Works (135)

Updated: April 11th, 2023 10:13

2022 review

Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 68.

author keywords: Tissue specificity; Gene expression; Synthetic biology; Transcription; factor; Epigenetics; Single cell; Transcriptomics; Logic gate; Promoter; Cis-regulatory element
Sources: Web Of Science, ORCID
Added: June 12, 2022

2022 journal article

Tandem C2 domains mediate dynamic organelle targeting of a DOCK family guanine nucleotide exchange factor

JOURNAL OF CELL SCIENCE, 135(7).

By: E. Mallery*, M. Yanagisawa*, C. Zhang*, Y. Lee*, L. Robles n, J. Alonso n, D. Szymanski*

author keywords: DOCK; Rac/Rho-of-plants; Lipid binding; Organelle association; Small GTPases
Sources: ORCID, Web Of Science
Added: April 14, 2022

2022 journal article

To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses

PLANTS-BASEL, 11(1).

By: H. Chen, D. Bullock, J. Alonso n & A. Stepanova

author keywords: ethylene; abiotic stress; hormone crosstalk; growth and defense tradeoff
Sources: Web Of Science, ORCID
Added: December 24, 2021

2021 journal article

A G protein-coupled receptor-like module regulates cellulose synthase secretion from the endomembrane system in Arabidopsis

DEVELOPMENTAL CELL, 56(10), 1484-+.

By: H. McFarlane*, D. Mutwil-Anderwald*, J. Verbancic*, K. Picard*, T. Gookin*, A. Froehlich*, D. Chakravorty*, L. Trindade* ...

Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 journal article

Auxin Interactions with Other Hormones in Plant Development

Cold Spring Harbor Perspectives in Biology, 13(10), a039990.

By: S. Mazzoni-Putman, J. Brumos n, C. Zhao, J. Alonso n & A. Stepanova

Sources: Crossref, ORCID, Web Of Science
Added: April 27, 2021

2021 review

Leveraging synthetic biology approaches in plant hormone research

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 60.

By: C. Zhao, A. Yaschenko, J. Alonso & A. Stepanova

Sources: Web Of Science, ORCID
Added: June 28, 2021

2020 journal article

An Improved Recombineering Toolset for Plants

The Plant Cell.

By: J. Brumos n, C. Zhao n, Y. Gong n, D. Soriano n, A. Patel n, M. Perez-Amador n, A. Stepanova, J. Alonso n

Source: ORCID
Added: January 11, 2020

2020 journal article

Development of a relative quantification method for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 34(6).

By: M. Bagley n, A. Stepanova, M. Ekelof, J. Alonso n & D. Muddiman

Sources: Web Of Science, ORCID
Added: March 10, 2020

2020 journal article

Gibberellin-mediated RGA-LIKE1 degradation regulates embryo sac development in Arabidopsis

JOURNAL OF EXPERIMENTAL BOTANY, 71(22), 7059–7072.

By: M. Dolores Gomez, D. Barro-Trastoy*, C. Fuster-Almunia, P. Tornero*, J. Alonso n & M. Perez-Amador

author keywords: Arabidopsis; DELLA; development; embryo sac; gibberellin; megagametogenesis; ovule; RGL1
Sources: Web Of Science, ORCID
Added: February 15, 2021

2020 journal article

Regulation of ovule initiation by gibberellins and brassinosteroids in tomato and Arabidopsis: two plant species, two molecular mechanisms

The Plant Journal, 102(5), 1026–1041.

By: D. Barro‐Trastoy*, E. Carrera*, J. Baños*, J. Palau‐Rodríguez*, O. Ruiz‐Rivero*, P. Tornero*, J. Alonso n, I. López‐Díaz*, M. Gómez*, M. Pérez‐Amador*

author keywords: Arabidopsis thaliana; tomato; Solanum lycopersicum; gibberellins; brassinosteroids; ovule; reproductive development; hormone interaction
Source: ORCID
Added: February 14, 2020

2020 chapter

RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data

In I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums, & A. Zelikovsky (Eds.), Computational Advances in Bio and Medical Sciences (pp. 121–133).

By: P. Perkins n, A. Stepanova n, J. Alonso n & S. Heber n

Ed(s): I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums & A. Zelikovsky

Event: ICCABS 2019

Sources: Crossref, ORCID
Added: October 9, 2021

2020 journal article

Structure–Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes

Plant Physiology, 183(3), 1110–1125.

By: J. Brumos n, B. Bobay*, C. Clark n, J. Alonso n & A. Stepanova

Source: ORCID
Added: July 2, 2020

2019 article

An improved plant toolset for high-throughput recombineering

Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2019, June 3). (Vol. 6). Vol. 6.

By: J. Brumos n, C. Zhao n, Y. Gong n, D. Soriano n, A. Patel n, M. Perez-Amador n, A. Stepanova, J. Alonso n

Source: ORCID
Added: December 19, 2019

2019 article

From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration

Stepanova, A. N., & Alonso, J. M. (2019, July). PLANT CELL, Vol. 31, pp. 1393–1394.

