James B Holland

2018-2019 field seasons of the Maize Genomes to Fields (G2F) G x E project

BMC GENOMIC DATA, 24(1).

Bearded or smooth? Awns improve yield when wheat experiences heat stress during grain fill

DeWitt, N., Lyerly, J., Guedira, M., Holland, J. B., Ward, B. P., Murphy, J. P., … Brown-Guedira, G. (2023, March 1).

Bearded or smooth? Awns improve yield when wheat experiences heat stress during grain fill in the southeastern United States

Journal of Experimental Botany.

Characterization of a Host-Specific Toxic Activity Produced by Bipolaris cookei, Causal Agent of Target Leaf Spot of Sorghum

Samira, R., Lopez, L. F. S., Holland, J., & Balint-Kurti, P. J. (2023, January 16). PHYTOPATHOLOGY, Vol. 1.

Enhancing adaptation of tropical maize to temperate environments using genomic selection

Choquette, N. E., Weldekidan, T., Brewer, J., Davis, S. B., Wisser, R. J., & Holland, J. B. (2023, June 27). (A. Lipka, Ed.). G3-GENES GENOMES GENETICS, Vol. 6.

Environment-specific selection alters flowering-time plasticity and results in pervasive pleiotropic responses in maize

Choquette, N. E., Holland, J. B., Weldekidan, T., Drouault, J., Leon, N., Flint-Garcia, S., … Wisser, R. J. (2023, February 25). NEW PHYTOLOGIST, Vol. 2.

Genomes to Fields 2022 Maize genotype by Environment Prediction Competition

Lima, D. C., Washburn, J. D., Varela, J. I., Chen, Q., Gage, J. L., Romay, M. C., … Leon, N. (2023, July 17). BMC RESEARCH NOTES, Vol. 16.

Empirical comparison of genomic and phenotypic selection for resistance to Fusarium ear rot and fumonisin contamination in maize

Butoto, E. N., Brewer, J. C., & Holland, J. B. (2022, July 4). THEORETICAL AND APPLIED GENETICS, Vol. 7.

Environment-specific genomic prediction ability in maize using environmental covariates depends on environmental similarity to training data

G3-GENES GENOMES GENETICS, 12(2).

Genomic prediction for the Germplasm Enhancement of Maize project

Rogers, A. R., Bian, Y., Krakowsky, M., Peters, D., Turnbull, C., Nelson, P., & Holland, J. B. (2022, October 24). PLANT GENOME, Vol. 10.

Outlook for Implementation of Genomics-Based Selection in Public Cotton Breeding Programs

PLANTS-BASEL, 11(11).

Prediction ability of genome-wide markers in Pinus taeda L. within and between population is affected by relatedness to the training population and trait genetic architecture

G3-GENES GENOMES GENETICS, 12(2).

Saving Genetic Diversity in Seed Banks

Holland, J. (2022, August 11).

The History of Maize

Holland, J. (2022, August 11).

A conserved genetic architecture among populations of the maize progenitor, teosinte, was radically altered by domestication

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 118(43).

Characterizing the oligogenic architecture of plant growth phenotypes informs genomic selection approaches in a common wheat population

BMC GENOMICS, 22(1).

Domestication Reshaped the Genetic Basis of Inbreeding Depression in a Maize Landrace Compared to its Wild Relative, Teosinte

Holland, J. B., Samayoa, L. F., Olukolu, B. A., Yang, C. J., Chen, Q., Stetter, M. G., … Doebley, J. F. (2021, September 2).

Domestication reshaped the genetic basis of inbreeding depression in a maize landrace compared to its wild relative, teosinte

PLOS GENETICS, 17(12).

Drought resilience in CIMMYT maize lines adapted to Africa resulting from transpiration sensitivity to vapor pressure deficit and soil drying

Chiango, H., Jafarikouhini, N., Pradhan, D., Figueiredo, A., Silva, J., Sinclair, T. R., & Holland, J. (2021, August 5). JOURNAL OF CROP IMPROVEMENT, Vol. 8.

Effects of artificial inoculation on trait correlations with resistance to Fusarium ear rot and fumonisin contamination in maize

Butoto, E. N., Marino, T. P., & Holland, J. B. (2021, June 18). CROP SCIENCE, Vol. 5.

Eleven biosynthetic genes explain the majority of natural variation in carotenoid levels in maize grain

PLANT CELL, 33(4), 882–900.

Not so local: the population genetics of convergent adaptation in maize and teosinte

Tittes, S., Lorant, A., McGinty, S., Holland, J. B., Jesus Sánchez-González, J., Seetharam, A., … Ross-Ibarra, J. (2021, September 10).

