wide Association Study; Genotype; Linkage Disequilibrium; Phenotype; Plant Leaves / genetics; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
The highly polygenic nature of resistance to SLB complicates the identification of causal genes and the updated NAM genetic linkage map improves QTL estimation and, along with a much denser SNP HapMap, greatly increases the likelihood of detecting SNPs in linkage with causal variants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
Protein profiling reveals novel proteins in pollen and pistil of W22 (ga1; Ga1) in maize
Proteomes, 2(2), 258–271.
author keywords: maize; pollen; pistil; gametophytic factors; proteomics
TL;DR:
The identified proteins were generally involved in hydrolase activity, nucleic acid binding and nucleotide binding and provide a valuable clue for the pollen and pistil research in maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: ORCID
Added: December 8, 2020
2014 journal article
The Genetic Architecture Of Maize Height
GENETICS, 196(4), 1337-+.
Contributors: J. Peiffer n, M. Romay *, M. Gore *, S. Flint-Garcia *, Z. Zhang *, M. Millard*, C. Gardner *, M. McMullen*
author keywords: GBLUP; height; maize; plant
MeSH headings : Adaptation, Biological; Chromosome Mapping; Genetic Variation; Genome, Plant; Genome-Wide Association Study; Phenotype; Plant Stems / genetics; Plant Stems / physiology; Quantitative Trait Loci; Reproducibility of Results; Zea mays / genetics; Zea mays / growth & development; Zea mays / physiology
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2014 journal article
Yield effects of two southern leaf blight resistance loci in maize hybrids
Crop Science, 54(3), 882–894.
Contributors: J. Santa-Cruz*, K. Kump*, C. Arellano *, M. Goodman*, M. Krakowsky *, * , P. Balint-Kurti*
TL;DR:
Evidence is presented to suggest that the yield cost is associated with the resistance phenotype rather than with linkage drag, and results suggested that both introgressions might confer a yield cost in the absence of SLB, but only introgression 6A was associated with a statistically significant reduction.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: October 23, 2019
2013 journal article
A Genome-Wide Association Study Reveals Genes Associated with Fusarium Ear Rot Resistance in a Maize Core Diversity Panel
G3-GENES GENOMES GENETICS, 3(11), 2095–2104.
Contributors: C. Zila n, L. Samayoa *, R. Santiago *, A. Butrón * & n
author keywords: association analysis; disease resistance; genotype-by-environment interaction; maize; quantitative trait
MeSH headings : Alleles; Disease Resistance / genetics; Fusarium / pathogenicity; Gene Frequency; Genetic Loci; Genome-Wide Association Study; Genotype; Linkage Disequilibrium; Models, Genetic; Plant Diseases / genetics; Plant Diseases / microbiology; Polymorphism, Single Nucleotide; Zea mays / genetics
TL;DR:
A genome-wide association study to detect allele variants associated with increased resistance to Fusarium ear rot in a maize core diversity panel of 267 inbred lines evaluated in two sets of environments identified three marker loci significantly associated with disease resistance in at least one subset of environments.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2013 journal article
Comprehensive genotyping of the USA national maize inbred seed bank
GENOME BIOLOGY, 14(6).
Contributors: M. Romay *, M. Millard*, J. Glaubitz*, J. Peiffer n, K. Swarts *, T. Casstevens *, R. Elshire *, C. Acharya *
author keywords: Diversity; Genotyping by sequencing; Germplasm; Maize; Public
MeSH headings : Alleles; Biological Specimen Banks; Breeding; Chromosome Mapping; Genetic Markers; Genome, Plant; Genotype; High-Throughput Nucleotide Sequencing; Linkage Disequilibrium; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait, Heritable; Seeds / classification; Seeds / genetics; United States; Zea mays / genetics
TL;DR:
Genotyping by sequencing, a new low-cost, high-throughput sequencing technology was used to genotype 2,815 maize inbred accessions, preserved mostly at the National Plant Germplasm System in the USA, and identified trait associations at SNPs very close to known candidate genes for kernel color, sweet corn, and flowering time.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2013 journal article
Confirming quantitative trait loci for aflatoxin resistance from Mp313E in different genetic backgrounds
Molecular Breeding, 32(1), 15–26.
Contributors: M. Willcox *, G. Davis*, M. Warburton *, G. Windham*, H. Abbas *, J. Betrán, * , W. Williams *
author keywords: Aspergillus flavus; Aflatoxin; Quantitative trait loci; Maize (Zea mays L.); Host plant resistance; Molecular markers; Genetic background
TL;DR:
Many of the quantitative trait loci (QTL) conferring resistance to aflatoxin accumulation from resistant maize donor Mp313E in a background of the susceptible inbred line Va35 are stable over the environments and genetic backgrounds tested, which will make them more valuable in breeding efforts.
(via Semantic Scholar)
Source: ORCID
Added: December 8, 2020
2013 chapter
Mining natural variation for maize improvement: Selection on phenotypes and genes
In Genomics of Plant Genetic Resources: Volume 1. Managing, Sequencing and Mining Genetic Resources (pp. 615–649).
Contributors: S. Sood n, S. Flint-Garcia *, M. Willcox & *
TL;DR:
Genomics provides new opportunities to identify the genes affecting important agronomic traits and to estimate the wide range of allelic effects at such genes, and new approaches to complex trait analysis can leverage high throughput sequencing and genotyping technologies to improve understanding of the genome-wide distribution of allele effects.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: December 8, 2020
2012 journal article
A Connected Set of Genes Associated with Programmed Cell Death Implicated in Controlling the Hypersensitive Response in Maize
GENETICS, 193(2), 609-+.
Contributors: B. Olukolu*, A. Negeri, R. Dhawan, B. Venkata *, P. Sharma *, A. Garg*, E. Gachomo *, S. Marla *
MeSH headings : Alleles; Apoptosis / genetics; Crosses, Genetic; Disease Resistance / genetics; Genes, Plant; Genetic Markers; Genetic Variation; Genome-Wide Association Study; Linear Models; Linkage Disequilibrium; Phenotype; Physical Chromosome Mapping; Polymorphism, Single Nucleotide; Zea mays / genetics; Zea mays / physiology
TL;DR:
An association mapping strategy based on the Mutant Assisted Gene Identification and Characterization approach to identify naturally occurring allelic variants associated with phenotypic variation in HR, and the extent of genome-wide LD is examined.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2012 journal article
Diallel Analysis of Resistance to Fusarium Ear Rot and Fumonisin Contamination in Maize
CROP SCIENCE, 52(5), 2173–2181.