By: A. Stepanova & J. Alonso n

Sources: Web Of Science, ORCID
Added: July 29, 2019

2019 journal article

RGL2 controls flower development, ovule number and fertility in Arabidopsis

PLANT SCIENCE, 281, 82–92.

By: M. Dolores Gomez, C. Fuster-Almunia, J. Ocana-Cuesta*, J. Alonso n & M. Perez-Amador

author keywords: Gibberellin; DELLA; RGL2; Arabidopsis; Development; Ovule
Sources: Web Of Science, ORCID
Added: April 2, 2019

2019 article

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

Perkins, P., Mazzoni-Putman, S., Stepanova, A., Alonso, J., & Heber, S. (2019, June 6). BMC GENOMICS, Vol. 20.

By: P. Perkins, S. Mazzoni-Putman n, A. Stepanova, J. Alonso n & S. Heber

author keywords: Ribo-seq; Next-generation sequencing; Data analysis; Web application
Sources: Web Of Science, ORCID
Added: July 1, 2019

2018 journal article

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1).

Sources: Crossref, ORCID
Added: December 19, 2019

2018 journal article

Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

Nature Communications, 9(1), 1818.

By: R. Bhosale*, J. Giri*, B. Pandey*, R. Giehl*, A. Hartmann*, R. Traini*, J. Truskina*, N. Leftley* ...

Sources: Crossref, ORCID
Added: December 19, 2019

2018 journal article

Gibberellins negatively modulate ovule number in plants

Development, 145(13), dev163865.

By: M. Gomez*, D. Barro-Trastoy*, E. Escoms*, M. Saura-Sánchez*, I. Sánchez*, A. Briones-Moreno*, F. Vera-Sirera*, E. Carrera* ...

author keywords: Ovule; Seed; Gibberellin; Auxin; Arabidopsis; Tomato
Sources: Crossref, ORCID
Added: October 9, 2021

2018 journal article

Local Auxin Biosynthesis Is a Key Regulator of Plant Development

DEVELOPMENTAL CELL, 47(3), 306-+.

By: J. Brumos n, L. Robles n, J. Yun, T. Vu n, S. Jackson n, J. Alonso n, A. Stepanova

Sources: Web Of Science, ORCID
Added: November 26, 2018

2018 journal article

Microtubule-Dependent Confinement of a Cell Signaling and Actin Polymerization Control Module Regulates Polarized Cell Growth

Current Biology, 28(15), 2459–2466.e4.

By: M. Yanagisawa*, J. Alonso n & D. Szymanski*

Sources: Crossref, ORCID
Added: January 25, 2020

2017 article

Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle (vol 8, pg 889, 2017)

Estrada-Johnson, E., Csukasi, F., Pizarro, C. M., Vallarino, J. G., Kiryakova, Y., Vioque, A., … Valpuesta, V. (2017, July 24). FRONTIERS IN PLANT SCIENCE, Vol. 8.

By: E. Estrada-Johnson*, F. Csukasi*, C. Pizarro*, J. Vallarino*, Y. Kiryakova*, A. Vioque*, C. Merchante*, J. Brumos n ...

author keywords: auxin; fruit; strawberry; transcriptome regulation; ripening
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 journal article

Transcriptomic analysis in strawberry fruits reveals active auxin biosynthesis and signaling in the ripe receptacle

Frontiers in Plant Science, 8.

By: E. Estrada-Johnson, F. Csukasi, C. Pizarro, J. Vallarino, Y. Kiryakova, A. Vioque, J. Brumos, N. Medina-Escobar ...

Source: NC State University Libraries
Added: August 6, 2018

2017 journal article

Translation regulation in plants: an interesting past, an exciting present and a promising future

PLANT JOURNAL, 90(4), 628–653.

By: C. Merchante*, A. Stepanova & J. Alonso n

author keywords: translation; upstream open reading frames; internal ribosomal entry sites; gene-specific translation; global regulation of translation; RNA-binding protein
Sources: Web Of Science, ORCID
Added: August 6, 2018

2017 report

Translation regulation of uORFs-containing genes in Arabidopsis

By: C. Merchante, J. Yun, V. Valpuesta-Fernandez, A. Stepanova & J. Alonso

Source: NC State University Libraries
Added: October 14, 2021

2016 review

50 years of Arabidopsis research: Highlights and future directions

[Review of ]. New Phytologist, 209(3), 921–944.

By: N. Provart, J. Alonso, S. Assmann, D. Bergmann, S. Brady, J. Brkljacic, J. Browse, C. Chapple ...

Source: NC State University Libraries
Added: August 6, 2018

2016 journal article

A Ribosome Footprinting Protocol for Plants

BIO-PROTOCOL, 6(21).

By: C. Merchante, Q. Hu, S. Heber, J. Alonso & A. Stepanova

Sources: Crossref, ORCID
Added: October 10, 2021

2016 article

Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis

Stepanova, A. N., & Alonso, J. M. (2016, September 27). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 113, pp. 10742–10744.