Registration of tropical populations of maize selected in parallel for early flowering time across the United States

Weldekidan, T., Manching, H., Choquette, N., Leon, N., Flint-Garcia, S., Holland, J., … Wisser, R. J. (2021, October 13). JOURNAL OF PLANT REGISTRATIONS, Vol. 10.

The importance of dominance and genotype-by-environment interactions on grain yield variation in a large-scale public cooperative maize experiment

G3-GENES GENOMES GENETICS, 11(2).

The potential to breed a low-protein maize for protein-restricted diets

Woore, M. S., Flint-Garcia, S. A., & Holland, J. B. (2021, September 19). CROP SCIENCE, Vol. 61.

Utility of Climatic Information via Combining Ability Models to Improve Genomic Prediction for Yield Within the Genomes to Fields Maize Project

FRONTIERS IN GENETICS, 11.

A Genome-Wide Association Study To Understand the Effect of Fusarium verticillioides Infection on Seedlings of a Maize Diversity Panel

G3-GENES GENOMES GENETICS, 10(5), 1685–1696.

Association mapping and genomic prediction for ear rot disease caused by Fusarium verticillioides in a tropical maize germplasm

CROP SCIENCE, 60(6), 2867–2881.

Dominance Effects and Functional Enrichments Improve Prediction of Agronomic Traits in Hybrid Maize

GENETICS, 215(1), 215–230.

Eleven biosynthetic genes explain the majority of natural variation for carotenoid levels in maize grain

Diepenbrock, C. H., Ilut, D. C., Magallanes-Lundback, M., Kandianis, C. B., Lipka, A. E., Bradbury, P. J., … DellaPenna, D. (2020, July 15). (Vol. 7). Vol. 7.

Genetic variation for plant growth traits in a common wheat population is dominated by known variants and novel QTL

DeWitt, N., Guedira, M., Lauer, E., Murphy, J. P., Marshall, D., Mergoum, M., … Brown-Guedira, G. (2020, December 16).

Genetic variation for response to mixed triazole and strobilurin application in diverse maize

Agrosystems, Geosciences & Environment, 3(1).

Genome-wide association analysis of the strength of the MAMP-elicited defense response and resistance to target leaf spot in sorghum

Scientific Reports, 10(1).

Genomic prediction for resistance to Fusarium ear rot and fumonisin contamination in maize

CROP SCIENCE, 60(4), 1863–1875.

Heterosis of leaf and rhizosphere microbiomes in field‐grown maize

New Phytologist, 228(3), 1055–1069.

Maize genomes to fields (G2F): 2014-2017 field seasons: Genotype, phenotype, climatic, soil, and inbred ear image datasets

BMC Research Notes, 13(1).

Relative utility of agronomic, phenological, and morphological traits for assessing genotype-by-environment interaction in maize inbreds

Crop Science, 60(1), 62–81.

The genetic architecture of the maize progenitor, teosinte, and how it was altered during maize domestication

PLOS GENETICS, 16(5).

A Genome Wide Association Study Reveals Markers and Genes Associated with Resistance to Fusarium verticillioides Infection of Seedlings in a Maize Diversity Panel

G3-GENES GENOMES GENETICS, 9(2), 571–579.

Diverse Components of Resistance to Fusarium verticillioides Infection and Fumonisin Contamination in Four Maize Recombinant Inbred Families

TOXINS, 11(2).

Genomic-Wide Association Study of Popping Expansion in Tropical Popcorn and Field Corn Germplasm

CROP SCIENCE, 59(5), 2007–2019.

Optimal Designs for Genomic Selection in Hybrid Crops

MOLECULAR PLANT, 12(3), 390–401.

The Genomic Basis for Short-Term Evolution of Environmental Adaptation in Maize

GENETICS, 213(4), 1479–1494.

The genetic architecture of teosinte catalyzed and constrained maize domestication

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 116(12), 5643–5652.

Training population selection and use of fixed effects to optimize genomic predictions in a historical USA winter wheat panel

THEORETICAL AND APPLIED GENETICS, 132(4), 1247–1261.

Validation and Characterization of Maize Multiple Disease Resistance QTL

G3 Genes|Genomes|Genetics, 9(9), 2905–2912.

Accounting for Genotype-by-Environment Interactions and Residual Genetic Variation in Genomic Selection for Water-Soluble Carbohydrate Concentration in Wheat

G3-GENES GENOMES GENETICS, 8(6), 1909–1919.

Defining the Role of the MADS-Box Gene, Zea Agamous-like1, a Target of Selection During Maize Domestication

JOURNAL OF HEREDITY, 109(3), 333–338.

Dissecting Symptomatology and Fumonisin Contamination Produced by Fusarium verticillioides in Maize Ears

PHYTOPATHOLOGY, 108(12), 1475–1485.

