Works (135)
Updated: September 7th, 2023 04:35
2022 review
Deciphering the molecular basis of tissue-specific gene expression in plants: Can synthetic biology help?
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 68.
co-author countries:
United States of America 🇺🇸
author keywords: Tissue specificity; Gene expression; Synthetic biology; Transcription; factor; Epigenetics; Single cell; Transcriptomics; Logic gate; Promoter; Cis-regulatory element
MeSH headings : Computational Biology; Gene Expression; Gene Regulatory Networks / genetics; Plants / genetics; Plants / metabolism; Promoter Regions, Genetic / genetics; Synthetic Biology; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: June 12, 2022
2022 journal article
Tandem C2 domains mediate dynamic organelle targeting of a DOCK family guanine nucleotide exchange factor
JOURNAL OF CELL SCIENCE, 135(7).
co-author countries:
United States of America 🇺🇸
author keywords: DOCK; Rac/Rho-of-plants; Lipid binding; Organelle association; Small GTPases
MeSH headings : C2 Domains; Cytokinesis; Guanine Nucleotide Exchange Factors / metabolism; Monomeric GTP-Binding Proteins / metabolism; Organelles / metabolism
doi.org (publisher)
Sources: ORCID, Web Of Science
Added: April 14, 2022
2022 journal article
To Fight or to Grow: The Balancing Role of Ethylene in Plant Abiotic Stress Responses
PLANTS-BASEL, 11(1).
co-author countries:
United States of America 🇺🇸
author keywords: ethylene; abiotic stress; hormone crosstalk; growth and defense tradeoff
Sources: Web Of Science, ORCID
Added: December 24, 2021
2021 journal article
A G protein-coupled receptor-like module regulates cellulose synthase secretion from the endomembrane system in Arabidopsis
DEVELOPMENTAL CELL, 56(10), 1484-+.
co-author countries:
Australia 🇦🇺 Canada 🇨🇦 China 🇨🇳 Germany 🇩🇪 Denmark 🇩🇰 Netherlands 🇳🇱 Singapore 🇸🇬 United States of America 🇺🇸
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Cell Membrane / metabolism; Cell Wall / metabolism; GTP-Binding Proteins / genetics; GTP-Binding Proteins / metabolism; Glucosyltransferases / metabolism; Membrane Proteins / metabolism; Multiprotein Complexes / metabolism; Mutation / genetics; Protein Binding; Receptors, G-Protein-Coupled / metabolism; Seedlings / growth & development; Seedlings / ultrastructure; Signal Transduction; Stress, Physiological; trans-Golgi Network / metabolism; trans-Golgi Network / ultrastructure
Sources: Web Of Science, ORCID
Added: June 10, 2021
2021 journal article
Auxin Interactions with Other Hormones in Plant Development
Cold Spring Harbor Perspectives in Biology, 13(10), a039990.
co-author countries:
United States of America 🇺🇸
MeSH headings : Indoleacetic Acids / metabolism; Plant Development; Plant Growth Regulators / metabolism
Sources: Crossref, ORCID, Web Of Science
Added: April 27, 2021
2021 review
Leveraging synthetic biology approaches in plant hormone research
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 60.
Sources: Web Of Science, ORCID
Added: June 28, 2021
2020 journal article
An Improved Recombineering Toolset for Plants
The Plant Cell.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Chromosomes, Artificial, Bacterial; Gene Editing / methods; Genes, Reporter; Genetic Engineering / methods; Plants / genetics; Plants, Genetically Modified / genetics; Recombination, Genetic
Source: ORCID
Added: January 11, 2020
2020 journal article
Development of a relative quantification method for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings
RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 34(6).
co-author countries:
United States of America 🇺🇸
MeSH headings : Arabidopsis / chemistry; Arabidopsis / genetics; Arabidopsis Proteins / genetics; Indoleacetic Acids / analysis; Indoles / analysis; Mutation; Oximes / analysis; Oxygenases / genetics; Seedlings / chemistry; Seedlings / genetics; Spectrometry, Mass, Electrospray Ionization / methods; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization / methods
Sources: Web Of Science, ORCID
Added: March 10, 2020
2020 journal article
Gibberellin-mediated RGA-LIKE1 degradation regulates embryo sac development in Arabidopsis
JOURNAL OF EXPERIMENTAL BOTANY, 71(22), 7059–7072.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
author keywords: Arabidopsis; DELLA; development; embryo sac; gibberellin; megagametogenesis; ovule; RGL1
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Gene Expression Regulation, Plant; Gibberellins; Ovule / genetics; Ovule / metabolism
Sources: Web Of Science, ORCID
Added: February 15, 2021
2020 journal article
Regulation of ovule initiation by gibberellins and brassinosteroids in tomato and Arabidopsis: two plant species, two molecular mechanisms
The Plant Journal.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
author keywords: Arabidopsis thaliana; tomato; Solanum lycopersicum; gibberellins; brassinosteroids; ovule; reproductive development; hormone interaction
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Brassinosteroids / metabolism; Gene Expression Regulation, Plant / genetics; Gene Expression Regulation, Plant / physiology; Gibberellins / metabolism; Solanum lycopersicum / genetics; Solanum lycopersicum / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Signal Transduction / genetics; Signal Transduction / physiology
Source: ORCID
Added: February 14, 2020
2020 chapter
RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data
In I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums, & A. Zelikovsky (Eds.), Computational Advances in Bio and Medical Sciences (pp. 121–133).
co-author countries:
United States of America 🇺🇸
Ed(s): I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums & A. Zelikovsky
Event: ICCABS 2019
Sources: Crossref, ORCID
Added: October 9, 2021
2020 journal article
Structure–Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes
Plant Physiology, 183(3), 1110–1125.
co-author countries:
United States of America 🇺🇸
MeSH headings : Alleles; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Binding Sites; Carbon-Sulfur Lyases / chemistry; Carbon-Sulfur Lyases / genetics; Carbon-Sulfur Lyases / metabolism; Cotyledon / genetics; Genetic Complementation Test; Genetic Loci; Heterozygote; Models, Molecular; Mutation / genetics; Phenotype; Plants, Genetically Modified; Protein Multimerization; Structure-Activity Relationship
Source: ORCID
Added: July 2, 2020
2019 article
An improved plant toolset for high-throughput recombineering
Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2019, June 3). (Vol. 6). Vol. 6.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
Source: ORCID
Added: December 19, 2019
2019 article
From Ethylene-Auxin Interactions to Auxin Biosynthesis and Signal Integration
Stepanova, A. N., & Alonso, J. M. (2019, July). PLANT CELL, Vol. 31, pp. 1393–1394.
co-author countries:
United States of America 🇺🇸
MeSH headings : Ethylenes / metabolism; Gene Expression Regulation, Plant; Indoleacetic Acids / metabolism; Models, Biological; Plant Proteins / metabolism; Plant Roots / metabolism; Signal Transduction
Sources: Web Of Science, ORCID
Added: July 29, 2019
2019 journal article
RGL2 controls flower development, ovule number and fertility in Arabidopsis
PLANT SCIENCE, 281, 82–92.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
author keywords: Gibberellin; DELLA; RGL2; Arabidopsis; Development; Ovule
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Flowers / genetics; Flowers / metabolism; Flowers / physiology; Gene Expression Regulation, Plant / genetics; Gene Expression Regulation, Plant / physiology; Germination / genetics; Germination / physiology; Gibberellins / metabolism
Sources: Web Of Science, ORCID
Added: April 2, 2019
2019 article
RiboStreamR: a web application for quality control, analysis, and visualization of Ribo-seq data
Perkins, P., Mazzoni-Putman, S., Stepanova, A., Alonso, J., & Heber, S. (2019, June 6). BMC GENOMICS, Vol. 20.
co-author countries:
United States of America 🇺🇸
author keywords: Ribo-seq; Next-generation sequencing; Data analysis; Web application
MeSH headings : Computer Graphics; Genomics / methods; High-Throughput Nucleotide Sequencing / methods; Humans; Protein Biosynthesis; Quality Control; RNA, Messenger / genetics; RNA, Messenger / metabolism; Ribosomes / metabolism; Sequence Analysis, RNA; Software; Transcriptome; Web Browser
Sources: Web Of Science, ORCID
Added: July 1, 2019
2018 journal article
A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate
Nature Communications, 9(1).
co-author countries:
Germany 🇩🇪 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 India 🇮🇳 Sweden 🇸🇪 United States of America 🇺🇸
Contributors: R. Bhosale *, J. Giri *, B. Pandey *, R. Giehl *, A. Hartmann*, R. Traini*, J. Truskina*, N. Leftley *
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Basic Helix-Loop-Helix Transcription Factors / genetics; Basic Helix-Loop-Helix Transcription Factors / metabolism; Gene Expression Regulation, Plant; Gravitropism / physiology; Indoleacetic Acids / metabolism; Organogenesis, Plant / drug effects; Organogenesis, Plant / genetics; Phosphates / deficiency; Phosphates / pharmacology; Plant Growth Regulators / metabolism; Plant Roots / drug effects; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Plants, Genetically Modified; Stress, Physiological; Transcription Factors / genetics; Transcription Factors / metabolism
Sources: Crossref, ORCID
Added: December 19, 2019
2018 journal article
Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate
Nature Communications, 9(1), 1818.