By: A. Stepanova & J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

Cutting Out the Middle Man in Light-Hormone Interactions

Stepanova, A. N., & Alonso, J. M. (2016, December 5). DEVELOPMENTAL CELL, Vol. 39, pp. 524–526.

Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Genome-wide search for translated upstream open reading frames in Arabidopsis thaliana

IEEE Transactions on Nanobioscience, 15(2), 150–159.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2016 report

Hormone-Mediated Gene-Specific Translation Regulation

http://hdl.handle.net/10630/11885

By: C. Merchante, J. Brumós, J. Yun, A. Stepanova & J. Alonso

Source: NC State University Libraries
Added: October 14, 2021

2015 journal article

A Recombineering-based gene tagging system for Arabidopsis

Bacterial Artificial Chromosomes, 2nd Edition, 1227, 233–243.

By: J. Alonso & A. Stepanova

Source: NC State University Libraries
Added: August 6, 2018

2015 chapter

A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana

In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).

By: Q. Hu n, C. Merchante n, A. Stepanova, J. Alonso n & S. Heber

author keywords: uORF; Translation; Ribosome footprinting; Stacking; Classification; Arabidopsis thaliana
Sources: Crossref, ORCID
Added: December 19, 2019

2015 conference paper

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

Bioinformatics research and applications (isbra 2015), 9096, 138–149.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Auxin Influx Carriers Control Vascular Patterning and Xylem Differentiation in Arabidopsis thaliana

PLOS GENETICS, 11(4).

By: N. Fabregas*, P. Formosa-Jordan*, A. Confraria*, R. Siligato*, J. Alonso n, R. Swarup*, M. Bennett*, A. Mahonen*, A. Cano-Delgado*, M. Ibanes*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Bird and Scarecrow proteins organize tissue formation in Arabidopsis roots

Science, 350(6259), 426–430.

By: M. Moreno-Risueno*, R. Sozzani, G. Yardimici, J. Petricka*, T. Vernoux*, I. Blilou*, J. Alonso n, C. Winter* ...

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

CESA TRAFFICKING INHIBITOR Inhibits Cellulose Deposition and Interferes with the Trafficking of Cellulose Synthase Complexes and Their Associated Proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN

Plant Physiology, 167(2), 381–393.

By: N. Worden*, T. Wilkop*, V. Esteve*, R. Jeannotte*, R. Lathe*, S. Vernhettes*, B. Weimer*, G. Hicks* ...

Sources: Crossref, ORCID
Added: October 9, 2021

2015 journal article

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

CELL, 163(3), 684–697.

By: C. Merchante n, J. Brumos n, J. Yun, Q. Hu, K. Spencer n, P. Enriquez, B. Binder*, S. Heber, A. Stepanova, J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 conference paper

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

International conference on computational advances in bio and medical.

By: Q. Hu, C. Merchante n, A. Stepanova, J. Alonso n & S. Heber

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2015 journal article

Plant functional genomics methods and protocols second edition preface

Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.

By: J. Alonso & A. Stepanova

Source: NC State University Libraries
Added: August 6, 2018

2015 book

Plant functional genomics: Methods and protocols

In J. M. Alonso & A. N. Stepanova (Eds.), Plant Functional Genomics: Methods and Protocols: Second Edition (2nd ed., pp. 1–526).

By: J. Alonso & A. Stepanova

Ed(s): J. Alonso & A. Stepanova

Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Regulator of bulb biogenesis1 (RBB1) is involved in vacuole bulb formation in arabidopsis

PLoS One, 10(4), e0125621.

By: S. Han, J. Alonso n & M. Rojas-Pierce n

Ed(s): D. Bassham

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2014 chapter

Arabidopsis Transformation with Large Bacterial Artificial Chromosomes

In Arabidopsis Protocols (pp. 271–283).

By: J. Alonso & A. Stepanova

Source: ORCID
Added: December 19, 2019

2014 journal article

Genetic aspects of auxin biosynthesis and its regulation

PHYSIOLOGIA PLANTARUM, 151(1), 3–12.

By: J. Brumos n, J. Alonso n & A. Stepanova

Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Systems analysis of auxin transport in the arabidopsis root apex

Plant Cell, 26(3), 862–875.

By: L. Band, D. Wells, J. Fozard, T. Ghetiu, A. French, M. Pound, M. Wilson, L. Yu ...

Source: NC State University Libraries
Added: August 6, 2018

2014 journal article

The Arabidopsis 14-3-3 Protein RARE COLD INDUCIBLE 1A Links Low-Temperature Response and Ethylene Biosynthesis to Regulate Freezing Tolerance and Cold Acclimation  

The Plant Cell, 26(8), 3326–3342.

By: R. Catalá*, R. López-Cobollo*, M. Mar Castellano*, T. Angosto*, J. Alonso*, J. Ecker*, J. Salinas*

Sources: Crossref, ORCID
Added: October 9, 2021

2013 journal article

Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity

NATURE COMMUNICATIONS, 4.