Contributors: H. Hung n & n
TL;DR:
The results suggest that the most effi cient way to improve Fusarium ear rot and fumonisin contamination resistances in hybrids is to evaluate and select among inbred lines before using resources to create and evaluate hybrids.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2012 journal article
Maize HapMap2 identifies extant variation from a genome in flux
Nature Genetics, 44(7), 803–807.
Contributors: J. Chia*, C. Song *, P. Bradbury *, D. Costich *, N. De Leon *, J. Doebley *, R. Elshire *, B. Gaut*
MeSH headings : Alleles; DNA Transposable Elements; Genome Size; Genome, Plant; HapMap Project; Polymorphism, Single Nucleotide; Selection, Genetic; Zea mays / genetics
TL;DR:
It is found that structural variations are pervasive in the Z. mays genome and are enriched at loci associated with important traits and the larger Tripsacum genome can be explained by transposable element abundance rather than an allopolyploid origin.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: December 8, 2020
2012 journal article
Multivariate Mixed Linear Model Analysis of Longitudinal Data: An Information-Rich Statistical Technique for Analyzing Plant Disease Resistance
PHYTOPATHOLOGY, 102(11), 1016–1025.
Contributors: Y. Veturi *, K. Kump, E. Walsh, O. Ott*, J. Poland, J. Kolkman, P. Balint-Kurti* , * , R. Wisser
MeSH headings : Ascomycota / immunology; Ascomycota / physiology; Computer Simulation; Data Interpretation, Statistical; Disease Resistance; Genotype; Linear Models; Longitudinal Studies; Multivariate Analysis; Plant Diseases / immunology; Plant Diseases / microbiology; Research Design; Software; Zea mays / immunology; Zea mays / microbiology
TL;DR:
To aid in the application of multivariate MLM analysis of longitudinal data on disease resistance, annotated program syntax for model fitting is provided for the software ASReml.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2012 journal article
Quantitative Trait Loci Affecting Oil Content, Oil Composition, and Other Agronomically Important Traits in Oat
PLANT GENOME, 5(3), 164–175.
Contributors: B. Hizbai*, K. Gardner*, C. Wight *, R. Dhanda, S. Molnar*, D. Johnson *, J. Frégeau-Reid*, W. Yan *
TL;DR:
The results suggest the presence of pleiotropic effects on oil‐related traits through influences at specific nodes of the oil synthesis pathway in a population of 146 recombinant inbred lines.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2012 journal article
ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(28), E1913–E1921.
Contributors: H. Hung n, L. Shannon *, F. Tian *, P. Bradbury *, C. Chen *, S. Flint-Garcia *, M. McMullen*, D. Ware *
author keywords: genetic diversity; quantitative trait locus
MeSH headings : Alleles; Chromosome Mapping / methods; Chromosomes, Plant; Genes, Plant; Genetic Variation; Genome-Wide Association Study; Genotype; Haplotypes; Mexico; Models, Genetic; Phenotype; Photoperiod; Plant Proteins / genetics; Plant Proteins / metabolism; Quantitative Trait Loci; Repressor Proteins / genetics; Repressor Proteins / metabolism; Time Factors; Zea mays / genetics
TL;DR:
Indigenous farmers of the Americas were remarkably successful at selecting on genetic variation at key genes affecting the photoperiod response to create maize varieties adapted to vastly diverse environments despite the hindrance of the geographic axis of the Americans and the complex genetic control of flowering time.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
A novel genetic framework for studying response to artificial selection
PLANT GENETIC RESOURCES-CHARACTERIZATION AND UTILIZATION, 9(2), 281–283.
Contributors: R. Wisser *, P. Balint-Kurti n & n
author keywords: adaptation; association mapping; plant breeding, quantitative trait; selection
TL;DR:
A new experimental genetic framework is proposed allowing for the identification of trait-specific genomic loci underlying population improvement and the characterization of allelic frequency responses at those loci by employing a sampling scheme for recurrently selected populations.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
Allelic Effect Variation at Key Photoperiod Response Quantitative Trait Loci in Maize
CROP SCIENCE, 51(3), 1036–1049.
Contributors: N. Coles n, C. Zila n & n
TL;DR:
Evaluation of four sets of tropical maize inbreds under long daylengths demonstrated that all four QTL have signifi cant effects on fl owering time or height in these lines, but the functional allelic effects varied substantially across the tropical donor lines.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
Comparison of Conventional, Modified Single Seed Descent, and Doubled Haploid Breeding Methods for Maize Inbred Line Development Using Germplasm Enhancement of Maize Breeding Crosses
CROP SCIENCE, 51(4), 1534–1543.
Contributors: M. Jumbo*, T. Weldekidan *, n & J. Hawk*
TL;DR:
The MSSD method may be an effective and efficient alternative to both pedigree and DH methods for developing high performing lines from the GEM breeding crosses as it requires relatively fewer resources.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
Distinct Genetic Architectures for Male and Female Inflorescence Traits of Maize
PLOS GENETICS, 7(11).
Contributors: P. Brown *, N. Upadyayula*, G. Mahone*, F. Tian *, P. Bradbury *, S. Myles *, n , S. Flint-Garcia *
MeSH headings : Biological Evolution; Chromosome Mapping; Crosses, Genetic; Flowers / genetics; Genetic Linkage; Genetic Pleiotropy; Genome-Wide Association Study; Inflorescence / genetics; Phenotype; Plant Leaves / genetics; Polymorphism, Single Nucleotide; Quantitative Trait Loci / genetics; Sex Characteristics; Zea mays / anatomy & histology; Zea mays / genetics
TL;DR:
The results support the hypothesis that genetic architecture is a function of trait stability over evolutionary time, since the traits that changed most during the relatively recent domestication of maize have the largest effects.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels
PLANT PHYSIOLOGY, 158(2), 824–834.