co-author countries:
Germany 🇩🇪 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 India 🇮🇳 Sweden 🇸🇪 United States of America 🇺🇸
Contributors: R. Bhosale *, J. Giri *, B. Pandey *, R. Giehl *, A. Hartmann*, R. Traini*, J. Truskina*, N. Leftley *
Sources: Crossref, ORCID
Added: December 19, 2019
2018 journal article
Gibberellins negatively modulate ovule number in plants
Development, 145(13), dev163865.
co-author countries:
Argentina 🇦🇷 Spain 🇪🇸 United States of America 🇺🇸
author keywords: Ovule; Seed; Gibberellin; Auxin; Arabidopsis; Tomato
MeSH headings : Arabidopsis / cytology; Arabidopsis / embryology; Arabidopsis Proteins / metabolism; Gibberellins / metabolism; Ovule / cytology; Ovule / embryology
Sources: Crossref, ORCID
Added: October 9, 2021
2018 journal article
Local Auxin Biosynthesis Is a Key Regulator of Plant Development
DEVELOPMENTAL CELL, 47(3), 306-+.
co-author countries:
United States of America 🇺🇸
Contributors: J. Brumos n, L. Robles n, J. Yun n, T. Vu n, S. Jackson n, J. Alonso n, A. Stepanova n
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Biological Transport; Ethylenes / metabolism; Flowers / metabolism; Gene Expression Regulation, Plant / genetics; Indoleacetic Acids / metabolism; Meristem / embryology; Meristem / metabolism; Morphogenesis; Oxygenases; Plant Development / genetics; Plant Growth Regulators / genetics; Plant Growth Regulators / metabolism; Plant Roots / embryology; Plant Roots / genetics; Plant Roots / metabolism; Spatio-Temporal Analysis
Sources: Web Of Science, ORCID
Added: November 26, 2018
2018 journal article
Microtubule-Dependent Confinement of a Cell Signaling and Actin Polymerization Control Module Regulates Polarized Cell Growth
Current Biology, 28(15), 2459–2466.e4.
co-author countries:
United States of America 🇺🇸
MeSH headings : Actins / chemistry; Arabidopsis / physiology; Arabidopsis Proteins / metabolism; Cell Cycle / physiology; Microtubules / physiology; Polymerization; Signal Transduction
Sources: Crossref, ORCID
Added: January 25, 2020
2017 article
Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle (vol 8, pg 889, 2017)
Estrada-Johnson, E., Csukasi, F., Pizarro, C. M., Vallarino, J. G., Kiryakova, Y., Vioque, A., … Valpuesta, V. (2017, July 24). FRONTIERS IN PLANT SCIENCE, Vol. 8.
co-author countries:
Germany 🇩🇪 Spain 🇪🇸 Italy 🇮🇹 United States of America 🇺🇸
author keywords: auxin; fruit; strawberry; transcriptome regulation; ripening
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Transcriptomic analysis in strawberry fruits reveals active auxin biosynthesis and signaling in the ripe receptacle
Frontiers in Plant Science, 8.
Source: NC State University Libraries
Added: August 6, 2018
2017 journal article
Translation regulation in plants: an interesting past, an exciting present and a promising future
PLANT JOURNAL, 90(4), 628–653.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
Contributors: C. Merchante *, A. Stepanova n & J. Alonso n
author keywords: translation; upstream open reading frames; internal ribosomal entry sites; gene-specific translation; global regulation of translation; RNA-binding protein
MeSH headings : Gene Expression Regulation / genetics; Gene Expression Regulation / physiology; Open Reading Frames / genetics; Plants / genetics; Plants / metabolism; Protein Biosynthesis / genetics; Protein Biosynthesis / physiology; RNA, Plant / genetics; RNA, Plant / metabolism; Ribosomes / genetics; Ribosomes / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 report
Translation regulation of uORFs-containing genes in Arabidopsis
Source: NC State University Libraries
Added: October 14, 2021
2016 review
50 years of Arabidopsis research: Highlights and future directions
[Review of ]. New Phytologist, 209(3), 921–944.
Source: NC State University Libraries
Added: August 6, 2018
2016 journal article
A Ribosome Footprinting Protocol for Plants
BIO-PROTOCOL, 6(21).
Sources: Crossref, ORCID
Added: October 10, 2021
2016 article
Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis
Stepanova, A. N., & Alonso, J. M. (2016, September 27). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 113, pp. 10742–10744.
co-author countries:
United States of America 🇺🇸
Contributors: A. Stepanova n & J. Alonso n
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Genes, Plant; Homeostasis; Indoleacetic Acids / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 article
Cutting Out the Middle Man in Light-Hormone Interactions
Stepanova, A. N., & Alonso, J. M. (2016, December 5). DEVELOPMENTAL CELL, Vol. 39, pp. 524–526.
co-author countries:
United States of America 🇺🇸
Contributors: A. Stepanova n & J. Alonso n
MeSH headings : Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Ethylenes / metabolism; Gene Expression Regulation, Plant; Nuclear Proteins / genetics; Transcription Factors / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
Genome-wide search for translated upstream open reading frames in Arabidopsis thaliana
IEEE Transactions on Nanobioscience, 15(2), 150–159.
Source: NC State University Libraries
Added: August 6, 2018
2016 report
Hormone-Mediated Gene-Specific Translation Regulation
http://hdl.handle.net/10630/11885
Source: NC State University Libraries
Added: October 14, 2021
2015 journal article
A Recombineering-based gene tagging system for Arabidopsis
Bacterial Artificial Chromosomes, 2nd Edition, 1227, 233–243.
Source: NC State University Libraries
Added: August 6, 2018
2015 chapter
A Stacking-Based Approach to Identify Translated Upstream Open Reading Frames in Arabidopsis Thaliana
In Bioinformatics Research and Applications (Vol. 9096, pp. 138–149).
co-author countries:
United States of America 🇺🇸
Contributors: Q. Hu n, C. Merchante n, A. Stepanova n , J. Alonso n & S. Heber n
author keywords: uORF; Translation; Ribosome footprinting; Stacking; Classification; Arabidopsis thaliana
Sources: Crossref, ORCID
Added: December 19, 2019
2015 conference paper
A stacking-based approach to identify translated upstream open reading frames in Arabidopsis thaliana
Bioinformatics research and applications (isbra 2015), 9096, 138–149.
Source: NC State University Libraries
Added: August 6, 2018
2015 journal article
Auxin Influx Carriers Control Vascular Patterning and Xylem Differentiation in Arabidopsis thaliana
PLOS GENETICS, 11(4).
co-author countries:
Spain 🇪🇸 Finland 🇫🇮 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Differentiation / genetics; Gene Expression Regulation, Plant; Indoleacetic Acids; Membrane Transport Proteins / genetics; Membrane Transport Proteins / metabolism; Plant Development / genetics; Plant Shoots / genetics; Plant Shoots / growth & development; Xylem / genetics; Xylem / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Bird and Scarecrow proteins organize tissue formation in Arabidopsis roots
Science, 350(6259), 426–430.
co-author countries:
Germany 🇩🇪 Spain 🇪🇸 France 🇫🇷 Netherlands 🇳🇱 United States of America 🇺🇸
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / metabolism; Cell Division / genetics; Cell Lineage / genetics; Gene Expression Regulation, Plant; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Transcription Factors / metabolism; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
CESA TRAFFICKING INHIBITOR Inhibits Cellulose Deposition and Interferes with the Trafficking of Cellulose Synthase Complexes and Their Associated Proteins KORRIGAN1 and POM2/CELLULOSE SYNTHASE INTERACTIVE PROTEIN
Plant Physiology, 167(2), 381–393.
co-author countries:
Australia 🇦🇺 Germany 🇩🇪 France 🇫🇷 Hungary 🇭🇺 United States of America 🇺🇸
MeSH headings : Anisotropy; Arabidopsis / cytology; Arabidopsis / enzymology; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Benzamides / pharmacology; Carrier Proteins / metabolism; Cell Compartmentation / drug effects; Cell Membrane / drug effects; Cell Membrane / metabolism; Cellulase / metabolism; Cellulose / metabolism; Dinitrobenzenes / pharmacology; Enzyme Inhibitors / pharmacology; Glucose / metabolism; Glucosyltransferases / metabolism; Green Fluorescent Proteins / metabolism; Hypocotyl / drug effects; Hypocotyl / metabolism; Membrane Proteins / metabolism; Microtubules / drug effects; Microtubules / metabolism; Multiprotein Complexes / metabolism; Protein Transport / drug effects; Sulfanilamides / pharmacology
Sources: Crossref, ORCID
Added: October 9, 2021
2015 journal article
Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2
CELL, 163(3), 684–697.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
Contributors: C. Merchante n, J. Brumos n, J. Yun n, Q. Hu n, K. Spencer n, P. Enríquez n, B. Binder *, S. Heber n , A. Stepanova n , J. Alonso n
MeSH headings : 3' Untranslated Regions; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; DNA-Binding Proteins; Ethylenes / metabolism; F-Box Proteins / genetics; Gene Expression Regulation, Plant; Nuclear Proteins / metabolism; Protein Biosynthesis; RNA, Messenger / metabolism; Receptors, Cell Surface / metabolism; Ribosomes / metabolism; Signal Transduction; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 conference paper
Mining transcript features related to translation in Arabidopsis using LASSO and random forest
International conference on computational advances in bio and medical.
co-author countries:
United States of America 🇺🇸
Contributors: Q. Hu n, C. Merchante n, A. Stepanova n , J. Alonso n & S. Heber n
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2015 journal article
Plant functional genomics methods and protocols second edition preface
Plant Functional Genomics: Methods and Protocols, 2nd Edition, 1284, V-.