By: S. Pietra*, A. Gustavsson*, C. Kiefer*, L. Kalmbach*, P. Horstedt*, Y. Ikeda*, A. Stepanova, J. Alonso n, M. Grebe*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 review

Ethylene signaling: simple ligand, complex regulation

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 16(5), 554–560.

By: C. Merchante n, J. Alonso n & A. Stepanova

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response    

Plant Physiology, 162(1), 212–224.

By: K. Hill*, D. Mathews*, H. Kim, I. Street*, S. Wildes*, Y. Chiang*, M. Mason*, J. Alonso* ...

Sources: Crossref, ORCID
Added: October 9, 2021

2013 journal article

Kinetic analysis of Arabidopsis glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition

BIOCHEMICAL JOURNAL, 450(1), 37–46.

By: J. Kopycki*, E. Wieduwild*, J. Kohlschmidt*, W. Brandt*, A. Stepanova, J. Alonso n, M. Pedras*, S. Abel*, C. Grubb*

author keywords: glucosinolate; glycosyltransferase; ordered binding; product inhibition; UDP-glycosyltransferase (UGT)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Local Auxin Sources Orient the Apical-Basal Axis in Arabidopsis Embryos

CURRENT BIOLOGY, 23(24), 2506–2512.

By: H. Robert*, P. Grones*, A. Stepanova, L. Robles, A. Lokerse*, J. Alonso n, D. Weijers*, J. Friml*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Molecular Mechanisms of EthyleneAuxin Interaction

MOLECULAR PLANT, 6(6), 1734–1737.

By: L. Robles, A. Stepanova & J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2013 journal article

Molecular mechanisms of ethylene–auxin interactions

Molecular Plant, sst113.

By: L. Robles, A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2012 journal article

AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development

The Plant Cell Online, 24(7), 2874–2885.

By: B. Péret*, K. Swarup*, A. Ferguson*, M. Seth*, Y. Yang*, S. Dhondt*, N. James*, I. Casimiro*, P. Perry*, A. Syed*

Source: ORCID
Added: December 19, 2019

2012 journal article

AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during arabidopsis development

Plant Cell, 24(7), 2874–2885.

By: B. Peret, K. Swarup, A. Ferguson, M. Seth, Y. Yang, S. Dhondt, N. James, I. Casimiro ...

Source: NC State University Libraries
Added: August 6, 2018

2011 journal article

A Small-Molecule Screen Identifies l-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis

The Plant Cell, 23(11), 3944–3960.

By: W. He*, J. Brumos n, H. Li*, Y. Ji*, M. Ke*, X. Gong*, Q. Zeng*, W. Li* ...

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2011 journal article

A recombineering-based gene tagging system for Arabidopsis

PLANT JOURNAL, 66(4), 712–723.

By: R. Zhou, L. Benavente, A. Stepanova & J. Alonso n

author keywords: Arabidopsis; recombineering; Aux; IAA; gene tagging; fluorescent; proteins
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 article

Bypassing Transcription: A Shortcut in Cytokinin-Auxin Interactions

Stepanova, A. N., & Alonso, J. M. (2011, October 18). DEVELOPMENTAL CELL, Vol. 21, pp. 608–610.

By: A. Stepanova & J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

The Arabidopsis YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis

PLANT CELL, 23(11), 3961–3973.

By: A. Stepanova, J. Yun, L. Robles, O. Novak*, W. He*, H. Guo*, K. Ljung*, J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana

Genetics, 183(3), 979–1003.

By: A. Tsuchisaka*, G. Yu*, H. Jin*, J. Alonso*, J. Ecker*, X. Zhang*, S. Gao*, A. Theologis*

Source: ORCID
Added: December 19, 2019

2009 review

Ethylene signaling and response: where different regulatory modules meet

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 12(5), 548–555.

By: A. Stepanova & J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2009 journal article

Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis

NATURE CELL BIOLOGY, 11(6), 731–U70.

By: Y. Ikeda*, S. Men*, U. Fischer*, A. Stepanova, J. Alonso n, K. Ljung*, M. Grebe*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2008 journal article

Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis

The Plant Cell Online, 20(2), 320–336.

By: J. Hu*, M. Mitchum*, N. Barnaby*, B. Ayele*, M. Ogawa*, E. Nam*, W. Lai*, A. Hanada*, J. Alonso*, J. Ecker*

Source: ORCID
Added: December 19, 2019

2008 journal article

TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development

Cell, 133(1), 177–191.

By: A. Stepanova, J. Robertson-Hoyt n, J. Yun, L. Benavente n, D. Xie, K. Doležal*, A. Schlereth*, G. Jürgens*, J. Alonso n

Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2008 journal article

The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels

The Plant Cell Online, 20(2), 337–352.

By: P. Leivar*, E. Monte*, B. Al-Sady*, C. Carle*, A. Storer*, J. Alonso*, J. Ecker*, P. Quail*

Source: ORCID
Added: December 19, 2019

2007 journal article

A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis

PLANT CELL, 19(8), 2403–2416.

