Jose Alonso

Genetics

Works (46)

2019 | journal article

RGL2 controls flower development, ovule number and fertility in Arabidopsis

PLANT SCIENCE, 281, 82–92.

By: M. Dolores Gomez, C. Fuster-Almunia, J. Ocana-Cuesta, J. Alonso & M. Perez-Amador

Source: Web Of Science

2019 | article

RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data

BMC GENOMICS.

By: P. Perkins, S. Mazzoni-Putman, A. Stepanova, J. Alonso & S. Heber

Source: Web Of Science

2018 | journal article

Local Auxin Biosynthesis Is a Key Regulator of Plant Development

DEVELOPMENTAL CELL, 47(3), 306-.

By: J. Brumos, L. Robles, J. Yun, T. Vu, S. Jackson, J. Alonso, A. Stepanova

Source: NC State University Libraries

2017 | journal article

Transcriptomic analysis in strawberry fruits reveals active auxin biosynthesis and signaling in the ripe receptacle

Frontiers in Plant Science, 8.

By: E. Estrada-Johnson, F. Csukasi, C. Pizarro, J. Vallarino, Y. Kiryakova, A. Vioque, J. Brumos, N. Medina-Escobar ...

Source: NC State University Libraries

2017 | article

Transcriptomic analysis in strawberry fruits reveals active auxin biosynthesis and signaling in the ripe receptacle (vol 8, pg 889, 2017)

Frontiers in Plant Science.

By: E. Estrada-Johnson, F. Csukasi, C. Pizarro, J. Vallarino, Y. Kiryakova, A. Vioque, C. Merchante, J. Brumos ...

Source: NC State University Libraries

2017 | journal article

Translation regulation in plants: An interesting past, an exciting present and a promising future

Plant Journal, 90(4), 628–653.

By: C. Merchante, A. Stepanova & J. Alonso

Source: NC State University Libraries

2016 | review

50 years of Arabidopsis research: Highlights and future directions

New Phytologist.

By: N. Provart, J. Alonso, S. Assmann, D. Bergmann, S. Brady, J. Brkljacic, J. Browse, C. Chapple ...

Source: NC State University Libraries

2016 | journal article

Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis

Proceedings of the National Academy of Sciences of the United States of America, 113(39), 10742–10744.

By: A. Stepanova & J. Alonso

Source: NC State University Libraries

2016 | journal article

Cutting out the middle man in light-hormone interactions

Developmental Cell, 39(5), 524–526.

By: A. Stepanova & J. Alonso

Source: NC State University Libraries

2016 | journal article

Genome-wide search for translated upstream open reading frames in Arabidopsis thaliana

IEEE Transactions on Nanobioscience, 15(2), 150–159.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries

2015 | journal article

Auxin influx carriers control vascular patterning and xylem differentiation in Arabidopsis thaliana

PLoS Genetics, 11(4).

By: N. Fabregas, P. Formosa-Jordan, A. Confraria, R. Siligato, J. Alonso, R. Swarup, M. Bennett, A. Mahonen, A. Cano-Delgado, M. Ibanes

Source: NC State University Libraries

2015 | journal article

Gene-specific translation regulation mediated by the hormone-signaling molecule EIN2

Cell, 163(3), 684–697.

By: C. Merchante, J. Brumos, J. Yun, Q. Hu, K. Spencer, P. Enriquez, B. Binder, S. Heber, A. Stepanova, J. Alonso

Source: NC State University Libraries

2015 | conference paper

Mining transcript features related to translation in Arabidopsis using LASSO and random forest

In International conference on computational advances in bio and medical.

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries

2015 | journal article

Plant functional genomics methods and protocols second edition preface

Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.

By: J. Alonso & A. Stepanova

Source: NC State University Libraries

2015 | book

Plant functional genomics: Methods and protocols

New York: Humana Press.

Source: NC State University Libraries

2015 | journal article

REGULATOR OF BULB BIOGENESIS1 (RBB1) Is Involved in Vacuole Bulb Formation in Arabidopsis

PLOS ONE, 10(4), e0125621.

By: S. Han, J. Alonso & M. Rojas-Pierce

Ed(s): D. Bassham

Sources: ORCID, NC State University Libraries

2015 | journal article

A Recombineering-based gene tagging system for Arabidopsis

Bacterial Artificial Chromosomes, 2nd Edition, 1227, 233–243.

By: J. Alonso & A. Stepanova

Source: NC State University Libraries

2015 | journal article

Transcriptional control of tissue formation throughout root development

Science, 350(6259), 426–430.

By: M. Moreno-Risueno, R. Sozzani, G. Yardimci, J. Petricka, T. Vernoux, I. Blilou, J. Alonso, C. Winter ...

Source: NC State University Libraries

2015 | conference paper

A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana

In Bioinformatics research and applications (isbra 2015) (Vol. 9096, pp. 138–149).

By: Q. Hu, C. Merchante, A. Stepanova, J. Alonso & S. Heber

Source: NC State University Libraries

2014 | journal article

Genetic aspects of auxin biosynthesis and its regulation

Physiologia Plantarum, 151(1), 3–12.

By: J. Brumos, J. Alonso & A. Stepanova

Source: NC State University Libraries

2014 | journal article

Systems analysis of auxin transport in the arabidopsis root apex

Plant Cell, 26(3), 862–875.

By: L. Band, D. Wells, J. Fozard, T. Ghetiu, A. French, M. Pound, M. Wilson, L. Yu ...

Source: NC State University Libraries

2013 | journal article

Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity

Nature Communications, 4.

By: S. Pietra, A. Gustavsson, C. Kiefer, L. Kalmbach, P. Horstedt, Y. Ikeda, A. Stepanova, J. Alonso, M. Grebe

Source: NC State University Libraries

2013 | review

Ethylene signaling: Simple ligand, complex regulation

Current Opinion in Plant Biology.