Source: NC State University Libraries
Added: August 6, 2018
2015 book
Plant functional genomics: Methods and protocols
In J. M. Alonso & A. N. Stepanova (Eds.), Plant Functional Genomics: Methods and Protocols: Second Edition (2nd ed., pp. 1–526).
Contributors: J. Alonso & A. Stepanova*
Ed(s): J. Alonso & A. Stepanova*
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Regulator of bulb biogenesis1 (RBB1) is involved in vacuole bulb formation in arabidopsis
PLoS One, 10(4), e0125621.
co-author countries:
United States of America 🇺🇸
Contributors: S. Han n, J. Alonso n & M. Rojas-Pierce n
Ed(s): D. Bassham
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2014 chapter
Arabidopsis Transformation with Large Bacterial Artificial Chromosomes
In Arabidopsis Protocols (pp. 271–283).
Contributors: J. Alonso & A. Stepanova
Source: ORCID
Added: December 19, 2019
2014 journal article
Genetic aspects of auxin biosynthesis and its regulation
PHYSIOLOGIA PLANTARUM, 151(1), 3–12.
co-author countries:
United States of America 🇺🇸
Contributors: J. Brumos n, J. Alonso n & A. Stepanova n
MeSH headings : Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Indoleacetic Acids / metabolism; Mixed Function Oxygenases / genetics; Mixed Function Oxygenases / metabolism; Plants / enzymology; Plants / genetics; Plants / metabolism; Tryptophan Transaminase / genetics; Tryptophan Transaminase / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Systems analysis of auxin transport in the arabidopsis root apex
Plant Cell, 26(3), 862–875.
Source: NC State University Libraries
Added: August 6, 2018
2014 journal article
The Arabidopsis 14-3-3 Protein RARE COLD INDUCIBLE 1A Links Low-Temperature Response and Ethylene Biosynthesis to Regulate Freezing Tolerance and Cold Acclimation
The Plant Cell, 26(8), 3326–3342.
co-author countries:
Spain 🇪🇸 United States of America 🇺🇸
MeSH headings : 14-3-3 Proteins / genetics; 14-3-3 Proteins / metabolism; 14-3-3 Proteins / physiology; Acclimatization / genetics; Arabidopsis / genetics; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Arabidopsis Proteins / physiology; Cold Temperature; Freezing; Gene Expression Regulation, Plant; Stress, Physiological
Sources: Crossref, ORCID
Added: October 9, 2021
2013 journal article
Arabidopsis SABRE and CLASP interact to stabilize cell division plane orientation and planar polarity
NATURE COMMUNICATIONS, 4.
co-author countries:
Switzerland 🇨🇭 Czechia 🇨🇿 Sweden 🇸🇪 United States of America 🇺🇸
Contributors: S. Pietra *, A. Gustavsson*, C. Kiefer*, L. Kalmbach *, P. Hörstedt*, Y. Ikeda *, A. Stepanova n , J. Alonso n, M. Grebe *
MeSH headings : Alleles; Amino Acid Sequence; Arabidopsis / cytology; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Base Sequence; Cell Division / physiology; Cell Polarity / physiology; Chromosomes, Plant; Gene Expression Regulation, Plant / physiology; Intracellular Signaling Peptides and Proteins / genetics; Intracellular Signaling Peptides and Proteins / metabolism; Microtubule-Associated Proteins / genetics; Microtubule-Associated Proteins / metabolism; Phylogeny
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 review
Ethylene signaling: simple ligand, complex regulation
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 16(5), 554–560.
co-author countries:
United States of America 🇺🇸
Contributors: C. Merchante n, J. Alonso n & A. Stepanova n
MeSH headings : Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Ethylenes / metabolism; Gene Expression Regulation, Plant; Gene Regulatory Networks; Models, Biological; Plant Growth Regulators / metabolism; Protein Kinases / genetics; Protein Kinases / metabolism; Receptors, Cell Surface / genetics; Receptors, Cell Surface / metabolism; Signal Transduction
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Functional Characterization of Type-B Response Regulators in the Arabidopsis Cytokinin Response
Plant Physiology, 162(1), 212–224.
co-author countries:
United States of America 🇺🇸
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytokinins / metabolism; Gene Expression Regulation, Plant; Multigene Family; Mutagenesis, Insertional; Phenotype; Plant Growth Regulators / metabolism; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Plants, Genetically Modified; RNA, Plant / genetics; Regulatory Sequences, Nucleic Acid; Seedlings / genetics; Seedlings / growth & development; Seedlings / metabolism; Signal Transduction / physiology; Transcription Factors / genetics; Transcription Factors / metabolism; Transgenes
Sources: Crossref, ORCID
Added: October 9, 2021
2013 journal article
Kinetic analysis of Arabidopsis glucosyltransferase UGT74B1 illustrates a general mechanism by which enzymes can escape product inhibition
BIOCHEMICAL JOURNAL, 450(1), 37–46.
co-author countries:
Canada 🇨🇦 Germany 🇩🇪 United States of America 🇺🇸
Contributors: J. Kopycki*, E. Wieduwild*, J. Kohlschmidt*, W. Brandt *, A. Stepanova n , J. Alonso n, M. Pedras *, S. Abel *, C. Grubb*
author keywords: glucosinolate; glycosyltransferase; ordered binding; product inhibition; UDP-glycosyltransferase (UGT)
MeSH headings : Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Genome, Plant; Glucosyltransferases / chemistry; Glucosyltransferases / metabolism; Kinetics; Leucine / genetics; Leucine / metabolism; Models, Molecular; Mutation; Phenotype; Plants, Genetically Modified; Serine / genetics; Serine / metabolism; Substrate Specificity; Uridine Diphosphate Glucose / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Local Auxin Sources Orient the Apical-Basal Axis in Arabidopsis Embryos
CURRENT BIOLOGY, 23(24), 2506–2512.
co-author countries:
Austria 🇦🇹 Belgium 🇧🇪 Czechia 🇨🇿 Netherlands 🇳🇱 United States of America 🇺🇸
Contributors: H. Robert *, P. Grones *, A. Stepanova n , L. Robles n, A. Lokerse*, J. Alonso n, D. Weijers *, J. Friml *
MeSH headings : Arabidopsis / embryology; Arabidopsis Proteins / metabolism; Body Patterning / drug effects; Indoleacetic Acids / metabolism; Indoleacetic Acids / pharmacology; Membrane Transport Proteins / metabolism; Plant Growth Regulators / metabolism; Plant Growth Regulators / pharmacology; Plant Growth Regulators / physiology; Protein Transport; Seeds / drug effects; Seeds / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Molecular Mechanisms of EthyleneAuxin Interaction
MOLECULAR PLANT, 6(6), 1734–1737.
co-author countries:
United States of America 🇺🇸
Contributors: L. Robles n, A. Stepanova n & J. Alonso n
MeSH headings : Ethylenes / metabolism; Indoleacetic Acids / metabolism; Plant Growth Regulators / metabolism; RNA Processing, Post-Transcriptional; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Molecular mechanisms of ethylene–auxin interactions
Molecular Plant, sst113.
Contributors: L. Robles, A. Stepanova & J. Alonso
Source: ORCID
Added: December 19, 2019
2012 journal article
AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during Arabidopsis development
The Plant Cell Online, 24(7), 2874–2885.
co-author countries:
Belgium 🇧🇪 Spain 🇪🇸 France 🇫🇷 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
Contributors: B. Péret *, K. Swarup*, A. Ferguson*, M. Seth*, Y. Yang *, S. Dhondt *, N. James *, I. Casimiro*, P. Perry*, A. Syed *
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Biological Transport; Body Patterning; Cotyledon / cytology; Cotyledon / genetics; Cotyledon / growth & development; Cotyledon / metabolism; Gene Knockout Techniques; Indoleacetic Acids / metabolism; Membrane Transport Proteins / genetics; Membrane Transport Proteins / metabolism; Multigene Family; Mutagenesis, Insertional; Phenotype; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Plant Vascular Bundle / cytology; Plant Vascular Bundle / genetics; Plant Vascular Bundle / growth & development; Plant Vascular Bundle / metabolism; Plants, Genetically Modified; Seedlings / cytology; Seedlings / genetics; Seedlings / growth & development; Seedlings / metabolism
Source: ORCID
Added: December 19, 2019
2012 journal article
AUX/LAX genes encode a family of auxin influx transporters that perform distinct functions during arabidopsis development
Plant Cell, 24(7), 2874–2885.