Contributors: J. Cook n, M. McMullen n, n , F. Tian n, P. Bradbury n, J. Ross-Ibarra n, E. Buckler n, S. Flint-Garcia n
MeSH headings : Genes, Plant; Genetic Linkage; Genome-Wide Association Study; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
Joint-linkage quantitative trait locus mapping and genome-wide association studies for kernel starch, protein, and oil in the maize nested association mapping population, composed of 25 recombinant inbred line families derived from diverse inbred lines, revealed that the genetic architecture of kernel composition traits is controlled by 21–26 quantitative traits loci.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
Genome-wide association study of leaf architecture in the maize nested association mapping population
NATURE GENETICS, 43(2), 159–U113.
Contributors: F. Tian *, P. Bradbury *, P. Brown *, H. Hung n, Q. Sun *, S. Flint-Garcia*, T. Rocheford *, M. McMullen*, n , E. Buckler *
MeSH headings : Chromosome Mapping; Chromosomes, Plant; Epistasis, Genetic; Genes, Plant; Genetic Linkage; Genetic Variation; Genome-Wide Association Study; Plant Leaves / metabolism; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
Overall, GWAS results show that variations at the liguleless genes have contributed to more upright leaves, and the use of GWAS with specially designed mapping populations is effective in uncovering the basis of key agronomic traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
Genome-wide association study of quantitative resistance to southern leaf blight in the maize nested association mapping population
NATURE GENETICS, 43(2), 163–U120.
Contributors: K. Kump n, P. Bradbury *, R. Wisser*, E. Buckler *, A. Belcher n, M. Oropeza-Rosas n, J. Zwonitzer n, S. Kresovich *
MeSH headings : Chromosome Mapping / methods; Chromosomes, Plant / genetics; Crosses, Genetic; Epistasis, Genetic; Genes, Plant; Genome-Wide Association Study; Genotype; Haplotypes; Immunity, Innate; Physical Chromosome Mapping; Plant Diseases / genetics; Plant Leaves / metabolism; Polymorphism, Single Nucleotide; Zea mays / genetics
TL;DR:
Limited linkage disequilibrium was observed around some SNPs associated with SLB resistance, indicating that the maize NAM population enables high-resolution mapping of some genome regions.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
Genomic localization of the maize cross-incompatibility gene, Gametophyte factor 1 (ga1)
Maydica, 56(4), 379–387. http://www.scopus.com/inward/record.url?eid=2-s2.0-84857675839&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2011 journal article
Mapping QTL controlling southern leaf blight resistance by joint analysis of three related recombinant inbred line populations
Crop Science, 51(4), 1571–1579.
Contributors: A. Negeri n, N. Coles n, n & P. Balint-Kurti n
TL;DR:
Quantitative trait loci for resistance to SLB disease caused by C. heterostrophus race O were identifi ed in three maize recombinant inbred populations assessed in two environments and suggested that the perceived effect on SLB resistance at these QTL may have been mediated through an effect on fl owering time.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: ORCID, NC State University Libraries
Added: October 23, 2019
2011 journal article
Multivariate analysis of maize disease resistances suggests a pleiotropic genetic basis and implicates a GST gene
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(18), 7339–7344.
Contributors: R. Wisser*, J. Kolkman *, M. Patzoldt*, * , J. Yu *, M. Krakowsky*, R. Nelson *, P. Balint-Kurti*
author keywords: multivariate mixed model; pleiotropy; quantitative disease resistance; Zea mays (maize)
MeSH headings : Analysis of Variance; Base Sequence; DNA Primers / genetics; Genetic Association Studies; Genetic Pleiotropy / genetics; Genetic Variation; Glutathione Transferase / genetics; Immunity, Innate / genetics; Linkage Disequilibrium; Models, Biological; Molecular Sequence Data; Multivariate Analysis; Plant Diseases / genetics; Plant Diseases / microbiology; Sequence Analysis, DNA; Zea mays
TL;DR:
This work extended the framework of structured association mapping to allow for the analysis of correlated complex traits and the identification of pleiotropic genes to address the hypothesis that naturally occurring allelic variation conditions MDR exists in maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
QTL controlling masculinization of ear tips in a maize (Zea mays L.) intraspecific cross
G3: Genes, Genomes, Genetics, 1(5), 337–341.
Contributors: n & N. Coles n
author keywords: maize recombinant inbred lines; floral sex determination; quantitative trait loci
TL;DR:
Alleles conferring photoperiod sensitivity for delayed flowering at these QTL seem to enhance the production of staminate ear tips under long daylengths.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: December 8, 2020
2011 journal article
Seed Dormancy in Mexican Teosinte
CROP SCIENCE, 51(5), 2056–2066.
Contributors: A. López*, J. González *, J. Corral *, L. Larios *, F. Santacruz-Ruvalcaba *, C. Hernández *, n
TL;DR:
The primary objective of this study was to characterize the variation in seed germination of the wild species of the genus Zea that currently grow in Mexico and to relate this variation to their ecological zones of adaptation.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
THREE NEW TEOSINTES (ZEA SPP., POACEAE) FROM MEXICO
AMERICAN JOURNAL OF BOTANY, 98(9), 1537–1548.
Contributors: J. Sánchez*, L. La Cruz*, V. Vidal*, J. Ron*, S. Taba*, F. Santacruz-Ruvalcaba *, S. Sood n, n
author keywords: maize; Poaceae; teosinte; Zea
MeSH headings : Chromosomes, Plant; Genetic Markers; Mexico; Phylogeny; Zea mays / classification; Zea mays / genetics
TL;DR:
Evidence from multiple independent sources suggests placement of the three new populations of teosinte as distinct entities within section Luxuriantes of the genus Zea, however, more extensive DNA marker or sequence data is required to resolve the taxonomy of this genus.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2011 journal article
The relationship between parental genetic or phenotypic divergence and progeny variation in the maize nested association mapping population
HEREDITY, 108(5), 490–499.