By: H. Li*, Z. He*, G. Lu*, S. Lee*, J. Alonso n, J. Ecker*, S. Luan*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome

NATURE PROTOCOLS, 2(11), 2910–2917.

By: . Ronan C. O'Malley*, J. Alonso n, C. Kim*, T. Leisse* & J. Ecker*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the< i> Arabidopsis Transcriptome

Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the< i> Arabidopsis Transcriptome. Cell, 131(7), 1340–1353.

By: J. Chekanova*, B. Gregory*, S. Reverdatto*, H. Chen*, R. Kumar*, T. Hooker*, J. Yazaki*, P. Li*, N. Skiba*, Q. Peng*

Source: ORCID
Added: December 19, 2019

2007 journal article

Multilevel interactions between ethylene and auxin in Arabidopsis roots

PLANT CELL, 19(7), 2169–2185.

By: A. Stepanova, J. Yun, A. Likhacheva n & J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion-and Ca2+-permeable channels and stomatal closure

PLoS Biology, 4(10), e327.

By: I. Mori, Y. Murata, Y. Yang, S. Munemasa, Y. Wang, S. Andreoli, H. Tiriac, J. Alonso, J. Harper, J. Ecker

Source: ORCID
Added: December 19, 2019

2006 journal article

Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis

PLANT CELL, 18(7), 1704–1721.

By: A. Rudella*, G. Friso*, J. Alonso n, J. Ecker* & K. Wijk*

Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1

SCIENCE, 314(5803), 1295–1298.

By: S. Kim n, T. Punshon n, A. Lanzirotti n, L. Li n, J. Alonso n, J. Ecker n, J. Kaplan n, M. Guerinot n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2006 journal article

Molecular mechanisms of ethylene signaling in Arabidopsis

Molecular BioSystems, 2(3-4), 165.

By: L. Benavente n & J. Alonso n

Sources: Crossref, ORCID
Added: December 19, 2019

2006 journal article

Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis

Nature Reviews Genetics, 7(7), 524–536.

By: J. Alonso n & J. Ecker*

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2006 chapter

PCR-based screening for insertional mutants

In Arabidopsis Protocols (pp. 163–172).

By: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2006 journal article

PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism

Proceedings of the National Academy of Sciences, 103(26), 10134–10139.

By: P. Lariguet*, I. Schepens*, D. Hodgson*, U. Pedmale*, M. Trevisan*, C. Kami*, M. Carbonnel*, J. Alonso*, J. Ecker*, E. Liscum*

author keywords: Arabidopsis thaliana; NONPHOTOTROPIC HYPOCCTYL 3; photomorphogenesis photoreceptors
Source: ORCID
Added: December 19, 2019

2006 journal article

RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis

Journal of Experimental Botany, 57(11), 2697–2708.

By: J. Chen*, H. Ullah*, B. Temple*, J. Liang*, J. Guo*, J. Alonso*, J. Ecker*, A. Jones*

author keywords: Abscisic acid; auxin; brassinosteroid; flowering; gibberellin; RACK1; seed germination; signal transduction
Source: ORCID
Added: December 19, 2019

2006 journal article

The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling

The Plant Cell Online, 18(11), 3073–3087.

By: C. Hutchison*, J. Li*, C. Argueso*, M. Gonzalez*, E. Lee*, M. Lewis*, B. Maxwell*, T. Perdue*, G. Schaller*, J. Alonso*

Source: ORCID
Added: December 19, 2019

2005 journal article

" Flagellin is not a major defense elicitor in Ralstonia solanacearum cells (vol 17, pg 696, 2005)

MOLECULAR PLANT-MICROBE INTERACTIONS, 18(9), 1024.

By: C. Pfund, J. Tans-Kersten, F. Dunning, J. Alonso, J. Ecker, C. Allen, A. Bent

Source: ORCID
Added: December 19, 2019

2005 journal article

A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis

PLANT CELL, 17(8), 2230–2242.

By: A. Stepanova, J. Hoyt, A. Hamilton & J. Alonso n

Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance

PLANT JOURNAL, 41(2), 304–318.

By: G. Liu*, E. Holub*, J. Alonso n, . Ecker* & P. Fobert*

author keywords: reverse genetics; PR genes; cross-talk; signaling; salicylic acid; gene family
Sources: Web Of Science, ORCID
Added: August 6, 2018

2005 journal article

Arabidopsis ethylene signaling pathway

Science Signaling, 2005(276), cm4.

By: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2005 journal article

Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation

Development, 132(18), 4107–4118.

By: P. Nagpal, C. Ellis, H. Weber, S. Ploense, L. Barkawi, T. Guilfoyle, G. Hagen, J. Alonso, J. Cohen, E. Farmer

Source: ORCID
Added: December 19, 2019

2005 journal article

Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development

The Plant Cell Online, 17(1), 61–76.

By: M. Prigge, D. Otsuga, J. Alonso, J. Ecker, G. Drews & S. Clark

Source: ORCID
Added: December 19, 2019

2005 journal article

Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

By: A. Stepanova & J. Alonso

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2005 journal article

Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19

The Plant Cell Online, 17(2), 444–463.