By: C. Merchante, J. Alonso & A. Stepanova

Source: NC State University Libraries

2013 | journal article

Kinetic analysis of Arabidopsis glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition

Biochemical Journal (London, England : 1984), 450, 37–46.

By: J. Kopycki, E. Wieduwild, J. Kohlschmidt, W. Brandt, A. Stepanova, J. Alonso, M. Pedras, S. Abel, C. Grubb

Source: NC State University Libraries

2013 | journal article

Molecular mechanisms of ethyleneauxin interaction

Molecular Plant, 6(6), 1734–1737.

By: L. Robles, A. Stepanova & J. Alonso

Source: NC State University Libraries

2013 | journal article

local auxin sources orient the apical-basal axis in arabidopsis embryos

Current Biology, 23(24), 2506–2512.

By: H. Robert, P. Grones, A. Stepanova, L. Robles, A. Lokerse, J. Alonso, D. Weijers, J. Friml

Source: NC State University Libraries

2012 | journal article

AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during arabidopsis development

Plant Cell, 24(7), 2874–2885.

By: B. Peret, K. Swarup, A. Ferguson, M. Seth, Y. Yang, S. Dhondt, N. James, I. Casimiro ...

Source: NC State University Libraries

2011 | journal article

The Arabidopsis YUCCA1 flavin monooxygenase functions in the indole-3-pyruvic acid branch of auxin biosynthesis

Plant Cell, 23(11), 3961–3973.

By: A. Stepanova, J. Yun, L. Robles, O. Novak, W. He, H. Guo, K. Ljung, J. Alonso

Source: NC State University Libraries

2011 | journal article

Bypassing transcription: A shortcut in cytokinin-auxin interactions

Developmental Cell, 21(4), 608–610.

By: A. Stepanova & J. Alonso

Source: NC State University Libraries

2011 | journal article

A Small-molecule screen Identifies L-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis

Plant Cell, 23(11), 3944–3960.

By: W. He, J. Brumos, H. Li, Y. Ji, M. Ke, X. Gong, Q. Zeng, W. Li ...

Source: NC State University Libraries

2011 | journal article

A recombineering-based gene tagging system for Arabidopsis

Plant Journal, 66(4), 712–723.

By: R. Zhou, L. Benavente, A. Stepanova & J. Alonso

Source: NC State University Libraries

2009 | review

Ethylene signaling and response: Where different regulatory modules meet

Current Opinion in Plant Biology.

By: A. Stepanova & J. Alonso

Source: NC State University Libraries

2009 | journal article

Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis

Nature Cell Biology, 11(6), 731–70.

By: Y. Ikeda, S. Men, U. Fischer, A. Stepanova, J. Alonso, K. Ljung, M. Grebe

Source: NC State University Libraries

2008 | journal article

TAA1-mediated auxin biosynthesis is essential for hormone crosstalk and plant development

Cell, 133(1), 177–191.

By: A. Stepanova, J. Robertson-Hoyt, J. Yun, L. Benavente, D. Xie, K. DoleZal, A. Schlereth, G. Jurgens, J. Alonso

Source: NC State University Libraries

2007 | journal article

Multilevel interactions between ethylene and auxin in Arabidopsis roots

Plant Cell, 19(7), 2169–2185.

By: A. Stepanova, J. Yun, A. Likhacheva & J. Alonso

Source: NC State University Libraries

2007 | journal article

A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis

Plant Cell, 19(8), 2403–2416.

By: H. Li, Z. He, G. Lu, S. Lee, J. Alonso, J. Ecker, S. Luan

Source: NC State University Libraries

2007 | journal article

An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome

Nature Protocols, 2(11), 2910–2917.

By: R. O'Malley, J. Alonso, C. Kim, T. Leisse & J. Ecker

Source: NC State University Libraries

2006 | journal article

Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis

Plant Cell, 18(7), 1704–1721.

By: A. Rudella, G. Friso, J. Alonso, J. Ecker & K. Van Wijk

Source: NC State University Libraries

2006 | journal article

Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1

Science, 314(5803), 1295–1298.

By: S. Kim, T. Punshon, A. Lanzirotti, L. Li, J. Alonso, J. Ecker, J. Kaplan, M. Guerinot

Source: NC State University Libraries

2006 | journal article

Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis

Nature Reviews. Genetics, 7(7), 524–536.

By: J. Alonso & J. Ecker

Source: NC State University Libraries

2019 | journal article

An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance

Plant Journal, 41(2), 304–318.

By: G. Liu, E. Holub, J. Alonso, J. Ecker & P. Fobert

Source: NC State University Libraries

2019 | journal article

Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs

Physiologia Plantarum, 123(2), 195–206.

By: A. Stepanova & J. Alonso

Source: NC State University Libraries

2019 | journal article

A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis

Plant Cell, 17(8), 2230–2242.

By: A. Stepanova, J. Hoyt, A. Hamilton & J. Alonso

Source: NC State University Libraries

2004 | journal article

Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana

Molecular Plant-Microbe Interactions, 17, 696–706.

By: C. Pfund, J. Tans-Kersten, F. Dunning, J. Alonso, J. Ecker, C. Allen, A. Bent

Source: NC State University Libraries

2004 | journal article

The ethylene signaling pathway

Science, 306(5701), 1513–1515.

By: J. Alonso & A. Stepanova

Source: NC State University Libraries

2003 | chapter

T-DNA mutagenesis in Arabidopsis

In Plant functional genomics. Totowa, NJ: Humana Press.

By: A. Stepanova & J. Alonso

Source: NC State University Libraries