Contributors: H. Hung n, C. Browne *, K. Guill*, N. Coles n, M. Eller n, A. Garcia*, N. Lepak*, S. Melia-Hancock*
author keywords: genetic variance; heritability; QTL mapping
MeSH headings : Biological Evolution; Genetic Variation; Genotype; Inbreeding; Phenotype; Polymorphism, Single Nucleotide; Predictive Value of Tests; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
The choice of promising segregating populations can be based on selecting phenotypically diverse parents, congruent with models of genetic architecture that posit numerous genes affecting quantitative traits, each segregating for allelic series with dispersal of allelic effects across diverse genetic material.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2010 chapter
Dedication: Major M. Goodman: Maize Geneticist and Breeder
In Plant Breeding Reviews (Vol. 33, pp. 1–29).
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: December 8, 2020
2010 article
Increased Food and Ecosystem Security via Perennial Grains
Glover, J. D., Reganold, J. P., Bell, L. W., Borevitz, J., Brummer, E. C., Buckler, E. S., … Xu, Y. (2010, June 25). SCIENCE, Vol. 328, pp. 1638–1639.
Contributors: J. Glover*, J. Reganold *, L. Bell *, J. Borevitz *, E. Brummer *, E. Buckler *, C. Cox*, T. Cox*
MeSH headings : Agriculture / methods; Breeding; Crops, Agricultural / economics; Crops, Agricultural / genetics; Crops, Agricultural / growth & development; Crops, Agricultural / physiology; Ecosystem; Edible Grain / economics; Edible Grain / genetics; Edible Grain / growth & development; Edible Grain / physiology; Food Supply; Sunlight
TL;DR:
To ensure food and ecosystem security, farmers need more options to produce grains under different, generally less favorable circumstances than those under which increases in food security were achieved this past century.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2010 journal article
Response
Science, 330(6000), 33–34. http://www.scopus.com/inward/record.url?eid=2-s2.0-77957375418&partnerID=MN8TOARS
Contributors: J. Glover, J. Reganold, L. Bell, J. Borevitz, E. Brummer, E. Buckler, C. Cox, T. Cox
Source: ORCID
Added: December 8, 2020
2010 journal article
Selection for Reduced Fusarium Ear Rot and Fumonisin Content in Advanced Backcross Maize Lines and Their Topeross Hybrids
CROP SCIENCE, 50(6), 2249–2260.
TL;DR:
Backcross breeding of the more resistant but unadapted inbred GE440 for four generations to the susceptible but agronomi- cally elite commercial inbred FR1064 to determine which QTL demon- strated allele frequency shifts due to selection.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 journal article
A heritability-adjusted GGE biplot for test environment evaluation
EUPHYTICA, 171(3), 355–369.
Contributors: W. Yan * & n
author keywords: Biplot; Genotype-by-environment interaction; Heritability; Test environment evaluation
TL;DR:
It is demonstrated that the vector length of an environment in the HA-GGE biplot approximates the square root heritability within the environment and that the cosine of the angle between the vectors of two environments approximate the genetic correlation between them.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 journal article
Direct mapping of density response in a population of B73 x Mo17 recombinant inbred lines of maize (Zea Mays L.)
HEREDITY, 104(6), 583–599.
Contributors: M. Gonzalo, n , T. Vyn * & L. McIntyre *
author keywords: epistasis; density response; yield; QTL mapping
MeSH headings : Chromosome Mapping; Chromosomes, Plant / genetics; Crosses, Genetic; Inbreeding; Quantitative Trait Loci; Zea mays / genetics
TL;DR:
An independent experiment to examine the stability of QTL for barrenness in a new environment clearly showed that the multilocus QTL were stable across environments in their differential response to density.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 journal article
Genetic Control of Photoperiod Sensitivity in Maize Revealed by Joint Multiple Population Analysis
GENETICS, 184(3), 799–U301.
Contributors: N. Coles n, M. McMullen*, P. Balint-Kurti n , R. Pratt * & n
MeSH headings : Adaptation, Physiological / genetics; Alleles; Crosses, Genetic; Genes, Plant / genetics; Genetic Variation; Genome-Wide Association Study; Photoperiod; Zea mays / genetics
TL;DR:
Four key genome regions controlling photoperiod response across populations were identified, referred to as ZmPR1–4, and functional allelic differences within these regions among phenotypically similar founders suggest distinct evolutionary trajectories forPhotoperiod adaptation in maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 journal article
Genetic properties of the maize nested association mapping population
Science, 325(5941), 737–740.
Contributors: M. McMullen*, S. Kresovich *, H. Villeda*, P. Bradbury *, H. Li *, Q. Sun *, S. Flint-Garcia *, J. Thornsberry*
MeSH headings : Alleles; Centromere / genetics; Chromosome Mapping; Chromosomes, Plant / genetics; Crosses, Genetic; Epistasis, Genetic; Flowers / genetics; Flowers / growth & development; Genetic Variation; Genome, Plant; Heterozygote; Hybrid Vigor; Inbreeding; Linkage Disequilibrium; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Quantitative Trait, Heritable; Recombination, Genetic; Selection, Genetic; Zea mays / classification; Zea mays / genetics; Zea mays / physiology
TL;DR:
Maize genetic diversity has been used to understand the molecular basis of phenotypic variation and to improve agricultural efficiency and sustainability and it is suggested that selection in inbred lines has been less efficient in these regions because of reduced recombination frequency.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: NC State University Libraries, ORCID, NC State University Libraries
Added: August 6, 2018
2009 chapter
Harnessing quantitative genetics and genomics for understanding and improving complex traits in crops
In Drought Frontiers in Rice: Crop Improvement for Increased Rainfed Production (pp. 123–136).
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: December 8, 2020
2009 journal article
Mapping resistance quantitative trait loci for three foliar diseases in a maize recombinant inbred line population - Evidence for multiple disease resistance?
Phytopathology, 100(1), 72–79.
Contributors: J. Zwonitzer n, N. Coles, M. Krakowsky, C. Arellano, * , M. McMullen, R. Pratt, P. Balint-Kurti*
MeSH headings : Fungi / growth & development; Immunity, Innate / genetics; Plant Diseases / genetics; Plant Diseases / microbiology; Quantitative Trait Loci / genetics; Quantitative Trait Loci / physiology; Zea mays / genetics; Zea mays / microbiology; Zea mays / physiology
TL;DR:
The objectives of this study were to identify quantitative trait loci for resistance to these diseases in a maize recombinant inbred line (RIL) population derived from a cross between maize lines Ki14 and B73, and to evaluate the evidence for the presence of genes or loci conferring multiple disease resistance (MDR).