By: Y. Okushima, P. Overvoorde, K. Arima, J. Alonso, A. Chan, C. Chang, J. Ecker, B. Hughes, A. Lui, D. Nguyen

Source: ORCID
Added: December 19, 2019

2005 journal article

Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana

The Plant Cell Online, 17(12), 3282–3300.

By: P. Overvoorde, Y. Okushima, J. Alonso, A. Chan, C. Chang, J. Ecker, B. Hughes, A. Liu, C. Onodera, H. Quach

Source: ORCID
Added: December 19, 2019

2005 journal article

Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis

The Plant Cell Online, 17(11), 3007–3018.

By: M. Mason, D. Mathews, D. Argyros, B. Maxwell, J. Kieber, J. Alonso, J. Ecker, G. Schaller

Source: ORCID
Added: December 19, 2019

2005 journal article

NPH4/ARF7 and ARF19 promote leaf expansion and auxin‐induced lateral root formation

The Plant Journal, 43(1), 118–130.

By: J. Wilmoth, S. Wang, S. Tiwari, A. Joshi, G. Hagen, T. Guilfoyle, J. Alonso, J. Ecker, J. Reed

Source: ORCID
Added: December 19, 2019

2005 journal article

Phytochrome-Specific Type 5 Phosphatase Controls Light Signal Flux by Enhancing Phytochrome Stability and Affinity for a Signal Transducer

Cell, 120(3), 395–406.

By: J. Ryu*, J. Kim*, T. Kunkel*, B. Kim*, D. Cho*, S. Hong*, S. Kim*, A. Fernández* ...

Source: Crossref
Added: September 8, 2020

2005 journal article

Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer

Cell, 120(3), 395–406.

By: J. Ryu, J. Kim, T. Kunkel, B. Kim, D. Cho, S. Hong, S. Kim, A. Fernández, Y. Kim, J. Alonso

Source: ORCID
Added: December 19, 2019

2004 journal article

A Homolog of Prokaryotic Thiol Disulfide Transporter CcdA Is Required for the Assembly of the Cytochrome b6f Complex in Arabidopsis Chloroplasts

Journal of Biological Chemistry, 279(31), 32474–32482.

By: M. Page*, P. Hamel*, S. Gabilly*, H. Zegzouti*, J. Perea*, J. Alonso*, J. Ecker*, S. Theg*, S. Christensen*, S. Merchant*

Sources: Crossref, ORCID
Added: December 19, 2019

2004 journal article

CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis

Proceedings of the National Academy of Sciences, 101(11), 3985–3990.

By: F. Novillo*, J. Alonso, J. Ecker & J. Salinas

Sources: Crossref, ORCID
Added: December 19, 2019

2004 journal article

Convergence of Signaling Pathways in the Control of Differential Cell Growth in< i> Arabidopsis

Convergence of Signaling Pathways in the Control of Differential Cell Growth in< i> Arabidopsis. Developmental Cell, 7(2), 193–204.

By: H. Li, P. Johnson, A. Stepanova, J. Alonso & J. Ecker

Source: ORCID
Added: December 19, 2019

2004 journal article

Convergence of signaling of differential cell growth pathways in the control in Arabidopsis

Developmental Cell, 7(2), 193–204.

By: H. Li*, P. Johnson*, A. Stepanova, J. Alonso* & J. Ecker*

Source: ORCID
Added: December 19, 2019

2004 journal article

DELLA proteins and gibberellin-regulated seed germination and floral development in Arabidopsis

Plant Physiology, 135(2), 1008–1019.

By: L. Tyler, S. Thomas, J. Hu, A. Dill, J. Alonso, J. Ecker, T. Sun

Source: ORCID
Added: December 19, 2019

2004 journal article

Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana

MOLECULAR PLANT-MICROBE INTERACTIONS, 17(6), 696–706.

By: C. Pfund, J. Tans-Kersten, F. Dunning, J. Alonso, . Ecker, C. Allen, A. Bent

Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination

Plant Physiology, 135(2), 907–915.

By: J. Chen, S. Pandey, J. Huang, J. Alonso, J. Ecker, S. Assmann, A. Jones

Source: ORCID
Added: December 19, 2019

2004 journal article

Regulation of flowering time in Arabidopsis by K homology domain proteins

Proceedings of the National Academy of Sciences, 101(34), 12759–12764.

By: T. Mockler*, X. Yu, D. Shalitin, D. Parikh, T. Michael, J. Liou, J. Huang, Z. Smith ...

Sources: Crossref, ORCID
Added: December 19, 2019

2004 journal article

The canonical ethylene signaling pathway

Science Signaling, 2004(221), cm1.

By: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2004 journal article

The ethylene signaling pathway

SCIENCE, 306(5701), 1513–1515.

By: J. Alonso n & A. Stepanova

Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 journal article

The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development

Proceedings of the National Academy of Sciences, 101(46), 16091–16098.