Ecogeography of teosinte

PLOS ONE, 13(2).

Harnessing Maize Biodiversity

In Compendium of Plant Genomes.

Maize Genomes to Fields: 2014 and 2015 field season genotype, phenotype, environment, and inbred ear image datasets

BMC Research Notes, 11(1).

Plant Genetics: Two Steps on the Path to Maize Adaptation

Holland, J. B. (2018, September 24). CURRENT BIOLOGY, Vol. 28, pp. R1098–R1101.

Enhancing genomic prediction with genome-wide association studies in multiparental maize populations

HEREDITY, 118(6), 585–593.

Genetic Data Analysis for Plant and Animal Breeding

Genome-Wide Associations for Water-Soluble Carbohydrate Concentration and Relative Maturity in Wheat Using SNP and DArT Marker Arrays

G3-GENES GENOMES GENETICS, 7(8), 2821–2830.

Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America

SCIENCE, 357(6350), 512–515.

High-Throughput Resequencing of Maize Landraces at Genomic Regions Associated with Flowering Time

PLOS ONE, 12(1).

Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)

Proceedings of the National Academy of Sciences of the United States of America, 114(1), E57–66.

Population extremes for assessing trait value and correlated response of genetically complex traits

Field Crops Research, 201, 122–132.

Selection for water-soluble carbohydrate accumulation and investigation of genetic x environment interactions in an elite wheat breeding population

THEORETICAL AND APPLIED GENETICS, 130(11), 2445–2461.

The effect of artificial selection on phenotypic plasticity in maize

NATURE COMMUNICATIONS, 8(1).

Variation in the Fusarium verticilloides-maize pathosystem and implications for sorting mycotoxin-contaminated maize grain

Phytopathology, 107(2), 11–11.

Genetic Architecture of Domestication-Related Traits in Maize

GENETICS, 204(1), 99-+.

Genetic Characterization of the North Carolina State University Maize Lines

CROP SCIENCE, 56(1), 259–275.

Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.)

Proceedings of the National Academy of Sciences, 114(1), E57–E66.

Responses to Recurrent Index Selection for Reduced Fusarium Ear Rot and Lodging and for Increased Yield in Maize

CROP SCIENCE, 56(1), 85–94.

The Genetics of Leaf Flecking in Maize and Its Relationship to Plant Defense and Disease Resistance

Plant Physiology, 172(3), 1787–1803.

Charles W. Stuber: Maize Geneticist and Pioneer of Marker-Assisted Selection

Plant Breeding Reviews, Vol 39, 39, 1–22.

Charles W. Stuber: Maize Geneticist and Pioneer of Marker-Assisted Selection

In Plant Breeding Reviews (Vol. 39, pp. 1–22).

Ensemble Learning of QTL Models Improves Prediction of Complex Traits

G3-GENES GENOMES GENETICS, 5(10), 2073–2084.

Genome-wide association study reveals a set of genes associated with resistance to the Mediterranean corn borer (Sesamia nonagrioides L.) in a maize diversity panel

BMC PLANT BIOLOGY, 15(1).

Hallauer's Tuson: a decade of selection for tropical-to-temperate phenological adaptation in maize

HEREDITY, 114(2), 229–240.

Joint-multiple family linkage analysis predicts within-family variation better than single-family analysis of the maize nested association mapping population

HEREDITY, 114(6), 552–563.

MAGIC maize: a new resource for plant genetics

Holland, J. B. (2015, September 11). GENOME BIOLOGY, Vol. 16.

New insight into a complex plant–fungal pathogen interaction

Nature Genetics, 47(2), 101–103.

QTL Mapping Using High-Throughput Sequencing

Registration of the Ki14 × B73 Recombinant Inbred Mapping Population of Maize

Journal of Plant Registrations, 9(2), 262–265.

A Genome-Wide Association Study of the Maize Hypersensitive Defense Response Identifies Genes That Cluster in Related Pathways

PLoS Genetics, 10(8), e1004562.

Breeding and genetic diversity

In Genetics, Genomics and Breeding of Maize (pp. 14–50).

Breeding: Plants, Modern

In Encyclopedia of Agriculture and Food Systems (pp. 187–200).

Causes and Consequences of Genetic Background Effects Illuminated by Integrative Genomic Analysis

GENETICS, 196(4), 1321-+.

Genome-wide association study of Fusarium ear rot disease in the USA maize inbred line collection

BMC PLANT BIOLOGY, 14(1).

Insights into the effects of long-term artificial selection on seed size in maize

Genetics, 198(1), 409-.

Limits on the reproducibility of marker associations with southern leaf blight resistance in the maize nested association mapping population