Source: NC State University Libraries
Added: August 6, 2018
2011 journal article
A Small-Molecule Screen Identifies l-Kynurenine as a Competitive Inhibitor of TAA1/TAR Activity in Ethylene-Directed Auxin Biosynthesis and Root Growth in Arabidopsis
The Plant Cell, 23(11), 3944–3960.
co-author countries:
China 🇨🇳 United States of America 🇺🇸
Contributors: W. He*, J. Brumos n, H. Li *, Y. Ji*, M. Ke*, X. Gong*, Q. Zeng*, W. Li*, X. Zhang *, F. An*
MeSH headings : Arabidopsis / drug effects; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Cell Nucleus / metabolism; DNA-Binding Proteins; Enzyme Inhibitors / pharmacology; Ethylenes / metabolism; Ethylenes / pharmacology; F-Box Proteins / metabolism; Indoleacetic Acids / metabolism; Indoleacetic Acids / pharmacology; Kynurenine / chemistry; Kynurenine / metabolism; Kynurenine / pharmacology; Models, Molecular; Nuclear Proteins / metabolism; Plant Roots / drug effects; Plant Roots / growth & development; Plant Roots / metabolism; Small Molecule Libraries; Transcription Factors / metabolism; Tryptophan Transaminase / antagonists & inhibitors; Tryptophan Transaminase / genetics; Tryptophan Transaminase / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2011 journal article
A recombineering-based gene tagging system for Arabidopsis
PLANT JOURNAL, 66(4), 712–723.
co-author countries:
United States of America 🇺🇸
Contributors: R. Zhou n, L. Benavente n, A. Stepanova n & J. Alonso n
author keywords: Arabidopsis; recombineering; Aux; IAA; gene tagging; fluorescent; proteins
MeSH headings : Agrobacterium tumefaciens / genetics; Agrobacterium tumefaciens / metabolism; Arabidopsis / genetics; Arabidopsis / metabolism; Chromosomes, Artificial, Bacterial / genetics; DNA Primers / genetics; Escherichia coli; Gene Expression Profiling / methods; Genetic Engineering / methods; Genetic Vectors; Green Fluorescent Proteins / metabolism; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Point Mutation; Recombination, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 article
Bypassing Transcription: A Shortcut in Cytokinin-Auxin Interactions
Stepanova, A. N., & Alonso, J. M. (2011, October 18). DEVELOPMENTAL CELL, Vol. 21, pp. 608–610.
co-author countries:
United States of America 🇺🇸
Contributors: A. Stepanova n & J. Alonso n
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 journal article
The Arabidopsis YUCCA1 Flavin Monooxygenase Functions in the Indole-3-Pyruvic Acid Branch of Auxin Biosynthesis
PLANT CELL, 23(11), 3961–3973.
co-author countries:
China 🇨🇳 Czechia 🇨🇿 Sweden 🇸🇪 United States of America 🇺🇸
Contributors: A. Stepanova n , J. Yun n, L. Robles n, O. Novak *, W. He*, H. Guo *, K. Ljung *, J. Alonso n
MeSH headings : Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cytochrome P-450 Enzyme System / genetics; Cytochrome P-450 Enzyme System / metabolism; Gene Knockdown Techniques; Indoleacetic Acids / metabolism; Indoles / metabolism; Oxygenases / genetics; Oxygenases / metabolism; Tryptophan Transaminase / genetics; Tryptophan Transaminase / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana
Genetics, 183(3), 979–1003.
co-author countries:
United States of America 🇺🇸
Contributors: A. Tsuchisaka*, G. Yu*, H. Jin *, J. Alonso *, J. Ecker *, X. Zhang *, S. Gao*, A. Theologis*
MeSH headings : Amino Acids, Cyclic / metabolism; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Epistasis, Genetic; Ethylenes / biosynthesis; Flowers / genetics; Flowers / growth & development; Flowers / metabolism; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Genetic Complementation Test; Genome, Plant / genetics; Isoenzymes / genetics; Isoenzymes / metabolism; Lyases / genetics; Lyases / metabolism; Mutation; Plant Diseases / genetics; Plant Diseases / microbiology; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction; S-Adenosylmethionine / metabolism; Time Factors
Source: ORCID
Added: December 19, 2019
2009 review
Ethylene signaling and response: where different regulatory modules meet
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 12(5), 548–555.
co-author countries:
United States of America 🇺🇸
Contributors: A. Stepanova n & J. Alonso n
MeSH headings : Ethylenes / metabolism; Gene Expression Regulation, Plant; Indoleacetic Acids / metabolism; Plant Development; Plant Growth Regulators / metabolism; Plant Proteins / metabolism; Plants / metabolism; Receptors, Cell Surface / metabolism; Signal Transduction
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Local auxin biosynthesis modulates gradient-directed planar polarity in Arabidopsis
NATURE CELL BIOLOGY, 11(6), 731–U70.
co-author countries:
Germany 🇩🇪 Sweden 🇸🇪 United States of America 🇺🇸
Contributors: Y. Ikeda *, S. Men *, U. Fischer*, A. Stepanova n , J. Alonso n, K. Ljung *, M. Grebe *
MeSH headings : Animals; Arabidopsis / anatomy & histology; Arabidopsis / metabolism; Arabidopsis Proteins / biosynthesis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Polarity; Genes, Reporter; Morphogenesis / physiology; Mutation; Plant Roots / cytology; Plant Roots / growth & development; Plants, Genetically Modified; Protein Kinases / genetics; Protein Kinases / metabolism; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2008 journal article
Potential sites of bioactive gibberellin production during reproductive growth in Arabidopsis
The Plant Cell Online, 20(2), 320–336.
co-author countries:
Australia 🇦🇺 United States of America 🇺🇸
Contributors: J. Hu *, M. Mitchum *, N. Barnaby*, B. Ayele, M. Ogawa*, E. Nam*, W. Lai *, A. Hanada, J. Alonso *, J. Ecker *
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Flowers / genetics; Flowers / growth & development; Flowers / metabolism; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Gibberellins / biosynthesis; Mixed Function Oxygenases / genetics; Mixed Function Oxygenases / metabolism; Mutation; Plants, Genetically Modified; Reverse Transcriptase Polymerase Chain Reaction; Seeds / genetics; Seeds / metabolism
Source: ORCID
Added: December 19, 2019
2008 journal article
TAA1-Mediated Auxin Biosynthesis Is Essential for Hormone Crosstalk and Plant Development
Cell, 133(1), 177–191.
co-author countries:
Czechia 🇨🇿 Germany 🇩🇪 United States of America 🇺🇸
Contributors: A. Stepanova n , J. Robertson-Hoyt n, J. Yun n, L. Benavente n, D. Xie n , K. Doležal *, A. Schlereth*, G. Jürgens *, J. Alonso n
MeSH headings : Amino Acid Sequence; Arabidopsis / drug effects; Arabidopsis / embryology; Arabidopsis / genetics; Arabidopsis / metabolism; Biosynthetic Pathways; Ethylenes / pharmacology; Indoleacetic Acids / metabolism; Indoles / metabolism; Molecular Sequence Data; Mutation; Plant Roots / drug effects; Seedlings / metabolism; Sequence Alignment; Tryptophan Transaminase / chemistry; Tryptophan Transaminase / genetics; Tryptophan Transaminase / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2008 journal article
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels
The Plant Cell Online, 20(2), 337–352.
co-author countries:
United States of America 🇺🇸
Contributors: P. Leivar *, E. Monte *, B. Al-Sady *, C. Carle*, A. Storer*, J. Alonso *, J. Ecker *, P. Quail*
MeSH headings : Amino Acid Sequence; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Basic Helix-Loop-Helix Transcription Factors / genetics; Basic Helix-Loop-Helix Transcription Factors / metabolism; Electrophoretic Mobility Shift Assay; Gene Expression Regulation, Plant / radiation effects; Immunoprecipitation; Light; Microscopy, Fluorescence; Molecular Sequence Data; Phytochrome / genetics; Phytochrome / metabolism; Phytochrome B / genetics; Phytochrome B / metabolism; Plants, Genetically Modified; Protein Binding; Seedlings / genetics; Seedlings / metabolism; Sequence Homology, Amino Acid; Two-Hybrid System Techniques
Source: ORCID
Added: December 19, 2019
2007 journal article
A WD40 domain cyclophilin interacts with histone H3 and functions in gene repression and organogenesis in Arabidopsis
PLANT CELL, 19(8), 2403–2416.