By: E. Monte*, J. Tepperman*, B. Al-Sady*, K. Kaczorowski*, J. Alonso*, J. Ecker*, X. Li*, Y. Zhang*, P. Quail*

Sources: Crossref, ORCID
Added: December 19, 2019

2004 journal article

Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling

The Plant Cell Online, 16(3), 658–671.

By: J. To, G. Haberer, F. Ferreira, J. Deruère, M. Mason, G. Schaller, J. Alonso, J. Ecker, J. Kieber

Source: ORCID
Added: December 19, 2019

2003 journal article

< i> Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance

< i> Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance. Cell, 112(3), 379–389.

By: D. Mackey, Y. Belkhadir, J. Alonso, J. Ecker & J. Dangl

Source: ORCID
Added: December 19, 2019

2003 journal article

A growth regulatory loop that provides homeostasis to phytochrome A signaling

The Plant Cell Online, 15(12), 2966–2978.

By: P. Lariguet, H. Boccalandro, J. Alonso, J. Ecker, J. Chory, J. Casal, C. Fankhauser

Source: ORCID
Added: December 19, 2019

2003 journal article

Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX

Nature, 421(6918), 79–83.

By: Å. Strand, T. Asami, J. Alonso, J. Ecker & J. Chory

Source: ORCID
Added: December 19, 2019

2003 journal article

Enhanced fitness conferred by naturally occurring variation in the circadian clock

Science, 302(5647), 1049–1053.

By: T. Michael, P. Salome, J. Hannah, T. Spencer, E. Sharp, M. McPeek, J. Alonso, J. Ecker, C. McClung

Source: ORCID
Added: December 19, 2019

2003 journal article

Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis

Proceedings of the National Academy of Sciences, 100(5), 2992–2997.

By: J. Alonso, A. Stepanova, R. Solano, E. Wisman, S. Ferrari, F. Ausubel, J. Ecker

Source: ORCID
Added: December 19, 2019

2003 journal article

GUN4, a regulator of chlorophyll synthesis and intracellular signaling

Science, 299(5608), 902–906.

By: R. Larkin, J. Alonso, J. Ecker & J. Chory

Source: ORCID
Added: December 19, 2019

2003 journal article

Genome-wide insertional mutagenesis of Arabidopsis thaliana

Science, 301(5633), 653–657.

By: J. Alonso, A. Stepanova, T. Leisse, C. Kim, H. Chen, P. Shinn, D. Stevenson, J. Zimmerman, P. Barajas, R. Cheuk

Source: ORCID
Added: December 19, 2019

2003 journal article

Genome-wide insertional mutagenesis of Arabidopsis thaliana (vol 301, pg 653, 2003)

Science, 301(5641), 1849.

By: J. Alonso

Source: ORCID
Added: December 19, 2019

2003 journal article

Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways

The Plant Cell Online, 15(9), 1962–1980.

By: E. Monte, J. Alonso, J. Ecker, Y. Zhang, X. Li, J. Young, S. Austin-Phillips, P. Quail

Source: ORCID
Added: December 19, 2019

2003 journal article

Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis

The Plant Cell Online, 15(12), 2940–2951.

By: R. Catalá, E. Santos, J. Alonso, J. Ecker, J. Martínez-Zapater & J. Salinas

Source: ORCID
Added: December 19, 2019

2003 chapter

T-DNA mutagenesis in Arabidopsis

In Plant Functional Genomics (pp. 177–187).

By: J. Alonso n & A. Stepanova

Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2003 journal article

The Balance between phytochrome kinase substrate1 and PKS2 Provides Homeostasis for Phytochrome A Signaling in Arabidopsis

The Plant Cell Online.

By: P. Lariguet, H. Boccalandro, J. Alonso, J. Ecker, J. Chory, J. Casal, C. Fankhausera

Source: ORCID
Added: December 19, 2019

2003 journal article

The β-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes

The Plant Cell Online, 15(2), 393–409.

By: H. Ullah, J. Chen, B. Temple, D. Boyes, J. Alonso, K. Davis, J. Ecker, A. Jones

Source: ORCID
Added: December 19, 2019

2002 journal article

A role for peroxisomes in photomorphogenesis and development of Arabidopsis

Science, 297(5580), 405–409.

By: J. Hu, M. Aguirre, C. Peto, J. Alonso, J. Ecker & J. Chory

Source: ORCID
Added: December 19, 2019

2002 journal article

De-Etiolated 1 and Damaged DNA Binding Protein 1 Interact to Regulate< i> Arabidopsis Photomorphogenesis

De-Etiolated 1 and Damaged DNA Binding Protein 1 Interact to Regulate< i> Arabidopsis Photomorphogenesis. Current Biology, 12(17), 1462–1472.

By: D. Schroeder, M. Gahrtz, B. Maxwell, R. Cook, J. Kan, J. Alonso, J. Ecker, J. Chory

Source: ORCID
Added: December 19, 2019

2002 journal article

NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE

Plant Physiology, 129(2), 530–539.