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: ORCID
Added: October 23, 2019
2009 journal article
Quantitative Trait Loci and Epistasis for Oat Winter-Hardiness Component Traits
CROP SCIENCE, 49(6), 1989–1998.
Contributors: D. Wooten n, D. Livingston III, H. Lyerly n, n , E. Jellen *, D. Marshall n, J. Murphy n
TL;DR:
This study identified quantitative trait loci (QTL) for winter-hardiness component traits in a recombinant inbred line population derived from a cross between the winter-tender cultivar Fulghum and theWinter-hardy cultivar Norline.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2009 journal article
The Genetic Architecture of Maize Flowering Time
SCIENCE, 325(5941), 714–718.
Contributors: E. Buckler *, n , P. Bradbury *, C. Acharya *, P. Brown *, C. Browne *, E. Ersoz *, S. Flint-Garcia *
MeSH headings : Alleles; Chromosome Mapping; Chromosomes, Plant / genetics; Epistasis, Genetic; Flowers / genetics; Flowers / growth & development; Gene Frequency; Genes, Plant; Genetic Variation; Geography; Inbreeding; Phenotype; Polymorphism, Single Nucleotide; Quantitative Trait Loci; Quantitative Trait, Heritable; Recombination, Genetic; Time Factors; Zea mays / genetics; Zea mays / growth & development; Zea mays / physiology
TL;DR:
A simple additive model accurately predicts flowering time for maize, in contrast to the genetic architecture observed in the selfing plant species rice and Arabidopsis.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2008 journal article
A Comparison of leaf appearance rates among teosinte, maize landraces and modern maize
Maydica, 53(2), 117–123.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
A comparison of leaf appearance rates among teosinte, maize landraces and modern maize
Maydica, 53(2), 117–123. http://www.scopus.com/inward/record.url?eid=2-s2.0-57849127135&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2008 journal article
BREEDING FOR IMPROVED RESISTANCE TO FUMONISIN CONTAMINATION IN MAIZE
TOXIN REVIEWS, 27(3-4), 371–389.
author keywords: Quantitative Trait Loci; fumonisin; Fusarium verticillioides
TL;DR:
Maize genetics and breeding studies are guiding strategies to improve resistance to fumonisin accumulation, and field and laboratory techniques have led to the identification of resistant maize lines and facilitated genetic analysis of resistance to ear rot and fumotonin accumulation.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2008 journal article
Climatic adaptation and ecological descriptors of 42 Mexican maize races
CROP SCIENCE, 48(4), 1502–1512.
Contributors: J. Ruiz Corral *, N. Durán Puga, J. Sánchez González, J. Ron Parra, D. González Eguiarte, J. Holland n, G. Medina García *
TL;DR:
These climatic ranges of maize surpass those from its closest relative, teosinte (Z. mays ssp. parviglumis Iltis and Doebley), indicating that maize has evolved adaptability beyond the environmental range in which ancestral maize was first domesticated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science; OpenAlex)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2008 journal article
Genetic design and statistical power of nested association mapping in maize
GENETICS, 178(1), 539–551.
Contributors: J. Yu *, J. Holland n, M. McMullen* & E. Buckler *
MeSH headings : Chromosome Mapping; Genetic Markers; Genome, Plant / genetics; Genotype; Inbreeding; Models, Genetic; Polymorphism, Genetic; Quantitative Trait Loci / genetics; Zea mays / genetics
TL;DR:
The genetic and statistical properties of the nested association mapping (NAM) design currently being implemented in maize is investigated to dissect the genetic basis of complex quantitative traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2008 journal article
Grain yield and fusarium ear rot of maize hybrids developed from lines with varying levels of resistance
Maydica, 53(1-4), 231–237. http://www.scopus.com/inward/record.url?eid=2-s2.0-77956931980&partnerID=MN8TOARS
Contributors: M. Eller, L. Robertson-Hoyt, G. Payne &
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2008 journal article
Molecular characterization of maize inbreds with expired US plant variety protection
CROP SCIENCE, 48(5), 1673–1685.
Contributors: P. Nelson n, N. Coles n, n , D. Bubeck*, S. Smith* & M. Goodman n
TL;DR:
The genetic diversity across subsets of ex-PVPA lines are no more diverse than the public set evaluated here and all alleles present in the ex- PVPA inbreds are also found in public temperate maize germplasm.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2008 journal article
Quantitative trait loci and epistasis for crown freezing tolerance in the 'Kanota' x 'Ogle' hexaploid oat mapping population
CROP SCIENCE, 48(1), 149–157.
Contributors: D. Wooten n, D. Livingston III, J. Holland n, D. Marshall n & J. Murphy n
TL;DR:
The results confi rm the importance of the chromosomes involved in the reciprocal 7C-17 translocation in controlling winter hardiness component traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2007 review
Genetic architecture of complex traits in plants
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 10(2), 156–161.
Contributors: J. Holland n
MeSH headings : Base Sequence; Epistasis, Genetic; Hybrid Vigor / genetics; Plants / genetics; Quantitative Trait Loci / genetics; Quantitative Trait, Heritable
TL;DR:
Recent advances in experimental and statistical procedures, including the simultaneous analysis of QTL that segregate in diverse germplasm, should improve genetic architecture studies and improve understanding of plant evolution and the design of crop improvement strategies.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2007 journal article
Genotypic correlation and multivariate QTL analyses for cell wall components and resistance to stalk tunneling by the European corn borer in maize
CROP SCIENCE, 47(2), 485–490.
Contributors: M. Krakowsky *, M. Lee* & J. Holland n
TL;DR:
Negative genotypic correlations between ECBST and CWC concentrations were observed at some loci, and resistance to ECB-ST may be associated with a subset of the QTL observed for CWCs and ADF in particular.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2007 journal article
Johnsongrass (Sorghum halepense) pollen expresses ACCase target-site resistance
WEED TECHNOLOGY, 21(2), 384–388.