co-author countries:
United States of America 🇺🇸
Contributors: H. Li *, Z. He*, G. Lu *, S. Lee *, J. Alonso n, J. Ecker *, S. Luan *
MeSH headings : Arabidopsis / embryology; Arabidopsis / genetics; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Body Patterning; Cell Nucleus / metabolism; Cyclophilins / chemistry; Cyclophilins / genetics; Cyclophilins / metabolism; Flowers / anatomy & histology; Gene Expression Regulation, Plant; Genes, Homeobox; Histones / metabolism; Meristem / metabolism; Methylation; Mutant Proteins / isolation & purification; Mutation / genetics; Organogenesis; Plant Leaves / embryology; Plant Leaves / genetics; Plant Roots / growth & development; Protein Binding; Protein Structure, Tertiary; Protein Transport; Repressor Proteins / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2007 journal article
An adapter ligation-mediated PCR method for high-throughput mapping of T-DNA inserts in the Arabidopsis genome
NATURE PROTOCOLS, 2(11), 2910–2917.
co-author countries:
United States of America 🇺🇸
Contributors: . Ronan C. O'Malley, J. Alonso n, C. Kim*, T. Leisse* & J. Ecker *
MeSH headings : Arabidopsis / genetics; Chromosome Mapping / methods; DNA Primers; DNA, Bacterial / chemistry; Genome, Plant; Mutagenesis, Insertional; Polymerase Chain Reaction / methods; Sequence Analysis, DNA; Transformation, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2007 journal article
Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the< i> Arabidopsis Transcriptome
Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the< i> Arabidopsis Transcriptome. Cell, 131(7), 1340–1353.
co-author countries:
Switzerland 🇨🇭 United States of America 🇺🇸
Contributors: J. Chekanova*, B. Gregory *, S. Reverdatto *, H. Chen *, R. Kumar *, T. Hooker*, J. Yazaki *, P. Li*, N. Skiba *, Q. Peng *
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Chromosome Mapping / methods; Exoribonucleases / genetics; Exoribonucleases / metabolism; Exosome Multienzyme Ribonuclease Complex; Gene Expression Profiling / methods; Gene Expression Regulation, Plant; Genotype; MicroRNAs / metabolism; Molecular Sequence Data; Mutation; Nuclear Proteins / metabolism; Nucleic Acid Conformation; Oligonucleotide Array Sequence Analysis; Peptide Mapping; Phenotype; Plants, Genetically Modified / metabolism; Proteomics / methods; RNA / chemistry; RNA / metabolism; RNA Interference; RNA, Messenger / metabolism; RNA, Small Interfering / metabolism; RNA, Untranslated / metabolism; Tandem Mass Spectrometry
Source: ORCID
Added: December 19, 2019
2007 journal article
Multilevel interactions between ethylene and auxin in Arabidopsis roots
PLANT CELL, 19(7), 2169–2185.
co-author countries:
United States of America 🇺🇸
Contributors: A. Stepanova n , J. Yun n, A. Likhacheva n & J. Alonso n
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Binding Sites; DNA-Binding Proteins / metabolism; Ethylenes / metabolism; Ethylenes / pharmacology; Gene Expression Profiling; Genes, Plant; Genes, Reporter; Glucuronidase / metabolism; Indoleacetic Acids / metabolism; Models, Biological; Mutation / genetics; Nuclear Proteins / metabolism; Oligonucleotide Array Sequence Analysis; Plant Roots / drug effects; Plant Roots / enzymology; Plant Roots / growth & development; Plant Roots / metabolism; Promoter Regions, Genetic / genetics; Reverse Transcriptase Polymerase Chain Reaction; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2006 journal article
CDPKs CPK6 and CPK3 function in ABA regulation of guard cell S-type anion-and Ca2+-permeable channels and stomatal closure
PLoS Biology, 4(10), e327.
Contributors: I. Mori, Y. Murata, Y. Yang, S. Munemasa, Y. Wang, S. Andreoli, H. Tiriac, J. Alonso, J. Harper, J. Ecker
Source: ORCID
Added: December 19, 2019
2006 journal article
Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis
PLANT CELL, 18(7), 1704–1721.
co-author countries:
United States of America 🇺🇸
Contributors: A. Rudella*, G. Friso *, J. Alonso n, J. Ecker * & K. Van Wijk*
MeSH headings : Amino Acid Sequence; Arabidopsis / cytology; Arabidopsis / enzymology; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Chloroplasts / metabolism; Chloroplasts / ultrastructure; Down-Regulation; Electron Transport Chain Complex Proteins / genetics; Electron Transport Chain Complex Proteins / metabolism; Endopeptidase Clp / genetics; Endopeptidase Clp / metabolism; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Homeostasis; Molecular Chaperones / metabolism; Molecular Sequence Data; Multienzyme Complexes; Phenotype; Photoperiod; Photosystem II Protein Complex / physiology; Pigments, Biological / metabolism; Plant Leaves / metabolism; Plant Leaves / ultrastructure; Plants, Genetically Modified; Plastids / enzymology; Sequence Alignment; Starch / metabolism; Thylakoids / chemistry; Thylakoids / metabolism; Thylakoids / ultrastructure
Sources: Web Of Science, ORCID
Added: August 6, 2018
2006 journal article
Localization of iron in Arabidopsis seed requires the vacuolar membrane transporter VIT1
SCIENCE, 314(5803), 1295–1298.
co-author countries:
United States of America 🇺🇸
Contributors: S. Kim n, T. Punshon n, A. Lanzirotti n, L. Li n, J. Alonso n, J. Ecker n, J. Kaplan n, M. Guerinot n
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cation Transport Proteins / genetics; Cation Transport Proteins / metabolism; Cotyledon / chemistry; Homeostasis; Hypocotyl / chemistry; Image Processing, Computer-Assisted; Intracellular Membranes / metabolism; Iron / analysis; Iron / metabolism; Manganese / analysis; Mutation; Plant Epidermis / chemistry; Plants, Genetically Modified; Recombinant Fusion Proteins / metabolism; Seedlings / growth & development; Seeds / chemistry; Seeds / metabolism; Tomography, X-Ray Computed; Vacuoles / chemistry; Vacuoles / metabolism; Zinc / analysis
Sources: Web Of Science, ORCID
Added: August 6, 2018
2006 journal article
Molecular mechanisms of ethylene signaling in Arabidopsis
Molecular BioSystems, 2(3-4), 165.
co-author countries:
United States of America 🇺🇸
Contributors: L. Benavente n & J. Alonso n
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Ethylenes / metabolism; Ethylenes / pharmacology; Gene Expression Regulation, Plant; Plant Proteins / chemistry; Plant Proteins / genetics; Plant Proteins / metabolism; Receptors, Cell Surface / chemistry; Receptors, Cell Surface / genetics; Receptors, Cell Surface / metabolism; Signal Transduction / drug effects; raf Kinases / metabolism
Sources: Crossref, ORCID
Added: December 19, 2019
2006 journal article
Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis
Nature Reviews Genetics, 7(7), 524–536.
co-author countries:
United States of America 🇺🇸
Contributors: J. Alonso n & J. Ecker *
MeSH headings : Arabidopsis / genetics; Biotechnology / methods; Biotechnology / trends; Genome, Plant; Genomics / methods; Genomics / trends
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2006 chapter
PCR-based screening for insertional mutants
In Arabidopsis Protocols (pp. 163–172).
Contributors: A. Stepanova & J. Alonso
Source: ORCID
Added: December 19, 2019
2006 journal article
PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism
Proceedings of the National Academy of Sciences, 103(26), 10134–10139.
co-author countries:
Switzerland 🇨🇭 United States of America 🇺🇸
Contributors: P. Lariguet*, I. Schepens *, D. Hodgson*, U. Pedmale *, M. Trevisan *, C. Kami*, M. Carbonnel*, J. Alonso *, J. Ecker *, E. Liscum *
author keywords: Arabidopsis thaliana; NONPHOTOTROPIC HYPOCCTYL 3; photomorphogenesis photoreceptors
MeSH headings : Arabidopsis / genetics; Arabidopsis / physiology; Arabidopsis Proteins / analysis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Membrane / chemistry; Cell Membrane / metabolism; Intracellular Signaling Peptides and Proteins / analysis; Intracellular Signaling Peptides and Proteins / genetics; Intracellular Signaling Peptides and Proteins / metabolism; Membrane Proteins / analysis; Membrane Proteins / genetics; Membrane Proteins / metabolism; Phosphoproteins / analysis; Phosphoproteins / genetics; Phosphoproteins / metabolism; Phototropism / genetics; Phytochrome A / metabolism; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism
Source: ORCID
Added: December 19, 2019
2006 journal article
RACK1 mediates multiple hormone responsiveness and developmental processes in Arabidopsis
Journal of Experimental Botany, 57(11), 2697–2708.