By: H. Zheng, S. Bednarek, A. Sanderfoot, J. Alonso, J. Ecker & N. Raikhel

Source: ORCID
Added: December 19, 2019

2002 journal article

Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth

Genetics, 162(3), 1445–1456.

By: D. Friedrichsen, J. Nemhauser, T. Muramitsu, J. Maloof, J. Alonso, J. Ecker, M. Furuya, J. Chory

Source: ORCID
Added: December 19, 2019

2002 journal article

Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3

Genes & Development, 16(23), 3100–3112.

By: Y. Zhao, A. Hull, N. Gupta, K. Goss, J. Alonso, J. Ecker, J. Normanly, J. Chory, J. Celenza

Source: ORCID
Added: December 19, 2019

2001 journal article

An Arabidopsis circadian clock component interacts with both CRY1 and phyB

Nature, 410(6827), 487–490.

By: J. Jarillo, J. Capel, R. Tang, H. Yang, J. Alonso, J. Ecker, A. Cashmore

Source: ORCID
Added: December 19, 2019

2001 journal article

Phototropin-related NPL1 controls chloroplast relocation induced by blue light

Nature, 410(6831), 952–954.

By: J. Jarillo, H. Gabrys, J. Capel, J. Alonso, J. Ecker & A. Cashmore

Source: ORCID
Added: December 19, 2019

2001 journal article

The ethylene pathway: a paradigm for plant hormone signaling and interaction

Science Signaling, 2001(70), re1.

By: J. Alonso & J. Ecker

Source: ORCID
Added: December 19, 2019

2000 journal article

Ethylene captures a metal! Metal ions are involved in ethylene perception and signal transduction

Plant and Cell Physiology, 41(5), 548–555.

By: T. Hirayama & J. Alonso

Source: ORCID
Added: December 19, 2019

2000 journal article

Involvement of NRAMP1 from Arabidopsis thaliana in iron transport

Biochem. J, 347, 749–755.

By: C. Curie, J. Alonso, M. Le Jean, J. Ecker & J. Briat

author keywords: iron deficiency; iron toxicity; Nramp; plant; transport
Source: ORCID
Added: December 19, 2019

2000 journal article

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

Nature, 408(6814), 816–820.

By: A. Theologis, J. Ecker, C. Palm, N. Federspiel, S. Kaul, O. White, J. Alonso, H. Altafi, R. Araujo, C. Bowman

Source: ORCID
Added: December 19, 2019

1999 journal article

EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis

Science, 284(5423), 2148–2152.

By: J. Alonso, T. Hirayama, G. Roman, S. Nourizadeh & J. Ecker

Source: ORCID
Added: December 19, 2019

1999 chapter

Ethylene Perception and Response in Citrus Fruit

In Biology and Biotechnology of the Plant Hormone Ethylene II (pp. 137–143).

By: X. Cubells-Martinez, J. Alonso, M. Sanchez-Ballesta & A. Granell

Source: ORCID
Added: December 19, 2019

1999 journal article

RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson Disease–Related Copper Transporter, Is Required for Ethylene Signaling in< i> Arabidopsis

RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson Disease–Related Copper Transporter, Is Required for Ethylene Signaling in< i> Arabidopsis. Cell, 97(3), 383–393.

By: T. Hirayama, J. Kieber, N. Hirayama, M. Kogan, P. Guzman, S. Nourizadeh, J. Alonso, W. Dailey, A. Dancis, J. Ecker

Source: ORCID
Added: December 19, 2019

1995 journal article

A non-photosynthetic ferredoxin gene is induced by ethylene in Citrus organs

Plant Molecular Biology, 29(6), 1211–1221.

By: J. Alonso, J. Chamarro & A. Granell

Source: ORCID
Added: December 19, 2019

1995 journal article

A putative vacuolar processing protease is regulated by ethylene and also during fruit ripening in Citrus fruit

Plant Physiology, 109(2), 541–547.

By: J. Alonso & A. Granell

Source: ORCID
Added: December 19, 2019

1995 journal article

Evidence for the involvement of ethylene in the expression of specific RNAs during maturation of the orange, a non-climacteric fruit

Plant Molecular Biology, 29(2), 385–390.

By: J. Alonso, J. Chamarro & A. Granell

Source: ORCID
Added: December 19, 2019

1992 journal article

Two dimensional gel electrophoresis patterns of total, in vivo labelled and in vitro translated polypeptides from orange flavedo during maturation and following ethylene treatment

Physiologia Plantarum, 85(2), 147–156.

By: J. Alonso, J. García‐Martínez & J. Chamarro

Source: ORCID
Added: December 19, 2019

conference paper

Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants

Merchante, K., Hu, Q., Stepanova, A. N., Alonso, J. M., & Heber, S.

By: K. Merchante, Q. Hu, A. Stepanova, J. Alonso & S. Heber

Source: ORCID
Added: December 19, 2019

Employment

Updated: March 1st, 2019 10:42

2001 - present

North Carolina State University Raleigh, NC, US
Professor Plant and Microbial Biology