Contributors: I. Burke*, J. Holland*, J. Burton*, A. York* & J. Wilcut*
author keywords: pollen assays
TL;DR:
Three studies were conducted to develop pollen tests for the screening of acetyl coenzyme-A carboxylase (ACCase) target-site resistance in a biotype of johnsongrass, finding pollen from the susceptible biotype was strongly inhibited by increasing concentrations of clethodim.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2007 journal article
Mapping reciprocal effects and interactions with plant density stress in Zea mays L.
HEREDITY, 99(1), 14–30.
Contributors: M. Gonzalo, T. Vyn *, J. Holland n & L. McIntyre *
author keywords: maternal effects; epigenetics; stress response; parent-of-origin effects
MeSH headings : Genetic Variation; Inbreeding; Phenotype; Zea mays / genetics
TL;DR:
It was shown that differences in maternal parents, endosperm DNA and maternally transmitted factors collectively influence reciprocal effects early during the season, and that their influence diluted at later stages, and evidence that parent-of-origin effects in the sporophyte DNA existed at all stages and played an important role in establishing differences between reciprocal backcrosses at later developmental stages was found.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2007 journal article
Precise mapping of quantitative trait loci for resistance to southern leaf blight, caused by Cochliobolus heterostrophus race O, and flowering time using advanced intercross maize lines
GENETICS, 176(1), 645–657.
Contributors: P. Balint-Kurti n , J. Zwonitzer n, R. Wisser n, M. Carson*, M. Oropeza-Rosas n, J. Holland n, S. Szalma n
MeSH headings : Ascomycota / physiology; Chromosome Mapping; Chromosomes, Plant / genetics; Crosses, Genetic; Flowers / microbiology; Flowers / physiology; Immunity, Innate; Models, Biological; Plant Diseases / genetics; Plant Diseases / immunology; Quantitative Trait Loci / genetics; Time Factors; Zea mays / genetics; Zea mays / microbiology
TL;DR:
The intermated B73 × Mo17 (IBM) population, an advanced intercross recombinant inbred line population derived from a cross between the maize lines B73 and Mo17, was evaluated in four environments for resistance to southern leaf blight disease.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 6, 2018
2007 journal article
QTL mapping with near-isogenic lines in maize
THEORETICAL AND APPLIED GENETICS, 114(7), 1211–1228.
Contributors: S. Szalma n, B. Hostert*, J. LeDeaux*, C. Stuber n & J. Holland n
MeSH headings : Alleles; Chromosome Mapping; Chromosomes, Plant; Crosses, Genetic; Genes, Plant; Genetic Markers; Genotype; Models, Genetic; Phenotype; Polymorphism, Restriction Fragment Length; Quantitative Trait Loci; Time Factors; Zea mays / genetics
TL;DR:
QTLs affecting days to anthesis, days to silking, and anthesis-silk interval were detected in both inbreds and hybrids in both environments, and different sets of QTLs were detected across environments, demonstrating the genetic complexity of flowering time.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2007 journal article
Relationships among resistances to Fusarium and Aspergillus ear rots and contamination by fumonisin and aflatoxin in maize
PHYTOPATHOLOGY, 97(3), 311–317.
Contributors: L. Robertson-Hoyt*, J. Betrán, G. Payne*, D. White, T. Isakeit, C. Maragos, T. Molnár, J. Holland*
author keywords: corn
TL;DR:
The results suggest that at least some of the genes involved in resistance to ear rots and mycotoxin contamination are identical or genetically linked.
(via Semantic Scholar)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2007 journal article
Relationships of resistance to Fusarium ear rot and fumonisin contamination with agronomic performance of maize
CROP SCIENCE, 47(5), 1770–1778.
Contributors: L. Robertson-Hoyt n, C. Kleinschmidt*, D. White*, G. Payne n, C. Maragos * & J. Holland n
TL;DR:
Examination of the relationship between disease resistance and agronomic utility in a maize population created by backcrossing the highly resistant donor line to the susceptible but commercially successful recurrent parent line indicates that QTL can contribute in opposite directions to the overall genetic correlations between traits and that some trait correlations arise in the absence of detectable QTL effects.
(via Semantic Scholar)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2006 journal article
Erratum: Heritabilities and correlations of fusarium ear rot resistance and fumonisin contamination resistance in two maize populations (Crop Science 46, 1 (353-361))
Crop Science, 46(3).
Source: ORCID
Added: December 8, 2020
2006 journal article
Estimating genotypic correlations and their standard errors using multivariate restricted maximum likelihood estimation with SAS Proc MIXED
CROP SCIENCE, 46(2), 642–654.
Contributors: J. Holland n
TL;DR:
This paper illustrates the use of Proc MIXED of the SAS system to implement REML estimation of genotypic and phenotypic correlations and a method to obtain approximate parametric estimates of the sampling variances of the correlation estimates is presented.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2006 journal article
Gains from selection during the development of semiexotic inbred lines from Latin American maize accessions
Maydica, 51(1), 15–23. http://www.scopus.com/inward/record.url?eid=2-s2.0-33646828357&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2006 journal article
Heritabilities and correlations of fusarium ear rot resistance and fumonisin contamination resistance in two maize populations
CROP SCIENCE, 46(1), 353–361.
Contributors: L. Robertson n, C. Kleinschmidt*, D. White*, G. Payne n, C. Maragos * & J. Holland n
TL;DR:
Moderate to high heritabilities and strong genetic correlations between ear rot and fumonisin concentration suggest that selection for reduced ear rot should frequently identify lines with reduced fumoniin concentration.
(via Semantic Scholar)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2006 journal article
Identification of quantitative trait loci for resistance to southern leaf blight and days to anthesis in a maize recombinant inbred line population
PHYTOPATHOLOGY, 96(10), 1067–1071.