co-author countries:
Canada 🇨🇦 China 🇨🇳 United States of America 🇺🇸
Contributors: J. Chen *, H. Ullah *, B. Temple *, J. Liang *, J. Guo*, J. Alonso *, J. Ecker *, A. Jones *
author keywords: Abscisic acid; auxin; brassinosteroid; flowering; gibberellin; RACK1; seed germination; signal transduction
MeSH headings : Amino Acid Sequence; Arabidopsis / drug effects; Arabidopsis / growth & development; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / genetics; Arabidopsis Proteins / physiology; GTP-Binding Proteins / genetics; Gibberellins / pharmacology; Glucuronidase / analysis; Models, Molecular; Molecular Sequence Data; Mutation; Plant Growth Regulators / pharmacology; Plant Leaves / anatomy & histology; Plant Leaves / growth & development; Plant Leaves / metabolism; Plants, Genetically Modified / drug effects; Plants, Genetically Modified / growth & development; Plants, Genetically Modified / metabolism; Protein Subunits / genetics; Receptors for Activated C Kinase; Receptors, Cell Surface / chemistry; Receptors, Cell Surface / genetics; Receptors, Cell Surface / physiology; Recombinant Fusion Proteins / analysis; Sequence Alignment
Source: ORCID
Added: December 19, 2019
2006 journal article
The Arabidopsis histidine phosphotransfer proteins are redundant positive regulators of cytokinin signaling
The Plant Cell Online, 18(11), 3073–3087.
co-author countries:
United States of America 🇺🇸
Contributors: C. Hutchison*, J. Li *, C. Argueso*, M. Gonzalez*, E. Lee*, M. Lewis*, B. Maxwell *, T. Perdue*, G. Schaller *, J. Alonso *
MeSH headings : Arabidopsis / drug effects; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; Chlorophyll / metabolism; Cytokinins / metabolism; Cytokinins / pharmacology; DNA, Bacterial / metabolism; Histidine / metabolism; Hypocotyl / cytology; Hypocotyl / drug effects; Molecular Sequence Data; Mutagenesis, Insertional; Mutation / genetics; Phenotype; Phosphotransferases / metabolism; Phylogeny; Plant Roots / cytology; Plant Roots / drug effects; Plant Shoots / cytology; Plant Shoots / drug effects; Seedlings / cytology; Seedlings / drug effects; Seeds / cytology; Seeds / drug effects; Signal Transduction / drug effects
Source: ORCID
Added: December 19, 2019
2005 journal article
" Flagellin is not a major defense elicitor in Ralstonia solanacearum cells (vol 17, pg 696, 2005)
MOLECULAR PLANT-MICROBE INTERACTIONS, 18(9), 1024.
Contributors: C. Pfund, J. Tans-Kersten, F. Dunning, J. Alonso, J. Ecker, C. Allen, A. Bent
Source: ORCID
Added: December 19, 2019
2005 journal article
A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis
PLANT CELL, 17(8), 2230–2242.
co-author countries:
United States of America 🇺🇸
Contributors: A. Stepanova n , J. Hoyt n, A. Hamilton n & J. Alonso n
MeSH headings : Anthranilate Synthase / genetics; Anthranilate Synthase / metabolism; Arabidopsis / genetics; Ethylenes / metabolism; Indoleacetic Acids / physiology; Mutation; Nitrogenous Group Transferases / genetics; Nitrogenous Group Transferases / metabolism; Plant Growth Regulators / physiology; Plant Roots / genetics; Plant Roots / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2005 journal article
An Arabidopsis NPR1-like gene, NPR4, is required for disease resistance
PLANT JOURNAL, 41(2), 304–318.
co-author countries:
Canada 🇨🇦 United Kingdom of Great Britain and Northern Ireland 🇬🇧 United States of America 🇺🇸
Contributors: G. Liu *, E. Holub*, J. Alonso n, J. Ecker * & P. Fobert*
author keywords: reverse genetics; PR genes; cross-talk; signaling; salicylic acid; gene family
MeSH headings : Amino Acid Sequence; Arabidopsis / genetics; Arabidopsis Proteins / genetics; Base Sequence; DNA, Bacterial / genetics; Immunity, Innate; Molecular Sequence Data; Mutagenesis, Insertional; Phylogeny; Plant Diseases / genetics; Plant Diseases / microbiology; Pseudomonas syringae / pathogenicity
Sources: Web Of Science, ORCID
Added: August 6, 2018
2005 journal article
Arabidopsis ethylene signaling pathway
Science Signaling, 2005(276), cm4.
Contributors: A. Stepanova & J. Alonso
Source: ORCID
Added: December 19, 2019
2005 journal article
Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation
Development, 132(18), 4107–4118.
Contributors: P. Nagpal, C. Ellis, H. Weber, S. Ploense, L. Barkawi, T. Guilfoyle, G. Hagen, J. Alonso, J. Cohen, E. Farmer
Source: ORCID
Added: December 19, 2019
2005 journal article
Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development
The Plant Cell Online, 17(1), 61–76.
Contributors: M. Prigge, D. Otsuga, J. Alonso, J. Ecker, G. Drews & S. Clark
Source: ORCID
Added: December 19, 2019
2005 journal article
Ethylene signalling and response pathway: A unique signalling cascade with a multitude of inputs and outputs
Physiologia Plantarum, 123(2), 195–206.
Contributors: A. Stepanova & J. Alonso
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2005 journal article
Functional genomic analysis of the AUXIN RESPONSE FACTOR gene family members in Arabidopsis thaliana: unique and overlapping functions of ARF7 and ARF19
The Plant Cell Online, 17(2), 444–463.
Contributors: Y. Okushima, P. Overvoorde, K. Arima, J. Alonso, A. Chan, C. Chang, J. Ecker, B. Hughes, A. Lui, D. Nguyen
Source: ORCID
Added: December 19, 2019
2005 journal article
Functional genomic analysis of the AUXIN/INDOLE-3-ACETIC ACID gene family members in Arabidopsis thaliana
The Plant Cell Online, 17(12), 3282–3300.
Contributors: P. Overvoorde, Y. Okushima, J. Alonso, A. Chan, C. Chang, J. Ecker, B. Hughes, A. Liu, C. Onodera, H. Quach
Source: ORCID
Added: December 19, 2019
2005 journal article
Multiple type-B response regulators mediate cytokinin signal transduction in Arabidopsis
The Plant Cell Online, 17(11), 3007–3018.
Contributors: M. Mason, D. Mathews, D. Argyros, B. Maxwell, J. Kieber, J. Alonso, J. Ecker, G. Schaller
Source: ORCID
Added: December 19, 2019
2005 journal article
NPH4/ARF7 and ARF19 promote leaf expansion and auxin‐induced lateral root formation
The Plant Journal, 43(1), 118–130.
Contributors: J. Wilmoth, S. Wang, S. Tiwari, A. Joshi, G. Hagen, T. Guilfoyle, J. Alonso, J. Ecker, J. Reed
Source: ORCID
Added: December 19, 2019
2005 journal article
Phytochrome-Specific Type 5 Phosphatase Controls Light Signal Flux by Enhancing Phytochrome Stability and Affinity for a Signal Transducer
Cell, 120(3), 395–406.
co-author countries:
Germany 🇩🇪 Korea (Republic of) 🇰🇷 United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis / radiation effects; Arabidopsis Proteins / genetics; Arabidopsis Proteins / isolation & purification; Arabidopsis Proteins / metabolism; Avena; Binding Sites / physiology; Light; Nucleoside-Diphosphate Kinase / metabolism; Phosphoprotein Phosphatases / genetics; Phosphoprotein Phosphatases / isolation & purification; Phosphoprotein Phosphatases / metabolism; Phosphorylation; Photic Stimulation; Photosynthesis / physiology; Photosynthesis / radiation effects; Phytochrome / metabolism; Phytochrome / radiation effects; Plants, Genetically Modified; Protein Structure, Tertiary / physiology; Serine / metabolism; Signal Transduction / physiology; Signal Transduction / radiation effects; Up-Regulation / physiology
Source: Crossref
Added: September 8, 2020
2005 journal article
Phytochrome-specific type 5 phosphatase controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer
Cell, 120(3), 395–406.