Contributors: P. Balint-Kurti* , M. Krakowsky, M. Jines*, L. Robertson*, T. Molnár, M. Goodman*, J. Holland*
author keywords: flowering; Helminthosporium
TL;DR:
A recombinant inbred line population derived from a cross between the maize lines NC300 (resistant) and B104 (susceptible) was evaluated for resistance to southern leaf blight (SLB) disease caused by Cochliobolus heterostrophus race O and for days to anthesis in four environments.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 6, 2018
2006 journal article
Mapping density response in maize: A direct approach for testing genotype and treatment interactions
GENETICS, 173(1), 331–348.
Contributors: M. Gonzalo*, T. Vyn *, J. Holland n & L. McIntyre *
MeSH headings : Chromosome Mapping / methods; Genetics, Population; Genotype; Hybridization, Genetic; Likelihood Functions; Models, Genetic; Phenotype; Zea mays / genetics
TL;DR:
A general approach based upon mixed models is used to analyze data from eight segmental inbred lines in a B73 background and their crosses to the unrelated parent Mo17 (hybrids) and identifies segments that respond differently to density depending upon the inbreeding level.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2006 journal article
Mapping resistance to Southern rust in a tropical by temperate maize recombinant inbred topcross population
THEORETICAL AND APPLIED GENETICS, 114(4), 659–667.
Contributors: M. Jines n, P. Balint-Kurti n , L. Robertson-Hoyt n, T. Molnar, J. Holland n & M. Goodman n
MeSH headings : Basidiomycota; Chromosome Mapping; Crosses, Genetic; Environment; Immunity, Innate / genetics; Microsatellite Repeats / genetics; Plant Diseases / genetics; Plant Diseases / microbiology; Quantitative Trait Loci; Tropical Climate; Zea mays
TL;DR:
Resistance was simply inherited in this population and the major QTL is likely a dominant resistant gene that is independent of plant maturity, which would be desirable if the resistance alleles maintained resistance across environments while not increasing plant maturity.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science, NC State University Libraries
Added: August 6, 2018
2006 journal article
Panzea: a database and resource for molecular and functional diversity in the maize genome.
Nucleic Acids Research., 34(Database issue). http://www.scopus.com/inward/record.url?eid=2-s2.0-33644874840&partnerID=MN8TOARS
Contributors: W. Zhao, P. Canaran, R. Jurkuta, T. Fulton, J. Glaubitz, E. Buckler, J. Doebley, B. Gaut
Source: ORCID
Added: December 8, 2020
2006 journal article
QTL mapping for fusarium ear rot and fumonisin contamination resistance in two maize populations
Crop Science, 46(4), 1734–1743.
Contributors: L. Robertson-Hoyt n, M. Jines n, P. Balint-Kurti n , C. Kleinschmidt*, D. White*, G. Payne n, C. Maragos *, T. Molnár, n
TL;DR:
QTL mapping was used to study the genetic relationships between resistances to ear rot and fumonisin contamination and to investigate consistency of QTL acrosspopulations to identify quantitative trait loci (QTL) for resistance to Fusarium ear rot, and appeared consistent for both traits across both populations.
(via Semantic Scholar)
Source: ORCID
Added: October 23, 2019
2006 journal article
Responses to selection for partial resistance to crown rust in oat
CROP SCIENCE, 46(3), 1260–1265.
Contributors: J. Long *, J. Holland n, G. Munkvold * & J. Jannink *
TL;DR:
The results suggested that index selection could increase levels of crown rust resistance, grain yield, and seed weight simultaneously, and predicted and realized heritabilities for area under disease progress curve (AUDPC) were consistent with predicted herit abilities.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2006 book
Theoretical and Biological Foundations of Plant Breeding
In Plant Breeding: The Arnel R. Hallauer International Symposium (pp. 127–140).
UN Sustainable Development Goal Categories
2. Zero Hunger
(OpenAlex)
Source: ORCID
Added: December 8, 2020
2005 journal article
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
Nature Genetics, 38(2), 203–208.
Contributors: J. Yu *, G. Pressoir *, W. Briggs*, I. Bi*, M. Yamasaki *, J. Doebley *, M. McMullen*, B. Gaut
MeSH headings : Gene Expression; Genetic Techniques; Genetic Variation; Heredity / genetics; Humans; Models, Genetic; Phenotype; Quantitative Trait, Heritable; Research Design; Zea mays / genetics
TL;DR:
A unified mixed-model approach to account for multiple levels of relatedness simultaneously as detected by random genetic markers is developed and provides a powerful complement to currently available methods for association mapping.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science, Crossref
Added: August 6, 2018
2004 journal article
Recovery of exotic alleles in semiexotic maize inbreds derived from crosses between Latin American accessions and a temperate line
Theoretical and Applied Genetics, 109(3), 609–617. http://www.scopus.com/inward/record.url?eid=2-s2.0-4344701300&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2003 journal article
Combining ability of a tropical-derived maize population with isogenic BT and conventional testers
Maydica, 48(1), 1–8. http://www.scopus.com/inward/record.url?eid=2-s2.0-0038419797&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2003 journal article
Genome-wide genetic diversity among components does not cause cultivar blend responses
Crop Science, 43(5), 1618–1627. http://www.scopus.com/inward/record.url?eid=2-s2.0-0141459295&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2003 journal article
Testcross Performance of Semiexotic Inbred Lines Derived from Latin American Maize Accessions
Crop Science, 43(6), 2272–2278. http://www.scopus.com/inward/record.url?eid=2-s2.0-0242653940&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2002 journal article
Breeding perennial grain crops
Critical Reviews in Plant Sciences, 21(2), 59–91. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036216289&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2002 journal article
Correlated responses to selection for greater β-glucan content in two oat populations
Crop Science, 42(3), 730–738. http://www.scopus.com/inward/record.url?eid=2-s2.0-0036235335&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2002 journal article
Genomic regions controlling vernalization and photoperiod responses in oat
THEORETICAL AND APPLIED GENETICS, 105(1), 113–126.
Contributors: J. Holland n, V. Portyanko*, D. Hoffman & M. Lee*
author keywords: Avena; flowering; mapping; QTLs
TL;DR:
Comparative mapping between oat and other grasses will facilitate molecular analysis of vernalization response in oat, and found a concordance of flowering-time QTLs, segregation distortion, and complex genetic linkages related to chromosomal rearrangements in hexaploid oat.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2001 journal article
A linkage map of hexaploid oat based on grass anchor DNA clones and its relationship to other oat maps
GENOME, 44(2), 249–265.
Contributors: V. Portyanko, D. Hoffman, M. Lee & J. Holland*
author keywords: Avena; linkage map; comparative mapping; homoeology
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2001 journal article
A restriction fragment length polymorphism based linkage map of a diploid Avena recombinant inbred line population
Genome, 44(2), 192–204.
author keywords: grasses; oat; genetic mapping; homoeology
Source: ORCID
Added: December 8, 2020
2001 journal article
Blend response and stability and cultivar blending ability in oat
Crop Science, 41(6), 1689–1696. http://www.scopus.com/inward/record.url?eid=2-s2.0-0035656793&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2001 journal article
Correlated responses of fatty acid composition, grain quality, and agronomic traits to nine cycles of recurrent selection for increased oil content in oat
EUPHYTICA, 122(1), 69–79.
Contributors: J. Holland*, K. Frey* & E. Hammond*
author keywords: Avena; fatty acid composition; genetic correlation; groat-oil; recurrent selection
TL;DR:
There was no evidence for reduced genetic variance or heritability in C9 for any trait, but the genotypic and phenotypic correlations between agronomic traits and oil content fluctuated over cycles.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2001 journal article
Genetic relationships of crown rust resistance, grain yield, test weight, and seed weight in oat
Crop Science, 41(4), 1041–1050. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034891094&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2001 journal article
Polymorphism of PCR-based markers targeting exons, introns, promoter regions, and SSRs in maize and introns and repeat sequences in oat
GENOME, 44(6), 1065–1076.
Contributors: J. Holland*, S. Helland, N. Sharopova & D. Rhyne
author keywords: Avena; Zea; genetic diversity; DNA sequence
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
2001 journal article
Polymorphism of PCR-based markers targeting exons, introns, promoter regions, and SSRs in maize and introns and repeat sequences in oat
Genome, 44(6), 1065–1076.
TL;DR:
PCR primer pairs that target specific regions of previously sequenced genes from Avena and Zea species reveal the most polymorphism when amplified by PCR, and polymorphic primer pairs in maize are developed.
(via Semantic Scholar)
Source: ORCID
Added: December 8, 2020
2001 journal article
Selection for greater β-glucan content in oat grain
Crop Science, 41(4), 1085–1091. http://www.scopus.com/inward/record.url?eid=2-s2.0-0034890343&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
2000 journal article
Recurrent selection in oat for adaptation to diverse environments
EUPHYTICA, 113(3), 195–205.
Contributors: J. Holland*, Å. Bjørnstad, K. Frey, M. Gullord, D. Wesenberg & T. Buraas
author keywords: Avena; genetic correlation; genotype-environment interaction; stability
TL;DR:
The results suggest that selection successfully improved mean population yield both within and across locations, and yield stability across environments, and in developing families with outstanding adaptation to diverse environments.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: ORCID, Web Of Science
Added: August 6, 2018
1999 journal article
Cultivar effects on oat-berseem clover intercrops
Agronomy Journal, 91(2), 321–329. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032772190&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1999 journal article
Heritability of lipase activity of oat caryopses
Crop Science, 39(4), 1055–1059. http://www.scopus.com/inward/record.url?eid=2-s2.0-0032770550&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1999 journal article
Nine cycles of recurrent selection for increased groat-oil content in oat
Crop Science, 39(6), 1636–1641. http://www.scopus.com/inward/record.url?eid=2-s2.0-0033374759&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1998 journal article
EPISTACY: A SAS program for detecting two-locus epistatic interactions using genetic marker information
Journal of Heredity, 89(4), 374–375.
Source: ORCID
Added: December 8, 2020
1998 journal article
Inheritance of resistance to southern corn rust in tropical by corn-belt maize populations
THEORETICAL AND APPLIED GENETICS, 96(2), 232–241.
Contributors: * , D. Uhr, D. Jeffers * & M. Goodman n
author keywords: Puccinia polysora; RFLP markers; partial resistance
TL;DR:
RFLP loci on three chromosomal regions previously known to possess genes for resistance to either southern rust or common rust were used to localize genes affecting resistance to southern rust in selected genotypes of both populations, and to estimate their genetic effects.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: ORCID, Web Of Science
Added: August 6, 2018
1998 journal article
Recombination values for the Ms6-W1 chromosome region in different genetic backgrounds in soybean
Crop Science, 38(2), 293–296. http://www.scopus.com/inward/record.url?eid=2-s2.0-0031811862&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1997 journal article
QTLs and epistasis associated with vernalization responses in oat
Crop Science, 37(4), 1306–1316. http://www.scopus.com/inward/record.url?eid=2-s2.0-0030822104&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1996 journal article
Identification of agronomically superior Latin American maize accessions via multi-stage evaluations
Crop Science, 36(3), 778–784. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029832942&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1996 journal article
Inheritance of β-glucan content of oat grain
Crop Science, 36(3), 567–572. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029789190&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1995 journal article
Combining ability of tropical maize accessions with U.S. germplasm
Crop Science, 35(3), 767–773. http://www.scopus.com/inward/record.url?eid=2-s2.0-0029165570&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
1994 journal article
Genetic improvement for yield and fertility of alfalfa cultivars representing different eras of breeding
Crop Science, 34(4), 953–957. http://www.scopus.com/inward/record.url?eid=2-s2.0-0027995637&partnerID=MN8TOARS
Source: ORCID
Added: December 8, 2020
Employment
Updated: May 5th, 2015 22:17
1999 - present
North Carolina State University Raleigh, NC, US
Professor
Crop Science
1999 - present
USDA Agricultural Research Service Raleigh, NC, US
Research Geneticist
Plant Science Research Unit
1994 - 1999
Iowa State University Ames, IA, US
Assistant Professor
Agronomy
Education
Updated: April 27th, 2015 13:07
1991 - 1994
North Carolina State University Raleigh, NC, US
PhD
Crop Science
1989 - 1991
University of Wisconsin Madison Madison, WI, US
MS
Plant Breeding and Plant Genetics
1985 - 1989
Johns Hopkins University Baltimore, MD, US
BA
Biology
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