Contributors: J. Ryu, J. Kim, T. Kunkel, B. Kim, D. Cho, S. Hong, S. Kim, A. Fernández, Y. Kim, J. Alonso
Source: ORCID
Added: December 19, 2019
2004 journal article
A Homolog of Prokaryotic Thiol Disulfide Transporter CcdA Is Required for the Assembly of the Cytochrome b6f Complex in Arabidopsis Chloroplasts
Journal of Biological Chemistry, 279(31), 32474–32482.
co-author countries:
United States of America 🇺🇸
Contributors: M. Page, P. Hamel, S. Gabilly, H. Zegzouti *, J. Perea*, J. Alonso *, J. Ecker *, S. Theg *, S. Christensen*, S. Merchant
MeSH headings : Alkaline Phosphatase; Amino Acid Motifs; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Bacterial Proteins / chemistry; Cell Membrane / metabolism; Chloroplasts / metabolism; Cyclin-Dependent Kinases / chemistry; Cytochrome b6f Complex / metabolism; Cytochromes / chemistry; Cytochromes / metabolism; Cytochromes f / chemistry; Disulfides / chemistry; Lac Operon; Membrane Proteins / chemistry; Membrane Proteins / metabolism; Models, Genetic; Mutation; Peptides / chemistry; Photosynthesis; Plastids / metabolism; Protein Conformation; Protein Structure, Tertiary; RNA, Messenger / metabolism; Sulfhydryl Compounds; Time Factors
Sources: Crossref, ORCID
Added: December 19, 2019
2004 journal article
CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis
Proceedings of the National Academy of Sciences, 101(11), 3985–3990.
co-author countries:
Spain 🇪🇸
Contributors: F. Novillo*, J. Alonso *, J. Ecker * & J. Salinas*
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / biosynthesis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cold Temperature; DNA-Binding Proteins / biosynthesis; DNA-Binding Proteins / genetics; Mutation; Time Factors; Trans-Activators / biosynthesis; Trans-Activators / genetics; Trans-Activators / metabolism; Transcription Factors
Sources: Crossref, ORCID
Added: December 19, 2019
2004 journal article
Convergence of Signaling Pathways in the Control of Differential Cell Growth in< i> Arabidopsis
Convergence of Signaling Pathways in the Control of Differential Cell Growth in< i> Arabidopsis. Developmental Cell, 7(2), 193–204.
Contributors: H. Li, P. Johnson, A. Stepanova, J. Alonso & J. Ecker
Source: ORCID
Added: December 19, 2019
2004 journal article
Convergence of signaling of differential cell growth pathways in the control in Arabidopsis
Developmental Cell, 7(2), 193–204.
co-author countries:
United States of America 🇺🇸
Contributors: H. Li *, P. Johnson*, A. Stepanova* , J. Alonso * & J. Ecker *
MeSH headings : ADP-Ribosylation Factors / genetics; Alleles; Arabidopsis / genetics; Arabidopsis / physiology; Cell Division; Cloning, Molecular; Ethylenes / pharmacology; Gene Expression Regulation, Plant; Immunoblotting; In Situ Hybridization; Indoleacetic Acids / metabolism; Models, Biological; Models, Genetic; Mutagenesis; Mutation; Phenotype; Plant Proteins / physiology; Plants, Genetically Modified; Plasmids / metabolism; RNA / metabolism; Saccharomyces cerevisiae Proteins; Signal Transduction; Time Factors; Transcription, Genetic
Source: ORCID
Added: December 19, 2019
2004 journal article
DELLA proteins and gibberellin-regulated seed germination and floral development in Arabidopsis
Plant Physiology, 135(2), 1008–1019.
Contributors: L. Tyler, S. Thomas, J. Hu, A. Dill, J. Alonso, J. Ecker, T. Sun
Source: ORCID
Added: December 19, 2019
2004 journal article
Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana
MOLECULAR PLANT-MICROBE INTERACTIONS, 17(6), 696–706.
Contributors: C. Pfund, J. Tans-Kersten, F. Dunning, J. Alonso, J. Ecker, C. Allen, A. Bent
MeSH headings : Amino Acid Sequence; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis / microbiology; Arabidopsis Proteins / metabolism; Cell Division / drug effects; Cell Extracts / pharmacology; Consensus Sequence; Flagella / physiology; Flagellin / chemistry; Molecular Sequence Data; Movement; Peptides / chemistry; Peptides / pharmacology; Plant Diseases / microbiology; Protein Kinases / metabolism; Ralstonia solanacearum / cytology; Ralstonia solanacearum / pathogenicity; Ralstonia solanacearum / physiology; Seedlings / cytology; Seedlings / drug effects; Seedlings / metabolism; Tobacco / drug effects; Tobacco / microbiology; Virulence Factors / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 journal article
GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination
Plant Physiology, 135(2), 907–915.
Contributors: J. Chen, S. Pandey, J. Huang, J. Alonso, J. Ecker, S. Assmann, A. Jones
Source: ORCID
Added: December 19, 2019
2004 journal article
Regulation of flowering time in Arabidopsis by K homology domain proteins
Proceedings of the National Academy of Sciences, 101(34), 12759–12764.
co-author countries:
United States of America 🇺🇸
Contributors: T. Mockler *, X. Yu, D. Shalitin, D. Parikh, T. Michael, J. Liou, J. Huang, Z. Smith, J. Alonso, J. Ecker
MeSH headings : Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Biological Clocks / physiology; Circadian Rhythm / physiology; Flowers / physiology; Gene Expression Profiling; Gene Expression Regulation, Plant; MADS Domain Proteins / genetics; MADS Domain Proteins / metabolism; Mutation; Oligonucleotide Array Sequence Analysis; Photoperiod; Plants, Genetically Modified; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Time Factors
Sources: Crossref, ORCID
Added: December 19, 2019
2004 journal article
The canonical ethylene signaling pathway
Science Signaling, 2004(221), cm1.
Contributors: A. Stepanova & J. Alonso
Source: ORCID
Added: December 19, 2019
2004 journal article
The ethylene signaling pathway
SCIENCE, 306(5701), 1513–1515.
co-author countries:
United States of America 🇺🇸
Contributors: J. Alonso n & A. Stepanova n
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Nucleus / metabolism; DNA-Binding Proteins; Ethylenes / metabolism; Models, Biological; Mutation; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Plant Proteins / chemistry; Plant Proteins / metabolism; Plants / genetics; Plants / metabolism; Receptors, Cell Surface / chemistry; Receptors, Cell Surface / metabolism; SKP Cullin F-Box Protein Ligases / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription, Genetic
Sources: Web Of Science, ORCID
Added: August 6, 2018
2004 journal article
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development
Proceedings of the National Academy of Sciences, 101(46), 16091–16098.
co-author countries:
United States of America 🇺🇸
Contributors: E. Monte *, J. Tepperman*, B. Al-Sady *, K. Kaczorowski*, J. Alonso *, J. Ecker *, X. Li *, Y. Zhang *, P. Quail*
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / physiology; Basic Helix-Loop-Helix Transcription Factors; Chlorophyll / metabolism; Chloroplasts / physiology; Chloroplasts / radiation effects; Circadian Rhythm; Gene Expression Profiling; Genes, Plant; Light; Mutation; Photosynthetic Reaction Center Complex Proteins / genetics; Photosynthetic Reaction Center Complex Proteins / physiology; Phytochrome / genetics; Phytochrome / physiology; Plants, Genetically Modified; Seedlings / growth & development; Seedlings / physiology; Seedlings / radiation effects; Signal Transduction
Sources: Crossref, ORCID
Added: December 19, 2019
2004 journal article
Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling
The Plant Cell Online, 16(3), 658–671.
Contributors: J. To, G. Haberer, F. Ferreira, J. Deruère, M. Mason, G. Schaller, J. Alonso, J. Ecker, J. Kieber
Source: ORCID
Added: December 19, 2019
2003 journal article
< i> Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance
< i> Arabidopsis RIN4 Is a Target of the Type III Virulence Effector AvrRpt2 and Modulates RPS2-Mediated Resistance. Cell, 112(3), 379–389.
Contributors: D. Mackey, Y. Belkhadir, J. Alonso, J. Ecker & J. Dangl
Source: ORCID
Added: December 19, 2019
2003 journal article
A growth regulatory loop that provides homeostasis to phytochrome A signaling
The Plant Cell Online, 15(12), 2966–2978.
Contributors: P. Lariguet, H. Boccalandro, J. Alonso, J. Ecker, J. Chory, J. Casal, C. Fankhauser
Source: ORCID
Added: December 19, 2019
2003 journal article
Chloroplast to nucleus communication triggered by accumulation of Mg-protoporphyrinIX
Nature, 421(6918), 79–83.
Contributors: Å. Strand, T. Asami, J. Alonso, J. Ecker & J. Chory
Source: ORCID
Added: December 19, 2019
2003 journal article
Enhanced fitness conferred by naturally occurring variation in the circadian clock
Science, 302(5647), 1049–1053.
Contributors: T. Michael, P. Salome, J. Hannah, T. Spencer, E. Sharp, M. McPeek, J. Alonso, J. Ecker, C. McClung
Source: ORCID
Added: December 19, 2019
2003 journal article
Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis
Proceedings of the National Academy of Sciences, 100(5), 2992–2997.
Contributors: J. Alonso, A. Stepanova, R. Solano, E. Wisman, S. Ferrari, F. Ausubel, J. Ecker
Source: ORCID
Added: December 19, 2019
2003 journal article
GUN4, a regulator of chlorophyll synthesis and intracellular signaling
Science, 299(5608), 902–906.
Contributors: R. Larkin, J. Alonso, J. Ecker & J. Chory
Source: ORCID
Added: December 19, 2019
2003 journal article
Genome-wide insertional mutagenesis of Arabidopsis thaliana
Science, 301(5633), 653–657.
Contributors: J. Alonso, A. Stepanova, T. Leisse, C. Kim, H. Chen, P. Shinn, D. Stevenson, J. Zimmerman, P. Barajas, R. Cheuk
Source: ORCID
Added: December 19, 2019
2003 journal article
Genome-wide insertional mutagenesis of Arabidopsis thaliana (vol 301, pg 653, 2003)
Science, 301(5641), 1849.
Contributors: J. Alonso
Source: ORCID
Added: December 19, 2019
2003 journal article
Isolation and characterization of phyC mutants in Arabidopsis reveals complex crosstalk between phytochrome signaling pathways
The Plant Cell Online, 15(9), 1962–1980.
Contributors: E. Monte, J. Alonso, J. Ecker, Y. Zhang, X. Li, J. Young, S. Austin-Phillips, P. Quail
Source: ORCID
Added: December 19, 2019
2003 journal article
Mutations in the Ca2+/H+ transporter CAX1 increase CBF/DREB1 expression and the cold-acclimation response in Arabidopsis
The Plant Cell Online, 15(12), 2940–2951.
Contributors: R. Catalá, E. Santos, J. Alonso, J. Ecker, J. Martínez-Zapater & J. Salinas
Source: ORCID
Added: December 19, 2019
2003 chapter
T-DNA mutagenesis in Arabidopsis
In Plant Functional Genomics (pp. 177–187).
co-author countries:
United States of America 🇺🇸
Contributors: J. Alonso n & A. Stepanova n
MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; DNA, Bacterial / genetics; Genetic Techniques; Indicators and Reagents; Mutagenesis, Insertional / methods; Rhizobium / genetics; Transformation, Genetic
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2003 journal article
The Balance between phytochrome kinase substrate1 and PKS2 Provides Homeostasis for Phytochrome A Signaling in Arabidopsis
The Plant Cell Online.
Contributors: P. Lariguet, H. Boccalandro, J. Alonso, J. Ecker, J. Chory, J. Casal, C. Fankhausera
Source: ORCID
Added: December 19, 2019
2003 journal article
The β-subunit of the Arabidopsis G protein negatively regulates auxin-induced cell division and affects multiple developmental processes
The Plant Cell Online, 15(2), 393–409.
Contributors: H. Ullah, J. Chen, B. Temple, D. Boyes, J. Alonso, K. Davis, J. Ecker, A. Jones
Source: ORCID
Added: December 19, 2019
2002 journal article
A role for peroxisomes in photomorphogenesis and development of Arabidopsis
Science, 297(5580), 405–409.
Contributors: J. Hu, M. Aguirre, C. Peto, J. Alonso, J. Ecker & J. Chory
Source: ORCID
Added: December 19, 2019
2002 journal article
De-Etiolated 1 and Damaged DNA Binding Protein 1 Interact to Regulate< i> Arabidopsis Photomorphogenesis
De-Etiolated 1 and Damaged DNA Binding Protein 1 Interact to Regulate< i> Arabidopsis Photomorphogenesis. Current Biology, 12(17), 1462–1472.
Contributors: D. Schroeder, M. Gahrtz, B. Maxwell, R. Cook, J. Kan, J. Alonso, J. Ecker, J. Chory
Source: ORCID
Added: December 19, 2019
2002 journal article
NPSN11 is a cell plate-associated SNARE protein that interacts with the syntaxin KNOLLE
Plant Physiology, 129(2), 530–539.
Contributors: H. Zheng, S. Bednarek, A. Sanderfoot, J. Alonso, J. Ecker & N. Raikhel
Source: ORCID
Added: December 19, 2019
2002 journal article
Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth
Genetics, 162(3), 1445–1456.
Contributors: D. Friedrichsen, J. Nemhauser, T. Muramitsu, J. Maloof, J. Alonso, J. Ecker, M. Furuya, J. Chory
Source: ORCID
Added: December 19, 2019
2002 journal article
Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3
Genes & Development, 16(23), 3100–3112.
Contributors: Y. Zhao, A. Hull, N. Gupta, K. Goss, J. Alonso, J. Ecker, J. Normanly, J. Chory, J. Celenza
Source: ORCID
Added: December 19, 2019
2001 journal article
An Arabidopsis circadian clock component interacts with both CRY1 and phyB
Nature, 410(6827), 487–490.
Contributors: J. Jarillo, J. Capel, R. Tang, H. Yang, J. Alonso, J. Ecker, A. Cashmore
Source: ORCID
Added: December 19, 2019
2001 journal article
Phototropin-related NPL1 controls chloroplast relocation induced by blue light
Nature, 410(6831), 952–954.
Contributors: J. Jarillo, H. Gabrys, J. Capel, J. Alonso, J. Ecker & A. Cashmore
Source: ORCID
Added: December 19, 2019
2001 journal article
The ethylene pathway: a paradigm for plant hormone signaling and interaction
Science Signaling, 2001(70), re1.
Contributors: J. Alonso & J. Ecker
Source: ORCID
Added: December 19, 2019
2000 journal article
Ethylene captures a metal! Metal ions are involved in ethylene perception and signal transduction
Plant and Cell Physiology, 41(5), 548–555.
Contributors: T. Hirayama & J. Alonso
Source: ORCID
Added: December 19, 2019
2000 journal article
Involvement of NRAMP1 from Arabidopsis thaliana in iron transport
Biochem. J, 347, 749–755.
co-author countries:
France 🇫🇷 United States of America 🇺🇸
Contributors: C. Curie *, J. Alonso *, M. Le Jean *, J. Ecker * & J. Briat *
author keywords: iron deficiency; iron toxicity; Nramp; plant; transport
Source: ORCID
Added: December 19, 2019
2000 journal article
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
Nature, 408(6814), 816–820.
Contributors: A. Theologis, J. Ecker, C. Palm, N. Federspiel, S. Kaul, O. White, J. Alonso, H. Altafi, R. Araujo, C. Bowman
Source: ORCID
Added: December 19, 2019
1999 journal article
EIN2, a bifunctional transducer of ethylene and stress responses in Arabidopsis
Science, 284(5423), 2148–2152.
Contributors: J. Alonso, T. Hirayama, G. Roman, S. Nourizadeh & J. Ecker
Source: ORCID
Added: December 19, 2019
1999 chapter
Ethylene Perception and Response in Citrus Fruit
In Biology and Biotechnology of the Plant Hormone Ethylene II (pp. 137–143).
Contributors: X. Cubells-Martinez, J. Alonso, M. Sanchez-Ballesta & A. Granell
Source: ORCID
Added: December 19, 2019
1999 journal article
RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson Disease–Related Copper Transporter, Is Required for Ethylene Signaling in< i> Arabidopsis
RESPONSIVE-TO-ANTAGONIST1, a Menkes/Wilson Disease–Related Copper Transporter, Is Required for Ethylene Signaling in< i> Arabidopsis. Cell, 97(3), 383–393.
Contributors: T. Hirayama, J. Kieber, N. Hirayama, M. Kogan, P. Guzman, S. Nourizadeh, J. Alonso, W. Dailey, A. Dancis, J. Ecker
Source: ORCID
Added: December 19, 2019
1995 journal article
A non-photosynthetic ferredoxin gene is induced by ethylene in Citrus organs
Plant Molecular Biology, 29(6), 1211–1221.
Contributors: J. Alonso, J. Chamarro & A. Granell
Source: ORCID
Added: December 19, 2019
1995 journal article
A putative vacuolar processing protease is regulated by ethylene and also during fruit ripening in Citrus fruit
Plant Physiology, 109(2), 541–547.
Contributors: J. Alonso & A. Granell
Source: ORCID
Added: December 19, 2019
1995 journal article
Evidence for the involvement of ethylene in the expression of specific RNAs during maturation of the orange, a non-climacteric fruit
Plant Molecular Biology, 29(2), 385–390.
Contributors: J. Alonso, J. Chamarro & A. Granell
Source: ORCID
Added: December 19, 2019
1992 journal article
Two dimensional gel electrophoresis patterns of total, in vivo labelled and in vitro translated polypeptides from orange flavedo during maturation and following ethylene treatment
Physiologia Plantarum, 85(2), 147–156.
Contributors: J. Alonso, J. García‐Martínez & J. Chamarro
Source: ORCID
Added: December 19, 2019
conference paper
Deep sequencing of ribosomal footprints for studying genome-wide mRNA translation in plants
Merchante, K., Hu, Q., Stepanova, A. N., Alonso, J. M., & Heber, S.
Contributors: K. Merchante, Q. Hu, A. Stepanova, J. Alonso & S. Heber
Source: ORCID
Added: December 19, 2019
Employment
Updated: March 1st, 2019 10:42
2001 - present
North Carolina State University Raleigh, NC, US
Professor
Plant and Microbial Biology
